RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9213
(378 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 342 bits (879), Expect = e-114
Identities = 151/306 (49%), Positives = 216/306 (70%), Gaps = 2/306 (0%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIA--HPMQNSNWDP 69
LLT +NC +VKW TR+QD+FTA K+LAL I+I G L G E++ + + +
Sbjct: 175 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSA 234
Query: 70 GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVL 129
G + L+FYSG+++Y GWNYLNFVTEE+KNPY+ LP AI +SMP+ T +Y+L N+AYF VL
Sbjct: 235 GGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294
Query: 130 SKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP 189
S EELL+S VAV FG ++L +++W MP V S FG++NG++F+SSRLFFVG R GHLP
Sbjct: 295 SPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP 354
Query: 190 KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRL 249
+++I+VKR TP PSL+ +C +TLL++ D+++LIN +F F +V GLLWLR
Sbjct: 355 SLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRY 414
Query: 250 KRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKD 309
KRP++ RPIKV + P+ F + FL+ L +Y P G+G +++L+G+PVY V+W++
Sbjct: 415 KRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQN 474
Query: 310 KPRWLN 315
KP+W
Sbjct: 475 KPKWFR 480
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 116 bits (293), Expect = 5e-29
Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 9/316 (2%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
LLT +N +K ++ + T K++ L +I G F + N+ P G
Sbjct: 144 LLTLLNLRGIKASAKINSIITILKIIILLIFIILG-LFAFGFSNGNLFAPFNPGGGSFGG 202
Query: 72 VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK 131
+ + F+++G+ + + EE+KNP + +P+AI +S+ + I+Y+L + VL
Sbjct: 203 ILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPA 262
Query: 132 EELLSSNT---VAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHL 188
+L +S +A+ ++ + S FG+L I A SR+ + AR+G L
Sbjct: 263 GDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLL 322
Query: 189 PKAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALINYATFVESSFTLTSVTG 243
PK A +N K TP +L+ II+L+L+ + AL++ A+ L
Sbjct: 323 PKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALA 382
Query: 244 LLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMV 303
LL LR K+PDLKRP ++ + I I A L+ L + L +IL + +
Sbjct: 383 LLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIY 442
Query: 304 FVYWKDKPRWLNNIAV 319
+ + R L+ I +
Sbjct: 443 LLVYLGLGRLLSAILI 458
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 109 bits (274), Expect = 2e-26
Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 15/290 (5%)
Query: 3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPM 62
Y + I + + IN +K ++Q++ K+L ++I LA+G N+
Sbjct: 119 YGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNS 178
Query: 63 QNSNW--DPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLL 120
+ + V L L+S+ G+ V+EE+K +++PKA+ + + + ++YLL
Sbjct: 179 WTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEEVKK--RDVPKALFIGLLIVGVLYLL 236
Query: 121 VNVAYFVVLSKEELLSSNTV----AVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASS 176
VN+ + V+ +E+ + + A+ F A P ++ + ++ S GA+N AI ASS
Sbjct: 237 VNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASS 296
Query: 177 RLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALINYATF 231
R+ AR+G LPK A +N K +P +L+ I++L+L+ + AL++ +
Sbjct: 297 RVLEALARDGVLPKFFAKVN-KFGSPVRALILTAILSLILLLLFLLSGAAYNALLSLSAV 355
Query: 232 VESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMY 281
L + GLL LR KRPDL R + I + FL+ +
Sbjct: 356 GYLLVYLLLIIGLLILRKKRPDLPRIKGR-WPVAILAILFILFLLVALFF 404
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 93.3 bits (232), Expect = 6e-21
Identities = 65/304 (21%), Positives = 138/304 (45%), Gaps = 18/304 (5%)
Query: 7 ILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN 66
+L+ LT I K ++ D+ K+ AL G A N PM
Sbjct: 138 LLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFM-PM---- 192
Query: 67 WDPGYVALSFYSGL--FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVN-V 123
