Query psy9213
Match_columns 378
No_of_seqs 192 out of 2054
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 100.0 3.2E-48 7E-53 362.1 29.4 333 3-343 136-470 (479)
2 TIGR00911 2A0308 L-type amino 100.0 4.6E-43 1E-47 345.0 33.5 319 3-321 166-486 (501)
3 COG0833 LysP Amino acid transp 100.0 1.4E-42 3E-47 325.5 28.4 318 3-321 161-513 (541)
4 TIGR00906 2A0303 cationic amin 100.0 3.9E-40 8.4E-45 325.7 34.7 301 4-310 163-556 (557)
5 PRK11357 frlA putative fructos 100.0 6.1E-40 1.3E-44 318.6 33.8 300 4-307 129-437 (445)
6 PRK15049 L-asparagine permease 100.0 6.7E-39 1.4E-43 314.0 33.5 281 3-284 145-445 (499)
7 TIGR00908 2A0305 ethanolamine 100.0 1.9E-38 4.2E-43 308.0 33.5 298 3-304 122-429 (442)
8 PRK10655 potE putrescine trans 100.0 3.3E-38 7.1E-43 306.0 34.7 296 4-306 125-429 (438)
9 PRK10836 lysine transporter; P 100.0 3.4E-38 7.3E-43 309.3 32.8 318 3-321 131-483 (489)
10 PRK10746 putative transport pr 100.0 8.3E-38 1.8E-42 303.8 33.7 305 3-309 125-453 (461)
11 PRK10197 gamma-aminobutyrate t 100.0 1E-37 2.2E-42 302.4 34.0 310 3-313 107-437 (446)
12 PRK11387 S-methylmethionine tr 100.0 1.4E-37 3.1E-42 303.7 33.5 301 3-304 130-455 (471)
13 PRK10644 arginine:agmatin anti 100.0 5.4E-37 1.2E-41 297.8 35.2 295 4-307 127-430 (445)
14 TIGR00913 2A0310 amino acid pe 100.0 2.6E-37 5.7E-42 302.9 33.2 315 6-321 122-477 (478)
15 COG1113 AnsP Gamma-aminobutyra 100.0 4.9E-38 1.1E-42 289.2 25.4 302 2-304 127-449 (462)
16 TIGR00909 2A0306 amino acid tr 100.0 3.5E-37 7.6E-42 298.3 32.8 290 5-303 136-428 (429)
17 PRK11049 D-alanine/D-serine/gl 100.0 1E-36 2.2E-41 297.4 33.5 273 3-276 135-429 (469)
18 PRK10249 phenylalanine transpo 100.0 1.5E-36 3.3E-41 295.1 33.4 276 3-279 136-428 (458)
19 TIGR00905 2A0302 transporter, 100.0 6.9E-36 1.5E-40 292.0 35.3 299 3-309 130-440 (473)
20 TIGR00930 2a30 K-Cl cotranspor 100.0 2E-36 4.4E-41 311.7 32.0 305 4-315 205-547 (953)
21 TIGR01773 GABAperm gamma-amino 100.0 5E-36 1.1E-40 291.8 32.5 300 3-303 127-447 (452)
22 PRK10238 aromatic amino acid t 100.0 1E-35 2.2E-40 289.2 33.5 276 3-279 127-419 (456)
23 PRK10580 proY putative proline 100.0 1.6E-35 3.6E-40 288.2 33.4 300 4-304 125-446 (457)
24 TIGR00910 2A0307_GadC glutamat 100.0 2.4E-35 5.1E-40 289.3 34.2 277 4-282 125-426 (507)
25 PRK10435 cadB lysine/cadaverin 100.0 4.4E-35 9.6E-40 283.3 32.8 293 4-310 123-429 (435)
26 TIGR03813 put_Glu_GABA_T putat 100.0 2.1E-34 4.5E-39 281.8 33.7 275 5-281 126-422 (474)
27 TIGR03810 arg_ornith_anti argi 100.0 1.8E-34 3.9E-39 281.6 33.0 294 4-304 125-430 (468)
28 KOG1286|consensus 100.0 8E-35 1.7E-39 282.5 26.1 271 6-277 159-457 (554)
29 PRK11021 putative transporter; 100.0 2E-33 4.3E-38 270.2 33.7 260 3-278 116-381 (410)
30 TIGR00907 2A0304 amino acid pe 100.0 1.7E-33 3.7E-38 276.1 31.7 274 3-277 144-438 (482)
31 TIGR03428 ureacarb_perm permea 100.0 2.1E-32 4.6E-37 267.5 33.6 276 3-280 145-444 (475)
32 COG0531 PotE Amino acid transp 100.0 5.2E-32 1.1E-36 265.0 34.5 260 2-262 134-401 (466)
33 PF00324 AA_permease: Amino ac 100.0 7.2E-35 1.6E-39 285.6 10.4 258 5-262 120-409 (478)
34 PRK15238 inner membrane transp 100.0 1.9E-31 4.2E-36 262.0 33.2 271 4-276 137-453 (496)
35 KOG1289|consensus 100.0 9.5E-32 2.1E-36 252.1 22.9 285 2-287 177-486 (550)
36 PF13520 AA_permease_2: Amino 100.0 9E-31 2E-35 253.4 28.2 273 3-282 119-406 (426)
37 KOG2082|consensus 99.9 6E-25 1.3E-29 209.7 20.4 252 76-336 416-687 (1075)
38 KOG1288|consensus 99.9 2.3E-25 5E-30 211.0 17.5 273 1-278 196-501 (945)
39 KOG2083|consensus 99.8 5.7E-18 1.2E-22 159.9 16.6 297 5-307 151-468 (643)
40 TIGR00837 araaP aromatic amino 99.7 3.8E-15 8.2E-20 142.1 24.4 242 4-262 116-369 (381)
41 TIGR00796 livcs branched-chain 99.7 3E-14 6.5E-19 133.4 27.3 243 4-266 113-370 (378)
42 TIGR00912 2A0309 spore germina 99.1 5.3E-08 1.2E-12 92.2 24.7 171 3-180 116-293 (359)
43 PF03222 Trp_Tyr_perm: Tryptop 98.9 1.4E-06 3.1E-11 83.1 26.8 243 4-262 122-375 (394)
44 TIGR00814 stp serine transport 98.8 2.9E-06 6.3E-11 80.9 23.6 176 4-183 124-311 (397)
45 PRK10483 tryptophan permease; 98.7 2.6E-05 5.6E-10 74.2 26.0 244 4-262 129-383 (414)
46 PRK15132 tyrosine transporter 98.6 9.5E-05 2.1E-09 70.5 27.8 239 5-262 123-372 (403)
47 PRK09664 tryptophan permease T 98.4 0.00032 7E-09 66.8 25.7 129 4-135 128-258 (415)
48 COG0814 SdaC Amino acid permea 98.3 0.00027 5.8E-09 68.0 22.9 125 4-132 130-256 (415)
49 PRK13629 threonine/serine tran 98.1 0.0018 3.8E-08 62.0 23.8 178 3-183 139-346 (443)
50 PF05525 Branch_AA_trans: Bran 97.9 0.0048 1E-07 59.0 22.4 245 3-267 119-377 (427)
51 PRK11375 allantoin permease; P 97.7 0.038 8.3E-07 54.4 26.2 43 6-48 162-204 (484)
52 KOG1304|consensus 97.7 0.0025 5.5E-08 60.7 16.9 61 69-130 240-303 (449)
53 PF03845 Spore_permease: Spore 97.7 0.0056 1.2E-07 56.9 19.4 173 3-182 114-291 (320)
54 COG1114 BrnQ Branched-chain am 97.6 0.042 9.1E-07 51.6 22.8 242 3-266 121-378 (431)
55 PHA02764 hypothetical protein; 97.5 0.0054 1.2E-07 55.1 14.7 103 72-203 183-285 (399)
56 PLN03074 auxin influx permease 97.4 0.056 1.2E-06 53.1 22.7 62 68-130 231-292 (473)
57 COG3949 Uncharacterized membra 97.4 0.054 1.2E-06 49.3 20.5 88 84-174 193-280 (349)
58 COG1457 CodB Purine-cytosine p 97.4 0.13 2.8E-06 49.4 26.2 42 4-45 132-173 (442)
59 PRK15433 branched-chain amino 97.3 0.16 3.5E-06 48.8 22.9 177 3-181 123-308 (439)
60 PF02705 K_trans: K+ potassium 97.1 0.1 2.2E-06 51.3 20.3 227 3-245 133-372 (534)
61 KOG1303|consensus 97.1 0.066 1.4E-06 51.7 18.5 57 73-130 231-287 (437)
62 PF01490 Aa_trans: Transmembra 96.8 0.00019 4.1E-09 69.1 -1.7 182 67-254 189-378 (409)
63 COG1953 FUI1 Cytosine/uracil/t 96.6 0.79 1.7E-05 44.5 23.5 47 3-49 172-218 (497)
64 PRK11017 codB cytosine permeas 96.6 0.79 1.7E-05 44.1 25.5 100 8-113 126-226 (404)
65 PRK15419 proline:sodium sympor 96.5 1 2.2E-05 44.8 27.5 39 141-179 314-353 (502)
66 PTZ00206 amino acid transporte 96.3 0.53 1.1E-05 46.3 19.0 60 71-130 257-317 (467)
67 PF01235 Na_Ala_symp: Sodium:a 96.3 0.75 1.6E-05 44.1 19.1 177 3-183 140-338 (416)
68 PRK09442 panF sodium/panthothe 96.3 1.3 2.8E-05 43.7 27.6 83 95-178 262-346 (483)
69 TIGR02119 panF sodium/pantothe 96.2 1.4 3.1E-05 43.3 26.7 89 90-179 256-346 (471)
70 KOG1305|consensus 96.2 1.3 2.7E-05 42.7 20.6 59 70-128 194-253 (411)
71 COG1914 MntH Mn2+ and Fe2+ tra 96.0 1.5 3.3E-05 42.1 23.8 87 23-111 145-234 (416)
72 TIGR00794 kup potassium uptake 95.8 0.25 5.3E-06 50.1 14.1 227 3-244 169-408 (688)
73 PF13906 AA_permease_C: C-term 95.8 0.033 7.1E-07 36.2 5.3 48 258-308 1-50 (51)
74 PLN00148 potassium transporter 95.7 0.12 2.7E-06 52.6 11.4 224 3-241 198-434 (785)
75 PLN00151 potassium transporter 95.6 0.15 3.4E-06 52.1 11.6 225 3-242 275-512 (852)
76 TIGR00835 agcS amino acid carr 95.5 2.5 5.4E-05 40.8 21.3 176 3-182 167-364 (425)
77 PRK10745 trkD potassium transp 95.2 0.37 8E-06 48.1 12.6 227 3-245 144-383 (622)
78 PLN00149 potassium transporter 95.1 0.91 2E-05 46.6 15.5 228 3-242 199-439 (779)
79 PF01566 Nramp: Natural resist 94.9 3.4 7.4E-05 39.0 19.4 33 151-183 253-285 (358)
80 PLN00150 potassium ion transpo 94.2 0.46 1E-05 48.6 10.7 225 3-242 215-452 (779)
81 COG0733 Na+-dependent transpor 93.7 7 0.00015 37.6 19.0 174 7-186 149-334 (439)
82 PF00209 SNF: Sodium:neurotran 92.6 7.6 0.00016 38.8 16.6 105 12-120 190-299 (523)
83 COG3158 Kup K+ transporter [In 92.4 3.6 7.9E-05 40.5 13.2 231 3-251 149-394 (627)
84 PF02028 BCCT: BCCT family tra 91.8 14 0.0003 36.4 21.7 91 152-250 390-484 (485)
85 TIGR00800 ncs1 NCS1 nucleoside 91.6 14 0.00031 36.0 23.3 29 86-115 224-252 (442)
86 PF00474 SSF: Sodium:solute sy 90.9 3.2 7E-05 39.8 11.6 47 138-187 278-325 (406)
87 TIGR02358 thia_cytX probable h 90.9 15 0.00033 35.0 28.8 155 10-182 120-275 (386)
88 COG1115 AlsT Na+/alanine sympo 90.8 16 0.00035 35.2 21.8 181 3-183 184-382 (452)
89 PF12794 MscS_TM: Mechanosensi 90.3 14 0.00031 34.6 14.9 34 88-121 27-64 (340)
90 TIGR00813 sss transporter, SSS 90.2 18 0.00039 34.8 21.1 83 96-179 229-322 (407)
91 PRK10484 putative transporter; 90.2 21 0.00046 35.6 29.1 82 96-179 270-355 (523)
92 PRK00701 manganese transport p 88.5 26 0.00055 34.2 22.5 24 152-175 308-331 (439)
93 TIGR02121 Na_Pro_sym sodium/pr 85.2 41 0.00089 33.2 27.3 36 144-179 310-346 (487)
94 COG4858 Uncharacterized membra 82.4 17 0.00036 30.5 9.2 18 198-215 89-111 (226)
95 COG0591 PutP Na+/proline sympo 79.8 67 0.0015 31.9 24.9 41 139-179 312-353 (493)
96 PF06570 DUF1129: Protein of u 79.5 15 0.00031 31.8 8.7 17 294-310 184-200 (206)
97 PRK12488 acetate permease; Pro 78.6 78 0.0017 31.9 28.2 34 16-49 195-228 (549)
98 COG4025 Predicted membrane pro 78.1 29 0.00063 30.2 9.6 17 173-189 54-70 (284)
99 PF00558 Vpu: Vpu protein; In 72.8 6.3 0.00014 28.2 3.7 7 370-376 74-80 (81)
100 COG2271 UhpC Sugar phosphate p 71.6 50 0.0011 31.9 10.5 52 163-223 67-118 (448)
101 PRK09950 putative transporter; 65.8 1.5E+02 0.0032 29.6 20.8 94 152-250 400-498 (506)
102 PRK09928 choline transport pro 64.8 1.8E+02 0.0039 30.1 19.4 93 153-249 408-503 (679)
103 PF02133 Transp_cyt_pur: Perme 64.0 66 0.0014 31.2 10.2 34 9-42 144-177 (440)
104 KOG3660|consensus 63.9 1.8E+02 0.0039 29.9 17.9 48 2-49 215-263 (629)
105 PRK09395 actP acetate permease 56.8 2.2E+02 0.0048 28.6 28.6 32 13-44 194-225 (551)
106 PF07226 DUF1422: Protein of u 55.8 92 0.002 23.9 9.0 13 200-212 6-18 (117)
107 PF05656 DUF805: Protein of un 54.9 94 0.002 23.8 8.7 13 234-246 55-67 (120)
108 PTZ00206 amino acid transporte 54.9 2.2E+02 0.0047 28.0 12.9 50 144-193 126-176 (467)
109 COG3247 HdeD Uncharacterized c 54.0 1.4E+02 0.0029 25.3 10.8 21 198-218 14-34 (185)
110 PF14256 YwiC: YwiC-like prote 52.4 1.2E+02 0.0025 24.0 10.4 22 230-251 31-52 (129)
111 KOG2466|consensus 52.2 2.4E+02 0.0053 27.8 11.2 39 152-194 343-381 (572)
112 PRK11056 hypothetical protein; 51.7 1.1E+02 0.0024 23.6 8.7 6 257-262 61-66 (120)
113 PF11174 DUF2970: Protein of u 50.9 56 0.0012 21.6 4.9 45 73-120 2-46 (56)
114 PRK12585 putative monovalent c 46.4 1.8E+02 0.004 24.6 10.0 23 188-210 30-52 (197)
115 PRK12585 putative monovalent c 45.4 1.4E+02 0.0031 25.2 7.6 16 233-248 16-31 (197)
116 PF05975 EcsB: Bacterial ABC t 45.0 1.6E+02 0.0034 28.2 9.1 11 173-183 71-81 (386)
117 PF14667 Polysacc_synt_C: Poly 41.8 1.7E+02 0.0037 22.9 9.8 20 198-217 27-46 (146)
118 TIGR02711 symport_actP cation/ 41.5 3.9E+02 0.0084 26.9 25.8 29 16-44 195-223 (549)
119 PF09991 DUF2232: Predicted me 40.1 2.7E+02 0.006 24.9 18.1 95 153-251 158-257 (290)
120 PF09874 DUF2101: Predicted me 38.2 1.6E+02 0.0034 25.2 6.8 18 192-209 18-35 (206)
121 PF12597 DUF3767: Protein of u 37.2 63 0.0014 25.1 4.1 25 285-309 67-91 (118)
122 TIGR00842 bcct choline/carniti 34.3 4.6E+02 0.01 25.8 20.8 92 153-248 355-450 (453)
123 PF14316 DUF4381: Domain of un 33.0 66 0.0014 25.9 3.9 11 311-321 48-58 (146)
124 PTZ00370 STEVOR; Provisional 31.5 57 0.0012 29.5 3.4 22 294-316 268-289 (296)
125 PF14007 YtpI: YtpI-like prote 30.5 1.8E+02 0.0039 21.3 5.3 28 281-308 54-81 (89)
126 PRK00968 tetrahydromethanopter 30.1 61 0.0013 27.8 3.2 30 94-123 205-235 (240)
127 PF05297 Herpes_LMP1: Herpesvi 29.9 17 0.00038 32.5 0.0 20 194-213 13-32 (381)
128 PF11028 DUF2723: Protein of u 29.6 3.4E+02 0.0074 22.8 16.2 24 198-221 73-96 (178)
129 TIGR01300 CPA3_mnhG_phaG monov 29.3 2.4E+02 0.0053 21.0 6.1 20 188-207 20-39 (97)
130 PRK12489 anaerobic C4-dicarbox 27.6 5.3E+02 0.011 25.3 9.6 17 200-216 83-99 (443)
131 PRK00888 ftsB cell division pr 26.8 73 0.0016 24.1 2.9 9 355-363 68-76 (105)
132 PF02009 Rifin_STEVOR: Rifin/s 26.8 54 0.0012 30.1 2.6 19 292-310 267-285 (299)
133 TIGR01478 STEVOR variant surfa 24.3 83 0.0018 28.4 3.2 20 294-314 272-291 (295)
134 PF14002 YniB: YniB-like prote 24.3 66 0.0014 26.3 2.3 18 353-370 123-140 (166)
135 PHA02844 putative transmembran 24.1 1.2E+02 0.0025 21.3 3.2 31 90-120 29-59 (75)
136 COG4060 MtrD Tetrahydromethano 22.9 1E+02 0.0022 25.5 3.2 30 94-123 195-225 (230)
137 PF05961 Chordopox_A13L: Chord 22.4 2.2E+02 0.0048 19.6 4.2 20 288-307 7-26 (68)
138 PRK09458 pspB phage shock prot 22.2 2.6E+02 0.0055 19.8 4.6 11 299-309 19-29 (75)
139 PF03083 MtN3_slv: Sugar efflu 21.9 3E+02 0.0065 19.5 6.1 9 243-251 21-29 (87)
140 PRK03356 L-carnitine/gamma-but 21.8 8.1E+02 0.018 24.5 22.1 93 153-250 404-500 (504)
141 TIGR03648 Na_symport_lg probab 21.6 8.4E+02 0.018 24.5 25.7 28 152-179 367-394 (552)
142 PF14150 YesK: YesK-like prote 21.3 3.2E+02 0.007 19.6 7.3 10 246-255 18-27 (81)
143 PTZ00046 rifin; Provisional 20.8 89 0.0019 29.4 2.8 20 292-311 326-345 (358)
144 PRK11281 hypothetical protein; 20.8 1.2E+03 0.026 26.0 14.8 32 89-120 524-559 (1113)
145 COG1955 FlaJ Archaeal flagella 20.7 6.2E+02 0.013 25.2 8.4 27 336-362 321-347 (527)
146 KOG4303|consensus 20.2 3.2E+02 0.0068 25.8 6.1 98 19-122 256-353 (524)
147 PF03169 OPT: OPT oligopeptide 20.2 9.4E+02 0.02 24.6 12.2 49 74-122 435-485 (624)
148 PF07301 DUF1453: Protein of u 20.1 4.8E+02 0.01 21.2 7.1 30 255-284 26-56 (148)
149 TIGR01477 RIFIN variant surfac 20.1 93 0.002 29.1 2.8 20 292-311 321-340 (353)
No 1
>KOG1287|consensus
Probab=100.00 E-value=3.2e-48 Score=362.15 Aligned_cols=333 Identities=50% Similarity=0.874 Sum_probs=315.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCCCCCChhhHHHHHHHHhH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHP-MQNSNWDPGYVALSFYSGLF 81 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (378)
-+++.+++++++.+|+.++|+..++|.++++.|+++++++++.|+.....++.+|+.++ ++++..+.+.+..++....|
T Consensus 136 ~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglf 215 (479)
T KOG1287|consen 136 KLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLF 215 (479)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhh
Confidence 36788999999999999999999999999999999999999999998888888887765 88888888889999999999
Q ss_pred hccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHHHHH
Q psy9213 82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVS 161 (378)
Q Consensus 82 ~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (378)
+|.|||.....+||+|||+||+|||+..++.++++.|+++.++....+++|++.+++..+..++++.+|.+.+++.+.+.
T Consensus 216 a~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~Va 295 (479)
T KOG1287|consen 216 AFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVA 295 (479)
T ss_pred cccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy9213 162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSV 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 241 (378)
++++++.|+.+++.||.++++||+|++|+.|++.|+|+.+|..++++.+..++++.+.+|++++++..++..++.+.+..
T Consensus 296 lS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~ 375 (479)
T KOG1287|consen 296 LSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSM 375 (479)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999777799999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHhhhheeecCCcchhhhhhh
Q psy9213 242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVK-PWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVF 320 (378)
Q Consensus 242 ~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (378)
++++++|+|+|+.+||+|.|...|++.++.++++++.+...+ +....+++..++.|+.+|+...++++|++|.+...++
T Consensus 376 ~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~ 455 (479)
T KOG1287|consen 376 AGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISES 455 (479)
T ss_pred HHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHH
Confidence 999999999999999999999999999999999999999888 5668899999999999999999999999999999999
Q ss_pred hhcccCCCccchhhhhhhhhhhh
Q psy9213 321 IGSRMVGTTTRNMQQARNMMGKL 343 (378)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~ 343 (378)
. ++..|++.+..++.
T Consensus 456 i--------t~~~q~l~~~v~~~ 470 (479)
T KOG1287|consen 456 I--------TRVCQKLFNVVPDE 470 (479)
T ss_pred H--------HHHHHHHHHhcCcc
Confidence 9 88999988887664
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=4.6e-43 Score=345.04 Aligned_cols=319 Identities=48% Similarity=0.937 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCCCCCCChhhHHHHHHHHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENI--AHPMQNSNWDPGYVALSFYSGL 80 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (378)
.+++++++++.+.+|++|+|.++++|++++.++++.++++++.++....+++..+. ...+++...+..++..++..++
T Consensus 166 ~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~ 245 (501)
T TIGR00911 166 RLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGI 245 (501)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHH
Confidence 35677788899999999999999999999999999999888888776544333222 1223333345667888999999
Q ss_pred HhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHHHH
Q psy9213 81 FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFV 160 (378)
Q Consensus 81 ~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (378)
|+|.|+|.+++++||+|||+|++|||+..++.+++++|++..++.....|++++.++++....+.....|....++.+.+
T Consensus 246 ~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~ 325 (501)
T TIGR00911 246 WAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALV 325 (501)
T ss_pred HHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899998876655555556666665667788888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy9213 161 SCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTS 240 (378)
Q Consensus 161 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~ 240 (378)
.++.+++.++.+.+.||++++|||||.+|++|+|+|||+++|++++++.+++++++...++++++.++.+...++.|.+.
T Consensus 326 ~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~ 405 (501)
T TIGR00911 326 GLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALA 405 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998888778888888888899999999999
Q ss_pred HHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheeecCCcchhhhhhh
Q psy9213 241 VTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVF 320 (378)
Q Consensus 241 ~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (378)
.++.+++|+|+|+.+||||.|.+.+.++++.++++++.+...++.....+..+.++|..+|+...+++++++|.+....+
T Consensus 406 ~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~ 485 (501)
T TIGR00911 406 VAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWFRYLIVS 485 (501)
T ss_pred HHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHhhccccce
Confidence 99999999999999999999998888888888888887777776666778888889999888655666666766554443
Q ss_pred h
Q psy9213 321 I 321 (378)
Q Consensus 321 ~ 321 (378)
.
T Consensus 486 ~ 486 (501)
T TIGR00911 486 K 486 (501)
T ss_pred e
Confidence 3
No 3
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=325.48 Aligned_cols=318 Identities=19% Similarity=0.233 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCCC---CCCCChhhHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIA---HPMQ---NSNWDPGYVALSF 76 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~ 76 (378)
+++..++++++..+|++|+|.+|+.+.+++.+|+++++++++.++....++.+.+-. +.+. ....++.++...+
T Consensus 161 ~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~ 240 (541)
T COG0833 161 WIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVF 240 (541)
T ss_pred HHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHH
Confidence 578889999999999999999999999999999999999999999988776554211 1111 1334588999999
Q ss_pred HHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhh--h-------cchhHHHHHHHh
Q psy9213 77 YSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEEL--L-------SSNTVAVTFGAK 147 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l--~-------~~~~~~~~~~~~ 147 (378)
+.+.|+|+|.|.+...|+|+|||+|++|||++..+.++.++|++..+.+...+|+++- . .++|....+.+.
T Consensus 241 v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~ 320 (541)
T COG0833 241 VIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNA 320 (541)
T ss_pred hhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhc
Confidence 9999999999999999999999999999999999999999999999999999998762 2 224566667777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh------h
Q psy9213 148 ILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID------D 221 (378)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~------~ 221 (378)
+.+.++.+++++++++.++++|++++++||++|+||+||..||+|+|+| |+|+|++|++++.+++++.++.. .
