RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9213
(378 letters)
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 140 bits (354), Expect = 9e-38
Identities = 48/315 (15%), Positives = 110/315 (34%), Gaps = 19/315 (6%)
Query: 7 ILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN 66
+++ + +N K +TR+Q V T ++ + GI + G ++ +
Sbjct: 130 VVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGT 189
Query: 67 WDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
+ G + + L+S+ G + +KNP +N+P A + ++ + Y+L A
Sbjct: 190 F--GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM 247
Query: 127 VVLSKEEL-LSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARN 185
++ L +S++ + ++ + G+L G + + A +
Sbjct: 248 GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307
Query: 186 GHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------DDVFALINYATFVESSFTL 238
G P A +N K TP L+ + I+ + + + + + L
Sbjct: 308 GLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYL 366
Query: 239 TSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE-VGIGLLMILSG 297
+ LL L RP + + F+ + + + V + ++
Sbjct: 367 YTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWA----VVGSGAKEVMWSFVTLMVI 420
Query: 298 IPVYMVFVYWKDKPR 312
+Y Y +
Sbjct: 421 TAMY-ALNYNRLHKN 434
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 117 bits (295), Expect = 1e-29
Identities = 62/325 (19%), Positives = 127/325 (39%), Gaps = 33/325 (10%)
Query: 7 ILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN 66
I + + TA+N + K V R + K+L LG + AG+ + S
Sbjct: 130 IGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT------------IHPSY 177
Query: 67 WDPGYVALSFYSGL-------FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYL 119
P + + SY G+ + +E ++NP KN+P+AI +S+ + VY+
Sbjct: 178 VIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYV 237
Query: 120 LVNVAYFVVLSKEELLSSNTVAVTFGAKIL--PMLTWLMPLFVSCSTFGALNGAIFASSR 177
V ++ L +EL+ ++ A+ AK + L+ + S A+N I+ +
Sbjct: 238 GVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGAN 297
Query: 178 LFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLL---MCIDDVFALINYATFVES 234
+ + A++G LP+ + L + +L ++ V ++ + V
Sbjct: 298 VAYSLAKDGELPEFFE--RKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMV-- 353
Query: 235 SFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMI 294
+ + L + K + S I+ + F++ + + + GI I
Sbjct: 354 IYLFVIL-SHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWIT--NRFVFYGIIATFI 410
Query: 295 LSGIPVYMVFVYWKDKPRWLNNIAV 319
G+ ++ + K + NN+ V
Sbjct: 411 --GVLIFEIIYRKVTKRTFSNNMYV 433
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 111 bits (278), Expect = 5e-27
Identities = 64/341 (18%), Positives = 121/341 (35%), Gaps = 36/341 (10%)
Query: 12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
L K+ R+ V +L L ++ + + + + +A M + + P +
Sbjct: 140 ALALTQFGGTKYTARIAKVGFFAGIL-LPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF 198
Query: 72 VALSFYSGL----FSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFV 127
+ SY G E+ NP ++ P A+ + M + + + ++ +
Sbjct: 199 SKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAM 258
Query: 128 VLSKEELLSSNTVAVTF---GAKILPMLTWLMPLF---VSCSTFGALNGAIFASSRLFFV 181
V+ E+ S V TF + + P + W + + + + I SR +V
Sbjct: 259 VIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318
Query: 182 GARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSV 241
A+ LP A A +N K P ++ +IT + + I N +F+ + LT V
Sbjct: 319 TAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIAL-ALTVV 376
Query: 242 T----------GLLWLRLKRPDLKRPIKV---------SIILPITFFIIAAFLVTLPMYV 282
G + L LK PDLKR + I+ + I+A + LP
Sbjct: 377 IYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDN 436
Query: 283 KPWEVGIGLLMILSGIPV----YMVFVYWKDKPRWLNNIAV 319
+ + +L + +Y + N V
Sbjct: 437 IQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGV 477
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 3e-12
Identities = 68/349 (19%), Positives = 105/349 (30%), Gaps = 123/349 (35%)
Query: 75 SFYSGLFSYSGWNYLNFVTEELKNPYKNLPK-----AICVSMPLSTIVYLLVNVAYFVV- 128
++ + W L+NP N P +I +S PL ++ L Y V
Sbjct: 207 KVFTQGLNILEW---------LENP-SNTPDKDYLLSIPISCPLIGVIQL---AHYVVTA 253
Query: 129 ----LSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCST----FGALNGAIFASSRLFF 180
+ EL S A ++ + ++ + F A + LFF
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLV------TAVAIAETDSWESF--FVSVRKAITVLFF 305
Query: 181 VGARNGH-------LPKAIALINVKRY--TPCPSLVFLCIITL----LLMCIDDV----- 222
+G R + LP +I +++ P P L I L + ++