G+ + + L F++ G+ ++ EE+KNP +++PKAI +S+ + T++Y+LV V
Sbjct: 193 ---GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAV 249
Query: 124 AYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGA 183
V ++ S+ +++ + ++ S + I+ +SR+ F +
Sbjct: 250 ILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309
Query: 184 RNGHLPKAIALINVKRYTPCPSLVF---LCIITLLLMCIDDVFALINYATFVESSFTLTS 240
R+G LP +++ ++ K TP S++ + L+ ++ + L + T +F +
Sbjct: 310 RDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTL--IAFAAVN 367
Query: 241 VTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPV 300
V ++ LR +RPD++R + ++ + +++ + L + + P L+ +L G
Sbjct: 368 VA-VIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLL-LNLGPGTTVWFLVWMLLGSVF 425
Query: 301 YMVF 304
Y ++
Sbjct: 426 YFIY 429
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 78.7 bits (194), Expect = 5e-16
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 20/289 (6%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
+ IN V +L+ V TA ++ALG + A + N N +S Y
Sbjct: 131 VFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAY 190
Query: 72 VALSFYSGLFS---YSGWNYLN-----FVTEELKNPYKNLPKAICVSMPLSTIVYLLVNV 123
V G+F+ ++ W +L EE KNP +++P+ + ++ + + V
Sbjct: 191 V------GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILV 244
Query: 124 AYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFG---ALNGAIFASSRLFF 180
+EL+ SN I TW+ FG + +G I+ SR F
Sbjct: 245 VGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIF 304
Query: 181 VGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTS 240
+R G+LP++++ +N K+ P ++V +I L +I + F + S
Sbjct: 305 ALSRAGYLPESLSKVNRKK-APVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLS 363
Query: 241 VTGLLWLRLKRPDLKRPIKVS--IILPITFFIIAAFLVTLPMYVKPWEV 287
+ LR++RPD++RP + I+ P ++A + YV P V
Sbjct: 364 MAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVV 412
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 71.2 bits (175), Expect = 1e-13
Identities = 64/353 (18%), Positives = 135/353 (38%), Gaps = 50/353 (14%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGG-IVIAGMWFLAMGNTENIAHPMQNSNW--- 67
LL IN VK + F K++A+ G I++ + L+ G + A+ N
Sbjct: 123 LLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFIIPLSGGGPNDGAYLGYNGGKNNF 182
Query: 68 ------DPGYVALSFYSGL----FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIV 117
+F+S F+++G + E+KNP K +PKAI ++ TI
Sbjct: 183 PPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKAILQAVWRITIF 242
Query: 118 YLLVNVAYFVVLSKEELLSSNTVAVTFGAKIL-------PMLTWLMPLFVSCSTFGALNG 170
Y+L +A +++ + A ++ L L+ + + A N
Sbjct: 243 YILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAVILTAALSAANS 302
Query: 171 AIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYAT 230
++++ SR+ + AR+G PK + ++ K P +++ I+LL + + + I +
Sbjct: 303 SLYSGSRVLYALARDGLAPKFLKKVD-KSGVPLRAILLSTAISLLAVLLASLNPAIVFNF 361
Query: 231 FVESS-------FTLTSVTGLLWLRLKRPDLKRPIKVSIILP-------------ITFFI 270
+ S + L S++ L + + + + ++ IT +
Sbjct: 362 LLAISGLIGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKACLGPFGVILGLAALITILL 421
Query: 271 IAAF--LVTLPMYVKPWEVGIGLLMILSGIPVYMVF-----VYWKDKPRWLNN 316
I A + +P K W + L ++++ ++ K+ +
Sbjct: 422 IQALYASLPVPKPPKNWGAASFAALYLI-ALLFLILLIGVKLHVKNWRPQVLK 473
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 61.0 bits (148), Expect = 3e-10
Identities = 63/305 (20%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 26 RLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVAL--SFYSGLFSY 83
Q + T K++ ++ G+++ N A ++AL + +SY
Sbjct: 151 AFQTLITIAKIIPFTIVIGLGIFWFKAENF--AAPTTTAIGATGSFMALLAGISATSWSY 208
Query: 84 SGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVT 143
+G + ++T E+KNP K +P+A+ S L ++Y L+ + ++ ++L +S T ++
Sbjct: 209 TGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSET-PIS 267
Query: 144 FGAKILPMLTWLMPLFVSCST----FGALNGAIFASSRLFFVGARNGHLPKAIALINVKR 199
+P L +FV+ + G+L+ + RL + A++ K ++ K
Sbjct: 268 DALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKY 327
Query: 200 YTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLK---- 255
TP S++ + + + + D+ +L+ Y T V + ++W R KR D K