T Consensus 321 Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~v 399 (541)
T COG0833 321 GIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTV 399 (541)
T ss_pred CCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchH
Confidence 7777899999999999999999999999999999999999999999999 99999999999999999876632 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-----CCCccchh--HHHHHHHHHHHHHHHhcCcccc-------hHH
Q psy9213 222 VFALINYATFVESSFTLTSVTGLLWLRLKRPDL-----KRPIKVSI--ILPITFFIIAAFLVTLPMYVKP-------WEV 287 (378)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~ 287 (378)
++++.++.++..++.|+.++++++++||..... +-|||.|. +.++.++++|+.+++...+... ...
T Consensus 400 f~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F 479 (541)
T COG0833 400 FNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDF 479 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHH
Confidence 678999999999999999999999999863222 34899998 7899999998888877444321 122
Q ss_pred HHHHHHHHHHHHHHhhhheeecCCcchhhhhhhh
Q psy9213 288 GIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFI 321 (378)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (378)
.....-+.+.+++|..++.++|..++.+..+.|+
T Consensus 480 ~~~Yl~~pi~i~~y~~yk~~~k~~~~~~l~~iDl 513 (541)
T COG0833 480 FAAYLGLPIFIAIYIGYKLYKKTTKFVRLEEIDL 513 (541)
T ss_pred HHHHHHHHHHHHHHHHheeEecccccccHHHcCc
Confidence 3333334444445555554544345666766766
No 4
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=3.9e-40 Score=325.66 Aligned_cols=301 Identities=22% Similarity=0.276 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC--C--C-CCCChhhHHHHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPM--Q--N-SNWDPGYVALSFYS 78 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~~ 78 (378)
.++++++++.+.+|.+|+|.++++|++++++|++.++++++.++... +++++.... + + .+.++.+++.+...
T Consensus 163 ~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~ 239 (557)
T TIGR00906 163 FFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITEEKGAGGFMPYGFTGVLSGAAT 239 (557)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---CchhccccccccCCCCCCcchHHHHHHHHH
Confidence 45677788889999999999999999999999999998888887653 334443211 1 1 12345678899999
Q ss_pred HhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHH
Q psy9213 79 GLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPL 158 (378)
Q Consensus 79 ~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (378)
++|+|.|+|++++++||+|||+|++|||+..++.+++++|++..++..+.+|++++..+++....+.....++...++.+
T Consensus 240 ~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~ 319 (557)
T TIGR00906 240 CFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAV 319 (557)
T ss_pred HHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655554444444444556778888
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy9213 159 FVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTL 238 (378)
Q Consensus 159 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 238 (378)
+.+.+.+++.++.+++.+|++|+|||||.+|++|+|+|||+++|++|+++.++++.++.+..+++.+.++.+++.++.|.
T Consensus 320 ~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~ 399 (557)
T TIGR00906 320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYS 399 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998887777888899999999999999
Q ss_pred HHHHHHhhhhcc--------------------------------------------------------------------
Q psy9213 239 TSVTGLLWLRLK-------------------------------------------------------------------- 250 (378)
Q Consensus 239 ~~~~~~~~~r~~-------------------------------------------------------------------- 250 (378)
+.+++.+++|++
T Consensus 400 lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (557)
T TIGR00906 400 LVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALL 479 (557)
T ss_pred HHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Confidence 999999998843
Q ss_pred ----------------CCCC--CCCccchh--HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheeecC
Q psy9213 251 ----------------RPDL--KRPIKVSI--ILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDK 310 (378)
Q Consensus 251 ----------------~~~~--~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (378)
+|+. +|+||.|. ++|.++++.|.+++.- .+..++....+|+.+|+++|+.+.++|.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~---l~~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 480 TLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQ---LDADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 2333 56899998 7999999999998864 34567778889999999999988776654
No 5
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6.1e-40 Score=318.59 Aligned_cols=300 Identities=19% Similarity=0.278 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC---CCCCCChhhHHHHHHHHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPM---QNSNWDPGYVALSFYSGL 80 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (378)
.++.+++.+++.+|++|+|.++++|++++++|++.++++++.++..... +++.++. .+...++.++..++..++
T Consensus 129 ~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 205 (445)
T PRK11357 129 FIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKA---ENFAAPTTTAIGATGSFMALLAGISATS 205 (445)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccccCCCcccccccchHHHHHHHHHHHH
Confidence 4566677778899999999999999999999999888888877654322 2222211 111223567788899999
Q ss_pred HhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhh--hh-hhhhHHH
Q psy9213 81 FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI--LP-MLTWLMP 157 (378)
Q Consensus 81 ~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-~~~~~~~ 157 (378)
|+|.|+|.+++++||+|||+|++|||+..++.+++++|++...+.....|++++.+++.+.....+.. .+ +.+.++.
T Consensus 206 ~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~ 285 (445)
T PRK11357 206 WSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVA 285 (445)
T ss_pred HHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877655554444432 33 3456667
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy9213 158 LFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFT 237 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 237 (378)
+..+++.+++.++.+.+.+|++|+|||||.+|++|+|+|||+++|++|+++++++++++....+++.+.+..+...++.|
T Consensus 286 ~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (445)
T PRK11357 286 ITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKN 365 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999988888889899999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCCccchh--HHHHHHHHHHHHHHHhcCcccchH-HHHHHHHHHHHHHHHhhhhee
Q psy9213 238 LTSVTGLLWLRLKRPDLKRPIKVSI--ILPITFFIIAAFLVTLPMYVKPWE-VGIGLLMILSGIPVYMVFVYW 307 (378)
Q Consensus 238 ~~~~~~~~~~r~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (378)
.+...+.+++|+++ +.+||||.|. ..++++++.++++.......++.. ...++.++++|+.+|+.++++
T Consensus 366 ~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 366 TLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred HHHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheech
Confidence 99999999888764 5678999987 477888877777766554455543 445778888998888754433
No 6
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6.7e-39 Score=313.97 Aligned_cols=281 Identities=16% Similarity=0.217 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CCCCCCCCCC---CChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTE-----NIAHPMQNSN---WDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~ 74 (378)
|+++.+++++.+++|++|+|.++++|++++++|++.++++++.++.....+++. ++.+..++.+ .++.+++.
T Consensus 145 ~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~ 224 (499)
T PRK15049 145 WVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALV 224 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHH
Confidence 567788889999999999999999999999999999998888877654433221 1111111111 22344556
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHH-Hhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFG-AKILPMLT 153 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 153 (378)
++..+.|+|.|+|.+++++||+|||+|++|||+..++.++.++|++..+.....+|++++..+..+..... ..+.++.+
T Consensus 225 ~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~ 304 (499)
T PRK15049 225 LIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIG 304 (499)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHH
Confidence 67789999999999999999999999999999999999999999999999999999988865544544433 33445577
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh------hhhHHHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC------IDDVFALIN 227 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~------~~~~~~l~~ 227 (378)
.+++++++++.+++.|+.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+ .+.++.+.+
T Consensus 305 ~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~ 383 (499)
T PRK15049 305 SIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLN 383 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999 899999999999887655322 134667999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCC---CCCCccchh--HHHHHHHHHHHHHHHhcCcccc
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLKRPD---LKRPIKVSI--ILPITFFIIAAFLVTLPMYVKP 284 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~~~~---~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 284 (378)
+.+...++.|.+++++++++|++.++ .+||||.|. +.++++++.++++++...+..|
T Consensus 384 ~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 445 (499)
T PRK15049 384 FASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYP 445 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999876433 357899987 4666666666555544444433
No 7
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.9e-38 Score=307.95 Aligned_cols=298 Identities=20% Similarity=0.255 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCC-C---CCChhhHHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAH-PMQN-S---NWDPGYVALSFY 77 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~ 77 (378)
+..+.+++++.+.+|++|+|.++++|.++++++++.++++++.+. ...++.++.+ ++.+ + +.++.++..++.
T Consensus 122 ~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (442)
T TIGR00908 122 WLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMV---PHFDSANLFNGPQTGASSFLPGAYVGVFAAIP 198 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---ccCCHHHhccCCccCCCCCCCccHHHHHHHHH
Confidence 456777888899999999999999999999998887655543322 1112222221 1111 1 123456788888
Q ss_pred HHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhh---hhhh
Q psy9213 78 SGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILP---MLTW 154 (378)
Q Consensus 78 ~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~ 154 (378)
.++|+|.|+|.+++++||+|||+|++|||+..++..+.++|+.......+..+++++.+++.+......+.++ +...
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~ 278 (442)
T TIGR00908 199 FAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQ 278 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHH
Confidence 8999999999999999999999999999999999999999998877777778888886655555555555443 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVES 234 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 234 (378)
++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+| |+|+|++|++++++++.++.+.++.+.+.++.++..+
T Consensus 279 ~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~ 357 (442)
T TIGR00908 279 FVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAI 357 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666777788899999999999999999999999999999999 9999999999999999888777777778889999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCccchh--HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhh
Q psy9213 235 SFTLTSVTGLLWLRLKRPDLKRPIKVSI--ILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVF 304 (378)
Q Consensus 235 ~~~~~~~~~~~~~r~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (378)
+.|.+++++++++|+++|+.+||||.|. +.++++++.++++++.....++........+.+++.+.|+.+
T Consensus 358 ~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 429 (442)
T TIGR00908 358 ISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLY 429 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999986 678888888877777665555533333445555555555544
No 8
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=3.3e-38 Score=305.97 Aligned_cols=296 Identities=16% Similarity=0.179 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CChhhHHHHHHHHhHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN-WDPGYVALSFYSGLFS 82 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (378)
+++.+++++.+.+|++|+|..+++|++.+..+++.++++++.++... +++++.+.+++.+ ..+.++..++..++|+
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWF---SPSLYVAAWNPHHLPFFSAVGSSIAMTLWA 201 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcccccCCcCccCCchHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999999888888877766553 2334433343322 2245677888899999
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhh-hhhhhHHHHHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKIL-PMLTWLMPLFVS 161 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 161 (378)
|.|+|.+++++||+|||+|++|||+..+..+++++|++.........|++++.+++.+......+.+ ++...++.+..+
T Consensus 202 f~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~ 281 (438)
T PRK10655 202 FLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMV 281 (438)
T ss_pred HhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888888898888765555444444444 445677788888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHH
Q psy9213 162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------DDVFALINYATFVES 234 (378)
Q Consensus 162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-------~~~~~l~~~~~~~~~ 234 (378)
++.+++.++.+.+.+|++++|+|||.+|++|+|+| |+++|++|++++.+++.++.+. ++++.+.++.++..+
T Consensus 282 is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~ 360 (438)
T PRK10655 282 MSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNI 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 7899999999999887664432 356779999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhhe
Q psy9213 235 SFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVY 306 (378)
Q Consensus 235 ~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (378)
+.|.+.+++.+++|+|+++.+||||.+..++.++.+.+++.++. .+......+..++++|.++|....+
T Consensus 361 i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (438)
T PRK10655 361 IPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALYS---SGEEAMLYGSIVTFLGWTLYGLISP 429 (438)
T ss_pred HHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899998877788888777755432 2223456678888889888865443
No 9
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=3.4e-38 Score=309.33 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C----CCCCCCCCCCCCCChhhHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMG---N----TENIAHPMQNSNWDPGYVALS 75 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~ 75 (378)
+.++.+++++++.+|++|+|..++.|+++++.|+..++.+++.++...... + .+++.++..+...++.++..+
T Consensus 131 ~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (489)
T PRK10836 131 WIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGV 210 (489)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHH
Confidence 345667777889999999999999999999999999888887777653221 1 112211111111234455555
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhh---c------chhHHHHHHH
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL---S------SNTVAVTFGA 146 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~---~------~~~~~~~~~~ 146 (378)
....+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++........+|+++.. + .++....+..
T Consensus 211 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~ 290 (489)
T PRK10836 211 AMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQH 290 (489)
T ss_pred HHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHH
Confidence 556789999999999999999999999999999999999999999998888888866532 1 1222333444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh------
Q psy9213 147 KILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID------ 220 (378)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~------ 220 (378)
...++...+++++++++.+++.|+.+++.||++|+|||||.+|++|+|+| |+|+|++|++++.+++.+..+..
T Consensus 291 ~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~ 369 (489)
T PRK10836 291 AGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQT 369 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHH
Confidence 44455678888999999999999999999999999999999999999999 78999999999999888765532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCCCC-CCccchh--HHHHHHHHHHHHHHHhcCcccc---hHHHHH
Q psy9213 221 DVFALINYATFVESSFTLTSVTGLLWLRLK----RPDLK-RPIKVSI--ILPITFFIIAAFLVTLPMYVKP---WEVGIG 290 (378)
Q Consensus 221 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~~-r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 290 (378)
.++++.++.++..++.|.+.+++++++||+ +++.+ ||||.|. +.+.++++.++++++....... .....+
T Consensus 370 ~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (489)
T PRK10836 370 VYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGG 449 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHH
Confidence 355688999999999999999999999985 45544 7999988 6788888888777765433321 113345
Q ss_pred HHHHHHHHHHHhhh---heeecCCcchhhhhhhh
Q psy9213 291 LLMILSGIPVYMVF---VYWKDKPRWLNNIAVFI 321 (378)
Q Consensus 291 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 321 (378)
++..++|+.+|... ++.++|+++.+..+.|+
T Consensus 450 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (489)
T PRK10836 450 VAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKF 483 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCCcCCHHHcCC
Confidence 55666666655422 22333444555555555
No 10
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=8.3e-38 Score=303.79 Aligned_cols=305 Identities=14% Similarity=0.190 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCC---CCCCCCCC----CCCChhhHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLA--MGNTE---NIAHPMQN----SNWDPGYVA 73 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--~~~~~---~~~~~~~~----~~~~~~~~~ 73 (378)
+.+..+++++.+.+|++|+|.++++|.+++.+|++.++++++.++.... .++.. ++.+ +.+ .+.++.++.
T Consensus 125 ~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~g~~g~~ 203 (461)
T PRK10746 125 WIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSN-LTEHGGFFAGGWKGFL 203 (461)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccc-ccCCCCcCcccHHHHH
Confidence 4566777888899999999999999999999999999888887775431 11111 1111 111 123467888
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhH-HHHHHHhhhhhh
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTV-AVTFGAKILPML 152 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 152 (378)
.++..+.|+|.|+|.++.++||+|||+|++|||++.++.++.++|++..+.....+|++++..++.+ ...+.+...+..
T Consensus 204 ~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~ 283 (461)
T PRK10746 204 TALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAA 283 (461)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999988755434 334444444556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHH----hh---h-hHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLM----CI---D-DVFA 224 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~----~~---~-~~~~ 224 (378)
..+++++++++.+++.|+.+++.||++++|||||.+|++|+|+| |+|+|++|+++..+..++.. .. + .++.
T Consensus 284 ~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~ 362 (461)
T PRK10746 284 AGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVY 362 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 78889999999999999999999999999999999999999999 89999999998865543321 11 2 3566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCC--CCCCccchh--HHHHHHHHHHHHHHHhcCcccc--hHHHHHHHHHHHHH
Q psy9213 225 LINYATFVESSFTLTSVTGLLWLRLKRPD--LKRPIKVSI--ILPITFFIIAAFLVTLPMYVKP--WEVGIGLLMILSGI 298 (378)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 298 (378)
+.+++++...+.|..++++++++||++++ .++|||.|. +.+.++++.++.++......+. .+...++.+++++.
T Consensus 363 l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (461)
T PRK10746 363 VYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVT 442 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998875 356899876 4566666555555444322221 45566777777777
Q ss_pred HHHhhhheeec
Q psy9213 299 PVYMVFVYWKD 309 (378)
Q Consensus 299 ~~~~~~~~~~~ 309 (378)
+.|..+++++|
T Consensus 443 ~~y~~~~~~~~ 453 (461)
T PRK10746 443 LIYKVFGLNRH 453 (461)
T ss_pred HHHHHHHhhhh
Confidence 77776655544
No 11
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1e-37 Score=302.36 Aligned_cols=310 Identities=16% Similarity=0.195 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCCCCCC---CCCChhhHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNT----ENIAHPMQN---SNWDPGYVALS 75 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~ 75 (378)
+.++.+++++.+.+|++|+|.++++|.+++++|++.++++++.++....+.++ .++.+.+++ .+.++.++..+
T Consensus 107 ~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a 186 (446)
T PRK10197 107 WLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSA 186 (446)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHH
Confidence 46678888999999999999999999999999999999988887765432221 111111111 12345688899
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc--hhHHHHHHHhhhhhhh
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS--NTVAVTFGAKILPMLT 153 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 153 (378)
+..+.|+|.|+|.++.++||+|||+|++|||++.++..+.++|++..+.....+|+++...+ ++..........++..
T Consensus 187 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~ 266 (446)
T PRK10197 187 MLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAK 266 (446)
T ss_pred HHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHH
Confidence 99999999999999999999999999999999999999999999999998888888764322 2222223333344566
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI------DDVFALIN 227 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~------~~~~~l~~ 227 (378)
.+++++++++.+++.|+++++.+|++|+|||||.+|++|+|+| |+|+|++|++++.+++++..+. +.++.+.+
T Consensus 267 ~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~ 345 (446)
T PRK10197 267 LIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLID 345 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999 8999999999998877765443 25677999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc--CCCCCCCccchh--HHHHHHHHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHh
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLK--RPDLKRPIKVSI--ILPITFFIIAAFLVTLPMYV-KPWEVGIGLLMILSGIPVYM 302 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~--~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 302 (378)
..+...++.|.+++++.+++||+ +++.++|||.|. +.+.+++..+++++....++ ++.....+..++++++..|+
T Consensus 346 ~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (446)
T PRK10197 346 SSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTV 425 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999986 334466899875 46666666665555443333 34445557777888888887
Q ss_pred -hhheeecCCcc
Q psy9213 303 -VFVYWKDKPRW 313 (378)
Q Consensus 303 -~~~~~~~~~~~ 313 (378)
..++++|.+.|
T Consensus 426 ~~~~~~~~~~~~ 437 (446)
T PRK10197 426 PIMARWKKLVLW 437 (446)
T ss_pred HHHhhhcccccC
Confidence 55665555443
No 12
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.4e-37 Score=303.71 Aligned_cols=301 Identities=15% Similarity=0.208 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCCCCCCCCCC---CChhhHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMG------NTENIAHPMQNSN---WDPGYVA 73 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~ 73 (378)
+...+++.++++.+|++|+|.+++.|.+++.+|++.++++++.++...... ++.....++++.+ .+..++.
T Consensus 130 ~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 209 (471)
T PRK11387 130 WPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPIL 209 (471)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHH
Confidence 345556677889999999999999999999999999988888776543211 1111111122111 1234678
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhh-hhhh
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI-LPML 152 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 152 (378)
.++..++|+|.|+|.+++++||+|||+|++|||+..++.++.++|++..+......|+++...++.+.....++. .++.
T Consensus 210 ~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~ 289 (471)
T PRK11387 210 MTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYA 289 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchH
Confidence 888889999999999999999999999999999999999999999999999988899887764444444444443 4456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----h-hHHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----D-DVFALI 226 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~-~~~~l~ 226 (378)
..++++.++++.+++.++++++.||++|+|||||.+|++|+|+| |+++|++|++++.+++++.++. + .++.+.
T Consensus 290 ~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~ 368 (471)
T PRK11387 290 ADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALS 368 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999 7899999999887766544332 1 244588
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCC-----CCCCccchh--HHHHHHHHHHHHHHHhcCcccc--hHHHHHHHHHHHH
Q psy9213 227 NYATFVESSFTLTSVTGLLWLRLKRPD-----LKRPIKVSI--ILPITFFIIAAFLVTLPMYVKP--WEVGIGLLMILSG 297 (378)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 297 (378)
++.+...++.|...+++.+++|+++++ .+||||.|. +.+.++++.+.+++......++ .....++.+++++
T Consensus 369 ~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T PRK11387 369 AISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALC 448 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999987653 247899987 6788888777766654322222 1244566667777
Q ss_pred HHHHhhh
Q psy9213 298 IPVYMVF 304 (378)
Q Consensus 298 ~~~~~~~ 304 (378)
.+.|..+
T Consensus 449 ~~~~~~~ 455 (471)
T PRK11387 449 YGAYYLT 455 (471)
T ss_pred HHHHHHh
Confidence 7666544
No 13
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=5.4e-37 Score=297.84 Aligned_cols=295 Identities=17% Similarity=0.217 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCChhhHHHHHHHHhHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNS-NWDPGYVALSFYSGLFS 82 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (378)
+++.+++++++.+|++|+|..+++|++++.++++.++++++.++..... +++.+.+++. ..++.++..++..++|+
T Consensus 127 ~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a 203 (445)
T PRK10644 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG---ETYMAAWNVSGLGTFGAIQSTLNVTLWS 203 (445)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---hhccCCccccccchHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999888888877654322 2332222221 22455677788899999
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVS 161 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 161 (378)
|.|+|.+++++||+|||+|++|||+..++.+++++|++..++....+|++++..++.+......+.+| +...++.+..+
T Consensus 204 f~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~ 283 (445)
T PRK10644 204 FIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAA 283 (445)
T ss_pred HHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887665555555555544 45567777888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHH
Q psy9213 162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------DDVFALINYATFVES 234 (378)
Q Consensus 162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-------~~~~~l~~~~~~~~~ 234 (378)
++.+++.++.+...+|++++|||||.+|++|+|+| |+++|++|++++++++.++.+. +.++.+.++.++..+
T Consensus 284 ~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~l 362 (445)
T PRK10644 284 AGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTL 362 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 6899999999999988775543 247779999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhhee
Q psy9213 235 SFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYW 307 (378)
Q Consensus 235 ~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (378)
+.|.+++++.+++|+|+++.+||+. .++++++++.++++++. .++.+...+..+..++.++|+..+++
T Consensus 363 i~y~~~~~~~~~l~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~ 430 (445)
T PRK10644 363 VPYLYTCAALLLLGHGHFGKARPAY--LAVTLIAFVYCIWAVVG---SGAKEVMWSFVTLMVITAFYALNYNR 430 (445)
T ss_pred HHHHHHHHHHHHHhhcCCcccccch--hHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988776556642 25788888888887753 34455666777777888877655443
No 14
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.6e-37 Score=302.92 Aligned_cols=315 Identities=18% Similarity=0.203 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------CCC--CCCCC--CCChhhHHH
Q psy9213 6 FILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN-------IAH--PMQNS--NWDPGYVAL 74 (378)
Q Consensus 6 ~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-------~~~--~~~~~--~~~~~~~~~ 74 (378)
..+++++.+++|++|+|.++++|++++.+|++.++.+++.++.....+.++. +.+ .+.+. ...+.++..
T Consensus 122 ~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (478)
T TIGR00913 122 IAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCS 201 (478)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHH
Confidence 3456677889999999999999999999999999888887776553322111 111 12111 112567888
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhh--hhcc-------hhHHHHHH
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEE--LLSS-------NTVAVTFG 145 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--l~~~-------~~~~~~~~ 145 (378)
++..+.|+|.|+|.+++++||+|||+|++|||+..+..+++++|++..++.....|+++ +.++ +.+.....
T Consensus 202 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~ 281 (478)
T TIGR00913 202 VFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAI 281 (478)
T ss_pred HHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999888777777664 2221 12322222
Q ss_pred Hh-hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----
Q psy9213 146 AK-ILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI----- 219 (378)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~----- 219 (378)
+. ..++...++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+| |+++|++|++++++++++..+.
T Consensus 282 ~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~ 360 (478)
T TIGR00913 282 QNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKE 360 (478)
T ss_pred HHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccCh
Confidence 22 2345667888899999999999999999999999999999999999999 8899999999999987664332
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----CCCCCCCccchh--HHHHHHHHHHHHHHHhcCc---c----cc
Q psy9213 220 -DDVFALINYATFVESSFTLTSVTGLLWLRLK-----RPDLKRPIKVSI--ILPITFFIIAAFLVTLPMY---V----KP 284 (378)
Q Consensus 220 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~---~----~~ 284 (378)
..++.+.++.+....+.|.+.+++.+++|++ +++.+||||.|. +.+.++++.++++++...+ . +.
T Consensus 361 ~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 440 (478)
T TIGR00913 361 AEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSA 440 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 1366699999999999999999999999875 234468999987 5666666665555443222 1 12
Q ss_pred hHHHHHHHHHHHHHHHHhhhheeecCCcchhhhhhhh
Q psy9213 285 WEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFI 321 (378)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (378)
.........+...+.+|..++.++|+++|.++.+.|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (478)
T TIGR00913 441 KSFFEAYLSLPIFIALYIGHKVYKRDKLIIKLDDIDL 477 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcCCHHhcCC
Confidence 3333444555555556665555555555555555443
No 15
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=289.17 Aligned_cols=302 Identities=19% Similarity=0.231 Sum_probs=243.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CCCCCCCC---CCCChhhHH
Q psy9213 2 EYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTE-----NIAHPMQN---SNWDPGYVA 73 (378)
Q Consensus 2 ~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~ 73 (378)
+|+.++++.++...+|+.++|.+|+.|++++.+|+++++.+++.|+.....+.+. .+++-++. .+.++.++.
T Consensus 127 ~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~ 206 (462)
T COG1113 127 QWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFL 206 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHH
Confidence 5889999999999999999999999999999999999999999999887654222 23332222 345678899
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcch-hHHHHHHHhhhhhh
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSN-TVAVTFGAKILPML 152 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 152 (378)
.++..+.|+|.|.|.+...|+|+|||+|++|||+.....++.++|+.....+....|+++..++. +....+...+.+..
T Consensus 207 ~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~A 286 (462)
T COG1113 207 SALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFA 286 (462)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999987665 45555666677888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh------hhHHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI------DDVFALI 226 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~------~~~~~l~ 226 (378)
..+++.+++++.+++.|+.+++++|++|++|+||..|+.|+|+| |+|+|+++++++++...+..+. +.+..+.