Sbjct: 306 IGVR-CYEAYPNTSLPPSILEDSLENNEGVPSP---MLSISNLTQEQVQDYVNKTNSHLP 361
Query: 223 ------FALINYAT-FVESSFTLTSVTGL-LWLR-LKRPD---------LKRPIKVSII- 263
+L+N A V S S+ GL L LR K P +R +K S
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 264 LPITFFIIAAF----LVTLPMYVKPWEVGIGLLMILS--GIPVY---------------- 301
LP+ + F LV + V + IPVY
Sbjct: 421 LPVA----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 302 -----MVF---VYW----KDKPRWLNNIAVFIG----SRMVGTTTRNMQ 334
+ V W + K I F G S + T RN
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATH---ILDF-GPGGASGLGVLTHRNKD 521
Score = 32.7 bits (74), Expect = 0.27
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 8 LLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTEN------IAHP 61
+ E ++ I VKW T Q F AT +L G +G+ L N + +A
Sbjct: 475 ISERIVDCIIRLPVKWETTTQ--FKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 62 MQ-NSNWDPGY 71
+ N + D G+
Sbjct: 533 LDINPDDDYGF 543
Score = 27.7 bits (61), Expect = 9.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 256 RP-------IKVSIILPITFFIIAA-----FLVTLP 279
RP ++ +++P F IA+ F LP
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 1e-06
Identities = 57/353 (16%), Positives = 94/353 (26%), Gaps = 139/353 (39%)
Query: 19 YNVKWVTRLQDVFTATKML----ALGGIVIAGM--------------------------- 47
YNV +RLQ + L ++I G+
Sbjct: 129 YNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 48 WFLAMGN---TENIAHPMQN--SNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKN 102
W L + N E + +Q DP + + S +S ++ + EL+ K+
Sbjct: 186 W-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKS 240
Query: 103 LPKAICVSMPLSTIVYLLV--NVAYFVVLSKEELLSSNTV-AVTFGAKIL---------- 149
P C LLV NV ++ A KIL
Sbjct: 241 KPYENC----------LLVLLNVQ-----------NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 150 ---PMLTWLMPLFVSCSTFGALNG-AIFASSRLFFVGARNGHLPKAIALINVKRYTPCPS 205
T + L T ++ ++ R LP+ + N P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTN-------P- 327
Query: 206 LVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI-IL 264
L II + D A + W + L I+ S+ +L
Sbjct: 328 RR-LSIIAESI---RDGLATWDN-----------------WKHVNCDKLTTIIESSLNVL 366
Query: 265 PIT-----FFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPR 312
F ++ F P IP ++ + W D +
Sbjct: 367 EPAEYRKMFDRLSVF----PPSAH--------------IPTILLSLIWFDVIK 401
Score = 42.5 bits (99), Expect = 2e-04
Identities = 54/363 (14%), Positives = 107/363 (29%), Gaps = 105/363 (28%)
Query: 1 MEYT----LFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAG---------M 47
+Y L + ++ + +C +V+ + + + + + + I+++
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEE---IDHIIMSKDAVSGTLRLF 68
Query: 48 WFLAMGNTENIAHPM-----QNSNW----------DPGYVALSF-------YSGLFSYSG 85
W L E + + N + P + + Y+ ++
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 86 WNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVN---------VAYFVVLSKE-ELL 135
+N V+ PY L +A+ + L +L++ VA V LS + +
Sbjct: 129 YN----VSRL--QPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 136 SSNTVA-VTFGAK-----ILPMLTWLMPLFV---------SCSTFGALNGAIFASSRLFF 180
+ + +L ML L+ S + ++ RL
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 181 VGARNGHLPKAIALI---NVKRYTP---------CPSLVFLCIITLLLMCIDDVFALINY 228
P L+ NV C L+ T D + A
Sbjct: 240 ------SKPYENCLLVLLNV--QNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTT 287
Query: 229 ATFVE---SSFTLTSVTGLL--WLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVK 283
++ + T V LL +L + DL P +V P IIA +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 284 PWE 286
W+
Sbjct: 346 NWK 348
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.3
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 15/34 (44%)
Query: 232 VESSFTLTSVTGLLWLRLKRPDLKRP---IKVSI 262
+++S L+L D P IK ++
Sbjct: 25 LQAS-----------LKLYADD-SAPALAIKATM 46
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human
immunodeficiency virus type 2} SCOP: b.50.1.1 PDB:
1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A*
3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A
3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Length = 99
Score = 25.9 bits (57), Expect = 9.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 321 IGSRMVGTTTRNMQQARNMMGKLRCTL 347
+ M G T N+ RN++ L +L
Sbjct: 72 RATIMTGDTPINIF-GRNILTALGMSL 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,802,585
Number of extensions: 346324
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 17
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.4 bits)