Sbjct: 328 NTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCR-KRDDYKPLWR 386
Query: 256 ---RPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGI--GLLMILSGIPVYMVFVYWKDK 310
+ ++ + + ++A+ V P+ G+ +++I +G+P Y +W +
Sbjct: 387 TPAFGLMTTLAIASSLILVASTFVWAPI------PGLICAVIVIATGLPAYA---FWAKR 437
Query: 311 PRWLN 315
R LN
Sbjct: 438 SRQLN 442
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 60.6 bits (147), Expect = 6e-10
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 8/221 (3%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN--IAHPMQNSNWDP 69
LL + + VK + +FTA +L L ++IAG + N I + P
Sbjct: 171 LLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAG---FTKADVANWSITEEKGAGGFMP 227
Query: 70 GYVALSFYSG---LFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
F++ G++ + EE+KNP + +P I S+ + + Y L++ A
Sbjct: 228 YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALT 287
Query: 127 VVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNG 186
+++ L V F +++ + C +L G +F R+ + AR+G
Sbjct: 288 LMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDG 347
Query: 187 HLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALIN 227
L K +A IN K TP + V I L+ + D+ AL++
Sbjct: 348 LLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVD 388
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 58.4 bits (142), Expect = 2e-09
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 49/337 (14%)
Query: 11 SLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN-WDP 69
LL A+N +VK L+ F K+ A+ ++ G+ L G SN WD
Sbjct: 136 VLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLWDH 194
Query: 70 GY--------VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLV 121
G + +F++ G + E K+P K +PKAI S+ +++ +
Sbjct: 195 GGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAI-NSVIWRILIFYVG 253
Query: 122 NVAYFVVLS---KEELLSSNTVAVTFGAKI-LPMLTWLMPLFVSCSTFGALNGAIFASSR 177
++ FV+LS ++ + VT + I +P +M V + ALN ++++SR
Sbjct: 254 SL--FVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSR 311
Query: 178 LFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFT 237
+ + A+ G PKA A ++ KR P +++ ++ LL ++NY E F
Sbjct: 312 MLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLG-------VVLNYI-LPEKVFE 362
Query: 238 -LTSVTGLL----WL---------RLKRPDLKRPIKVSIIL-----PITFFIIAAFLVTL 278
+TS +GL WL R +P + +K + L +T +A LV +
Sbjct: 363 LVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLM 422
Query: 279 ---PMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPR 312
P VG L++L GI + K R
Sbjct: 423 LFDPDTRISLLVGPVWLVLL-GIGYLVKRKKKARKAR 458
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 57.8 bits (140), Expect = 3e-09
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 30/253 (11%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAM------GNTENIAHPMQNS 65
LL ++N VK ++ F K++A+ +++ G+ +AM G + AH +
Sbjct: 144 LLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDG 203
Query: 66 NWDP----GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIV-YLL 120
P G+ A F +F++ G + E K+P K+LP+AI S+P+ I+ Y+
Sbjct: 204 GMFPKGLSGFFA-GFQIAVFAFVGIELVGTTAAETKDPEKSLPRAIN-SIPIRIIMFYVF 261
Query: 121 VNVAYFVVLSKEELLSSNTVAVTFGAKI-LPMLTWLMPLFVSCSTFGALNGAIFASSRLF 179
+ V ++ + V + LP ++ V S + N +F++SR+
Sbjct: 262 ALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321
Query: 180 FVGARNGHLPKAIALINVKRYTPCPSLVFLCII----TLLLMCIDDVFALINYATFVESS 235
F A+ G PKA A ++ KR P L F CI +LL V +
Sbjct: 322 FGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVI----------GA 370
Query: 236 FTL-TSVTGLLWL 247
FTL T+V+ +L++
Sbjct: 371 FTLVTTVSAILFM 383
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are putative
putative glutamate/gamma-aminobutyrate antiporters. Each
member of the seed alignment is found adjacent to a
glutamate decarboxylase, which converts glutamate (Glu)
to gamma-aminobutyrate (GABA). However, the majority
belong to genome contexts with a glutaminase (converts
Gln to Glu) as well as the decarboxylase that converts
Glu to GABA. The specificity of the transporter remains
uncertain.