T Consensus 287 a~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~ 365 (462)
T COG1113 287 AGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVT 365 (462)
T ss_pred ccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 89999999999999999999999999999999999999999999 9999999999999877664433 2455688
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCC--CCccchh--HHHHHHHHHHHHHHHhcCcccc--hHHHHHHHHHHHHHHH
Q psy9213 227 NYATFVESSFTLTSVTGLLWLRLKRPDLK--RPIKVSI--ILPITFFIIAAFLVTLPMYVKP--WEVGIGLLMILSGIPV 300 (378)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 300 (378)
+..+......|.++.++.+++||++++.. .+||+|. +...+.+...++++......+. .....+..++++..+.
T Consensus 366 s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~ 445 (462)
T COG1113 366 SSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIG 445 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999654433 2588886 3444444333333332222222 3445555555555555
Q ss_pred Hhhh
Q psy9213 301 YMVF 304 (378)
Q Consensus 301 ~~~~ 304 (378)
|+..
T Consensus 446 ~~~~ 449 (462)
T COG1113 446 YLVK 449 (462)
T ss_pred HHHh
Confidence 5433
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=3.5e-37 Score=298.26 Aligned_cols=290 Identities=22% Similarity=0.315 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhcc
Q psy9213 5 LFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYS 84 (378)
Q Consensus 5 ~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
.+++++++.+.+|++|+|..+++|.+++.++++.++++++.++... +.+++.+.. +.+..++..++....|+|.
T Consensus 136 ~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~af~ 209 (429)
T TIGR00909 136 PALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF---ASNNYTPFM---PMGFGGVGAATALVFFAFI 209 (429)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cHHhcCCCC---CCcHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999998887777666543 223333221 2245678889999999999
Q ss_pred ChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHHHH
Q psy9213 85 GWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVSCS 163 (378)
Q Consensus 85 G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (378)
|+|.+++++||+|||+|++||++..+..++.++|++..+......|++++.+++.+......+..+ +...++.+..+++
T Consensus 210 G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 289 (429)
T TIGR00909 210 GFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFS 289 (429)
T ss_pred hHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998889999887666555545444443 4667889999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 164 TFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTG 243 (378)
Q Consensus 164 ~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (378)
.+++.++.+.+.+|+++++||||.+|++|+|+|||+++|++|+++.++++.++....+++.+.++.+...++.|.+.+++
T Consensus 290 ~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a 369 (429)
T TIGR00909 290 IASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVA 369 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888777788889999999999999999999
Q ss_pred HhhhhccCCCCCCCccchh--HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhh
Q psy9213 244 LLWLRLKRPDLKRPIKVSI--ILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMV 303 (378)
Q Consensus 244 ~~~~r~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (378)
.+++|+|+|+.+||||.|. +.+.+.+..+.++.. ..++.+......+..+|..+|..
T Consensus 370 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 370 VIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLL---NLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887 344444444444332 24566777888999999988753
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1e-36 Score=297.39 Aligned_cols=273 Identities=21% Similarity=0.292 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CC----CCCCCCCCCC---CCChhhHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMG--NT----ENIAHPMQNS---NWDPGYVA 73 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~----~~~~~~~~~~---~~~~~~~~ 73 (378)
+..+.+++++++.+|++|+|..+++|++.+.+|++.++++++.++.....+ ++ .++.+.+++. +.++.++.
T Consensus 135 ~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~ 214 (469)
T PRK11049 135 WVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFF 214 (469)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHH
Confidence 345667788889999999999999999999999999999999888754321 11 1222222221 12345688
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHH-HHhhhhhh
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTF-GAKILPML 152 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 152 (378)
.++...+|+|.|+|.+++++||+|||+|++|||+..+.+.+.++|++.........|++++.+++.+.... .....++.
T Consensus 215 ~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 294 (469)
T PRK11049 215 AGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAA 294 (469)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhH
Confidence 99999999999999999999999999999999999888889999999999988888999886654444433 33344557
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHH---Hh-h----hhHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLL---MC-I----DDVFA 224 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~---~~-~----~~~~~ 224 (378)
..++.+.++++.+++.++.+.+.||++|+|||||.+|++|+|+| |+|+|++|++++++++.+. .. . +.++.
T Consensus 295 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (469)
T PRK11049 295 ASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTL 373 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 78888899999999999999999999999999999999999999 6799999999998765431 11 1 23556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CCccchh--HHHHHHHHHHHHHH
Q psy9213 225 LINYATFVESSFTLTSVTGLLWLRLKRPDLK--RPIKVSI--ILPITFFIIAAFLV 276 (378)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--r~~~~~~--~~~~~~~~~~~~~~ 276 (378)
+.++.++...+.|.+..++++++|+++|+.+ ||||.|. +.++++++.+.+.+
T Consensus 374 l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~ 429 (469)
T PRK11049 374 VTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVL 429 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHH
Confidence 8888999999999999999999999987765 5899876 35555555554444
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.5e-36 Score=295.13 Aligned_cols=276 Identities=18% Similarity=0.236 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCCCCCC---CCCChhhHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNT---ENIAHPMQN---SNWDPGYVALSF 76 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~ 76 (378)
+.++.+++++.+++|++|+|.++++|.+++++|++.++++++.++.....+++ .++.+.+++ .+.++.++..++
T Consensus 136 ~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 136 WIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHH
Confidence 45677888899999999999999999999999999888888877765433321 112211221 123466788999
Q ss_pred HHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHH-HHhhhhhhhhH
Q psy9213 77 YSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTF-GAKILPMLTWL 155 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 155 (378)
..++|+|.|+|.+++++||+|||+|++|||++.++..+.++|++.........|++++..++.+.... .....++...+
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 295 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASA 295 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHH
Confidence 99999999999999999999999999999999999999999999988888888888765544444433 33334456778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI------DDVFALINYA 229 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~------~~~~~l~~~~ 229 (378)
+++.++++.+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.
T Consensus 296 ~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~ 374 (458)
T PRK10249 296 LNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALV 374 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 8899999999999988765433 2466799999
Q ss_pred HHHHHHHHHHHHHHHhhhhc--cCCCCCCCccchh--HHHHHHHHHHHHHHHhc
Q psy9213 230 TFVESSFTLTSVTGLLWLRL--KRPDLKRPIKVSI--ILPITFFIIAAFLVTLP 279 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~r~--~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~ 279 (378)
+....+.|.+++++++++|+ ++++.+||||.|. +.+.++++.+.++++..
T Consensus 375 ~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~~ 428 (458)
T PRK10249 375 VATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLM 428 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 3445568999887 45666666665555443
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=6.9e-36 Score=291.99 Aligned_cols=299 Identities=17% Similarity=0.159 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC-----CCCChhhHHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN-----SNWDPGYVALSFY 77 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 77 (378)
++.+++++++.+.+|++|+|..+++|++++.++++.++++++.++.... .+++..++.+ .+..+.++..++.
T Consensus 130 ~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 206 (473)
T TIGR00905 130 ILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFK---LDLFTADFWGHDVPSLGSVFSQVKNTML 206 (473)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---chhcccccCccCCCcccchHHHHHHHHH
Confidence 3456677778899999999999999999999999999888888776532 2222222211 1123556778888
Q ss_pred HHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhH-HHHHHHhhhhh-hhhH
Q psy9213 78 SGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTV-AVTFGAKILPM-LTWL 155 (378)
Q Consensus 78 ~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~ 155 (378)
..+|+|.|+|.+++++||+|| +|++||++..++.+++++|++...+..+..|++++.+++.+ .....++..+. ...+
T Consensus 207 ~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~ 285 (473)
T TIGR00905 207 VTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVL 285 (473)
T ss_pred HHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999998766555 55555555544 5577
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh-----hhhHHHHHHHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC-----IDDVFALINYAT 230 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~-----~~~~~~l~~~~~ 230 (378)
+.+..+++.+++.++.+.+.+|++|+|||||.+|++|+|+| |+++|++|++++++++.++.+ .++++.+.++.+
T Consensus 286 i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 364 (473)
T TIGR00905 286 ISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAV 364 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 569999999999988765443 246778999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheeec
Q psy9213 231 FVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKD 309 (378)
Q Consensus 231 ~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (378)
...++.|.+++++.+++|+|++..+++.+.+.+++.++.+.+.++... .++.....++.++.+|+.+|....+.++
T Consensus 365 ~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 365 VMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLYA---AGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998876211222333446777777777766553 3445667788888999888876554443
No 20
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2e-36 Score=311.74 Aligned_cols=305 Identities=15% Similarity=0.129 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------CCCCCCCCCC-CCChhhHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNT---------ENIAHPMQNS-NWDPGYVA 73 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~ 73 (378)
+++++++++++++|++|+|.++++|.+++++++++++.+++.++... .... +.+..++.+. .....++.
T Consensus 205 iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~ 283 (953)
T TIGR00930 205 IYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIPGPEGGFF 283 (953)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCCCcccHHH
Confidence 57788999999999999999999999999999999888877655321 1111 1111111111 11122366
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHH------------
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVA------------ 141 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~------------ 141 (378)
..+...+++|+|+|++++++||+|||+|++|||++.++.+++++|++.++.+....+.+...+.+...
T Consensus 284 ~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~ 363 (953)
T TIGR00930 284 SLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSE 363 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhh
Confidence 77777888999999999999999999999999999999999999999998777777665433211100
Q ss_pred -----------HHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHH
Q psy9213 142 -----------VTF-GAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLV 207 (378)
Q Consensus 142 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~ 207 (378)
..+ .......++.++.++++++.++++++++.+++|++++|||||.+| ++|+|+|+|+++|++|++
T Consensus 364 ~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~All 443 (953)
T TIGR00930 364 CAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYL 443 (953)
T ss_pred hcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHH
Confidence 001 111122256788899999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-ccchh-HHHHHHHHHHHHHHHhcCcccch
Q psy9213 208 FLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRP-IKVSI-ILPITFFIIAAFLVTLPMYVKPW 285 (378)
Q Consensus 208 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 285 (378)
++++++.++.++++++.++.+.+.+++++|+++++++++.|+++++..|| ||.+. ++++++++.|+++++. .
T Consensus 444 lt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~------i 517 (953)
T TIGR00930 444 LTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFL------I 517 (953)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHH------H
Confidence 99999999999999999999999999999999999999998777655676 56543 7899999999988876 3
Q ss_pred HHHHHHHHHHHHHHHHhhhheeecCCcchh
Q psy9213 286 EVGIGLLMILSGIPVYMVFVYWKDKPRWLN 315 (378)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (378)
.+...++.+++++++|++..+++.+.+|++
T Consensus 518 ~w~~ali~~~i~~~ly~~~~~~~~~~~wg~ 547 (953)
T TIGR00930 518 SWWAALVAMVIALFLYKYVTYKKPDVNWGS 547 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcch
Confidence 456667777777777877777777777774
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=5e-36 Score=291.76 Aligned_cols=300 Identities=19% Similarity=0.228 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCCC---CCChhhHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN----IAHPMQNS---NWDPGYVALS 75 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~ 75 (378)
++++.+++++.+.+|++|+|..+++|++++++|++.++.+++.++.....++++. +.+..+++ +.++.++..+
T Consensus 127 ~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a 206 (452)
T TIGR01773 127 WLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLA 206 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHH
Confidence 5677888888999999999999999999999999999888887765433222211 22111111 2234578899
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhc-chhHHHHHHHhh-hhhhh
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLS-SNTVAVTFGAKI-LPMLT 153 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~-~~~~~ 153 (378)
+..+.|+|.|+|.+++++||+|||+|++|||+..+...++++|++.........|+++... ++.+.....+.. .++..
T Consensus 207 ~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~ 286 (452)
T TIGR01773 207 ILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAK 286 (452)
T ss_pred HHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHH
Confidence 9999999999999999999999999999999999999999999998887777777665432 221333333333 34466
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----h-hHHHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----D-DVFALIN 227 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~-~~~~l~~ 227 (378)
.++++.++++.+++.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++++..+. + .++.+.+
T Consensus 287 ~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~ 365 (452)
T TIGR01773 287 LIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVN 365 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7888889999999999999999999999999999999999999 8899999999999988765443 2 2456888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCc--cchh--HHHHHHHHHHHHHHHhcC-ccc-chHHHHHHHHHHHHHHHH
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLKRPDLKRPI--KVSI--ILPITFFIIAAFLVTLPM-YVK-PWEVGIGLLMILSGIPVY 301 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~--~~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 301 (378)
..+...++.|.+++++.+++|+++++.+||| |.+. +.++.+++.+.++++... .++ .........+++.....|
T Consensus 366 ~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y 445 (452)
T TIGR01773 366 SSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSY 445 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999998877766654 4432 455555554444443331 222 244444555555555555
Q ss_pred hh
Q psy9213 302 MV 303 (378)
Q Consensus 302 ~~ 303 (378)
+.
T Consensus 446 ~~ 447 (452)
T TIGR01773 446 LV 447 (452)
T ss_pred HH
Confidence 43
No 22
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1e-35 Score=289.18 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCC-CCCCCCCCC---CCChhhHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMG--NTE-NIAHPMQNS---NWDPGYVALSF 76 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~~~~~ 76 (378)
+....+++++.+.+|++|+|..+++|.+++++|++.++++++.++.....+ ++. .+.+.++.+ +.++.++..++
T Consensus 127 ~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 206 (456)
T PRK10238 127 WVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMM 206 (456)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHH
Confidence 456777788899999999999999999999999999888877666543322 111 121111211 22345666778
Q ss_pred HHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHH-hhhhhhhhH
Q psy9213 77 YSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGA-KILPMLTWL 155 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 155 (378)
..+.|+|.|+|.+++++||+|||+|++|||+..++.++.++|+..........|++++..++.+...... ...++...+
T Consensus 207 ~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i 286 (456)
T PRK10238 207 AIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANA 286 (456)
T ss_pred HHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHH
Confidence 8899999999999999999999999999999999999999999988888888899887655444443333 333446678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI------DDVFALINYA 229 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~------~~~~~l~~~~ 229 (378)
+++.++++.+++.|+.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.+++
T Consensus 287 ~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~ 365 (456)
T PRK10238 287 LNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV 365 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999 7899999999999988775543 3467799999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCC--CCCccchh--HHHHHHHHHHHHHHHhc
Q psy9213 230 TFVESSFTLTSVTGLLWLRLKRPDL--KRPIKVSI--ILPITFFIIAAFLVTLP 279 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~r~~~~~~--~r~~~~~~--~~~~~~~~~~~~~~~~~ 279 (378)
+...+++|.++.++++++||++++. +++|+.|. +.+.++++.+.++++..
T Consensus 366 ~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (456)
T PRK10238 366 VSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIM 419 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886654 34566544 46666666655554443
No 23
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.6e-35 Score=288.24 Aligned_cols=300 Identities=17% Similarity=0.212 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCCCCCCCCCCC---CCChhhHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAM-----GNTENIAHPMQNS---NWDPGYVALS 75 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~ 75 (378)
.+.++++++...+|++|+|..+++|.+++.+|++.++++++.++..... +++.+..+.++++ +.++.++..+
T Consensus 125 ~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 204 (457)
T PRK10580 125 IWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMS 204 (457)
T ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHH
Confidence 4566677888999999999999999999999999988887776533211 1122222222221 2234577888
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHh-hhhhhhh
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAK-ILPMLTW 154 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~ 154 (378)
+..+.|+|.|+|.+++++||+|||+|++|||+..+.+++.++|++..+......|++++..++.+.....+. ..++...
T Consensus 205 ~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~ 284 (457)
T PRK10580 205 LQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAAS 284 (457)
T ss_pred HHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHH
Confidence 999999999999999999999999999999999999999999999988888888888876544443333322 2334557
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI------DDVFALINY 228 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~------~~~~~l~~~ 228 (378)
++.+.++.+.+++.|+.+++.+|++++|||||.+|++|+|+| |+|+|++|++++++++.+.... +.++.+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (457)
T PRK10580 285 ILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASL 363 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 778888889999999999999999999999999999999999 7899999999997765543221 235568999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCC---CCCCccchh--HHHHHHHHHHHHHHHhc-Ccc-cchHHHHHHHHHHHHHHHH
Q psy9213 229 ATFVESSFTLTSVTGLLWLRLKRPD---LKRPIKVSI--ILPITFFIIAAFLVTLP-MYV-KPWEVGIGLLMILSGIPVY 301 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r~~~~~---~~r~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 301 (378)
++....+.|.+.+++.+++|+++++ .++|||.|. +.+.++++.+++++... ..+ .+.....+..+++++.+.|
T Consensus 364 ~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y 443 (457)
T PRK10580 364 ATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGW 443 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987533 234788886 56677776666655443 112 2244566777777777777
Q ss_pred hhh
Q psy9213 302 MVF 304 (378)
Q Consensus 302 ~~~ 304 (378)
..+
T Consensus 444 ~~~ 446 (457)
T PRK10580 444 MFK 446 (457)
T ss_pred HHH
Confidence 653
No 24
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2.4e-35 Score=289.26 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCCCCC---CCCCCCCChhhHHHHHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKM-LALGGIVIAGMWFLAMGNTENIAH---PMQNSNWDPGYVALSFYSG 79 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i-~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 79 (378)
+..++++++.+++|++|+|..++++.+..+..+ +.++++++.++....++++.+... ++.+. .+..+....+...
T Consensus 125 i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~-~~~~~~~~~~~~~ 203 (507)
T TIGR00910 125 IAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPD-FSKVGTLVVFVAF 203 (507)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCC-cccccHHHHHHHH
Confidence 345567788899999999999999988665444 434555555555444443322111 11111 1111234455556
Q ss_pred hHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHH---Hhh---hhhhh
Q psy9213 80 LFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFG---AKI---LPMLT 153 (378)
Q Consensus 80 ~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~---~~~~~ 153 (378)
.|+|.|+|.+++++||+|||+|++|||+..+++++.++|.+..+......|++++..+++....+. ... .++..
T Consensus 204 ~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (507)
T TIGR00910 204 IGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLV 283 (507)
T ss_pred HHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHH
Confidence 899999999999999999999999999999999999999998888877788887654443333222 221 23455
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-------h--hHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------D--DVFA 224 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-------~--~~~~ 224 (378)
.++.+..+++.+++.++++.+.+|+++++||||.+|++|+|+| |+++|+++++++++++.++.+. . .++.
T Consensus 284 ~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~ 362 (507)
T TIGR00910 284 KVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLI 362 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 6777888889999999999999999999999999999999999 8999999999999887664321 1 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhcCcc
Q psy9213 225 LINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLVTLPMYV 282 (378)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~ 282 (378)
++++++..+++.|++..++.+++|+|+|+.+||||.|. .++.++++.+++.+++...+
T Consensus 363 l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~P 426 (507)
T TIGR00910 363 AIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLP 426 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeC
Confidence 67788899999999999999999999999999999874 35666666666666655443
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=4.4e-35 Score=283.34 Aligned_cols=293 Identities=15% Similarity=0.168 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC-CCCChhhHHHHHHHHhHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN-SNWDPGYVALSFYSGLFS 82 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (378)
+++.+++++.+.+|++|+|..++++.+..+++++.++.+++.++... +++++..++++ .+.++.++..++..++|+
T Consensus 123 ~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~fa 199 (435)
T PRK10435 123 IACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWF---DAATYAANWNTSDTTDGHAIIKSILLCLWA 199 (435)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHhhcccccCCCCchHHHHHHHHHHHHHH
Confidence 44567777889999999999999999999988887776666555432 22222222222 223467888999999999
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhh-hhhhhhHHHHHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI-LPMLTWLMPLFVS 161 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 161 (378)
|.|+|.+++++||+|||+|++|||+..+..+++++|++......+.+|++++..++.+.....++. .++...++++..+
T Consensus 200 f~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~ 279 (435)
T PRK10435 200 FVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTA 279 (435)
T ss_pred HhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876655544444444 4456778888889
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh------------hhhHHHHHHHH
Q psy9213 162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC------------IDDVFALINYA 229 (378)
Q Consensus 162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~------------~~~~~~l~~~~ 229 (378)
++++++.++.++..+|..++|||||.+|++|+|+| |+|+|++|++++++++.++.. .+.++.+.++.
T Consensus 280 i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (435)
T PRK10435 280 FACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIA 358 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999998876644321 12466799999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheeec
Q psy9213 230 TFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKD 309 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (378)
+...++.|++++++.+++|+ ++.+|++. .+.+.++.+.+.+.+.- ..+.....+++++.+.|+.+.+||+
T Consensus 359 ~~~~l~~y~~~~~~~ir~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 359 VLLTMLPYFYSCVDLIRFEG--VNIRNFVS--LICSVLGCVFCFIALMG------ASSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcC--CchhHHHH--HHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999886643 22222221 13444444444444431 2344455555666666666555444
Q ss_pred C
Q psy9213 310 K 310 (378)
Q Consensus 310 ~ 310 (378)
+
T Consensus 429 ~ 429 (435)
T PRK10435 429 E 429 (435)
T ss_pred c
Confidence 3
No 26
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.1e-34 Score=281.78 Aligned_cols=275 Identities=19% Similarity=0.214 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCCCCCC---CCCCCCChhhHHHHHHHHh
Q psy9213 5 LFILLESLLTAINCYNVKWVTRLQDVFTAT-KMLALGGIVIAGMWFLAMGNTENIAHP---MQNSNWDPGYVALSFYSGL 80 (378)
Q Consensus 5 ~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~-~i~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (378)
+.++++++.+.+|++|+|.++++|++.+.+ ++++++++++.++.....++..+.... +.++..++.++..+. ..+
T Consensus 126 ~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~ 204 (474)
T TIGR03813 126 SVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIF 204 (474)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHH
Confidence 455666778889999999999999987554 466666666666654333322211111 111111223333322 357
Q ss_pred HhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHH---HHh-hhhhhhhHH
Q psy9213 81 FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTF---GAK-ILPMLTWLM 156 (378)
Q Consensus 81 ~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~~~~~ 156 (378)
|+|.|+|.++..+||+|||+|++|||+..++.+++++|++..++.....|+++...+++....+ ... +.++...++
T Consensus 205 ~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 284 (474)
T TIGR03813 205 LFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPIL 284 (474)
T ss_pred HHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHH
Confidence 8999999999999999999999999999999999999999999999889988875443332222 122 223455667
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh----h----hhHHHHHHH
Q psy9213 157 PLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC----I----DDVFALINY 228 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~----~----~~~~~l~~~ 228 (378)
.+...++.+++.++.+.+.+|+++++||||.+|++|+|+| |+++|+++++++++++.++.+ . ..++.+.++
T Consensus 285 ~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~ 363 (474)
T TIGR03813 285 AFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQL 363 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 7778889999999999999999999999999999999999 899999999999887543221 1 135568899
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhcCc
Q psy9213 229 ATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLVTLPMY 281 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~ 281 (378)
.+...++.|.+.+++.+++|+|+++.+||||.|. ..+.++.+.+++.+++...
T Consensus 364 ~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~ 422 (474)
T TIGR03813 364 TVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFI 422 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEe
Confidence 9999999999999999999988888899999965 2555556655555554433
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.8e-34 Score=281.64 Aligned_cols=294 Identities=13% Similarity=0.095 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCCCCC-C--CCCChhhHHHHHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN-IAHPMQ-N--SNWDPGYVALSFYSG 79 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~ 79 (378)
..+.+++++++.+|++|+|..+++|++++++|+++++++++.++.....+...+ +..+.+ + .+..+.++..++...
T Consensus 125 ~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (468)
T TIGR03810 125 IGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVT 204 (468)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHH
Confidence 445667778899999999999999999999999999988887776543221111 110100 0 112244566788889
Q ss_pred hHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhH-HHHHHHhhh-hhhhhHHH
Q psy9213 80 LFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTV-AVTFGAKIL-PMLTWLMP 157 (378)
Q Consensus 80 ~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~ 157 (378)
+|+|.|+|.++.++||+|| +|++||++..++..+.++|++......+..|.+++.+.+.+ .....++.. ++...++.
T Consensus 205 ~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~ 283 (468)
T TIGR03810 205 VWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLIN 283 (468)
T ss_pred HHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHH
Confidence 9999999999999999998 79999999999999999999999999999999888654333 444444444 45668889
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHH
Q psy9213 158 LFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALINYATFV 232 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~~~~~l~~~~~~~ 232 (378)
++++++.+++.++++.+.+|++|+|||||.+|++|+|+| |+|+|+++++++.+++.++.+. ..++.+.++.+..
T Consensus 284 ~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~ 362 (468)
T TIGR03810 284 IGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSA 362 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8899999999998887655432 3567799999999
Q ss_pred HHHHHHHHHHHHhhhhccCC-CCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhh
Q psy9213 233 ESSFTLTSVTGLLWLRLKRP-DLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVF 304 (378)
Q Consensus 233 ~~~~~~~~~~~~~~~r~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (378)
.++.|.+++++.+++|+|++ +..|+++ ..++.++.+.++++++. ..+.....+....++|+.+|+..
