Query psy9213
Match_columns 378
No_of_seqs 192 out of 2054
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 21:49:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 100.0 1.5E-37 5.3E-42 306.2 27.5 279 2-282 130-433 (511)
2 3l1l_A Arginine/agmatine antip 100.0 6.8E-37 2.3E-41 296.4 29.7 298 3-309 126-432 (445)
3 3gia_A Uncharacterized protein 100.0 5.3E-35 1.8E-39 283.0 28.3 291 3-307 126-422 (444)
4 2jln_A MHP1; hydantoin, transp 98.2 0.0012 4E-08 64.1 27.8 95 4-101 144-239 (501)
5 2a65_A Leutaa, Na(+):neurotran 96.2 0.54 1.9E-05 45.3 19.8 179 7-187 173-371 (519)
6 3dh4_A Sodium/glucose cotransp 94.8 2.2 7.4E-05 41.3 18.6 46 138-187 307-353 (530)
7 2xq2_A Sodium/glucose cotransp 93.9 5.2 0.00018 39.2 21.9 33 147-179 344-377 (593)
8 4ain_A Glycine betaine transpo 49.8 1.8E+02 0.0062 27.8 12.1 29 221-249 477-505 (539)
9 2wsw_A BCCT family betaine/car 33.0 3.2E+02 0.011 25.9 22.1 89 154-250 410-505 (509)
10 3eff_K Voltage-gated potassium 21.9 2.5E+02 0.0086 20.9 6.9 13 288-300 69-81 (139)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.5e-37 Score=306.16 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=215.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCCC---CCCCCCCChhhHHHHHH
Q psy9213 2 EYTLFILLESLLTAINCYNVKWVTRLQDVFTATKML-ALGGIVIAGMWFLAMGNTENIAH---PMQNSNWDPGYVALSFY 77 (378)
Q Consensus 2 ~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~-~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (378)
.++++++++++.+.+|++|+|.+++++.+.++++++ .++++++.++.....+++.++.. ++.+. .+..+.+.++.
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 208 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD-FSKVGTLVVFV 208 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC-TTSTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC-cccchHHHHHH
Confidence 356788899999999999999999999999888654 46666666666544443322211 11111 11122345567
Q ss_pred HHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHH--hhh----hh
Q psy9213 78 SGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGA--KIL----PM 151 (378)
Q Consensus 78 ~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~----~~ 151 (378)
..+|+|.|+|++++++||+|||+|++|||+..++.++.++|++..++.....|+++...+++....+.. ... ++
T Consensus 209 ~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 288 (511)
T 4djk_A 209 AFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEW 288 (511)
T ss_dssp HHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTT
T ss_pred HHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchH
Confidence 789999999999999999999999999999999999999999999999999998887655444333221 122 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHH-HHhhh--------hH
Q psy9213 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLL-LMCID--------DV 222 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i-~~~~~--------~~ 222 (378)
...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+| |+++|+++++++..+..+ +...+ .+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f 367 (511)
T 4djk_A 289 TVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSF 367 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 567888899999999999999999999999999999999999999 689999999998554333 33332 26
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhcCcc
Q psy9213 223 FALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLVTLPMYV 282 (378)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~ 282 (378)
+.+.++.++..+++|.+.+++++++|+|+++.+||||.|. .+++++++.+++.++...++
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 433 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLP 433 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeC
Confidence 6799999999999999999999999999988889999982 36677777777776665444
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=6.8e-37 Score=296.42 Aligned_cols=298 Identities=17% Similarity=0.205 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CChhhHHHHHHHHhH
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN-WDPGYVALSFYSGLF 81 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (378)
++++++++++.+.+|++|+|..++++.+++.++++.++++++.++... +++++.+++++.+ .++.++..++..++|
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF---RGETYMAAWNVSGLGTFGAIQSTLNVTLW 202 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC---CCCCCCCC-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChhhcccccCccCCccHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999998888777655432 3344444444322 235678899999999
Q ss_pred hccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhh-hhhhhHHHHHH
Q psy9213 82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKIL-PMLTWLMPLFV 160 (378)
Q Consensus 82 ~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (378)
+|.|+|.+++++||+|||+|++|||+..+..+++++|++..+......|++++.+++.+.....++.. ++...++.+..
T Consensus 203 af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 282 (445)
T 3l1l_A 203 SFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCA 282 (445)
T ss_dssp TTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887666555555555554 45678888999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH
Q psy9213 161 SCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------DDVFALINYATFVE 233 (378)
Q Consensus 161 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~-------~~~~~l~~~~~~~~ 233 (378)
+++.+++.++.+++.+|++++|||||.+|++|+|+| |+++|+++++++.+++.++.+. +.++.+.++.++..