Length = 474
Score = 49.8 bits (119), Expect = 1e-06
Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 43/347 (12%)
Query: 3 YTLFILLES--LLTAINCYNVKWVTRLQD----VFTATKMLALGGIVIAGMWFLAMGNTE 56
Y L +L L T I V T++ V T L VI G+ +L G
Sbjct: 122 YVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAIL---VILGISYLLTGGES 178
Query: 57 NIAHPMQNSNWDPGY-----VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSM 111
I P++ + P + V L+ LF Y+G +++ NP KN P AI ++
Sbjct: 179 QI--PLRWDDAFPDFTNFDNVVLAASIFLF-YAGMEMNAVHVKDVDNPDKNYPIAILIAA 235
Query: 112 PLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKI-LPMLTWLMPLFVSCSTFGALNG 170
+ ++++L +A ++ +E++ + ++ V F L+WL P+ G L G
Sbjct: 236 LGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAG 295
Query: 171 A---IFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALIN 227
+ S A+ G+LP N K P + I +L + V +
Sbjct: 296 VVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQ 354
Query: 228 YATFVESSFT--------LTSVTGLLWLRLKRPDLKRPIKVSIILPITFFI-----IAAF 274
A + S T L ++LR +PD RP ++ L +FI + +
Sbjct: 355 AAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSA 414
Query: 275 LVTLPMYVKPWEVGIG-------LLMILSGIPVYMVF-VYWKDKPRW 313
L + ++ P ++G G LL+ L+ + V F +Y + KP W
Sbjct: 415 LAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRKPHW 461
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 48.4 bits (115), Expect = 3e-06
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 22/223 (9%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
++ A+N NV+ + F K+LA+ G++ G+W L G+ A + N G+
Sbjct: 145 IINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKAS-IDNLWRYGGF 203
Query: 72 VA-------LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVY--LLVN 122
A LS +FS+ G + E ++P K++PKA+ + +VY LL
Sbjct: 204 FATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV------NQVVYRILLFY 257
Query: 123 VAYFVVLSK-----EELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSR 177
+ VVL E +S+ + F ++ + + ++ N ++++SR
Sbjct: 258 IGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317
Query: 178 LFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCID 220
+ F + G+ PK + ++ +R P SL+ IT L++ I+
Sbjct: 318 MLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLIN 359
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 47.9 bits (114), Expect = 5e-06
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 12/215 (5%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
L T INC V+W++R+ + ++ +G + + G+ F + + PGY
Sbjct: 154 LTTVINCIGVEWMSRVNTIGVTCEI--VGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGY 211
Query: 72 VALSFYSGL---FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVV 128
SGL + G+ ++EE KNP + P+ I ++ +S + L+ + +
Sbjct: 212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMA 271
Query: 129 LSK--EELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNG 186
+ L++ + A + ++ + V+ + A SRL F AR+G
Sbjct: 272 APSLTDGRLAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDG 331
Query: 187 HLPKA--IALINVKRYTPC-PSLVF--LCIITLLL 216
LP + ++ ++ + TP PS+V LCI LL+
Sbjct: 332 KLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLI 366
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 47.6 bits (114), Expect = 7e-06
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 37/239 (15%)
Query: 30 VFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNW-DPGY-------VALSFYSGLF 81
V T + LG I+I G + + W DPG F F
Sbjct: 194 VLTIIGFIILGIIIICG----GGPT----HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAF 245
Query: 82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLL-VNVAYFVVLSKEELLSSNTV 140
S+SG + E +NP K++PKAI + Y+L + V +V + L N+
Sbjct: 246 SFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSS 305
Query: 141 AVT-----------FGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP 189
+ G + + M + S A N ++ASSR+ + A+ G P
Sbjct: 306 SGVAASPFVIAIKNAGIPVAASI---MNAVILTSVLSAANSGLYASSRMLYSLAKQGKAP 362
Query: 190 KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLL-WL 247
K A ++ +R P +L ++TLL + + + T ++ ++G + W
Sbjct: 363 KIFAKVD-RRGVPLVAL----LVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWG 416
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 47.3 bits (113), Expect = 7e-06
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 72 VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAY-FVVLS 130
V F + FS+ G + E NP K++P+A + + Y+L F+V
Sbjct: 199 VCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPY 258
Query: 131 KEELLSSNT-----------VAV-TFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRL 178
+ L S++ +A+ G K+LP + + S A N +++ASSR
Sbjct: 259 NDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHI---FNAVILISVLSAANSSLYASSRT 315
Query: 179 FFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLL 215
+ A G PK A ++ +R P +++ + LL
Sbjct: 316 LYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLL 351
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional.