T Consensus 363 ~li~y~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~ 430 (468)
T TIGR03810 363 ILVPYLWSAAYQVKLSWRGGQERGRRKQ--LLIGLVALLYAVWLIYA---AGLKYLLLSAILYAPGIYFYARA 430 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhh--HHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987763 2233443 35666666666666653 44456667778888888888653
No 28
>KOG1286|consensus
Probab=100.00 E-value=8e-35 Score=282.51 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCC--CCCC----CCCChhhHHHHH
Q psy9213 6 FILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTE---NIAH--PMQN----SNWDPGYVALSF 76 (378)
Q Consensus 6 ~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---~~~~--~~~~----~~~~~~~~~~~~ 76 (378)
-..++++...+|+.|++.++..+....+.|++.++.+++.+++...++.+. ++.. .+.+ .+.++.|+..++
T Consensus 159 ~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~ 238 (554)
T KOG1286|consen 159 IPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGA 238 (554)
T ss_pred HHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHH
Confidence 456788899999999999999999999999999999999999877665443 3331 1111 223478999999
Q ss_pred HHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhh--hhcchhHHHH----HHHhhhh
Q psy9213 77 YSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEE--LLSSNTVAVT----FGAKILP 150 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--l~~~~~~~~~----~~~~~~~ 150 (378)
..++|+|+|+|.++..+||+|||||++|+|++.++.++.++|++..+.++..+|+++ +..+.+...+ ......+
T Consensus 239 ~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k 318 (554)
T KOG1286|consen 239 ATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAK 318 (554)
T ss_pred HHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCcc
Confidence 999999999999999999999999999999999999999999999999999999988 6555433333 3333344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhh------HHH
Q psy9213 151 MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDD------VFA 224 (378)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~------~~~ 224 (378)
..+++++++++++..+++|+++++.||.+++||+||++|++|+++|+| |+|+.|+++..+++.+..+..+ +++
T Consensus 319 ~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~ 397 (554)
T KOG1286|consen 319 YLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNW 397 (554)
T ss_pred ccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHH
Confidence 456799999999999999999999999999999999999999999955 9999999999999988776543 488
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCC-----CCCCCccchh--HHHHHHHHHHHHHHH
Q psy9213 225 LINYATFVESSFTLTSVTGLLWLRLKRP-----DLKRPIKVSI--ILPITFFIIAAFLVT 277 (378)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~r~~~~~~--~~~~~~~~~~~~~~~ 277 (378)
++++.+++.++.|..++++++++|+..+ ..+.||+.+. +.+..+...+.....
T Consensus 398 L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~ 457 (554)
T KOG1286|consen 398 LVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILL 457 (554)
T ss_pred HHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999998642 2234677753 445555555444443
No 29
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=2e-33 Score=270.16 Aligned_cols=260 Identities=17% Similarity=0.208 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFS 82 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (378)
+.++.+++++.+.+|++|+|.++++|.+++++.+..+..+ ......+++++..+ +..+.++.++..++..++|+
T Consensus 116 ~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a 189 (410)
T PRK11021 116 LLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI-----WWAGDIKPADIPFP-APGSIEWSGLFAALGVMFWC 189 (410)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCchhcCCCC-CCCCccHHHHHHHHHHHHHH
Confidence 4566778888999999999999999998876544332221 11111223333111 11233567788899999999
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVS 161 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 161 (378)
|.|+|.+++++||+|||+|++|||+..+...++++|++.+.......++++...++.+.....++.+| +...++.+..+
T Consensus 190 f~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~ 269 (410)
T PRK11021 190 FVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGY 269 (410)
T ss_pred HhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877666655543333333333344444 34466777888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHH
Q psy9213 162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALINYATFVESSF 236 (378)
Q Consensus 162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~~~~~l~~~~~~~~~~~ 236 (378)
++.+++.++.+.+.+|++++|||||.+|++|+|+| |+++|+++++++.+++.+..+. .+++.+.+..+...++.
T Consensus 270 ~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~ 348 (410)
T PRK11021 270 LACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLI 348 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 7899999999998877664432 46788999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHh
Q psy9213 237 TLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTL 278 (378)
Q Consensus 237 ~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 278 (378)
|.+.+++.++++++++ .++++++.+.|.+++..
T Consensus 349 y~~~~~a~~~l~~~~~---------~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 349 YLLCMLAACKLLKGRY---------RPLAVLGCLLCLLLLVM 381 (410)
T ss_pred HHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHH
Confidence 9999999999876541 25788888888877654
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.7e-33 Score=276.15 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCC-CCCCCC--CCC--hhhHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMG-NTENIA-HPMQNS--NWD--PGYVALSF 76 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-~~~~~~-~~~~~~--~~~--~~~~~~~~ 76 (378)
.+++.+++++.+++|++|+|..++++++..+++++.++++++..+.....+ ++.++. .++.+. ++. ..++..++
T Consensus 144 ~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 223 (482)
T TIGR00907 144 FGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGL 223 (482)
T ss_pred hhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhh
Confidence 345566778899999999999999999999999888776555443321111 111111 112211 111 12456777
Q ss_pred HHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcC-Chhhhhcch--hHHHHHHHhhhh--h
Q psy9213 77 YSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVL-SKEELLSSN--TVAVTFGAKILP--M 151 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~l~~~~--~~~~~~~~~~~~--~ 151 (378)
..+.|+|.|+|.+++++||+|||+|++|||+..++.+..+++++..+...... +.++..+++ .+.........| +
T Consensus 224 ~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 303 (482)
T TIGR00907 224 LNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKA 303 (482)
T ss_pred hhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCch
Confidence 77889999999999999999999999999999999877665444333332222 445443332 244333333332 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hhHHH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFA 224 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~~~~~ 224 (378)
...++.+.++++.+++.++.+.+.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+. ..++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~ 383 (482)
T TIGR00907 304 GAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQA 383 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45667788889999999999999999999999999999 999999988899999999999988765443 35777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh---HHHHHHHHHHHHHHH
Q psy9213 225 LINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI---ILPITFFIIAAFLVT 277 (378)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~ 277 (378)
+.++.+...++.|.++.++.++.||+ ++.+||||.+. +.+.++++.+.+..+
T Consensus 384 l~~~~~~~~~i~y~~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v 438 (482)
T TIGR00907 384 IFSVCTVALDVSYVIPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSV 438 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999888765544 46678999854 344444444444433
No 31
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.1e-32 Score=267.53 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCCCCC-CCChhhHHHHHHHHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTE-NIAHPMQNS-NWDPGYVALSFYSGL 80 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (378)
++++.+++++.+.+|++|+|..+++|++..+++++.++++++.++.... .+++ .+.+...+. +.....+..+.....
T Consensus 145 ~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 223 (475)
T TIGR03428 145 VLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ-RGPGVVFDTSVTGASPGYYGAFLVSGLMAA 223 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcceeeecCCCCCCccHHHHHHHHHHHHH
Confidence 4667778888999999999999999999999999887777665544321 1111 111111111 112345667888889
Q ss_pred HhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCCh-hh--hhcchhHHHHHHHhhhhhhhhHHH
Q psy9213 81 FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK-EE--LLSSNTVAVTFGAKILPMLTWLMP 157 (378)
Q Consensus 81 ~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~-~~--l~~~~~~~~~~~~~~~~~~~~~~~ 157 (378)
|+|.|+|.+++++||+|||+|++|||+..++.++.++|.+..+......+. ++ ...++.+. .+.+...+..+..+.
T Consensus 224 ~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g~~~~~~~~ 302 (475)
T TIGR03428 224 YVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPY-VLSAVLDSPWGTVLL 302 (475)
T ss_pred HHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHH-HHHHHhCcHhHHHHH
Confidence 999999999999999999999999999999999888777776666555443 22 11222222 222222222344555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHH
Q psy9213 158 LFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALINYAT 230 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~~~~~l~~~~~ 230 (378)
..++++.+++.++.+.+.||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.+. ..++.+.++.+
T Consensus 303 ~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~ 382 (475)
T TIGR03428 303 VDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCI 382 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66778999999999999999999999999999 489999999999999999999988776553 24667999999
Q ss_pred HHHHHHHHHHHHHHhhhhccC------CCCCCCccchh------HHHHHHHHHHHHHHHhcC
Q psy9213 231 FVESSFTLTSVTGLLWLRLKR------PDLKRPIKVSI------ILPITFFIIAAFLVTLPM 280 (378)
Q Consensus 231 ~~~~~~~~~~~~~~~~~r~~~------~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~ 280 (378)
+..+++|.+..+..+..|++. +.+++||++++ +++++..+...+.+++|.
T Consensus 383 ~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P~ 444 (475)
T TIGR03428 383 VLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWPR 444 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999888877666442 12456898886 234444444555555553
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-32 Score=265.03 Aligned_cols=260 Identities=28% Similarity=0.400 Sum_probs=219.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhH
Q psy9213 2 EYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLF 81 (378)
Q Consensus 2 ~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (378)
+++++.+++++.+++|++|+|.+++++.+.++++++.++.+.+.++......+ .+...++.+.++...++..++...+|
T Consensus 134 ~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (466)
T COG0531 134 IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GNLFAPFNPGGGSFGGILAAILLAFF 212 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cccCCCcccccchHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999998887754433 22222223233445578889999999
Q ss_pred hccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc-h-hHHHHHHHhhhh-hhhhHHHH
Q psy9213 82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS-N-TVAVTFGAKILP-MLTWLMPL 158 (378)
Q Consensus 82 ~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~-~~~~~~~~ 158 (378)
+|.|+|.+++++||+|||+|++||++..+...+.++|++.........+.+++..+ + .+.........+ +...++.+
T Consensus 213 ~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~ 292 (466)
T COG0531 213 AFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAI 292 (466)
T ss_pred HhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765543 1 233344444444 67788899
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHH-HHhhh----hHHHHHHHHHHHH
Q psy9213 159 FVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLL-LMCID----DVFALINYATFVE 233 (378)
Q Consensus 159 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i-~~~~~----~~~~l~~~~~~~~ 233 (378)
..+++.+++.++...+.+|.+++|||||.+|++|+|+|+|+++|++++++..+++.+ ..... .++.+.++.+...
T Consensus 293 ~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~ 372 (466)
T COG0531 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAF 372 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999983 33322 3577999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCccchh
Q psy9213 234 SSFTLTSVTGLLWLRLKRPDLKRPIKVSI 262 (378)
Q Consensus 234 ~~~~~~~~~~~~~~r~~~~~~~r~~~~~~ 262 (378)
.+.|.+..++.+.+|+++++.+||+|.+.
T Consensus 373 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG0531 373 LIAYLLVALALLVLRRKKPDLKRPFRLPL 401 (466)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccccc
Confidence 99999999999999999887788877766
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=7.2e-35 Score=285.55 Aligned_cols=258 Identities=23% Similarity=0.324 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCC---C------CCCC-----CCCCCh
Q psy9213 5 LFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAG-MWFLAMGNTENI---A------HPMQ-----NSNWDP 69 (378)
Q Consensus 5 ~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~-~~~~~~~~~~~~---~------~~~~-----~~~~~~ 69 (378)
++.+++++.+.+|++|+|.++++|.++..++++.++.+++.+ +.....+++.+. . +.+. +.+.++
T Consensus 120 ~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (478)
T PF00324_consen 120 IAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGF 199 (478)
T ss_pred hhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccch
Confidence 477888999999999999999999999999999999999988 333333332222 1 1111 123457
Q ss_pred hhHHHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcch-----hHHH-H
Q psy9213 70 GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSN-----TVAV-T 143 (378)
Q Consensus 70 ~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~-----~~~~-~ 143 (378)
.+++.++..++++|.|+|+++.++||+|||||++|||+..++++++++|++..++....+|+++....+ ++.. .
T Consensus 200 ~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 279 (478)
T PF00324_consen 200 SGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIA 279 (478)
T ss_pred hHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhh
Confidence 889999999999999999999999999999999999999999999999999999999999988754322 2333 3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh---
Q psy9213 144 FGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID--- 220 (378)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~--- 220 (378)
......++...+++++.+.+.+++.++++++.||++++|||||.+|+++.+.|+|+|+|++|++++.+++++..+..
T Consensus 280 ~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~ 359 (478)
T PF00324_consen 280 AQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFS 359 (478)
T ss_pred hhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccch
Confidence 33444556788999999999999999999999999999999999996666667799999999999999988766532
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC-----CCccchh
Q psy9213 221 ---DVFALINYATFVESSFTLTSVTGLLWLRLKRPDLK-----RPIKVSI 262 (378)
Q Consensus 221 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----r~~~~~~ 262 (378)
.++.+.+..++..++.|.+.+++.+++|++.+..+ .|++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~ 409 (478)
T PF00324_consen 360 PGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSPF 409 (478)
T ss_pred hhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhhh
Confidence 24457888899999999999999999888743322 2676665
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.9e-31 Score=262.01 Aligned_cols=271 Identities=18% Similarity=0.254 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhccC-CC-CCCC-CCC----CCCCCChhhHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAG-MWFLAMG-NT-ENIA-HPM----QNSNWDPGYVALS 75 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~-~~~~~~~-~~-~~~~-~~~----~~~~~~~~~~~~~ 75 (378)
+++++.+++.+.+|++|+|.+++++++.++.++...+++++.+ +.....+ +. +++. .++ ++...+..++..+
T Consensus 137 ~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (496)
T PRK15238 137 ILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSF 216 (496)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHH
Confidence 3455566688999999999999999998888765543333222 2222111 11 1111 111 1111112457778
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchh------HHH---HHHH
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNT------VAV---TFGA 146 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~------~~~---~~~~ 146 (378)
+..+.|+|.|+|.+++++||+|||+|++|||++.+..+++++|++..+......|+++...++. +.. ....
T Consensus 217 ~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 296 (496)
T PRK15238 217 VVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGY 296 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999888888888777643211 100 0000
Q ss_pred -------------hhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHH
Q psy9213 147 -------------KIL-PMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCII 212 (378)
Q Consensus 147 -------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~ 212 (378)
..+ ++...++++..+++.+++.++..++.+|.++.++|||.+|++|+|+| |+|+|++|+++++++
T Consensus 297 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i 375 (496)
T PRK15238 297 TLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCII 375 (496)
T ss_pred HHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHH
Confidence 001 12334667888899999999999999999999999999999999999 999999999999987
Q ss_pred HHHHHhh---h-----h-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHH
Q psy9213 213 TLLLMCI---D-----D-VFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLV 276 (378)
Q Consensus 213 ~~i~~~~---~-----~-~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~ 276 (378)
+.+..+. + + ++.+.++.+...++.|++++++++++|| +++.+|||+.+. +.+.++++.+++..
T Consensus 376 ~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (496)
T PRK15238 376 VSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVLVVGFAN 453 (496)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHHHHHHHH
Confidence 7755322 1 1 5669999999999999999999999876 567778776532 34444444444443
No 35
>KOG1289|consensus
Probab=100.00 E-value=9.5e-32 Score=252.06 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCC-CCCCCC-CCCC--hhhHHH
Q psy9213 2 EYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGN---TENI-AHPMQN-SNWD--PGYVAL 74 (378)
Q Consensus 2 ~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~-~~~~~~-~~~~--~~~~~~ 74 (378)
++++..++.++..++|+.+.|...+++.+...+.++.+++.+|.........+ ...+ ..++++ ++|+ ...|..
T Consensus 177 ~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil 256 (550)
T KOG1289|consen 177 QFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFIL 256 (550)
T ss_pred eehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHH
Confidence 56788899999999999999999999999999999999988887665432221 1111 112333 3333 234567
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCC--hhhhhcc--hhHHHHHHHhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLS--KEELLSS--NTVAVTFGAKILP 150 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~--~~~l~~~--~~~~~~~~~~~~~ 150 (378)
++....|.++|+|+.++++||+|||+|+.||||+.++.+..++-.+..+.+....+ .|.+.++ +.+...+..+..|
T Consensus 257 ~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg 336 (550)
T KOG1289|consen 257 GFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALG 336 (550)
T ss_pred hhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcC
Confidence 88889999999999999999999999999999999999988877777667666665 3334443 3566666666666
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hhH
Q psy9213 151 M-LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDV 222 (378)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-----~~~ 222 (378)
. ....+...++++.+.++.+++.+.||..|+.||||.+| ++++|+||++++|.+|+++..+++.++.+. .++
T Consensus 337 ~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af 416 (550)
T KOG1289|consen 337 KKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAF 416 (550)
T ss_pred CCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4 44677888899999999999999999999999999999 899999988899999999999998876543 368
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhcCcccchHH
Q psy9213 223 FALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLVTLPMYVKPWEV 287 (378)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (378)
+.+.+++.+..+++|.++.+..+.++|+ .-++.||..+. ++++.+.++++.++++|...++...
T Consensus 417 ~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~ 486 (550)
T KOG1289|consen 417 NALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTAD 486 (550)
T ss_pred HHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 8899999999999999999888877666 33344555444 5678888888999999888776433
No 36
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=9e-31 Score=253.41 Aligned_cols=273 Identities=27% Similarity=0.434 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCC---CCCCCCCCCCChhhHHHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKM-LALGGIVIAGMWFLAMGNTEN---IAHPMQNSNWDPGYVALSFYS 78 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i-~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (378)
.+++++++++.+.+|++|.|..++++++.+++++ ..++++++.++.....+.... ..+++.++. ..++..++..
T Consensus 119 ~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 196 (426)
T PF13520_consen 119 FLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSG--WPGFLAGFSV 196 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSS--SSHHHHHHHH
T ss_pred eeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCcc--ccchhhHHHH
Confidence 4678889999999999999999999999999999 677777777776543221110 011222222 2347888999
Q ss_pred HhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchh---HHHHHHHhhh-hhhhh
Q psy9213 79 GLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNT---VAVTFGAKIL-PMLTW 154 (378)
Q Consensus 79 ~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~-~~~~~ 154 (378)
++|+|.|+|++++++||.|| |++|||+..+.+.+.++|++..++.....|+++...+++ +...+.+... ++...
T Consensus 197 ~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T PF13520_consen 197 AFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAI 274 (426)
T ss_dssp HGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHH
T ss_pred HHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccc
Confidence 99999999999999999776 899999999999999999999999999999988765433 3445555554 56778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh-h-----hhHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC-I-----DDVFALINY 228 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~-~-----~~~~~l~~~ 228 (378)
++.+...++.+++.++.+.+.+|++++|||||.+|++|+|+| |+|+|++++++.++++.++.+ . ++++.+.+.
T Consensus 275 ~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~ 353 (426)
T PF13520_consen 275 IVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL 353 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH
T ss_pred ccccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 999999999999999966542 2 367789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCC-CccchhHHHHHHHHHHHHHHHhcCcc
Q psy9213 229 ATFVESSFTLTSVTGLLWLRLKRPDLKR-PIKVSIILPITFFIIAAFLVTLPMYV 282 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (378)
.++...+.|.+..++.+++|+|+++.+| |++. ..++++.+.+++.......+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~i~~~~~~~~~~~~~~~~ 406 (426)
T PF13520_consen 354 SSVGYLISYILVILAVLFLRRKRPDLKRIPYRP--PVGIIGIIIILFVIIASFFP 406 (426)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHHH--HHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcch--HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888766 5443 35566666666666555443
No 37
>KOG2082|consensus
Probab=99.93 E-value=6e-25 Score=209.66 Aligned_cols=252 Identities=16% Similarity=0.089 Sum_probs=206.2
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCC----hhhhhcchhHHHHHHHhhhhh
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLS----KEELLSSNTVAVTFGAKILPM 151 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~ 151 (378)
+.+-+-+.+|+-+.++.+++.|||+|+||.+++.+.+....+|+...+.+.+... +|...++ ....+.-..+.|
T Consensus 416 vgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~s--v~g~lVva~laW 493 (1075)
T KOG2082|consen 416 VGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQS--VGGNLVVATLAW 493 (1075)
T ss_pred HHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhh--ccCcEEEEEecC
Confidence 3444668999999999999999999999999999999999999999888777666 3333221 110111111223
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9213 152 -LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINY 228 (378)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~ 228 (378)
-+|++.++.++|.+++++.++.+++|+|.+.|||+.+| +.|++.. ++|.|.+|++++.+++-..+++++++.++.+
T Consensus 494 PsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApi 572 (1075)
T KOG2082|consen 494 PSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPI 572 (1075)
T ss_pred CCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHH
Confidence 35888999999999999999999999999999999999 8999988 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCC-ccchhH-HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhhe
Q psy9213 229 ATFVESSFTLTSVTGLLWLRLKRPDLKRP-IKVSII-LPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVY 306 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r~~~~~~~r~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (378)
.+++++++|.+.++++.....-+...+|| ||...| ++.+|+.+|+++++. .++.++++.+.+..++|-...+
T Consensus 573 lsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~------~SWyyAlvAm~~a~~IYKYiEy 646 (1075)
T KOG2082|consen 573 LSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFI------SSWYYALVAMLIAGVIYKYIEY 646 (1075)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988776655566777 888776 899999999999988 6777888888888888877777
Q ss_pred eecCCcchh-----------hhhhhhhcccCCCccchhhhh
Q psy9213 307 WKDKPRWLN-----------NIAVFIGSRMVGTTTRNMQQA 336 (378)
Q Consensus 307 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 336 (378)
+.+++.|++ +...+++..+++.++++.|.+
T Consensus 647 kGAeKEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlL 687 (1075)
T KOG2082|consen 647 KGAEKEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLL 687 (1075)
T ss_pred ccccchhccchhhHHHHHHHHHHHhcccCCCCCCCCCceee
Confidence 777778876 333344666777666666553
No 38
>KOG1288|consensus
Probab=99.93 E-value=2.3e-25 Score=210.97 Aligned_cols=273 Identities=13% Similarity=0.064 Sum_probs=221.3
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCCCC----CCCC-----
Q psy9213 1 MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNT-------ENIAH----PMQN----- 64 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-------~~~~~----~~~~----- 64 (378)
|.++.+..++.++..+++.|...++|..+++.+...+.+....+..++.-+...+ ..... ++.+
T Consensus 196 w~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sT 275 (945)
T KOG1288|consen 196 WRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWST 275 (945)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHH
Confidence 5677888899999999999999999999988877777766665543332111111 00000 0110
Q ss_pred -------------CCCChhhHHHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCCh
Q psy9213 65 -------------SNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK 131 (378)
Q Consensus 65 -------------~~~~~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~ 131 (378)
.+....+|...+...+-+.+|.-+.++|++|.|+|+|+|||+++.++....++|++..+...+..|+
T Consensus 276 l~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r 355 (945)
T KOG1288|consen 276 LMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPR 355 (945)
T ss_pred HhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcch
Confidence 1122335667777778889999999999999999999999999999999999999999999999998
Q ss_pred hhhhcchhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHH
Q psy9213 132 EELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFL 209 (378)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~ 209 (378)
..+.++-... +.....++++.++++.+.+.+..+.+.++||+|.++|||+.+| -.|+|...+.+.|+.|+.++
T Consensus 356 ~~Lq~dy~v~-----~~isl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vt 430 (945)
T KOG1288|consen 356 TLLQNDYDVM-----MHISLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVT 430 (945)
T ss_pred HHhhhchhhe-----eeccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHH
Confidence 8876654432 2233366788899999999999999999999999999999999 57788877999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-ccchhH-HHHHHHHHHHHHHHh
Q psy9213 210 CIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRP-IKVSII-LPITFFIIAAFLVTL 278 (378)
Q Consensus 210 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~-~~~~~~-~~~~~~~~~~~~~~~ 278 (378)
..+.-+.++.++++.++++.++.++++|...+++++.++.......|| ||...| ...+|.+.+..+++.
T Consensus 431 w~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfv 501 (945)
T KOG1288|consen 431 WLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFV 501 (945)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhhe
Confidence 999999999999999999999999999999999999999888777887 887776 667788877777665
No 39
>KOG2083|consensus
Probab=99.78 E-value=5.7e-18 Score=159.87 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CCCCCCCCCCCCCChhhHHHHHH
Q psy9213 5 LFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGN-------TENIAHPMQNSNWDPGYVALSFY 77 (378)
Q Consensus 5 ~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 77 (378)
++.+..+++..+|.-|+++..|+|.++..+..+++.-+.+..++-...-+ .+.+..++.+.-.+-..|+..+.
T Consensus 151 i~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~ 230 (643)
T KOG2083|consen 151 IGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFA 230 (643)
T ss_pred hhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeee
Confidence 56778889999999999999999999999999999888887665432110 11111111111111135667777
Q ss_pred HHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc-----h--hHHHHHH---Hh
Q psy9213 78 SGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS-----N--TVAVTFG---AK 147 (378)
Q Consensus 78 ~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~-----~--~~~~~~~---~~ 147 (378)
..+-+.+|.-+.++++++.|+|++++|++...++.....+|+....-.......+..... + +....-. ..
T Consensus 231 vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~s 310 (643)
T KOG2083|consen 231 VFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMS 310 (643)
T ss_pred eecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHH
Confidence 778899999999999999999999999999999999999999876555544444433211 1 1111111 12
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCh--hHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHH
Q psy9213 148 ILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP--KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFAL 225 (378)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l 225 (378)
........+..++..+..++..+++.+++++++++.+|+..| .++.|-.+|++.|.++..++...+..+...++.+.+
T Consensus 311 mvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~i 390 (643)
T KOG2083|consen 311 MVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNII 390 (643)
T ss_pred hHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEeccccee
Confidence 223355677888999999999999999999999999999999 788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-ccchh-HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhh
Q psy9213 226 INYATFVESSFTLTSVTGLLWLRLKRPDLKRP-IKVSI-ILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMV 303 (378)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (378)
..+.+.++..+|..++.+++.-+...++.+|| ++.+. |.+..+.+.|..+++. ..++..++.+.....+|+.
T Consensus 391 apiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFl------i~w~aaLi~~~~~~~Ly~y 464 (643)
T KOG2083|consen 391 APIISNFFLLSYALINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFL------ISWWAALITFSVLSALYLY 464 (643)
T ss_pred ccchhhhhhhhhhccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988888888886 66665 8999999999888876 5666677666666666654
Q ss_pred hhee
Q psy9213 304 FVYW 307 (378)
Q Consensus 304 ~~~~ 307 (378)
..++
T Consensus 465 v~~~ 468 (643)
T KOG2083|consen 465 VGRR 468 (643)
T ss_pred hhhc
Confidence 3333
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.71 E-value=3.8e-15 Score=142.10 Aligned_cols=242 Identities=13% Similarity=0.121 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhc
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSY 83 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
..++++.+++..+|++|.|..+++|.+++..++..++.+++.++... +.+++.+. .+.+..+.++..++...+++|
T Consensus 116 ~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~---~~~~~~~~-~~~~~~~~~~~~a~~~~~~~f 191 (381)
T TIGR00837 116 AIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV---KGDLLLDV-ALDTSYWPYILSALPVCLTSF 191 (381)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHHhcC-ccccccHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999998888877766543 23333322 111223456677777778888
Q ss_pred cChh-hHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc------hhHHHHHHHhhh--hhhhh
Q psy9213 84 SGWN-YLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS------NTVAVTFGAKIL--PMLTW 154 (378)
Q Consensus 84 ~G~e-~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~--~~~~~ 154 (378)
|+| ..+...+|.|||+|++||++..+..++.++|++......+..|++++.+. .++......... ++...