T Consensus 283 ~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (445)
T 3l1l_A 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFT 361 (445)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7899999999999977765542 34678999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHhhhheeec
Q psy9213 234 SSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKD 309 (378)
Q Consensus 234 ~~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (378)
++.|.+.+++++++|+|+| .+|. +.+.+++.++.+.+.++++. .++.....+..++++|+++|...+++++
T Consensus 362 ~~~y~~~~~~~~~~r~~~~-~~r~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 362 LVPYLYTCAALLLLGHGHF-GKAR-PAYLAVTTIAFLYCIWAVVG---SGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSS-GGGC-TTTHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcCc-cccc-chhHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998886 3332 23336777777777666543 4555667788888999988876554443
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=5.3e-35 Score=283.04 Aligned_cols=291 Identities=18% Similarity=0.202 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHHHhHh
Q psy9213 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFS 82 (378)
Q Consensus 3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (378)
.+++.+++++.+.+|++|+|..++++.+++.++++.++++++.++... +++++.+.+.+ .++.+++.++..++|+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~--~g~~~~~~~~~~~~~a 200 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAP--SAVSGMIFASAIFFLS 200 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSH--HHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCC--cchHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999988887663 34444433322 2245678888889999
Q ss_pred ccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcc-hhHHHHHHHhhhh-hhhhHHHHHH
Q psy9213 83 YSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS-NTVAVTFGAKILP-MLTWLMPLFV 160 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 160 (378)
|.|+|.+++++||+|||+|++||++..+..+++++|++..+......|++++.++ +.+.........+ +...++.+..
T Consensus 201 ~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~ 280 (444)
T 3gia_A 201 YMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGA 280 (444)
T ss_dssp GTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887643 3444444444444 4557888899
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy9213 161 SCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTS 240 (378)
Q Consensus 161 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~ 240 (378)
+++.+++.++.+++.||++++|||||.+|++|+|+| | ++|+++++++++++.++.+..+++.+.++.+.+.++.|.+.
T Consensus 281 ~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 358 (444)
T 3gia_A 281 LFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFV 358 (444)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 4 45999999999999988888899999999999999999999
Q ss_pred HHHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCcc----cchHHHHHHHHHHHHHHHHhhhhee
Q psy9213 241 VTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYV----KPWEVGIGLLMILSGIPVYMVFVYW 307 (378)
Q Consensus 241 ~~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (378)
+++++++|+++++. .+.+.++++.+.+.+....+. ++........+.+...+.+..++++
T Consensus 359 ~~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (444)
T 3gia_A 359 ILSHYILIDEVGGR-------KEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKV 422 (444)
T ss_dssp HHHHHHTHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCc-------chHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887442 156667776666655443222 2233444444455555544444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.24 E-value=0.0012 Score=64.06 Aligned_cols=95 Identities=5% Similarity=-0.098 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhHHHHHHH-HhHh
Q psy9213 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYS-GLFS 82 (378)
Q Consensus 4 ~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (378)
+..+++.++...+.++|.|...+++.+...+.++.++.+.+..+.... .+..+... ..+ .....++..++.. ..+.
T Consensus 144 v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g-~~~~~~~~-~~~-~~~~~~f~~ai~~~~~~~ 220 (501)
T 2jln_A 144 LWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGAD-VSLGEVMS-MGG-ENPGMPFSTAIMIFVGGW 220 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHTT-CCC-SSCCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhhhc-cCC-ccchHHHHHHHHHHHHHH
Confidence 334456667778889999999999999888887777666655443321 00011111 011 1112234444433 2222
Q ss_pred ccChhhHHhhhhhhhCccc
Q psy9213 83 YSGWNYLNFVTEELKNPYK 101 (378)
Q Consensus 83 ~~G~e~~~~~a~E~knP~k 101 (378)
..+.-..+.++.+.|+|+.