Length = 456
Score = 46.1 bits (109), Expect = 2e-05
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
++ AIN NVK ++ F K++A+ ++I G W L GN A ++ WD G
Sbjct: 136 VINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA--TVSNLWDQGG 193
Query: 72 VALSFYSGL--------FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNV 123
++GL FS+ G + E NP +++PKA + +++ + ++
Sbjct: 194 FLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATN-QVIYRILIFYIGSL 252
Query: 124 AYFVVLSKEELLSSNT--VAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFV 181
A + L ++++T + F + + + V + N ++ +SR+ F
Sbjct: 253 AVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFG 312
Query: 182 GARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTL 238
A+ G+ PKA+A ++ KR P +++ ++T L C+ LINY ES+F L
Sbjct: 313 LAQQGNAPKALASVD-KRGVPVNTILVSALVTAL--CV-----LINYLA-PESAFGL 360
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter.
Lowered cutoffs from 1000/500 to 800/300, promoted from
subfamily to equivalog, and put into a Genome Property
DHH 9/1/2009 [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 507
Score = 42.2 bits (99), Expect = 4e-04
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 22/223 (9%)
Query: 58 IAHPMQNSNWDPGYVALS----FYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPL 113
IA + + + P + + F + + +Y G EL+NP ++ P A+ + M
Sbjct: 178 IAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIA 237
Query: 114 STIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKIL---PMLTWLMPLFVSCSTFGAL-- 168
+ + + + V+ +E+ S V TF IL + WL+ + + FG L
Sbjct: 238 AICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAE 297
Query: 169 -NGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALIN 227
I SR F A+ G LP A A +N K P P ++ IIT + I N
Sbjct: 298 IASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGN 356
Query: 228 YATFVESSFTLTSV----------TGLLWLRLKRPDLKRPIKV 260
+F+ + LT V G L LK PDLKR +
Sbjct: 357 NLSFL-IAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNI 398
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 41.0 bits (96), Expect = 7e-04
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 74 LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLS--- 130
+S +F+Y G + E K+P K++P+AI S+P+ +V+ + + FV++S
Sbjct: 203 MSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN-SVPMRILVFYVGTL--FVIMSIYP 259
Query: 131 --------KEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVG 182
+L+ + +TF A IL + V ++ A+N +F R+
Sbjct: 260 WNQVGTNGSPFVLTFQHMGITFAASILNFV-------VLTASLSAINSDVFGVGRMLHGM 312
Query: 183 ARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-----DDVFALI-NYATF 231
A G PK + + +R P +++ + L + + ++VF +I + ATF
Sbjct: 313 AEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATF 366
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional.
Length = 499
Score = 40.4 bits (94), Expect = 0.001
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 11 SLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAM-----GNTENIAHPMQNS 65
+++ +N VKW ++ F K+LA+ ++ G FL GNT N
Sbjct: 153 TIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNG 212
Query: 66 NWDPGYV--ALSFYSG-LFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVN 122
+ P + AL G +F+++ + E K+P +PKAI + + Y+
Sbjct: 213 GFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSV 272
Query: 123 VAYFVVLSKEELLSSNTVAVTFGAKI-LPMLTWLMPLFVSCSTFGALNGAIFASSRLFFV 181
V ++L + + VTF +K+ +P + +M + V + +LN ++ + R+
Sbjct: 273 VLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRS 332
Query: 182 GARNGHLPKAIA 193
A G P +A
Sbjct: 333 MAMGGSAPSFMA 344
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease. GABA permease
(gabP) catalyzes the translocation of 4-aminobutyrate
(GABA) across the plasma membrane, with homologues
expressed in Gram-negative and Gram-positive organisms.