T Consensus 192 -g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (381)
T TIGR00837 192 -GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIEL 270 (381)
T ss_pred -HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHH
Confidence 565 68888999987899999999999999999999999999999999987532 122222222222 23556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh--hH-HHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID--DV-FALINYATF 231 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~--~~-~~l~~~~~~ 231 (378)
++.+...++..++.++...+.+ |+ +++.+++.++|++ |..+.+++.+..+++.... .+ ..+......
T Consensus 271 ~v~~~~~~al~tS~~g~~l~~~--------d~-l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~ 340 (381)
T TIGR00837 271 ALELFSNFALASSFLGVTLGLF--------DY-LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLA 340 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 7778888888888888777666 44 5666776554444 6777777777766655432 22 234443433
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccchh
Q psy9213 232 VESSFTLTSVTGLLWLRLKRPDLKRPIKVSI 262 (378)
Q Consensus 232 ~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~ 262 (378)
...+...++.+-..+.|||+++ +|||.|.
T Consensus 341 ~~~~~~~~p~l~~~~~r~~~~~--~~~~~~~ 369 (381)
T TIGR00837 341 ATIWAVIIPALLAWKARKKFPN--AGYRVWG 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--CCccccC
Confidence 3334444444444444554433 5899887
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.69 E-value=3e-14 Score=133.35 Aligned_cols=243 Identities=12% Similarity=0.192 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhc
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSY 83 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
+.++++..+...+|+++.|...+++++++-.+++.++.+++.++... .++..+-..++.+ ...+..++....+++
T Consensus 113 i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p-~g~~~~~~~~~~~----~~~f~~g~l~GY~Tm 187 (378)
T TIGR00796 113 IFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWP-AGPILAASGAYAS----QQAFSKGFLEGYLTM 187 (378)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcC-CCCcCCccccccc----ccHHHHHHHHHHHHH
Confidence 35566666777799999999999999999999999999999998763 2221111111111 034778888888888
Q ss_pred c-------ChhhHHhhhh-hhhCccccchhHHHhHH-HHHHHHHHHHHHHHHhcCChhhhhc---chhHHHHHHHhhhhh
Q psy9213 84 S-------GWNYLNFVTE-ELKNPYKNLPKAICVSM-PLSTIVYLLVNVAYFVVLSKEELLS---SNTVAVTFGAKILPM 151 (378)
Q Consensus 84 ~-------G~e~~~~~a~-E~knP~k~ip~ai~~~~-~~~~~~y~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~ 151 (378)
. |+-.+..+.+ |.|||+|..|+.++.++ ..+...|+...+++.+..+.+++.+ .........++.+|.
T Consensus 188 D~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~ 267 (378)
T TIGR00796 188 DALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGS 267 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcch
Confidence 8 8888888888 99999999999999999 6677788888888888887665543 456667778888887
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9213 152 L-TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYAT 230 (378)
Q Consensus 152 ~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~ 230 (378)
. ..++.+.+.++++++.++-+.+.+ +.|+|.++| +|+.+.++...+...++....++.++++..
T Consensus 268 ~G~~ll~i~v~lACLtT~iGli~~~a-------------~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~ 332 (378)
T TIGR00796 268 LGSFLLGLIITLACLTTAVGLTTACS-------------EYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISI 332 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5 578889999999999999888844 457777654 999999999988888887788999999988
Q ss_pred HHHHHHHHHHHHHHhh--hhccCCCCCCCccchhHHHH
Q psy9213 231 FVESSFTLTSVTGLLW--LRLKRPDLKRPIKVSIILPI 266 (378)
Q Consensus 231 ~~~~~~~~~~~~~~~~--~r~~~~~~~r~~~~~~~~~~ 266 (378)
-..++.|-+.....+. +|++.++.+||||.+.+.+.
T Consensus 333 PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~ 370 (378)
T TIGR00796 333 PVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLIVAL 370 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHH
Confidence 8888888877777666 78888888899998775443
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.10 E-value=5.3e-08 Score=92.18 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHH-HHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLAL-GGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFY-SGL 80 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (378)
+.++..+++++...+..|.+..+|.+.++..+.+... +++.. ......+.+++.+-+++ +..+...+.. ...
T Consensus 116 ~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~---~~~~~~~~~~l~P~~~~---g~~~~~~~~~~~~~ 189 (359)
T TIGR00912 116 IVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLIL---LAPKLGNIKNLLPVLEN---GLSPILKGAYPVVT 189 (359)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccccHHHccCcccc---CcHHHHhhhhHHhh
Confidence 4566777788888999999999999999998887663 32222 11222345555443332 2345565555 788
Q ss_pred HhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhh-hh-h---hhhH
Q psy9213 81 FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI-LP-M---LTWL 155 (378)
Q Consensus 81 ~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~---~~~~ 155 (378)
++|.|+|......+|.|||| +.||++..+...++++|++......+..++++..+...|.....+.. .+ - ...+
T Consensus 190 ~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~ 268 (359)
T TIGR00912 190 FAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELI 268 (359)
T ss_pred hhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHH
Confidence 99999999999999999975 58999999999999999999999999999998877655544433222 22 1 2334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFF 180 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~ 180 (378)
+...-..+.+.....+++..++.+-
T Consensus 269 ~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 269 VMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777653
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.93 E-value=1.4e-06 Score=83.07 Aligned_cols=243 Identities=16% Similarity=0.180 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhc
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSY 83 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
.....+.++...+-+.|.|...|++.++...+++.++.+.+.++... +.++... .++...++...+.++...+++|
T Consensus 122 ~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~---~~~~L~~-~~~~~~~~~~~~~~lPv~~~Sf 197 (394)
T PF03222_consen 122 LSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYLIPHW---NPSNLLD-APPSPSDWSYILPALPVLVFSF 197 (394)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CHHHhhc-cccccccHHHHHHHHHHHHHHH
Confidence 44556677777788899999999999999999999888887766543 3333332 2333456777888899999999
Q ss_pred cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhc---ch----hHHHHHHHhhh-hhhhhH
Q psy9213 84 SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLS---SN----TVAVTFGAKIL-PMLTWL 155 (378)
Q Consensus 84 ~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~---~~----~~~~~~~~~~~-~~~~~~ 155 (378)
.-...++.+....++-+|.+.|++..+..+..++|++-..+..+..|.++..+ .+ +......+... ++...+
T Consensus 198 ~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~ 277 (394)
T PF03222_consen 198 GFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISIL 277 (394)
T ss_pred HHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHH
Confidence 98999999999998777889999999999999999999888888888887532 12 11222222222 234455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLM--CIDDVFALINYATFVE 233 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~--~~~~~~~l~~~~~~~~ 233 (378)
..+..+++..+|..+...+....+. | .+++.+.+.+. .....++.+...++. ..+.+....+.++.+.
T Consensus 278 ~~~fa~~Ai~TSFlGv~lgl~d~l~----d-----~~k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~ 347 (394)
T PF03222_consen 278 GSIFAFFAIATSFLGVYLGLFDFLA----D-----LFKLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGI 347 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHcCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHH
Confidence 5555666666666665555555442 2 23321111111 222233333333332 2345556666666544
Q ss_pred HH-HHHHHHHHHhhhhccCCCCCCCccchh
Q psy9213 234 SS-FTLTSVTGLLWLRLKRPDLKRPIKVSI 262 (378)
Q Consensus 234 ~~-~~~~~~~~~~~~r~~~~~~~r~~~~~~ 262 (378)
.+ ..+++.+...+.|+++ .+++|+.+.
T Consensus 348 ~il~~ilP~~m~~~~r~~~--~~~~~~~~g 375 (394)
T PF03222_consen 348 AILLGILPALMVWKARKRK--PKQPYRVPG 375 (394)
T ss_pred HHHHHHHHHHHHHHHHccc--CCCCeEEeC
Confidence 33 3344444444444444 344588776
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.79 E-value=2.9e-06 Score=80.86 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhc
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSY 83 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
+.+..+++....++..|.|..+|++.++...+++.++.+.+..+... +.+++... +..+..+...+.++...+|+|
T Consensus 124 i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~---~~~~L~~~-p~~~~~~~~i~~alpv~~~SF 199 (397)
T TIGR00814 124 LLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW---NGANLTTF-PSFNGFLKTLWLTIPVMVFSF 199 (397)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHhcC-CcccchHHHHHHHHHHHHHHH
Confidence 45666777778999999999999999999999888877777655443 44444321 111123567889999999999
Q ss_pred cChhhHHhhh----hhhhCc---cccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc---h-hHHHHHHHhh-hhh
Q psy9213 84 SGWNYLNFVT----EELKNP---YKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS---N-TVAVTFGAKI-LPM 151 (378)
Q Consensus 84 ~G~e~~~~~a----~E~knP---~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~-~~~ 151 (378)
.|+|..+.++ +|.+|| +|..-|++..+..+..++|+.-..++.+..+++++.+. + +....+.+.. .+.
T Consensus 200 ~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~ 279 (397)
T TIGR00814 200 NHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAW 279 (397)
T ss_pred HccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcH
Confidence 9999999998 677655 57778999999999999999999999999998886431 1 2222222222 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 183 (378)
...+..+...++..+|..+...+...-+..+-
T Consensus 280 i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 280 ISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444445555555555555555555544
No 45
>PRK10483 tryptophan permease; Provisional
Probab=98.68 E-value=2.6e-05 Score=74.18 Aligned_cols=244 Identities=9% Similarity=0.049 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhc
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSY 83 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
.-++.+.+++..+-+.|.|...|+|.++...+++.++..+...+.. -+.++..+.-..........+.++...+++|
T Consensus 129 ~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~---i~~~~L~~~~~~~~~~~~~~~~alPvl~~SF 205 (414)
T PRK10483 129 AAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGH---VQPATLFNVAESNASYAPYLLMTLPFCLASF 205 (414)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHhccccccchhHHHHHHHHHHHHhhc
Confidence 4566788888889999999999999999999998888766653332 2333332211111112344667788888888
Q ss_pred cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhc----chhH---HHHHHHhhh-hhhhhH
Q psy9213 84 SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLS----SNTV---AVTFGAKIL-PMLTWL 155 (378)
Q Consensus 84 ~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~----~~~~---~~~~~~~~~-~~~~~~ 155 (378)
.=...++.+.+..++-.|.+.|++..+..+..++|++-..++.+..|++++.+ .++. ...+.+... ++...+
T Consensus 206 gfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~ 285 (414)
T PRK10483 206 GYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLL 285 (414)
T ss_pred cCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHH
Confidence 87788899988877655689999999999999999999999999999887531 2211 122222221 223344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHH
Q psy9213 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMC--IDDVFALINYATFVE 233 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~--~~~~~~l~~~~~~~~ 233 (378)
..+...++..+|-.+...+....+..+ +++.+++.+. ....+++.+-.+++.+ .+.|-.-.+.++...
T Consensus 286 ~~~Fa~~Ai~TSFlGv~LGL~d~l~D~---------~k~~~~~~~r-~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~ 355 (414)
T PRK10483 286 LVVFSNFAVASSFLGVTLGLFDYLADL---------FGFDDSAMGR-FKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAA 355 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCCccccc-eeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555555555444444443332 2222211111 1123334444444332 344544455555443
Q ss_pred HHHH-HHHHHHHhhhhccCCCCCCCccchh
Q psy9213 234 SSFT-LTSVTGLLWLRLKRPDLKRPIKVSI 262 (378)
Q Consensus 234 ~~~~-~~~~~~~~~~r~~~~~~~r~~~~~~ 262 (378)
.+-. +++.+-..+.|||.+ +.+|+.|.
T Consensus 356 ~il~~ilP~lM~~~~Rk~~~--~~~y~v~G 383 (414)
T PRK10483 356 TIWAAIVPALLARASRKRFG--SPKFRVWG 383 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCCceecC
Confidence 3333 333333334443322 35688887
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.61 E-value=9.5e-05 Score=70.52 Aligned_cols=239 Identities=10% Similarity=0.069 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhcc
Q psy9213 5 LFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYS 84 (378)
Q Consensus 5 ~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
..+.+.++...+-+.|.|...|++.++...+++.++......+.. -+.+++... + ++....+.++...+++|.
T Consensus 123 ~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~---~~~~~L~~~--~--~~~~~~~~~iPvl~~SFg 195 (403)
T PRK15132 123 GVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPH---IHKVNLLTL--P--LQQGLALSAIPVIFTSFG 195 (403)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHhcC--C--ccccHHHHHHHHHHHHhh
Confidence 345566666668888999999999999999998877665554433 233343321 1 111136677888888888
Q ss_pred ChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhc----ch---hHHHHHHHhh-hhhhhhHH
Q psy9213 85 GWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLS----SN---TVAVTFGAKI-LPMLTWLM 156 (378)
Q Consensus 85 G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~-~~~~~~~~ 156 (378)
=...++.+..-.++-+|.+.|++..+..+..++|++-..++.+..|.+++.. +. +....+.+.. .++...+.
T Consensus 196 fh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 275 (403)
T PRK15132 196 FHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAV 275 (403)
T ss_pred CCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHH
Confidence 8888899999888777889999999999999999999999999999887532 21 2333333322 23344555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHH--hhhhHHHHHHHHHHH-H
Q psy9213 157 PLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLM--CIDDVFALINYATFV-E 233 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~--~~~~~~~l~~~~~~~-~ 233 (378)
.+...++..+|..+...+....+..+-+.+ .+++.+... .+++.+...++. ..+.+....+.++.. .
T Consensus 276 ~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--------~~~~~r~~~--~~l~flppli~a~~~P~~F~~al~~aG~~~a 345 (403)
T PRK15132 276 HLFADLALATSFLGVALGLFDYLADLFQRR--------NTVGGRLQT--GLITFLPPLAFALFYPRGFVMALGYAGVALA 345 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------ccccCCchh--ehhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555666666665555555554432211 111222222 233333333333 334555555555543 3
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCccchh
Q psy9213 234 SSFTLTSVTGLLWLRLKRPDLKRPIKVSI 262 (378)
Q Consensus 234 ~~~~~~~~~~~~~~r~~~~~~~r~~~~~~ 262 (378)
.+...++.....+.|++++ +++||.|.
T Consensus 346 il~~ilP~~m~~~~r~~~~--~~~y~v~g 372 (403)
T PRK15132 346 VLALLLPSLLVWQSRKQNP--QAGYRVKG 372 (403)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCCccCCC
Confidence 4455666666666654432 35688766
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.41 E-value=0.00032 Score=66.78 Aligned_cols=129 Identities=10% Similarity=0.085 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCC-CCCChhhHHHHHHHHhH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHP-MQN-SNWDPGYVALSFYSGLF 81 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 81 (378)
..++.+.++...+-+.|.|...+.+.++...+++.++..+..+.... ++++..+. .+. ........+.++...+.
T Consensus 128 ~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i---~~~~L~~~~~~~~~~~~~~~i~~alPVl~~ 204 (415)
T PRK09664 128 IVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQV---DYSILRDATSTTAGTSYFPYIFMALPVCLA 204 (415)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cHHHHhcCccccccchHHHHHHHHHHHHHH
Confidence 34577888888999999999999999999999988877666544332 33333221 111 11112346667777777
Q ss_pred hccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhh
Q psy9213 82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL 135 (378)
Q Consensus 82 ~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~ 135 (378)
+|.=...++.+..-.++-.|.+.|++..+..+..++|++-..+..+..|++++.
T Consensus 205 SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~ 258 (415)
T PRK09664 205 SFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFK 258 (415)
T ss_pred hhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 777677788888877766678999999999999999999998988888888753
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.31 E-value=0.00027 Score=68.03 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCChhhHHHHHHHHhHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNS-NWDPGYVALSFYSGLFS 82 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (378)
+...++...+..+...|.+..-|.+..+...+++.++++.+..+... ++++... .+.. ...+..++.++...+++
T Consensus 130 ~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~---~~~~l~~-~~~~~~~~~~~~~~~ipv~vfs 205 (415)
T COG0814 130 LGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHW---NPANLFA-LPSASQSFWKYLLLAIPVFVFS 205 (415)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc---CHHHHhc-ccccchhhHHHHHHHhhHHHhh
Confidence 34566777777799999999999999999999998887776544432 2222211 1111 24456788999999999
Q ss_pred ccChhhHHhhhhhhhCcccc-chhHHHhHHHHHHHHHHHHHHHHHhcCChh
Q psy9213 83 YSGWNYLNFVTEELKNPYKN-LPKAICVSMPLSTIVYLLVNVAYFVVLSKE 132 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~-ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 132 (378)
|.+....+.+..|.|+++++ ++|++..+..+..++|+...+...+..+.+
T Consensus 206 F~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 206 FGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred hhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999988877 999999999999999999988888887765
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.13 E-value=0.0018 Score=62.01 Aligned_cols=178 Identities=11% Similarity=0.061 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCC--CC--CCC-hhhHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAH-PMQ--NS--NWD-PGYVALSF 76 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~--~~--~~~-~~~~~~~~ 76 (378)
++.+.++.+++..+-..|.|..-|++.++...+++.++.+.+..+..+ +.+++.+ +.+ +. ..+ ....+.++
T Consensus 139 ~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w---~~~~L~~~~~~~~~~~~~~~~~~~l~~~i 215 (443)
T PRK13629 139 GFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYW---NSAVIDQVDLGSLSLTGHDGILVTVWLGI 215 (443)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHhcCccccccccccccHHHHHHHHH
Confidence 457788899999999999999999999999999999988888766654 3333321 111 11 111 12356677
Q ss_pred HHHhHhccChhhHHhhhhh----h------hCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhh----cchhHHH
Q psy9213 77 YSGLFSYSGWNYLNFVTEE----L------KNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL----SSNTVAV 142 (378)
Q Consensus 77 ~~~~~~~~G~e~~~~~a~E----~------knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~----~~~~~~~ 142 (378)
...+++|.=.-.++.++.. . ++.+|..-|++..+..+..++|++-.+.+.+..+++++. ++.+...
T Consensus 216 Pv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls 295 (443)
T PRK13629 216 SIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLS 295 (443)
T ss_pred HHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHH
Confidence 7777776555555555544 3 223477889999999999999999999999999999864 2233244
Q ss_pred HHHHhhh----------hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 143 TFGAKIL----------PMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183 (378)
Q Consensus 143 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 183 (378)
.+.+..- +....+..+...++..+|-.+...+.---+..+.
T Consensus 296 ~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~ 346 (443)
T PRK13629 296 YLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLI 346 (443)
T ss_pred HHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322 2233344444444444555554444444444444
No 50
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.91 E-value=0.0048 Score=59.02 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHH----HH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSF----YS 78 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (378)
++..+++..+...+.+...|..-++..+++=+.++.++++++.++.... +++..-..++.. +.-..|+..|- ..
T Consensus 119 ~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~-g~~~~~~~~y~~-~~f~~Gf~eGY~TMD~l 196 (427)
T PF05525_consen 119 LIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPI-GPPQAPSGAYAS-NPFFKGFLEGYQTMDAL 196 (427)
T ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCccccchhhhh-hHHHHHHHHHHhhhhHH
Confidence 4567788888999999999999999999999999999999998887632 222111111111 11111222211 11
Q ss_pred HhHhccChhhHHhhhhhhhCc---cccchhHHHhHHHHHHHHHHHHHHHHHhcCCh-hhhhcchhHHHHHHHhhhhhhh-
Q psy9213 79 GLFSYSGWNYLNFVTEELKNP---YKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK-EELLSSNTVAVTFGAKILPMLT- 153 (378)
Q Consensus 79 ~~~~~~G~e~~~~~a~E~knP---~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~- 153 (378)
+...|...=..+--....||+ .|..-++-..+.....++|....+.-....+. ++..+.........++.+|..+
T Consensus 197 aal~Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~ 276 (427)
T PF05525_consen 197 AALAFGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQ 276 (427)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHH
Confidence 222333222222222223333 34444555555555667777764443322222 2222334556677788888755
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHH-HHHHHHHhhhhHHHHHHHHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLC-IITLLLMCIDDVFALINYATFV 232 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~-~~~~i~~~~~~~~~l~~~~~~~ 232 (378)
.++.+.+.++|+++..+-+.+++.... +..| +.+|...+... +++.++. .-.++.+++++.-.
T Consensus 277 ~ll~iiv~lACLTTaIGL~~a~a~yf~-------------~~~~--kisY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 277 ILLGIIVFLACLTTAIGLISACAEYFS-------------ELFP--KISYKVWVIIFTIFSFIIA-NLGLDQIIKISVPI 340 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhc--ccChHHHHHHHHHHHHHHH-HhCHHHHHHHHHHH
Confidence 677888899999999888888877654 4442 34444443333 3333322 22466666665544
Q ss_pred HHHHH----HHHHHHHhhhhccCCCCCCCccchhHHHHH
Q psy9213 233 ESSFT----LTSVTGLLWLRLKRPDLKRPIKVSIILPIT 267 (378)
Q Consensus 233 ~~~~~----~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~ 267 (378)
..+.| .++.+.++ ++..++++..||...+.+.+
T Consensus 341 L~~iYP~~IvLIll~l~--~~~~~~~~~~y~~~v~~t~i 377 (427)
T PF05525_consen 341 LMFIYPVAIVLILLNLF--DKFIKNKKIVYRGTVLVTFI 377 (427)
T ss_pred HHHHhHHHHHHHHHHHH--HHHhCCCCceeeeeehHHHH
Confidence 33333 33333332 22222324457765544433
No 51
>PRK11375 allantoin permease; Provisional
Probab=97.73 E-value=0.038 Score=54.41 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 6 FILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMW 48 (378)
Q Consensus 6 ~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 48 (378)
..++.++.+.+-++|.|...+++.+...+.++..+.+.+..+.
T Consensus 162 ~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~ 204 (484)
T PRK11375 162 FLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAIS 204 (484)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666778899999998888887777666655554443
No 52
>KOG1304|consensus
Probab=97.72 E-value=0.0025 Score=60.70 Aligned_cols=61 Identities=18% Similarity=0.416 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHhHhccChhhHHhhhhhhhCccccch---hHHHhHHHHHHHHHHHHHHHHHhcCC
Q psy9213 69 PGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLP---KAICVSMPLSTIVYLLVNVAYFVVLS 130 (378)
Q Consensus 69 ~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip---~ai~~~~~~~~~~y~l~~~~~~~~~~ 130 (378)
+.++...+.++.|+|.|...+--+=+++|+|++ +| ..+-.++.+++++|...-+......+
T Consensus 240 ~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG 303 (449)
T KOG1304|consen 240 WSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG 303 (449)
T ss_pred hhhhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 667888999999999999999999999999965 67 89999999999999987544443333
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.72 E-value=0.0056 Score=56.95 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFS 82 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (378)
+.+...+++........|.+..+|...+...+.++.++.+... .....++++..+-++ .+...+..+.....+.
T Consensus 114 ~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~---~~~~~~~~~l~P~~~---~g~~~i~~~~~~~~~~ 187 (320)
T PF03845_consen 114 WVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLL---SIPNIDWDNLLPVLE---SGIKPILKGSLVISFP 187 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCCHHHeeCccc---CChHHHHHHHHHHHHH
Confidence 4566677788888899999999997776666666554444332 233344555444333 3356678888888899
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhh-hh----hhhhHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI-LP----MLTWLMP 157 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~----~~~~~~~ 157 (378)
|.|.|....+...+|||+| ..|....+...++++|.+..+...+..+++.......|.....+.. .+ -...++.
T Consensus 188 ~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i 266 (320)
T PF03845_consen 188 FGGIEILLFLFPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFI 266 (320)
T ss_pred HHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999865 6899999999999999999989999999888776654443332221 22 2334555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Q psy9213 158 LFVSCSTFGALNGAIFASSRLFFVG 182 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~sR~l~~~ 182 (378)
..-..+.+......+++.++.+..+
T Consensus 267 ~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 267 LIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777778777776543
No 54
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.61 E-value=0.042 Score=51.63 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHH----HHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALS----FYS 78 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 78 (378)
.+...++..+...+.+...|..-++..+++=++++.++.+++..+... .+......+.+++.+ -..|+..| =..
T Consensus 121 ~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p-~g~~~~a~~~y~~~p-f~~GfleGY~TMDaL 198 (431)
T COG1114 121 FIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPP-AGPISAASGAYQSQP-FSKGFLEGYLTMDAL 198 (431)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCCcccccHHHHhCh-HHHHHhcchHHHHHH
Confidence 466778888899999999999999999999999999888888755542 222221122222111 11122211 122
Q ss_pred HhHhccChhhHHhhhhhhhCccccchhHHHhHHH----HHHHHHHHHHHHHHhcCChhhh---hcchhHHHHHHHhhhhh
Q psy9213 79 GLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMP----LSTIVYLLVNVAYFVVLSKEEL---LSSNTVAVTFGAKILPM 151 (378)
Q Consensus 79 ~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~----~~~~~y~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~ 151 (378)
+..+|...-.-+.=..-.++++ .+.|-...+-+ .....|... ...+....+.. .+..........+.+|.