T Consensus 221 ~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 221 IAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHTTTHHHHTTBCCCTT
T ss_pred HHHHhccCcccccCCCCcc
Confidence 2333446777788887755
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.20 E-value=0.54 Score=45.30 Aligned_cols=179 Identities=9% Similarity=0.023 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCC----CCCCCCCCCCCChhhHHHHHHHH
Q psy9213 7 ILLESLLTAINCYNV-KWVTRLQDVFTATKMLALGGIVIAGMWFLAMG--NTE----NIAHPMQNSNWDPGYVALSFYSG 79 (378)
Q Consensus 7 ~~~~~~~~~ln~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (378)
.++.++...+-.+|+ |..+|+..++.-.-.+.++++.+-++...... ..+ .+.++++.- .+..-+..+..++
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L-~~~~vw~~A~gQ~ 251 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKL-KDPGVWIAAVGQI 251 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHh-CCHHHHHHHHHHH
Confidence 455666777888999 78999999988777776666666554432100 111 123344332 1234577888899
Q ss_pred hHhc-cChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHH------HHHHh-cCC-hhhhhcch--hHHHHHHHhh
Q psy9213 80 LFSY-SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVN------VAYFV-VLS-KEELLSSN--TVAVTFGAKI 148 (378)
Q Consensus 80 ~~~~-~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~------~~~~~-~~~-~~~l~~~~--~~~~~~~~~~ 148 (378)
+|++ .|+.....++.=.|+ +.|++|........-...-++.. +.... ..+ .++..+++ ..........
T Consensus 252 FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P~a 330 (519)
T 2a65_A 252 FFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAI 330 (519)
T ss_dssp HHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHH
T ss_pred HHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHHHH
Confidence 9988 577777777765554 56777766555554222222211 11111 122 12222222 2222112222
Q ss_pred hhh--hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCC
Q psy9213 149 LPM--LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGH 187 (378)
Q Consensus 149 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 187 (378)
+.. .+.+..+..++..+..+.++..+.-....+.-+|+.
T Consensus 331 f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~ 371 (519)
T 2a65_A 331 FSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL 371 (519)
T ss_dssp HTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 221 344555555555555666666666666666667765
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.76 E-value=2.2 Score=41.33 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCC
Q psy9213 138 NTVAVTFGAKILP-MLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGH 187 (378)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 187 (378)
+.....+.+ .+| ++.-++.++++.+..++..+.+.+.+-.+ ++|=.
T Consensus 307 d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 307 DKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp GGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred chHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 333333333 444 34556667777778888888888877764 45533
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=93.93 E-value=5.2 Score=39.24 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=21.5
Q ss_pred hhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9213 147 KILP-MLTWLMPLFVSCSTFGALNGAIFASSRLF 179 (378)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 179 (378)
+.+| ++..++.++++.+..++..+.+.+.+-.+
T Consensus 344 ~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 344 QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45556666677777777777777777664
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=49.76 E-value=1.8e+02 Score=27.83 Aligned_cols=29 Identities=7% Similarity=-0.201 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9213 221 DVFALINYATFVESSFTLTSVTGLLWLRL 249 (378)
Q Consensus 221 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 249 (378)
.+++.+-+.++.+.+...+.+.++++.-+
T Consensus 477 aLQt~~ii~alPf~~v~llm~~sl~k~l~ 505 (539)
T 4ain_A 477 NLQNVTIVAATPFLFVVIGLMFALVKDLS 505 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666665443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=33.01 E-value=3.2e+02 Score=25.89 Aligned_cols=89 Identities=13% Similarity=-0.044 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCC----ChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhh---hHHHHH
Q psy9213 154 WLMPLFVSCSTFGALNGAIFASSRLFFVGARNGH----LPKAIALINVKRYTPCPSLVFLCIITLLLMCID---DVFALI 226 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~----lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~---~~~~l~ 226 (378)
.++....++..+.-..++.-+.+-++-.++..|. =|+...|+ .++++. ++++..++..+ .+++.+
T Consensus 410 ~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~ri-------fW~v~~-g~va~~LL~~ggl~aLQ~~~ 481 (509)
T 2wsw_A 410 TATMWGFFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRI-------GWSVLV-GIIGIILLALGGLKPIQTAI 481 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHH-------HHHHHH-HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHH-------HHHHHH-HHHHHHHHHhccHHHHHHHH
Confidence 3444444444444555666667777777776652 12222222 133332 22333344333 567777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q psy9213 227 NYATFVESSFTLTSVTGLLWLRLK 250 (378)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~r~~ 250 (378)
-++++.+.+...+.+.++++.-++
T Consensus 482 ii~alPf~~v~l~~~~sl~k~l~~ 505 (509)
T 2wsw_A 482 IAGGCPLFFVNIMVTLSFIKDAKV 505 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777665443
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.91 E-value=2.5e+02 Score=20.93 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy9213 288 GIGLLMILSGIPV 300 (378)
Q Consensus 288 ~~~~~~~~~~~~~ 300 (378)
.+...++++|+.+
T Consensus 69 ~~~~~~~~~G~~~ 81 (139)
T 3eff_K 69 LVAVVVMVAGITS 81 (139)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
Done!