This permease is a highly hydrophobic transmembrane
protein consisting of 12 transmembrane domains with
hydrophilic N- and C-terminal ends. Induced by
nitrogen-limited culture conditions in both Escherichia
coli and Bacillus subtilis, gabP is an energy dependent
transport system stimulated by membrane potential and
has been observed adjacent and distant from other GABA
degradation proteins. GabP is highly homologous to amino
acid permeases from B. subtilis, E. coli, as well as to
other members of the amino acid permease family
(pfam00324). A member of the APC
(amine-polyamine-choline) transporter superfamily, GABA
permease possesses a "consensus amphiphatic region"
(CAR) found to be evolutionarily conserved within this
transport family. This amphiphatic region is located
between helix 8 and cytoplasmic loop 8-9, forming a
potential channel domain and suggested to play a
significant role in ligand recognition and
translocation. Unique to GABA permeases, a conserved
cysteine residue (CYS-300, E.coli) located at the
beginning of the amphiphatic domain, has been determined
to be critical for catalytic specificity [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 452
Score = 39.9 bits (93), Expect = 0.002
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 12 LLTAINCYNVK-------WVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN 64
+LT N Y+VK W ++ V + LG + I G F ++
Sbjct: 136 VLTLTNLYSVKSYGEFEFWFALIK-VIAIIAFIILGAVAIFG--FAPGSEVSGFSNLTGK 192
Query: 65 SNWDP---GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLV 121
+ P G V L+ +FS+ G + E NP K++ +A S+ IV+ L
Sbjct: 193 GGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT-NSVIWRIIVFYLG 251
Query: 122 NVAYFVVLSKEELLSSNTVAVTFGAKIL-----PMLTWLMPLFVSCSTFGALNGAIFASS 176
++ F+V++ S N + V +L P +M V + LN A++ +S
Sbjct: 252 SI--FIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309
Query: 177 RLFFVGARNGHLPKAIALINVKRYTPCPSLV 207
R+ + A G P+ +N K+ P +++
Sbjct: 310 RMLYSLAERGDAPRVFMKLN-KKGVPVQAVL 339
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 38.2 bits (89), Expect = 0.007
Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 25/233 (10%)
Query: 6 FILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLA-----MGNTENIAH 60
I + + IN KW+ R+ +L G + + LA + + +
Sbjct: 147 MIGIHLIHALINSLPTKWLPRITSSAA---YWSLLGFLTICITLLACKSPKFNDGKFVFT 203
Query: 61 PMQNSN--WDPGYVA--LSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTI 116
NS W PG A L + +S +G++ + EE++NP P+AI ++ + +
Sbjct: 204 NFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIV 263
Query: 117 VYLLVNVAYFVVLSKEELLSSNTVAV--------TFGAKILPMLTWLMPLFVSCSTFGAL 168
N+ F + + L S+T G K + + L +F
Sbjct: 264 TGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVT---SFFCA 320
Query: 169 NGAIFASSRLFFVGARNGHLPKA--IALINVKRYTPCPSLVFLCIITLLLMCI 219
+ A+SR+ + +R+G LP + + +N + P ++ + +L+ +
Sbjct: 321 ITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLL 373
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 37.2 bits (86), Expect = 0.013
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 27/207 (13%)
Query: 41 GIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGL---FSYSGWNYLNFV----- 92
GI I G WF G + +W+P + F+SG+ S + W +L
Sbjct: 160 GISIIG-WFWFSGT-------LYADSWNPHH--AGFFSGVGSSISITLWAFLGLESACAN 209
Query: 93 TEELKNPYKNLPKAICVSMPLSTIVYLL-VNVAYFVVLSKEELLSSNTVAVTFGAKILPM 151
T+ ++NP KN+P A+ + ++Y++ NV +V + E S+ + F P
Sbjct: 210 TDVVENPKKNVPIAVLGGTIGAAVMYIISTNVIAGIVPNMELANSNAPFGLAFSQMFNPT 269
Query: 152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCI 211
+ ++ + S FG+L G F + +F A G+ PK + + TP L+ + I
Sbjct: 270 VGKIVMGLMVISCFGSLLGWQFTIAEVFRSSADEGYFPKIFSKT-IGNGTP---LIGMLI 325
Query: 212 ITLLLMCIDDVFALINYATFVESSFTL 238
IT + + AL+ + + FT+
Sbjct: 326 IT----ILQSLLALMTISPSLSKQFTI 348
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 35.8 bits (83), Expect = 0.039
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 101 KNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPML--TW---L 155
++ KA + + ++Y+L+ + VL ++EL + A +L M+ W L