T Consensus 199 Aal~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i~La~iY~~L--~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~ 275 (431)
T COG1114 199 AALAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAILLALIYLSL--FYLGATSASAAGLAANGGQILSAYSQHLFGS 275 (431)
T ss_pred HHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHhccchHhhcccccchHHHHHHHHHHHhch
Confidence 3334443332222223333433 33333333322 233444443 33333333222 22234455566777887
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9213 152 LT-WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYAT 230 (378)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~ 230 (378)
.+ .+..+.+.++|+.+..+-+.+++.. |+|.-||-.-..+++++ .+++.++. ...++.++.+..
T Consensus 276 ~G~~lL~~iv~lACLTTaiGLi~a~aef-------------F~~~~p~~SY~~~v~if-~i~sflva-n~GL~~Ii~isv 340 (431)
T COG1114 276 YGSILLGLIVFLACLTTAVGLIVACAEF-------------FSKLVPKLSYKTWVIIF-TLISFLVA-NLGLEQIIKISV 340 (431)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcccccHHHHHHHH-HHHHHHHH-HhhHHHHHHHHH
Confidence 54 6667778888888888777776654 55555433333333322 22233322 224555555443
Q ss_pred HH----HHHHHHHHHHHHhhhhccCCCCCCCccchhHHHH
Q psy9213 231 FV----ESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPI 266 (378)
Q Consensus 231 ~~----~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~ 266 (378)
-. +=++..++.+.+ .++..+..++.|+...+.+.
T Consensus 341 PvL~~iYPiaI~Lv~l~~--~~k~~~~~~~~y~~~l~~t~ 378 (431)
T COG1114 341 PVLTAIYPIAIALVLLSF--ARKLWKNSKRVYRLTLLVTL 378 (431)
T ss_pred HHHHHHhHHHHHHHHHHH--HHHHhcCcchhHHHHHHHHH
Confidence 32 222333333333 34444444556776664443
No 55
>PHA02764 hypothetical protein; Provisional
Probab=97.49 E-value=0.0054 Score=55.15 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhh
Q psy9213 72 VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPM 151 (378)
Q Consensus 72 ~~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (378)
...+...-.-.|.=.|+....++|.||-+|+...+-..+...+.+.-+..+ +..+
T Consensus 183 ~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s--------y~n~----------------- 237 (399)
T PHA02764 183 LLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS--------YSNL----------------- 237 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh--------hhhH-----------------
Confidence 344555555556667999999999999999887777777666555444432 1110
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCch
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPC 203 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~ 203 (378)
.+..+...+--++-+....-..||..++||-|+.+|+.|+|.| .++|.
T Consensus 238 --~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~--~nv~~ 285 (399)
T PHA02764 238 --NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKIN--PNVLL 285 (399)
T ss_pred --HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccC--CCcee
Confidence 0011112233344444555678999999999999999999987 46776
No 56
>PLN03074 auxin influx permease; Provisional
Probab=97.44 E-value=0.056 Score=53.06 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=47.3
Q ss_pred ChhhHHHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCC
Q psy9213 68 DPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLS 130 (378)
Q Consensus 68 ~~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 130 (378)
++..++.++....|+|.|.-.....-.|+|||++ .++....+...+...|+...+......+
T Consensus 231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~fG 292 (473)
T PLN03074 231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAFG 292 (473)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHeeeeeec
Confidence 4556667777789999999999999999999965 8888777777777777776444433333
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.44 E-value=0.054 Score=49.33 Aligned_cols=88 Identities=10% Similarity=0.195 Sum_probs=59.1
Q ss_pred cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHHHHHHH
Q psy9213 84 SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCS 163 (378)
Q Consensus 84 ~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (378)
........+++|+|++ |+..+|-..+-++.++...+....+....| ++.+.+-|.....+..-+..+.++.+.+...
T Consensus 193 ~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~ 269 (349)
T COG3949 193 VAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNFSPLIGLVMSVIIWLE 269 (349)
T ss_pred hHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445567788999996 667788888888888777777666655544 5656666666665555555556666666666
Q ss_pred HHHHHHHHHHh
Q psy9213 164 TFGALNGAIFA 174 (378)
Q Consensus 164 ~~~~~~~~~~~ 174 (378)
..++..+.+++
T Consensus 270 IytT~vg~iy~ 280 (349)
T COG3949 270 IYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHH
Confidence 77666665555
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.13 Score=49.44 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIA 45 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 45 (378)
...++.-++.++..++|.|...+++.+......+..+.....
T Consensus 132 ~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~ 173 (442)
T COG1457 132 AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLAL 173 (442)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888899999999999999988887776655543
No 59
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.27 E-value=0.16 Score=48.81 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHH----HH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSF----YS 78 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (378)
++.++++..+...+.++..|..-++..+++=..++.++++++.++.... +...+-..++... .-..|+..|- ..
T Consensus 123 ~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~-g~~~~~~~~y~~~-~f~~Gf~eGY~TMDal 200 (439)
T PRK15433 123 FIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPA-GSISTATEAYQNA-AFSNGFVNGYLTMDTL 200 (439)
T ss_pred HHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCcchhhhhh-hHHHHHHhhHHHHHHH
Confidence 3567788888999999999999999999999999999999988887632 2211110111111 0011222111 11
Q ss_pred HhHhccChhhHHhhhhhhhCcc---ccchhHHHhHHHHHHHHHHHHHHHHHhcCC-hhhhhcchhHHHHHHHhhhhh-hh
Q psy9213 79 GLFSYSGWNYLNFVTEELKNPY---KNLPKAICVSMPLSTIVYLLVNVAYFVVLS-KEELLSSNTVAVTFGAKILPM-LT 153 (378)
Q Consensus 79 ~~~~~~G~e~~~~~a~E~knP~---k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~-~~ 153 (378)
+...|...=..+--....||+| |..-++-..+.....++|....+.-....+ .++..+..........+.+|. ..
T Consensus 201 aal~Fg~iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~ 280 (439)
T PRK15433 201 GAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGS 280 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHH
Confidence 2222222222222233344543 333344455555566777776544432222 111112233334445555555 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFV 181 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 181 (378)
.+..+.+.++++++..+-.++.++....
T Consensus 281 ~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 281 FLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778889999999999988888877544
No 60
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.13 E-value=0.1 Score=51.30 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN---IAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|+.- +=+.++=++.+.+.|+...... |+- +++. +..++ ..+ +.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~~ig~~F---gPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~--~~~-~~ 205 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTAKIGKLF---GPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNG--WIG-FF 205 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHH---hHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcC--Cch-hh
Confidence 46778888888889888887777763 3333333333344455544332 221 1110 11111 112 23
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+...+.+.+|-|+.- |+==.-.+|+|-++-..-+.-+.++.-+.+-+.....| ++. .-++....-+|+-+
T Consensus 206 ~LG~V~L~~TGaEALy--ADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p-~~~------~npFf~~~P~~~~~ 276 (534)
T PF02705_consen 206 VLGAVFLCVTGAEALY--ADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP-EAV------SNPFFLLIPEWLLW 276 (534)
T ss_pred hcchHHHHHhhHHHHH--hhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc-chh------hhHHHHHhHHHHHH
Confidence 3445667888999653 33333444555444443233233222222223222222 111 11233333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCCC--C--CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVKR--Y--TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k~--~--~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++.+-+..+.+.++=-+....-+-|.+|+. ..+.+++. + .|..--++......+.+.+.+-.++.+++
T Consensus 277 p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AY 356 (534)
T PF02705_consen 277 PMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAY 356 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHH
Confidence 3333333343333333333443444445688999952 23333222 2 34444444444444455577888899999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9213 230 TFVESSFTLTSVTGLL 245 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~ 245 (378)
++.....+.++.+...
T Consensus 357 GiAVt~tM~iTT~L~~ 372 (534)
T PF02705_consen 357 GIAVTGTMLITTILLF 372 (534)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988887777755443
No 61
>KOG1303|consensus
Probab=97.08 E-value=0.066 Score=51.68 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=49.8
Q ss_pred HHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCC
Q psy9213 73 ALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLS 130 (378)
Q Consensus 73 ~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 130 (378)
+.++....|+|.|.-...+.-..+|+|+| ++|+...+...++++|+..+.....+.+
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG 287 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFG 287 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 67778889999999999999999999998 9999999999999999998666544443
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=96.76 E-value=0.00019 Score=69.10 Aligned_cols=182 Identities=12% Similarity=0.098 Sum_probs=98.7
Q ss_pred CChhhHHHHHHHHhHhccChhhHHhhhhhhhCccc--cchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHH
Q psy9213 67 WDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYK--NLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTF 144 (378)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~k--~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~ 144 (378)
.+..++..++....++|.+........+|+|+|+| ++.++...+...+.++|.+.........+.+ .. ++....+
T Consensus 189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~--~~il~n~ 265 (409)
T PF01490_consen 189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQ--GNILLNL 265 (409)
T ss_pred chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeee-ec--chhhhcC
Confidence 44567889999999999999999999999999876 4569999999999999999766554433321 11 1111111
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC--CChhHhhhhcCCCCCchhH--HHHHHHHHHHHHhhh
Q psy9213 145 GAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNG--HLPKAIALINVKRYTPCPS--LVFLCIITLLLMCID 220 (378)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg--~lP~~f~~~~~k~~~P~~a--i~~~~~~~~i~~~~~ 220 (378)
.... +...+..+...++.+.+..-......+.+...-++. ..++. .+..++.+..+.. +.+......+.....
T Consensus 266 ~~~~--~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp 342 (409)
T PF01490_consen 266 PNDD--VLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDS-PKNTPSSRWLRYLIRIILVLLSFLIAIFVP 342 (409)
T ss_pred CCcc--cccccccccchhhhhhccccccchhHhhhhhheeccccccccc-cccccccceeeeeeecchhhhhhhhhhhcc
Confidence 1100 122333344444444444334444444444433221 00000 0000011111111 112222222233345
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHhhhhccCCCC
Q psy9213 221 DVFALINYATF--VESSFTLTSVTGLLWLRLKRPDL 254 (378)
Q Consensus 221 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~ 254 (378)
++..+.++.+- +..++|.++.+.+++.++++...
T Consensus 343 ~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 343 NFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred chhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 67776666543 34678899988888887766433
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.59 E-value=0.79 Score=44.50 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWF 49 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 49 (378)
++-..++.++...+-..|.+...|++.+......+....+.+-....
T Consensus 172 ~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~ 218 (497)
T COG1953 172 LICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVK 218 (497)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 34445566666677788999999999999999988888887766554
No 64
>PRK11017 codB cytosine permease; Provisional
Probab=96.56 E-value=0.79 Score=44.14 Aligned_cols=100 Identities=15% Similarity=0.031 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHH-hHhccCh
Q psy9213 8 LLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSG-LFSYSGW 86 (378)
Q Consensus 8 ~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~ 86 (378)
++.++......+|.|...+++++......+..+...+.... ..+..++..+. .+. +...+..++... .+..++.
T Consensus 126 i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~--~~~g~~~~~~~-~~~--~~~~~~~a~~~~~g~~~~~~ 200 (404)
T PRK11017 126 LSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVN--DVGGLDGLKAI-VPA--EPLDFSAALTLVVGSFISGG 200 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhhhhcC-CCC--CcccHHHHHHHHHHHHHHhH
Confidence 34455666778888888888888776665544443332111 11112222111 111 112344443332 1223344
Q ss_pred hhHHhhhhhhhCccccchhHHHhHHHH
Q psy9213 87 NYLNFVTEELKNPYKNLPKAICVSMPL 113 (378)
Q Consensus 87 e~~~~~a~E~knP~k~ip~ai~~~~~~ 113 (378)
-..+.++...|+|++.. .+...+..+
T Consensus 201 ~~~~DysRy~k~~~~~~-~~~~lg~~i 226 (404)
T PRK11017 201 TLTADFVRFGRSAKIAV-LATMVAFFL 226 (404)
T ss_pred hcCCChHhhccCcccee-ehhHHHHHH
Confidence 45566777778765433 455544433
No 65
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.52 E-value=1 Score=44.80 Aligned_cols=39 Identities=5% Similarity=0.146 Sum_probs=24.5
Q ss_pred HHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9213 141 AVTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLF 179 (378)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 179 (378)
...+..+..| ++.-++.++++.+..++..+.+.+.+-.+
T Consensus 314 ~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 314 FIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAI 353 (502)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 35566667777778888888887777553
No 66
>PTZ00206 amino acid transporter; Provisional
Probab=96.31 E-value=0.53 Score=46.28 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=49.1
Q ss_pred hHHHHHHHHhHhccChhhHHhhhhhhhCcc-ccchhHHHhHHHHHHHHHHHHHHHHHhcCC
Q psy9213 71 YVALSFYSGLFSYSGWNYLNFVTEELKNPY-KNLPKAICVSMPLSTIVYLLVNVAYFVVLS 130 (378)
Q Consensus 71 ~~~~~~~~~~~~~~G~e~~~~~a~E~knP~-k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 130 (378)
....++....|+|.+.......-+|.|||+ |+..+.+..+...+.++|.+..+......+
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG 317 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFG 317 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 467788889999999999999999999864 667888888999999999987665544443
No 67
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.29 E-value=0.75 Score=44.09 Aligned_cols=177 Identities=11% Similarity=0.032 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--------CCCCCCC--CChhhH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIA--------HPMQNSN--WDPGYV 72 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~ 72 (378)
+..++++.++..++-+-|+|..+++...+.=++.+.-++..+.-+.. |.++.+ ..|++.. ++..|.
T Consensus 140 ~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~----n~~~ip~~~~~If~~AF~~~aa~GG~~G~ 215 (416)
T PF01235_consen 140 WITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII----NIDQIPAAFSLIFSSAFTPKAAFGGFAGS 215 (416)
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHcCCccchhhHHHH
Confidence 45677777788888888999888877766655555444443332222 222211 1233321 122221
Q ss_pred HH------HHHHHhHh---ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhc--chhHH
Q psy9213 73 AL------SFYSGLFS---YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLS--SNTVA 141 (378)
Q Consensus 73 ~~------~~~~~~~~---~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~--~~~~~ 141 (378)
.. ++.=..|+ =.|....++.+.|+++|.|.=-.++.-..+-..++..++.+.+...-.++...+ .....
T Consensus 216 ~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~ 295 (416)
T PF01235_consen 216 TIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALT 295 (416)
T ss_pred HHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHH
Confidence 11 22223332 356677788888999998865555555544455555555554443332222111 12222
Q ss_pred HHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 142 VTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183 (378)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 183 (378)
.......+| +...++.+.+++-.+++..++.+.+-+.+.-+-
T Consensus 296 ~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 296 QAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 223344444 456888899999999999999999988887664
No 68
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.29 E-value=1.3 Score=43.72 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=40.8
Q ss_pred hhhCccccchhHHHhHHHHHHHHHHHHHHHH-HhcCChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHH
Q psy9213 95 ELKNPYKNLPKAICVSMPLSTIVYLLVNVAY-FVVLSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVSCSTFGALNGAI 172 (378)
Q Consensus 95 E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
..||+ |+..|+...+.+....+++...... ....-.++..+.+.....+..+..| ++.-++.++++.+..++..+.+
T Consensus 262 aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l 340 (483)
T PRK09442 262 SYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQL 340 (483)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665 4566777766655555544433221 1111011222222223333334444 3455556666777777777777
Q ss_pred HhhhhH
Q psy9213 173 FASSRL 178 (378)
Q Consensus 173 ~~~sR~ 178 (378)
.+.+-.
T Consensus 341 ~~~ss~ 346 (483)
T PRK09442 341 LQSSST 346 (483)
T ss_pred HHHHHH
Confidence 666554
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.21 E-value=1.4 Score=43.32 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=46.3
Q ss_pred HhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhc-CChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHHHHHHHH
Q psy9213 90 NFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVV-LSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVSCSTFGA 167 (378)
Q Consensus 90 ~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (378)
.+-.-..||+ |+..|+...+.+....++....+..... .-.++..+.+.....+..+..| +..-++.++++.+..++
T Consensus 256 ~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST 334 (471)
T TIGR02119 256 AVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMST 334 (471)
T ss_pred HHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence 3344556775 6677888877766555554433322111 1112222223223333334444 34455666667777777
Q ss_pred HHHHHHhhhhHH
Q psy9213 168 LNGAIFASSRLF 179 (378)
Q Consensus 168 ~~~~~~~~sR~l 179 (378)
..+.+.+.+-.+
T Consensus 335 ~~s~l~~~ss~~ 346 (471)
T TIGR02119 335 VNSLLLQSSSTI 346 (471)
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 70
>KOG1305|consensus
Probab=96.21 E-value=1.3 Score=42.68 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=49.1
Q ss_pred hhHHHHHHHHhHhccChhhHHhhhhhhhCcc-ccchhHHHhHHHHHHHHHHHHHHHHHhc
Q psy9213 70 GYVALSFYSGLFSYSGWNYLNFVTEELKNPY-KNLPKAICVSMPLSTIVYLLVNVAYFVV 128 (378)
Q Consensus 70 ~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~-k~ip~ai~~~~~~~~~~y~l~~~~~~~~ 128 (378)
.++..++....++|+..+.....-.|.|||+ |++-+....+......+|..........
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~ 253 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLT 253 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 5788999999999999999999999999996 5777888888888888888875554433
No 71
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.04 E-value=1.5 Score=42.10 Aligned_cols=87 Identities=10% Similarity=-0.138 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhccChhhHHhhhhhhhC---c
Q psy9213 23 WVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKN---P 99 (378)
Q Consensus 23 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~a~E~kn---P 99 (378)
-+.+++.+...+.+...+.+....+...+. -.+.+..++-+...+.......+...-....+ +..-.-++.+++ .
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~-~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP-~i~y~~s~~v~~~~~~ 222 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFVAPPP-WGEVAKGDFLPSSPWTEALLLIIAILGATVMP-HILYLHSSLVQDAGIK 222 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHhccCCCCCCcchhHHHHHHHHhccchhH-HHHHhhcceecccccc
Confidence 455666666666666555555554443211 11112223333332222233333333333333 444334444443 3
Q ss_pred cccchhHHHhHH
Q psy9213 100 YKNLPKAICVSM 111 (378)
Q Consensus 100 ~k~ip~ai~~~~ 111 (378)
++..++.+..+.
T Consensus 223 ~~~~~~~~~~~~ 234 (416)
T COG1914 223 GEENLRALRYSR 234 (416)
T ss_pred chhHHHHHHHHH
Confidence 455556665553
No 72
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.83 E-value=0.25 Score=50.05 Aligned_cols=227 Identities=14% Similarity=0.060 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN---IAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|+.- +=+.++=++.+.+.|+......+|.- +++. +..+ +..+ +.
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~~F---gPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~--~~~~-~~ 242 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGFTF---APIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEY--GTVG-WV 242 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHC--CCce-ee
Confidence 45778888888888888877766654 33333334444444555443323221 1111 1111 1111 12
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+.+|-|+. +|+==.--+|.|-+|-..-+.-+.++.-+.+-++...-| +.. +++ +....-+|+.+
T Consensus 243 ~LG~V~L~iTGaEAL--yADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~~~--~Np----Ff~~~P~~~~~ 313 (688)
T TIGR00794 243 SLGGVVLSITGVEAM--FADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-EAI--KNP----FFLSIPDWALW 313 (688)
T ss_pred eccchhheeccHhhh--hcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-chh--cCc----HHHhCchHHHH
Confidence 334456788999964 333334444555444442333233222222333322222 221 121 22333334434
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCC--CC--CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVK--RY--TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k--~~--~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=.+....-+-|.+|+. ..+.+++ .+ .|..--++...+..+.+.+.+-.++.+++
T Consensus 314 p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AY 393 (688)
T TIGR00794 314 PLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAY 393 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHh
Confidence 3333333333333333333333333344578999952 2333322 22 34433333333333344567778899998
Q ss_pred HHHHHHHHHHHHHHH
Q psy9213 230 TFVESSFTLTSVTGL 244 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~ 244 (378)
++.....+.++.+-+
T Consensus 394 GiaVt~tM~iTT~L~ 408 (688)
T TIGR00794 394 GIAVTGTFLVTTCLM 408 (688)
T ss_pred hhhhhhhhHHHHHHH
Confidence 888777666664443
No 73
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=95.82 E-value=0.033 Score=36.17 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=37.9
Q ss_pred ccchh--HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheee
Q psy9213 258 IKVSI--ILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWK 308 (378)
Q Consensus 258 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (378)
||.|. ++|.++++.+++++.- .+..++....+|+++|+++|+.+.+++
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~---L~~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQ---LSALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHH---hhHhHHHHHHHHHHHHHHHHHheeeec
Confidence 45666 7899999999999864 445677788899999999999766553
No 74
>PLN00148 potassium transporter; Provisional
Probab=95.67 E-value=0.12 Score=52.63 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN---IAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|++---...+=++. +...|+......+|.- +++. +..++ ..+ +.
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~---i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~--~~g-~~ 271 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLS---IGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTG--KDG-WI 271 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHH---HHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCC--Cce-EE
Confidence 457788888888898888877766543333333333 3344444443333321 2211 11111 111 12
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+.+|-|+. +|+==.-.+|.|-+|-...+.-+.++.-+.+.++..--| ++. +++ +....-+++-+
T Consensus 272 ~LGgV~L~iTGaEAL--yADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~~~--~np----Ff~~iP~~~~~ 342 (785)
T PLN00148 272 SLGGILLSITGTEAM--FADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-PSI--PNS----FYDSIPDPVFW 342 (785)
T ss_pred eecchheeccchhhh--hhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-ccc--cCc----HHHhCCchhHH
Confidence 233456678999954 344444555666555544433333333333333332222 221 111 22333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCCC-C---CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVKR-Y---TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k~-~---~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=-+....-+-|.+|+. .-+.+++. | .|..--++...+..+.+.+.+-..+.+++
T Consensus 343 P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AY 422 (785)
T PLN00148 343 PVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAY 422 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhh
Confidence 4333333333333333333333333334577899952 22333222 2 34444444444444445566777888888
Q ss_pred HHHHHHHHHHHH
Q psy9213 230 TFVESSFTLTSV 241 (378)
Q Consensus 230 ~~~~~~~~~~~~ 241 (378)
++.....++++.
T Consensus 423 GiAV~~vM~iTT 434 (785)
T PLN00148 423 GLACMTVMFITT 434 (785)
T ss_pred hhheeeHHHHHH
Confidence 877665555553
No 75
>PLN00151 potassium transporter; Provisional
Probab=95.58 E-value=0.15 Score=52.08 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTE---NIAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|++---..++=++.+. ..|+......+|. .+++. |..++ ..+| .
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~---~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~--~~gw-~ 348 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLG---GIGIYNLVKYDSSVFRAFNPVYIYYFFKRNS--TKAW-S 348 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHH---HHHHHHHHhcCHHHHhhhCHHHHHHHHHhCC--CceE-E
Confidence 56788888888999999987777654333333333333 3344433333222 11111 11111 1111 2
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+++|.|+. +|+==.-.+|.|-.|-...+.-+.++.-+.+.++..--| ++. ++ .+....-+++-|
T Consensus 349 ~LGgVvLciTGaEAL--fADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~~--~n----pFy~svP~~~~w 419 (852)
T PLN00151 349 ALGGCVLCATGSEAM--FADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DSA--EQ----IFFSSVPSSLFW 419 (852)
T ss_pred Eecceeeeeccchhh--hcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-ccc--cC----cHHHhCCchhHH
Confidence 233456678899954 344444445566555444333333333333333332222 211 11 133333334334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCCCC----CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVKRY----TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k~~----~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=-+....-+-|.+|+. .-+.+++.. .|..--++...+..+.+.+.+-..+.+++
T Consensus 420 P~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AY 499 (852)
T PLN00151 420 PVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAY 499 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHh
Confidence 3333333333333333333333333334567899952 223332322 34444444444334444566777888888
Q ss_pred HHHHHHHHHHHHH
Q psy9213 230 TFVESSFTLTSVT 242 (378)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (378)
+++....++++.+
T Consensus 500 GiAV~~vM~iTT~ 512 (852)
T PLN00151 500 GIAEVGVMMVSTI 512 (852)
T ss_pred hhhhhhhhhHHHH
Confidence 8877666655533
No 76
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.52 E-value=2.5 Score=40.75 Aligned_cols=176 Identities=13% Similarity=0.033 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--------CCCCCCC--CChhhH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIA--------HPMQNSN--WDPGYV 72 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~ 72 (378)
+..++++.++...+-.-|+|..+++...+.-+..+..+...+.-... |.++.. ..|++.. +++.|.
T Consensus 167 ~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~----n~~~lp~~~~~If~~AF~~~a~~GG~~G~ 242 (425)
T TIGR00835 167 LVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIM----NIEQLPAVISLIFRSAFGGDAAAGGFAGS 242 (425)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhCCchhhHhHHHHH
Confidence 45566666666667666999999988877777666654443322211 222221 1233211 122221
Q ss_pred H------HHHHHHhHh---ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhh--hhcchhHH
Q psy9213 73 A------LSFYSGLFS---YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEE--LLSSNTVA 141 (378)
Q Consensus 73 ~------~~~~~~~~~---~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--l~~~~~~~ 141 (378)
. .++.=..|+ =.|....++.+.|+++|.|.=-.++.-..+=+.+...++.+.+...-.+++ -.+.....
T Consensus 243 ~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt 322 (425)
T TIGR00835 243 TVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLT 322 (425)
T ss_pred HHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHH
Confidence 1 133333443 256666677788889998754444443333244444454444433333331 11112222
Q ss_pred HHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy9213 142 VTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVG 182 (378)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 182 (378)
....+..+| +...++.+.+++-.+++..++.+.+-+.+.-+
T Consensus 323 ~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 323 QQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333344 55688889999999999999999888887766
No 77
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.18 E-value=0.37 Score=48.08 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENI---AHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|+.- +=+.++=++.+.+.|+..... +|+-+ ++. +..++ ..+| .