Sbjct: 229 SDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPN---PSMAAVLEMIVGKWGAVL 285
Query: 156 MPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLL 215
+ L + S G+L ++ + F A++G PK +N K P +L+ I+ L
Sbjct: 286 ISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQL 344
Query: 216 LM 217
+
Sbjct: 345 FL 346
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 33.0 bits (75), Expect = 0.25
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 31 FTATKMLA-LGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYL 89
FTA LA + G+ I G ++ + + NSN+ A S L+ + G
Sbjct: 149 FTAICGLAVILGVGIFGWFWFKPEMYLEVINATGNSNFSAIIAAASI--ALWGFLGIESA 206
Query: 90 NFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSS-----NTVAVTF 144
T +++NP K +PKA + + ++ + Y+ ++ E L++S + F
Sbjct: 207 VVSTGQVENPEKTVPKATVMGLLIAAVCYVASCTVIAGIIPHEVLINSAAPFADAAKYMF 266
Query: 145 GAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCP 204
++ + + + ++C FG+++G S A G PK A +N K P
Sbjct: 267 DNELAGNIASALSI-IAC--FGSISGWFILQSEAPRAAAEQGLFPKFFADLN-KNDVPMK 322
Query: 205 SLVFLCIITLLLMCI 219
SL+F T +LMC
Sbjct: 323 SLIF----TAILMCC 333
>gnl|CDD|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.
Length = 496
Score = 31.1 bits (71), Expect = 1.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 80 LFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLL 120
+F+Y G + + ++ +NP KN PK I ++ + +I Y L
Sbjct: 221 IFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSL 261
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 30.7 bits (70), Expect = 1.2
Identities = 47/267 (17%), Positives = 99/267 (37%), Gaps = 32/267 (11%)
Query: 31 FTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLN 90
A I++ + L + + + +N + L+ +F++ G L
Sbjct: 154 LVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLL 213
Query: 91 FVTEELKNP--YKNLPKAICVSMPLSTIVYLLVNVAYFVV---LSKEELLSS------NT 139
+ +K+P +K + K + ++ + T++Y+LV + ++ K +L +
Sbjct: 214 PIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLI 273
Query: 140 VAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFAS--SRLFFVGARNGHLPKAIALINV 197
+ +L++ + F I + LF GA H PK+ L V
Sbjct: 274 DIANLLLVLHLLLSYPLQAFP-----------IRQIVENLLFRKGASGKHNPKSKLLRVV 322
Query: 198 KRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRP 257
R +V +I + + + D +L+ + +F L L L+LK+ K
Sbjct: 323 IR---SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPP---LFHLKLKKTKKKSL 376
Query: 258 IKVSI--ILPITFFIIAAFLVTLPMYV 282
K+ IL + +I L+ +
Sbjct: 377 EKLWKPDILDVICIVIGLLLMAYGVAG 403
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
Length = 471
Score = 30.6 bits (69), Expect = 1.4
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%)
Query: 30 VFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPG---YVALSFYSGLFSYSGW 86
V T + LGG I G + G+ + W P + ++ + F++SG
Sbjct: 163 VVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGT 222
Query: 87 NYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFV--VLSKEELLSSNTVAV-- 142
+ E +NP K +P AI +TI L++ +FV VL L+ V
Sbjct: 223 ELIGIAAGETENPAKVIPVAI-----RTTIARLVI---FFVGTVLVLAALIPMQQAGVEK 274
Query: 143 -----TFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINV 197
F +P + + + A N ++AS R+ + + G LP A +
Sbjct: 275 SPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT- 333
Query: 198 KRYTPCPSLVF 208
KR P +L
Sbjct: 334 KRGIPLTALSV 344
>gnl|CDD|180671 PRK06724, PRK06724, hypothetical protein; Provisional.
Length = 128
Score = 29.5 bits (66), Expect = 1.4
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 73 ALSFYSGLFSYSGWNYLN---FVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVL 129
++SFY LFS GW LN + T E + +K + + I ++ I Y +N VV
Sbjct: 21 SISFYDMLFSIIGWRKLNEVAYSTGESEIYFKEVDEEIVRTLGPRHICYQAINRK--VVD 78
Query: 130 SKEELLSSNTVAVTFG 145
E LSS + + G
Sbjct: 79 EVAEFLSSTKIKIIRG 94
>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the
Nudix hydrolase from Enterococcus faecalis, which has an
unknown function. In general, members of the Nudix
hydrolase superfamily catalyze the hydrolysis of
NUcleoside DIphosphates linked to other moieties, X.
Enzymes belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity. They
also contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which forms a
structural motif that functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 128
Score = 28.0 bits (63), Expect = 4.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 285 WEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVG 327
V IG + + Y D +++ VF +R+VG
Sbjct: 54 LTVEIGRR-----LGSASRYFYSPDGDYDAHHLCVFYDARVVG 91
>gnl|CDD|148737 pfam07301, DUF1453, Protein of unknown function (DUF1453). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. The function
of this family is unknown. Members of this family seem
to be found exclusively in the Order Bacillales.
Length = 149
Score = 28.0 bits (63), Expect = 4.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 242 TGLLWLRLKRPDLKRPIKV-SIILPITFFIIAAFLVTLPMY-VKPWEVGIGLLM 293
++++R+K K+PI IILP F A + +P + V WEV ++
Sbjct: 16 ALVIFIRMKA--SKKPISGKKIILPPLFMSTGALMFVVPFFRVTGWEVLEAAIV 67
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional.
Length = 446
Score = 28.8 bits (64), Expect = 5.6
Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 7/201 (3%)
Query: 4 TLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQ 63
TL + +LL+ N ++ L V + LG + I+G F I+
Sbjct: 114 TLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISG--FYPYAEVSGISRLWD 171
Query: 64 NSNWDP---GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYL- 119
+ + P G V + +FS+ G + E P K++ +A + +I YL
Sbjct: 172 SGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231
Query: 120 -LVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRL 178
+ V + + L + + +P +M + S LN A++ +SR+
Sbjct: 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRM 291
Query: 179 FFVGARNGHLPKAIALINVKR 199
+ +R G P + IN +
Sbjct: 292 LYSLSRRGDAPAVMGKINRSK 312
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 28.5 bits (64), Expect = 6.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 324 RMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELD-VRQTIHVCP-GGLFL 371
R +GT + M QA ++M + G +LI+ + VR T P GG F+
Sbjct: 200 RHIGTQSGGMDQAISIMAQ-----QGVAKLIDFNPVRATDVQLPAGGTFV 244
>gnl|CDD|180279 PRK05834, PRK05834, hypothetical protein; Provisional.
Length = 194
Score = 28.1 bits (63), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 97 KNPYKNLP--KAICVSMPLSTIVYLL 120
+ YKN+ K I +MP T Y L
Sbjct: 78 ASIYKNISEAKFIAYAMPPYTTAYSL 103
>gnl|CDD|232950 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase
iron-sulfur protein. Succinate dehydrogenase and
fumarate reductase are reverse directions of the same
enzymatic interconversion, succinate + FAD+ = fumarate +
FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse
reactions are catalyzed by distinct complexes: fumarate
reductase operates under anaerobic conditions and
succinate dehydrogenase operates under aerobic
conditions. This model also describes a region of the B
subunit of a cytosolic archaeal fumarate reductase
[Energy metabolism, Aerobic, Energy metabolism,
Anaerobic, Energy metabolism, TCA cycle].
Length = 220
Score = 27.8 bits (62), Expect = 7.3
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 321 IGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPM 374
I SR T R ++ + G RCT C VCP G +NP
Sbjct: 173 IDSRDHATKDR-LEGLNDKNGVWRCTTCMNC----------SEVCPKG--VNPA 213
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 260
Score = 28.0 bits (63), Expect = 8.3
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 244 LLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMV 303
LL L +RP LKR +++ ++ I F V + VK VG L++ P+Y+
Sbjct: 33 LLPLLRRRPPLKRLLRLLLLG---ALQIGVFYVLYFVAVKRLPVGEAALLLYL-APLYVT 88
Query: 304 FVYW---KDKPRWLNNIAVFIG 322
+ K++PR L +A +G
Sbjct: 89 LLSDLMGKERPRKLVLLAAVLG 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,658,543
Number of extensions: 1960942
Number of successful extensions: 3035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2950
Number of HSP's successfully gapped: 161
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.8 bits)