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG~~F---gPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~~--~~gf-~ 216 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVGKLF---APIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEYK--TVSF-F 216 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhCC--CceE-E
Confidence 46777888888888888877766654 333333334444445554432 33211 110 11111 1111 2
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+.+|-|+. +|+-=.-.+|.|-+|-...+.-+.++.-+.+-+..... ++.. +++ +....-+|+.+
T Consensus 217 ~LG~V~L~vTGaEAL--YADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~-p~~~--~Np----Ff~~~P~~~~~ 287 (622)
T PRK10745 217 ALGAVVLAITGVEAL--YADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKN-PEAI--KNP----FFLLAPDWALI 287 (622)
T ss_pred EecceeeeccchHHH--hhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcC-chhh--cCc----HHHhCChhHHH
Confidence 233456678899954 34444445566655544443323333323333333222 2211 122 22222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCC--CCC--chhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVK--RYT--PCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k--~~~--P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=.+....-+-|.+|+. ..+.+++ .+. |..--++...+..+.+.+.+-.++.+++
T Consensus 288 p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AY 367 (622)
T PRK10745 288 PLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAY 367 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHh
Confidence 3333333333333333333333333334578999952 2333322 232 3333333333333344566777899988
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9213 230 TFVESSFTLTSVTGLL 245 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~ 245 (378)
++.....+.++.+-+.
T Consensus 368 GiAVt~tM~iTT~L~~ 383 (622)
T PRK10745 368 GIAVTGTMVLTSILST 383 (622)
T ss_pred hhhheeHhHHHHHHHH
Confidence 8887766666644433
No 78
>PLN00149 potassium transporter; Provisional
Probab=95.14 E-value=0.91 Score=46.59 Aligned_cols=228 Identities=14% Similarity=0.071 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN---IAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|++---. .++=++.+...|+......+|.- +++. +..++ ..+ +.
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~FgPI---ml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~--~~g-~~ 272 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFLFAPV---VLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQ--RGG-WM 272 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhhhhhH---HHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCC--Cce-eE
Confidence 35788888888889998877776654333 33333333344444443333321 2211 11111 111 12
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+.+|-|+. +|+==.-.+|.|-+|-...+.-+.++.-+.+.++...-| +...+...+ +....-+++-+
T Consensus 273 ~LGgV~L~iTG~EAL--yADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p-~~~~~~~~p---Fy~~iP~~~~~ 346 (779)
T PLN00149 273 SLGGILLCITGSEAM--FADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHH-VIESDYRIG---FYVSVPEKLRW 346 (779)
T ss_pred eecchhhcccchhhh--hhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCc-chhccccCc---HHHhCCchhHH
Confidence 233456678899954 444445555666555544333333333333333332222 211111111 33333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCCCC----CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVKRY----TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k~~----~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=-+....-+-|.+|+. .-+.+++.. .|..--++...+..+.+.+.+-..+.+++
T Consensus 347 P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AY 426 (779)
T PLN00149 347 PVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNAS 426 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHh
Confidence 4434433343333333333333333344577899952 222232222 34443344433333444566777888888
Q ss_pred HHHHHHHHHHHHH
Q psy9213 230 TFVESSFTLTSVT 242 (378)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (378)
++.....++++.+
T Consensus 427 GiAV~~vM~iTT~ 439 (779)
T PLN00149 427 GLAVITVMLVTTC 439 (779)
T ss_pred hhhhehHHHHHHH
Confidence 8877666555533
No 79
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.94 E-value=3.4 Score=39.02 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 151 MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183 (378)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 183 (378)
+...++.++.+.+.+++..+...++++.+-..-
T Consensus 253 ~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 253 WARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 566888889999999999999888888876654
No 80
>PLN00150 potassium ion transporter family protein; Provisional
Probab=94.17 E-value=0.46 Score=48.59 Aligned_cols=225 Identities=12% Similarity=0.107 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCC-----CCCCCCChhhHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN---IAHP-----MQNSNWDPGYVAL 74 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~ 74 (378)
..+++++++.+..+--+|....|+.---. .++=++.+...|+......+|.- +++. +..++ ..+ +.
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~~FgPI---m~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~--~~g-~~ 288 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSFLFAPI---FLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNG--RQG-WE 288 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhhhhccH---HHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCC--Cce-EE
Confidence 45788888888889988877766654333 33333333444554443333321 1111 11111 111 12
Q ss_pred HHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhh
Q psy9213 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTW 154 (378)
Q Consensus 75 ~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (378)
.+..++.+.+|-|+. +|+==.-.+|.|-+|-...+.-+.++.-+.+.++...-| ++. ++ .+....-+++-+
T Consensus 289 ~LG~V~L~iTGaEAL--yADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~~~--~n----pFf~~iP~~~~~ 359 (779)
T PLN00150 289 SLGGIVLCMTGTEAM--FADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-EDV--ND----PFYRSLPKPIYW 359 (779)
T ss_pred Eecceeeeecchhhh--hccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-ccc--cC----cHHHhCCchhHH
Confidence 233456688999954 344444445566555443333333333333333332222 211 11 123333334434
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhH-hhhhcCCCC----CchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA-IALINVKRY----TPCPSLVFLCIITLLLMCIDDVFALINYA 229 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k~~----~P~~ai~~~~~~~~i~~~~~~~~~l~~~~ 229 (378)
.+.+...++++-+..+.+.++=-+....-+-|.+|+. .-+.++|.. .|..--++...+..+.+.+.+-..+.+++
T Consensus 360 P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AY 439 (779)
T PLN00150 360 PIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAY 439 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHh
Confidence 4434433343333333333333333344577899952 223332222 34433333333333344566778899888
Q ss_pred HHHHHHHHHHHHH
Q psy9213 230 TFVESSFTLTSVT 242 (378)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (378)
+++....++++.+
T Consensus 440 GiAV~~vM~iTT~ 452 (779)
T PLN00150 440 GIAVVGVMIITTC 452 (779)
T ss_pred hhheehhhHHHHH
Confidence 8877665555533
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=93.68 E-value=7 Score=37.61 Aligned_cols=174 Identities=15% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCCCCCChhhHHHHHHHHhH
Q psy9213 7 ILLESLLTAINCYNVKW-VTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN----IAHPMQNSNWDPGYVALSFYSGLF 81 (378)
Q Consensus 7 ~~~~~~~~~ln~~g~~~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 81 (378)
.+++.+...+-.+|++. ..|.+.++.=...+.++++.+-.+.. .+..+. +.+++..-. ++..+..++.+++|
T Consensus 149 ~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tL--pGA~~G~~f~l~PD~s~l~-~~~v~~~AlGQ~FF 225 (439)
T COG0733 149 LLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTL--PGAMEGLKFLFKPDFSKLT-DPKVWLAALGQAFF 225 (439)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHhcCCHHHcC-chhhHHHHHHHHHH
Confidence 45566666677778876 66677666665555555554443332 122222 333443321 25567788888888
Q ss_pred hc-cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhH------HHHHHHhhhhhhhh
Q psy9213 82 SY-SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTV------AVTFGAKILPMLTW 154 (378)
Q Consensus 82 ~~-~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~ 154 (378)
+. .|+....+++.=.++ +.|+|+.-......-..+-++.-+.+....-.-....++.+ .....++.. .+.
T Consensus 226 sLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp--~G~ 302 (439)
T COG0733 226 SLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP--LGT 302 (439)
T ss_pred HHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc--hhH
Confidence 87 677777777776654 57788777666665444433333222221111111112111 112222222 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC
Q psy9213 155 LMPLFVSCSTFGALNGAIFASSRLFFVGARNG 186 (378)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 186 (378)
++.+..+++..-++.++..+.-...-+.-+|+
T Consensus 303 ~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~ 334 (439)
T COG0733 303 LFGILFFLLLLFAALTSAISMLEVLVAALIDK 334 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443443
No 82
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=92.57 E-value=7.6 Score=38.83 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=56.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCCCCCChhhHHHHHHHHhHhc-cCh
Q psy9213 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN----IAHPMQNSNWDPGYVALSFYSGLFSY-SGW 86 (378)
Q Consensus 12 ~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 86 (378)
+....-.+|+|..+|+......+-.+.++++.+-++... +..+. +.++++.- .+..-+..++..++|+. .|+
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~--ga~~Gl~~~~~pd~~~l-~~~~vW~~A~~Q~ffsl~ig~ 266 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLP--GASEGLKFLFTPDWSKL-LDPKVWIAALGQVFFSLSIGF 266 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-E--EHHHHHHHHHSB-TTGT-TSHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCC--CCCCceEEEecCCcchh-hHHHHHHHHHHHHhhccCCCc
Confidence 344455689999998877666544444444444333321 11111 22333321 22445677888888888 677
Q ss_pred hhHHhhhhhhhCccccchhHHHhHHHHHHHHHHH
Q psy9213 87 NYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLL 120 (378)
Q Consensus 87 e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l 120 (378)
.....++.=.|+ +.+++|........-....++
T Consensus 267 G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 267 GIMITYGSYNKF-KNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp SHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEcCcCCC-CccccccceEEEcCchhhhHh
Confidence 777777766665 567888666555554444433
No 83
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.39 E-value=3.6 Score=40.47 Aligned_cols=231 Identities=13% Similarity=0.066 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCC----CCCCCCChhhHHHH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENI---AHP----MQNSNWDPGYVALS 75 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~ 75 (378)
..+++++++.+..+.-+|....|++- +=+.++=++.+...|+..... +++-+ ++. |--. .+..++. .
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~~F---GPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~yAi~fl~~-~~~~gf~-v 222 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGKLF---GPVMLLWFLALAVLGLINIID-DPEILRAINPYYAVHFLLE-EGFVGFF-V 222 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhh---ccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChHHHHHHHHh-CCceEEE-E
Confidence 46777888888888888887777653 333333344444555554432 22111 110 0000 0111111 1
Q ss_pred HHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhH
Q psy9213 76 FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWL 155 (378)
Q Consensus 76 ~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (378)
+...+.+.+|-|+. +|+==.--||.|-+|=. .+..=.++.++.-.+..-..+-.....+ +....-.|.-..
T Consensus 223 LGaVfLavTGaEAL--YADmGHfGr~pI~~AWf----~vv~P~L~LNY~GQGA~vL~~p~a~~np---FF~~~P~~aliP 293 (627)
T COG3158 223 LGAVFLAVTGAEAL--YADMGHFGRKPIRVAWF----FVVLPCLLLNYFGQGALLLSNPEAIGNP---FFLLAPDWALIP 293 (627)
T ss_pred eeeeeeeeccHHHH--HhhccccCCccHHHHHH----HHHHHHHHHHHccccceeccCcccccCc---HHHhChhhHHHH
Confidence 22345677888854 22222333444433322 2222122333332222211111111111 222222232221
Q ss_pred HHHH-HHHHHHHH--HHHHHHhhhhHHHHHHhcCCChhH-hhhhcCC-CC---CchhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 156 MPLF-VSCSTFGA--LNGAIFASSRLFFVGARNGHLPKA-IALINVK-RY---TPCPSLVFLCIITLLLMCIDDVFALIN 227 (378)
Q Consensus 156 ~~~~-~~~~~~~~--~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~k-~~---~P~~ai~~~~~~~~i~~~~~~~~~l~~ 227 (378)
+.+. .+...++| ..++.++-.|. .-|-|.+|+. ..+.+++ .| .|..-.++......+++.+.+-.++..
T Consensus 294 ~viLAT~ATVIASQAvISGaFSLtrQ---Ai~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAa 370 (627)
T COG3158 294 LVILATAATVIASQAVISGAFSLTRQ---AIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAA 370 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHH---HHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHH
Confidence 1111 11112221 23333333333 3488999952 2223322 22 455555555554555555667778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccC
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLKR 251 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~~ 251 (378)
.+++..-..+.++.+-....-+++
T Consensus 371 AYGiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 371 AYGIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred hhChheeehhHHHHHHHHHHHHHh
Confidence 888777666666655444333333
No 84
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=91.85 E-value=14 Score=36.43 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC-CChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh---hHHHHHH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNG-HLPKAIALINVKRYTPCPSLVFLCIITLLLMCID---DVFALIN 227 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~---~~~~l~~ 227 (378)
++.++....++..+....++..+++.++-.++.+| .=|+...|+- +++ ..++++..++..+ .++++..
T Consensus 390 ~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~-------W~~-~~~~~a~~ll~~ggl~~lq~~~i 461 (485)
T PF02028_consen 390 LSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIF-------WGL-IIGALAIVLLLIGGLDALQSASI 461 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHH-------HHH-HHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555556666666666777777778888888775 2233222221 222 2233344444444 4566777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLK 250 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~ 250 (378)
+.++...+...+.+.++++.-|+
T Consensus 462 i~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777878887776544
No 85
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=91.63 E-value=14 Score=36.00 Aligned_cols=29 Identities=10% Similarity=-0.196 Sum_probs=15.5
Q ss_pred hhhHHhhhhhhhCccccchhHHHhHHHHHH
Q psy9213 86 WNYLNFVTEELKNPYKNLPKAICVSMPLST 115 (378)
Q Consensus 86 ~e~~~~~a~E~knP~k~ip~ai~~~~~~~~ 115 (378)
.-.++.++...|+|+. -.++...+.....
T Consensus 224 ~~~~~DysRy~~~~~~-~~~~~~~~~~~~~ 252 (442)
T TIGR00800 224 ATNAPDFTRFGKSKKT-AIWGQFLALPGGF 252 (442)
T ss_pred HcCchhhhhhcCCccc-hHHHHHHHHHHHH
Confidence 3355666667777644 3455444444433
No 86
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=90.88 E-value=3.2 Score=39.85 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCC
Q psy9213 138 NTVAVTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGH 187 (378)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 187 (378)
+.....+..+..| +..-++.++++.+..++..+.+.+.+-.+ +||=.
T Consensus 278 ~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~---~~Di~ 325 (406)
T PF00474_consen 278 DLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSIF---SRDIY 325 (406)
T ss_dssp GGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCC
T ss_pred cccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhhh---hHHhh
Confidence 3344444444444 45556666677778888888888877764 56643
No 87
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=90.86 E-value=15 Score=35.04 Aligned_cols=155 Identities=10% Similarity=-0.044 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHh-ccChhh
Q psy9213 10 ESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFS-YSGWNY 88 (378)
Q Consensus 10 ~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~e~ 88 (378)
.++......+|.|...+++.+......+..+...+..... .+.... .++.+ + .++..++....-. ..+.-.
T Consensus 120 ~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~---~~~~~-~-~s~~~~~~~~~~~~~swa~~ 191 (386)
T TIGR02358 120 GILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSK---ADLSEL---WNRAG-D-MSFAVAVELVIAMPLSWLPL 191 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhh---cCCCC-C-ccHHHHHHHHHHHHHHHHHH
Confidence 3346667788999999999988777766665554432222 111111 11111 1 2233333221111 111122
Q ss_pred HHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy9213 89 LNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGAL 168 (378)
Q Consensus 89 ~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (378)
.+.++.-.|+|++ .-++...+......+..+.........+.+ ++...+.... .+.+..+...++..++.
T Consensus 192 ~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~------d~~~~~~~~g---~~~~~~~~~~l~~~~~n 261 (386)
T TIGR02358 192 IADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQT------DIISILAGAG---LGIPALLIILLSTVTTT 261 (386)
T ss_pred ccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHhcc---HHHHHHHHHHHhHHHHH
Confidence 4566666777655 446666555554443333333222222211 2222222221 12233344555666665
Q ss_pred HHHHHhhhhHHHHH
Q psy9213 169 NGAIFASSRLFFVG 182 (378)
Q Consensus 169 ~~~~~~~sR~l~~~ 182 (378)
....++++=-+..+
T Consensus 262 ~~N~ys~~l~l~~l 275 (386)
T TIGR02358 262 FMDIYSAAISTGNL 275 (386)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544444
No 88
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=90.81 E-value=16 Score=35.19 Aligned_cols=181 Identities=9% Similarity=-0.019 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCCC--CCChhh-----
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN----IAHPMQNS--NWDPGY----- 71 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~--~~~~~~----- 71 (378)
+..++++.++...+-+-|+|..+++.....=..-+.-++..+.-+......-|.- +...|.+. -+++.|
T Consensus 184 ~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~ 263 (452)
T COG1115 184 LVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQ 263 (452)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHH
Confidence 5677788888888999999998887665444333333222222111100000110 11122221 112221
Q ss_pred -HHHHHHHHhHhc---cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhh--cchhHHHHHH
Q psy9213 72 -VALSFYSGLFSY---SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELL--SSNTVAVTFG 145 (378)
Q Consensus 72 -~~~~~~~~~~~~---~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~--~~~~~~~~~~ 145 (378)
+..++.=..|+= .|....++.+.++++|.|.=-..+....+=..++...+.+.+...-.++... +.........
T Consensus 264 aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~ 343 (452)
T COG1115 264 AIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAF 343 (452)
T ss_pred HHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHH
Confidence 223333344433 4555566677788888774333333222224445555544444444443332 2223333334
Q ss_pred Hhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9213 146 AKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183 (378)
Q Consensus 146 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 183 (378)
...+| +...++.+.+++-.+++..++.+..-|-+.-+.
T Consensus 344 ~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 344 SSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555 567889999999999999999998888876664
No 89
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=90.33 E-value=14 Score=34.59 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=23.0
Q ss_pred hHHhhhhhhhCcccc----chhHHHhHHHHHHHHHHHH
Q psy9213 88 YLNFVTEELKNPYKN----LPKAICVSMPLSTIVYLLV 121 (378)
Q Consensus 88 ~~~~~a~E~knP~k~----ip~ai~~~~~~~~~~y~l~ 121 (378)
.....++++.+++++ -|+|+..+++.+.-.-++.
T Consensus 27 ~L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~ 64 (340)
T PF12794_consen 27 RLERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLL 64 (340)
T ss_pred HHHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 345667777777665 7888888887766554443
No 90
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=90.22 E-value=18 Score=34.76 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred hhCccccchhHHHhHHHHHHHHHHHHHHHHHh---cCCh--hhhh-----cchhHHHHHHHhhhh-hhhhHHHHHHHHHH
Q psy9213 96 LKNPYKNLPKAICVSMPLSTIVYLLVNVAYFV---VLSK--EELL-----SSNTVAVTFGAKILP-MLTWLMPLFVSCST 164 (378)
Q Consensus 96 ~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~---~~~~--~~l~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (378)
.||+ |+..|+...+.....+++++..+.-.. ..+. .+.. +.+.....+..+.+| ++.-++.++++.+.
T Consensus 229 ~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~ 307 (407)
T TIGR00813 229 AKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAV 307 (407)
T ss_pred cCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 3553 567788777766655555443222211 1111 1121 223333334444444 45566667777777
Q ss_pred HHHHHHHHHhhhhHH
Q psy9213 165 FGALNGAIFASSRLF 179 (378)
Q Consensus 165 ~~~~~~~~~~~sR~l 179 (378)
.++..+.+.+.+-.+
T Consensus 308 mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 308 MSTLSSQLNSASTVF 322 (407)
T ss_pred HHhhhhhHHHHHHHH
Confidence 777777777776664
No 91
>PRK10484 putative transporter; Provisional
Probab=90.20 E-value=21 Score=35.61 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=39.5
Q ss_pred hhCccccchhHHHhHHHHHHHHHHHHHH-HH--HhcCChhhhhcchhHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHH
Q psy9213 96 LKNPYKNLPKAICVSMPLSTIVYLLVNV-AY--FVVLSKEELLSSNTVAVTFGAKILP-MLTWLMPLFVSCSTFGALNGA 171 (378)
Q Consensus 96 ~knP~k~ip~ai~~~~~~~~~~y~l~~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (378)
.||+ |+.-|+...+.....+.+.+... .. ....| +++.+.+.....+..+..| ++.-++.++++.+..++..+.
T Consensus 270 ak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~ 347 (523)
T PRK10484 270 AKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYG-DGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGF 347 (523)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4554 45556666655443333332211 11 11112 2132333333344444444 344556666667777777777
Q ss_pred HHhhhhHH
Q psy9213 172 IFASSRLF 179 (378)
Q Consensus 172 ~~~~sR~l 179 (378)
+.+.|-.+
T Consensus 348 l~s~st~~ 355 (523)
T PRK10484 348 LNSASTLF 355 (523)
T ss_pred HHHHHHHH
Confidence 77776654
No 92
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.51 E-value=26 Score=34.21 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFAS 175 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (378)
...++.++.+.+.+++..+...++
T Consensus 308 a~~lFaiGL~aag~sS~i~~~~a~ 331 (439)
T PRK00701 308 AATLFGIALLASGLSSTVVGTLAG 331 (439)
T ss_pred HHHHHHHHHHHhHhHHHhHHHHHH
Confidence 445666666666566555544433
No 93
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=85.24 E-value=41 Score=33.25 Aligned_cols=36 Identities=6% Similarity=0.191 Sum_probs=22.9
Q ss_pred HHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9213 144 FGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLF 179 (378)
Q Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 179 (378)
+.....| +..-++.++++.+..++..+.+.+.+-.+
T Consensus 310 ~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 310 LSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 34556666777777888888777777664
No 94
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=82.38 E-value=17 Score=30.49 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=9.7
Q ss_pred CCCCchh-----HHHHHHHHHHH
Q psy9213 198 KRYTPCP-----SLVFLCIITLL 215 (378)
Q Consensus 198 k~~~P~~-----ai~~~~~~~~i 215 (378)
|+.-|+. ++++.+.++++
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLl 111 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALL 111 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHH
Confidence 5556664 44555555544
No 95
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=79.77 E-value=67 Score=31.85 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9213 139 TVAVTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLF 179 (378)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 179 (378)
.....+....++ +..-++...++.+..++..+.+.+.+-.+
T Consensus 312 ~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 312 LVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334444555554 45555556666666666666666665554
No 96
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=79.53 E-value=15 Score=31.75 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhheeecC
Q psy9213 294 ILSGIPVYMVFVYWKDK 310 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~~~ 310 (378)
+++|++.+...++.+||
T Consensus 184 iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555444444444
No 97
>PRK12488 acetate permease; Provisional
Probab=78.56 E-value=78 Score=31.89 Aligned_cols=34 Identities=6% Similarity=-0.118 Sum_probs=22.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 16 INCYNVKWVTRLQDVFTATKMLALGGIVIAGMWF 49 (378)
Q Consensus 16 ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 49 (378)
.-.-|.|...+.+.+=.++.++..++..+..+..
T Consensus 195 t~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~~ 228 (549)
T PRK12488 195 VTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLKH 228 (549)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356888888888777777766665554444433
No 98
>COG4025 Predicted membrane protein [Function unknown]
Probab=78.07 E-value=29 Score=30.22 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHhcCCCh
Q psy9213 173 FASSRLFFVGARNGHLP 189 (378)
Q Consensus 173 ~~~sR~l~~~a~dg~lP 189 (378)
.+.-|-...++||+.+|
T Consensus 54 ~~~ve~v~e~~re~~i~ 70 (284)
T COG4025 54 ASKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 34568889999999987
No 99
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=72.83 E-value=6.3 Score=28.21 Aligned_cols=7 Identities=57% Similarity=1.089 Sum_probs=3.6
Q ss_pred ccccccc
Q psy9213 370 FLNPMLN 376 (378)
Q Consensus 370 ~~~~~~~ 376 (378)
|.|||+.
T Consensus 74 ~~~p~~d 80 (81)
T PF00558_consen 74 FDNPMFD 80 (81)
T ss_dssp CSSCCC-
T ss_pred CCCcccc
Confidence 5566654
No 100
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=71.64 E-value=50 Score=31.90 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHH
Q psy9213 163 STFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVF 223 (378)
Q Consensus 163 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~ 223 (378)
+.++++.+-.++.|+.+.++=-|+.=|+.|--.. +++++++.+++-.+.++.
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g---------Lilsai~nil~Gfs~s~~ 118 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG---------LILSAIVNILFGFSPSLF 118 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH---------HHHHHHHHHHHhhhhHHH
Confidence 4556677778889999988888877666554443 666666666655554433
No 101
>PRK09950 putative transporter; Provisional
Probab=65.79 E-value=1.5e+02 Score=29.56 Aligned_cols=94 Identities=10% Similarity=-0.057 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcC-CCCCchhHHHHHHHHHHHHHhhh----hHHHHH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINV-KRYTPCPSLVFLCIITLLLMCID----DVFALI 226 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~-k~~~P~~ai~~~~~~~~i~~~~~----~~~~l~ 226 (378)
++.++....++..+....++..+++-++-.++.+|.-++ .+| |...=.+++.+.. ++..++..+ .+++..
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~~~~ri~W~i~~g~-ia~~Ll~~gG~l~~lQ~~~ 474 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPDRGLRLFWCVVITL-IPLSILFTGASLDTMKTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCCcchhHHHHHHHHH-HHHHHHHhCCcHHHHHHHH
Confidence 345555555556666666677777777777776654221 111 1122233333333 333333333 345566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q psy9213 227 NYATFVESSFTLTSVTGLLWLRLK 250 (378)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~r~~ 250 (378)
.+.++...+...+.+.+.++.-++
T Consensus 475 ii~alP~~~i~~l~~~s~~k~l~~ 498 (506)
T PRK09950 475 VLTALPFLVILLIKVYGFIRWLKQ 498 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777777777777777665443
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=64.79 E-value=1.8e+02 Score=30.12 Aligned_cols=93 Identities=6% Similarity=-0.173 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh---hHHHHHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID---DVFALINYA 229 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~---~~~~l~~~~ 229 (378)
+.++....++..+....++.-+++-++-.++..|.-|+. + .|+...=.+++++.. ++..++..+ .+++.+-+.
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~-pp~~~RifW~v~ig~-la~~LL~~GGL~aLQt~sii~ 483 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--D-APNWLRVFWSVAIGL-LTLGMLMTNGISALQNTTVIM 483 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--C-CCcceeeHHHHHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence 344444444444555556666677777777766542210 0 112222334444333 344444444 455666667
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q psy9213 230 TFVESSFTLTSVTGLLWLRL 249 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~r~ 249 (378)
++.+.+..++.+.++++.-+
T Consensus 484 alPf~~I~ll~~~sl~k~l~ 503 (679)
T PRK09928 484 GLPFSFVIFFVMAGLYKSLK 503 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776543
No 103
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=63.99 E-value=66 Score=31.21 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9213 9 LESLLTAINCYNVKWVTRLQDVFTATKMLALGGI 42 (378)
Q Consensus 9 ~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~ 42 (378)
+.++.....+.|.+...+++.+...+..+..+.+
T Consensus 144 ~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 144 FWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhhe
Confidence 3344555677788888777776666554443333
No 104
>KOG3660|consensus
Probab=63.89 E-value=1.8e+02 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=35.0
Q ss_pred hHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9213 2 EYTLFILL-ESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWF 49 (378)
Q Consensus 2 ~~~~~~~~-~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 49 (378)
+..+++.+ .+++.++-.+|+|.+||+..+.+.+--+.++++.+-|+..
T Consensus 215 ~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL 263 (629)
T KOG3660|consen 215 PLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTL 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccC
Confidence 44455544 4446667788999999999888888777777777776654
No 105
>PRK09395 actP acetate permease; Provisional
Probab=56.80 E-value=2.2e+02 Score=28.65 Aligned_cols=32 Identities=6% Similarity=-0.120 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9213 13 LTAINCYNVKWVTRLQDVFTATKMLALGGIVI 44 (378)
Q Consensus 13 ~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i 44 (378)
....-.-|.|...+.+.+=.++.++..++..+
T Consensus 194 ~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~ 225 (551)
T PRK09395 194 MVYVLFGGMLATTWVQIIKAVLLLSGATFMAF 225 (551)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344558888887777766666665554444
No 106
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=55.84 E-value=92 Score=23.94 Aligned_cols=13 Identities=15% Similarity=0.145 Sum_probs=5.3
Q ss_pred CCchhHHHHHHHH
Q psy9213 200 YTPCPSLVFLCII 212 (378)
Q Consensus 200 ~~P~~ai~~~~~~ 212 (378)
+....-+++..+.
T Consensus 6 ~~ek~tLlLalia 18 (117)
T PF07226_consen 6 RSEKKTLLLALIA 18 (117)
T ss_pred CCchhhHHHHHHH
Confidence 3344444444333
No 107
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=54.95 E-value=94 Score=23.79 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q psy9213 234 SSFTLTSVTGLLW 246 (378)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (378)
.+...+..++...
T Consensus 55 ~l~~~i~~lal~v 67 (120)
T PF05656_consen 55 ILLLFIPSLALTV 67 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 3343444444443
No 108
>PTZ00206 amino acid transporter; Provisional
Probab=54.92 E-value=2.2e+02 Score=28.00 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhh
Q psy9213 144 FGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIA 193 (378)
Q Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~ 193 (378)
+.+..+| +..+++.+..++.++++..+++...+..+...-++...|+++.
T Consensus 126 la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 126 VARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 3344444 4668888899999999999999999988876655544555554
No 109
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=54.02 E-value=1.4e+02 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.152 Sum_probs=13.6
Q ss_pred CCCCchhHHHHHHHHHHHHHh
Q psy9213 198 KRYTPCPSLVFLCIITLLLMC 218 (378)
Q Consensus 198 k~~~P~~ai~~~~~~~~i~~~ 218 (378)
..+.|++.+.+.+++.++.-+
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl 34 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGL 34 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHH
Confidence 455677777777777666443
No 110
>PF14256 YwiC: YwiC-like protein
Probab=52.37 E-value=1.2e+02 Score=24.04 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q psy9213 230 TFVESSFTLTSVTGLLWLRLKR 251 (378)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~r~~~ 251 (378)
.+..+..|....-.....|.|+
T Consensus 31 ~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 31 LLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3444556666655555555554
No 111
>KOG2466|consensus
Probab=52.22 E-value=2.4e+02 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhh
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIAL 194 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~ 194 (378)
...++..+..++++++-.+.-.. --++.-.+++||.+.-
T Consensus 343 gvFfi~~~f~laql~~NISan~v----aagnDl~~L~PkyinI 381 (572)
T KOG2466|consen 343 GVFFIGFGFALAQLGTNISANSV----AAGNDLSALLPKYINI 381 (572)
T ss_pred hhhHHHHHHHHHHHhcchhcccc----ccchhhHhhCcceEEe
Confidence 34566677777777765543322 2234455677876654
No 112
>PRK11056 hypothetical protein; Provisional
Probab=51.70 E-value=1.1e+02 Score=23.63 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.7
Q ss_pred Cccchh
Q psy9213 257 PIKVSI 262 (378)
Q Consensus 257 ~~~~~~ 262 (378)
|-..|.
T Consensus 61 ~eg~P~ 66 (120)
T PRK11056 61 PEGLPG 66 (120)
T ss_pred CCCChH
Confidence 444444
No 113
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=50.94 E-value=56 Score=21.64 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=28.7
Q ss_pred HHHHHHHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHH
Q psy9213 73 ALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLL 120 (378)
Q Consensus 73 ~~~~~~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l 120 (378)
+..+-...|+|.|...-.+.-+|.++.+ |...+.+-++.+++++.
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHH
Confidence 3455667899999999888888876432 44444444444444444
No 114
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=46.40 E-value=1.8e+02 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=15.6
Q ss_pred ChhHhhhhcCCCCCchhHHHHHH
Q psy9213 188 LPKAIALINVKRYTPCPSLVFLC 210 (378)
Q Consensus 188 lP~~f~~~~~k~~~P~~ai~~~~ 210 (378)
+|.+++|+|.-.+.-..++.+..
T Consensus 30 fPD~YtRLHAATKa~TLGv~LIL 52 (197)
T PRK12585 30 LPDVYTRTHAAGISNTFGVSLLL 52 (197)
T ss_pred cCcHHHHhhccccchhhhHHHHH
Confidence 59999999966555555544443
No 115
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=45.37 E-value=1.4e+02 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhh
Q psy9213 233 ESSFTLTSVTGLLWLR 248 (378)
Q Consensus 233 ~~~~~~~~~~~~~~~r 248 (378)
..+..++..+++++++
T Consensus 16 G~~f~ligaIGLlRfP 31 (197)
T PRK12585 16 GGLLSILAAIGVIRLP 31 (197)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3333344455555543
No 116
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=44.96 E-value=1.6e+02 Score=28.19 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=4.9
Q ss_pred HhhhhHHHHHH
Q psy9213 173 FASSRLFFVGA 183 (378)
Q Consensus 173 ~~~sR~l~~~a 183 (378)
.+..|+...-|
T Consensus 71 ~g~~~T~l~~A 81 (386)
T PF05975_consen 71 IGRLRTFLEEA 81 (386)
T ss_pred hCcchhhhcCC
Confidence 34445544433
No 117
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=41.77 E-value=1.7e+02 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=12.3
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q psy9213 198 KRYTPCPSLVFLCIITLLLM 217 (378)
Q Consensus 198 k~~~P~~ai~~~~~~~~i~~ 217 (378)
|.+.+....+...++..+..
T Consensus 27 k~~~~~~~~~~~~~v~i~~~ 46 (146)
T PF14667_consen 27 KTKWPFIITLIGAIVNIILN 46 (146)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 66666666666666655543
No 118
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=41.45 E-value=3.9e+02 Score=26.95 Aligned_cols=29 Identities=7% Similarity=-0.093 Sum_probs=18.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9213 16 INCYNVKWVTRLQDVFTATKMLALGGIVI 44 (378)
Q Consensus 16 ln~~g~~~~~~~~~~~~~~~i~~~~~~~i 44 (378)
.-+-|.|...+.+.+=.++.++..++..+
T Consensus 195 t~~GGm~av~~td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 195 VLFGGMLATTWVQIIKAVLLLFGATFMAF 223 (549)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558888888777777666665554444
No 119
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=40.11 E-value=2.7e+02 Score=24.86 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhH-----HHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDV-----FALIN 227 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~-----~~l~~ 227 (378)
...+.....+..+........-+.|.+. |.|.-.+.+.+.+ +.+.|.+.++...+...+....+.. +.+..
T Consensus 158 ~~~~P~~~~i~~~~~~~~~~~l~~~il~---r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~ 233 (290)
T PF09991_consen 158 KRLFPALLIISALLMSLINYYLARRILR---RLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGL 233 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3344444444445555555555566653 4443323333344 6788999887776655544442211 22222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccC
Q psy9213 228 YATFVESSFTLTSVTGLLWLRLKR 251 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~r~~~ 251 (378)
-........|.+.-++...+.-++
T Consensus 234 Nl~~v~~~l~~~qGla~~~~~~~~ 257 (290)
T PF09991_consen 234 NLLIVLSFLFFIQGLAVIHFFLKR 257 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344456666667766655444
No 120
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=38.21 E-value=1.6e+02 Score=25.20 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=9.7
Q ss_pred hhhhcCCCCCchhHHHHH
Q psy9213 192 IALINVKRYTPCPSLVFL 209 (378)
Q Consensus 192 f~~~~~k~~~P~~ai~~~ 209 (378)
+.|.-+|.-+++--+.+-
T Consensus 18 l~~~~~~~~t~hE~~sL~ 35 (206)
T PF09874_consen 18 LRKLVKRDLTEHELLSLK 35 (206)
T ss_pred HHHHhhcCCcHHHHHHHH
Confidence 355554666666554443
No 121
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=37.20 E-value=63 Score=25.12 Aligned_cols=25 Identities=4% Similarity=-0.065 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhheeec
Q psy9213 285 WEVGIGLLMILSGIPVYMVFVYWKD 309 (378)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (378)
...-++++.++++-+.++.+.++++
T Consensus 67 ~A~nwavgsF~l~s~~~we~Cr~~r 91 (118)
T PF12597_consen 67 KAANWAVGSFFLGSLGSWEYCRYNR 91 (118)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445566665566666665554433
No 122
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=34.30 E-value=4.6e+02 Score=25.75 Aligned_cols=92 Identities=10% Similarity=-0.084 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh----hHHHHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID----DVFALINY 228 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~----~~~~l~~~ 228 (378)
+.++....++..+....++..+++-++-.++.++.-|+. +- ||...=.+++.+..+ +..++..+ .++++..+
T Consensus 355 ~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--ep-~~~~ri~W~v~ig~~-a~~ll~~gG~l~~lQ~~~ii 430 (453)
T TIGR00842 355 GTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--EP-PKWVRVFWAVAIGLI-ALVLLFSGGSLAALQTTAII 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--CC-CcccchHHHHHHHHH-HHHHHHhcCcHHHHHHHHHH
Confidence 344444455555555556666666666666443322110 01 122223344444333 33343433 44556666
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9213 229 ATFVESSFTLTSVTGLLWLR 248 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r 248 (378)
.++...+...+.+.++++.-
T Consensus 431 ~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 431 AALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766544
No 123
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=33.04 E-value=66 Score=25.91 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=4.9
Q ss_pred Ccchhhhhhhh
Q psy9213 311 PRWLNNIAVFI 321 (378)
Q Consensus 311 ~~~~~~~~~~~ 321 (378)
.++.+.....+
T Consensus 48 ~~yrr~Al~~L 58 (146)
T PF14316_consen 48 NRYRREALREL 58 (146)
T ss_pred cHHHHHHHHHH
Confidence 33444444444
No 124
>PTZ00370 STEVOR; Provisional
Probab=31.53 E-value=57 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhheeecCCcchhh
Q psy9213 294 ILSGIPVYMVFVYWKDKPRWLNN 316 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~ 316 (378)
.++.+++| +|.++|||..|.-+
T Consensus 268 ~vvliilY-iwlyrrRK~swkhe 289 (296)
T PTZ00370 268 AVVLIILY-IWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHH-HHHHHhhcchhHHH
Confidence 33333444 34445555555544
No 125
>PF14007 YtpI: YtpI-like protein
Probab=30.51 E-value=1.8e+02 Score=21.35 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=16.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhheee
Q psy9213 281 YVKPWEVGIGLLMILSGIPVYMVFVYWK 308 (378)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (378)
..+....+++.+.+++|+.-.+...+.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r~y 81 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIRAY 81 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444566677777777776655544433
No 126
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=30.08 E-value=61 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=22.8
Q ss_pred hhhhCcc-ccchhHHHhHHHHHHHHHHHHHH
Q psy9213 94 EELKNPY-KNLPKAICVSMPLSTIVYLLVNV 123 (378)
Q Consensus 94 ~E~knP~-k~ip~ai~~~~~~~~~~y~l~~~ 123 (378)
|-..||| |.+||+++.+.+...++-+....
T Consensus 205 EGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 205 EGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred ecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 4457887 88999999999887776665543
No 127
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.91 E-value=17 Score=32.52 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhcCCCCCchhHHHHHHHHH
Q psy9213 194 LINVKRYTPCPSLVFLCIIT 213 (378)
Q Consensus 194 ~~~~k~~~P~~ai~~~~~~~ 213 (378)
+.+||--.|...+.+.+.+-
T Consensus 13 ~r~pr~p~~~a~l~~~~lll 32 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLLL 32 (381)
T ss_dssp --------------------
T ss_pred CCCCCCCCcchhHHHHHHHH
Confidence 34566667777776665543
No 128
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=29.57 E-value=3.4e+02 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=15.2
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhh
Q psy9213 198 KRYTPCPSLVFLCIITLLLMCIDD 221 (378)
Q Consensus 198 k~~~P~~ai~~~~~~~~i~~~~~~ 221 (378)
..+.+...+...++++.+...+++
T Consensus 73 ~~~~~~~~~~~a~lv~al~fafS~ 96 (178)
T PF11028_consen 73 PSTAQTIAILGAGLVGALAFAFSD 96 (178)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhH
Confidence 455666667777777776665543
No 129
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=29.32 E-value=2.4e+02 Score=20.99 Aligned_cols=20 Identities=5% Similarity=0.130 Sum_probs=13.5
Q ss_pred ChhHhhhhcCCCCCchhHHH
Q psy9213 188 LPKAIALINVKRYTPCPSLV 207 (378)
Q Consensus 188 lP~~f~~~~~k~~~P~~ai~ 207 (378)
+|+.++|.|.-.+.-..+..
T Consensus 20 ~pD~y~RlHAatk~~tlG~~ 39 (97)
T TIGR01300 20 FPDVYTRLHAATKGTTLGTI 39 (97)
T ss_pred CCcHHHHhhhhhhhHHHHHH
Confidence 49999999965554444433
No 130
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=27.56 E-value=5.3e+02 Score=25.25 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=8.6
Q ss_pred CCchhHHHHHHHHHHHH
Q psy9213 200 YTPCPSLVFLCIITLLL 216 (378)
Q Consensus 200 ~~P~~ai~~~~~~~~i~ 216 (378)
+.|.+..++....+.++
T Consensus 83 k~pk~i~llap~vt~l~ 99 (443)
T PRK12489 83 RNPKYITILAPFVTYTL 99 (443)
T ss_pred cChhHHHHHHHHHHHHH
Confidence 34666665444444443
No 131
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.83 E-value=73 Score=24.15 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.8
Q ss_pred hhhhhhhhc
Q psy9213 355 ELDVRQTIH 363 (378)
Q Consensus 355 ~~~~~~~~~ 363 (378)
|+-.|+..+
T Consensus 68 Ee~AR~~Lg 76 (105)
T PRK00888 68 EERARNELG 76 (105)
T ss_pred HHHHHHHcC
Confidence 333444444
No 132
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.80 E-value=54 Score=30.08 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhheeecC
Q psy9213 292 LMILSGIPVYMVFVYWKDK 310 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (378)
+++++.+++|+++++||+|
T Consensus 267 iIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445566677777766644
No 133
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.29 E-value=83 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhheeecCCcch
Q psy9213 294 ILSGIPVYMVFVYWKDKPRWL 314 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~ 314 (378)
.++.+++|. |.++|||..|.
T Consensus 272 ~vvliiLYi-WlyrrRK~swk 291 (295)
T TIGR01478 272 TVVLIILYI-WLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHH-HHHHhhccccc
Confidence 333444444 34444555543
No 134
>PF14002 YniB: YniB-like protein
Probab=24.28 E-value=66 Score=26.33 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.7
Q ss_pred hhhhhhhhhhcccCCccc
Q psy9213 353 LIELDVRQTIHVCPGGLF 370 (378)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~ 370 (378)
.-+++.++++++-.-+.|
T Consensus 123 ~treqlE~~i~vPrhtif 140 (166)
T PF14002_consen 123 RTREQLEERIVVPRHTIF 140 (166)
T ss_pred ccHHHHHhcccCCCcchH
Confidence 344556666666554444
No 135
>PHA02844 putative transmembrane protein; Provisional
Probab=24.09 E-value=1.2e+02 Score=21.30 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=17.3
Q ss_pred HhhhhhhhCccccchhHHHhHHHHHHHHHHH
Q psy9213 90 NFVTEELKNPYKNLPKAICVSMPLSTIVYLL 120 (378)
Q Consensus 90 ~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l 120 (378)
+.+++|.++|.++..++-.+..++..++.++
T Consensus 29 sVLtd~~~s~~~~~~~~~~~~~~ii~i~~v~ 59 (75)
T PHA02844 29 SVLSDDYDGVNKNNVCSSSTKIWILTIIFVV 59 (75)
T ss_pred HHHcCCCCCccccccCChhHHHHHHHHHHHH
Confidence 4566776777775555555555554443333
No 136
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.89 E-value=1e+02 Score=25.50 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=22.3
Q ss_pred hhhhCcc-ccchhHHHhHHHHHHHHHHHHHH
Q psy9213 94 EELKNPY-KNLPKAICVSMPLSTIVYLLVNV 123 (378)
Q Consensus 94 ~E~knP~-k~ip~ai~~~~~~~~~~y~l~~~ 123 (378)
|-.+||| |.+||+++.+.+...+.-++..+
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4567887 88999999888877666555443
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.44 E-value=2.2e+02 Score=19.57 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q psy9213 288 GIGLLMILSGIPVYMVFVYW 307 (378)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~ 307 (378)
.+.+.+.++|+++|.++.+.
T Consensus 7 Li~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34566777888888776544
No 138
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.24 E-value=2.6e+02 Score=19.80 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=4.4
Q ss_pred HHHhhhheeec
Q psy9213 299 PVYMVFVYWKD 309 (378)
Q Consensus 299 ~~~~~~~~~~~ 309 (378)
.+|.+.-|+.|
T Consensus 19 PiWL~LHY~sk 29 (75)
T PRK09458 19 PIWLWLHYRSK 29 (75)
T ss_pred HHHHHHhhccc
Confidence 34444433333
No 139
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=21.95 E-value=3e+02 Score=19.55 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=3.6
Q ss_pred HHhhhhccC
Q psy9213 243 GLLWLRLKR 251 (378)
Q Consensus 243 ~~~~~r~~~ 251 (378)
...+.+|++
T Consensus 21 ~i~~v~k~k 29 (87)
T PF03083_consen 21 QIRQVIKTK 29 (87)
T ss_pred HHHHHHhCC
Confidence 333344443
No 140
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=21.82 E-value=8.1e+02 Score=24.47 Aligned_cols=93 Identities=10% Similarity=-0.129 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcC-CCCCchhHHHHHHHHHHHHHhhh---hHHHHHHH
Q psy9213 153 TWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINV-KRYTPCPSLVFLCIITLLLMCID---DVFALINY 228 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~-k~~~P~~ai~~~~~~~~i~~~~~---~~~~l~~~ 228 (378)
+.++....++..+....++..+++-++-.++.+|.-++. || +...=.+++++.. ++..++..+ .+++...+
T Consensus 404 ~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~----~p~~~~ri~W~v~ig~-ia~~Ll~~GGl~~lQt~sii 478 (504)
T PRK03356 404 STATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGE----EPPLLVRIGWSILVGI-IGIVLLALGGLKPIQTAIIA 478 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC----CCCcchhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 344444445555555666666777777777776542210 11 2222233433333 333444433 45566667
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q psy9213 229 ATFVESSFTLTSVTGLLWLRLK 250 (378)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~r~~ 250 (378)
.++...+...+.+.++++.-++
T Consensus 479 ~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 479 GGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777765544
No 141
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=21.56 E-value=8.4e+02 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLF 179 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l 179 (378)
..-++.++++.+..++..+.+.+.+-++
T Consensus 367 l~gl~~ag~~aA~mSt~~s~l~a~st~~ 394 (552)
T TIGR03648 367 VIGLVAAGGLAAALSTAAGLLLVISSAI 394 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666667777777777666553
No 142
>PF14150 YesK: YesK-like protein
Probab=21.31 E-value=3.2e+02 Score=19.64 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=5.4
Q ss_pred hhhccCCCCC
Q psy9213 246 WLRLKRPDLK 255 (378)
Q Consensus 246 ~~r~~~~~~~ 255 (378)
.+|+|.|+++
T Consensus 18 ~lr~r~p~k~ 27 (81)
T PF14150_consen 18 LLRKRFPKKQ 27 (81)
T ss_pred HHHHhCCCcc
Confidence 4566665543
No 143
>PTZ00046 rifin; Provisional
Probab=20.76 E-value=89 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.590 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhheeecCC
Q psy9213 292 LMILSGIPVYMVFVYWKDKP 311 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ 311 (378)
+++++.+++|++.++||||+
T Consensus 326 VIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 33455566787777766543
No 144
>PRK11281 hypothetical protein; Provisional
Probab=20.76 E-value=1.2e+03 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHhhhhhhhCcc----ccchhHHHhHHHHHHHHHHH
Q psy9213 89 LNFVTEELKNPY----KNLPKAICVSMPLSTIVYLL 120 (378)
Q Consensus 89 ~~~~a~E~knP~----k~ip~ai~~~~~~~~~~y~l 120 (378)
....++++.+++ ..-|+|+.++++.+.-..++
T Consensus 524 l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~ 559 (1113)
T PRK11281 524 LQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLI 559 (1113)
T ss_pred HHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHH
Confidence 345566666555 45688888888776554444
No 145
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.75 E-value=6.2e+02 Score=25.23 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=13.9
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhhhh
Q psy9213 336 ARNMMGKLRCTLMGRCRLIELDVRQTI 362 (378)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (378)
..+..+..+.+..|.-.++-++..+|+
T Consensus 321 l~~aLe~l~~~nfG~L~~~I~~LYkRL 347 (527)
T COG1955 321 LVEALEALDRHNFGILTEDIRRLYKRL 347 (527)
T ss_pred HHHHHHHhhhhccccccHHHHHHHHHH
Confidence 334445555555555555555555553
No 146
>KOG4303|consensus
Probab=20.22 E-value=3.2e+02 Score=25.83 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHhccChhhHHhhhhhhhC
Q psy9213 19 YNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKN 98 (378)
Q Consensus 19 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~a~E~kn 98 (378)
...|..+++..+.++-+++.=++++.-.+.....-..+......+ ...+-..+.+..|+|+.--..+++-+.+||
T Consensus 256 k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsid-----i~~fPisvG~iVFsYTSqIFLP~LEGNM~~ 330 (524)
T KOG4303|consen 256 KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSID-----INTFPISVGMIVFSYTSQIFLPNLEGNMKN 330 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEE-----cccCceEEEEEEEeeeceeeccccccccCC
Confidence 467888999999999998877766665554432211111111111 111223334567888877788899999999
Q ss_pred ccccchhHHHhHHHHHHHHHHHHH
Q psy9213 99 PYKNLPKAICVSMPLSTIVYLLVN 122 (378)
Q Consensus 99 P~k~ip~ai~~~~~~~~~~y~l~~ 122 (378)
|++ +-..+.++-+...++=.+..
T Consensus 331 ps~-Fn~Ml~WsHIAAaVfK~~Fg 353 (524)
T KOG4303|consen 331 PSQ-FNVMLKWSHIAAAVFKVVFG 353 (524)
T ss_pred hhH-heeeeehHHHHHHHHHHHHH
Confidence 976 55777778777777666643
No 147
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=20.20 E-value=9.4e+02 Score=24.61 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHhHhccChhhHHhhhhhhhCcc--ccchhHHHhHHHHHHHHHHHHH
Q psy9213 74 LSFYSGLFSYSGWNYLNFVTEELKNPY--KNLPKAICVSMPLSTIVYLLVN 122 (378)
Q Consensus 74 ~~~~~~~~~~~G~e~~~~~a~E~knP~--k~ip~ai~~~~~~~~~~y~l~~ 122 (378)
..+....+.+...+.+..+..|.|--. |.-||.+..+-++.+++-.+.+
T Consensus 435 a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~ 485 (624)
T PF03169_consen 435 ANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVA 485 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 344555667777777788888877332 4445555555444444433333
No 148
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=20.14 E-value=4.8e+02 Score=21.20 Aligned_cols=30 Identities=30% Similarity=0.627 Sum_probs=16.2
Q ss_pred CCCccchh-HHHHHHHHHHHHHHHhcCcccc
Q psy9213 255 KRPIKVSI-ILPITFFIIAAFLVTLPMYVKP 284 (378)
Q Consensus 255 ~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 284 (378)
+||-.... .+|.+++.........|....+
T Consensus 26 ~rP~~~kkIIlPplfmstG~lmf~~P~~~~~ 56 (148)
T PF07301_consen 26 KRPVNGKKIILPPLFMSTGFLMFVFPFFRPP 56 (148)
T ss_pred cCCCCcchHHHhHHHHHHHHHHHhCccccch
Confidence 35543333 5777776655555555544433
No 149
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.06 E-value=93 Score=29.12 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhheeecCC
Q psy9213 292 LMILSGIPVYMVFVYWKDKP 311 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ 311 (378)
+++++.+++|++.++||||+
T Consensus 321 vIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 33445566787777766543
Done!