BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9215
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XQN|M Chain M, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 119
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I K LKYNQAT TFHQWRD +QVYGLNF SKEDA+ FA AM++A+E
Sbjct: 61 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALE 112
>pdb|2IYB|A Chain A, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|B Chain B, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|C Chain C, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
pdb|2IYB|D Chain D, Structure Of Complex Between The 3rd Lim Domain Of Tes And
The Evh1 Domain Of Mena
Length = 114
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I K LKYNQAT TFHQWRD +QVYGLNF SKEDA+ FA AM++A+E
Sbjct: 59 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALE 110
>pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Complex With Acta
Peptide
Length = 112
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I K LKYNQAT TFHQWRD +QVYGLNF SKEDA+ FA AM++A+E
Sbjct: 58 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALE 109
>pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
pdb|1QC6|B Chain B, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
Length = 130
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 43/51 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAV 51
VVIN I+K LKYNQAT TFHQWRD +QVYGLNF+SKE+A +F+ A L+A+
Sbjct: 59 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAXLFAL 109
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVEC 53
VVINC I++ +KYNQAT FHQWRD +QV+GLNF SKEDA FA M A+E
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALEA 112
>pdb|1XOD|A Chain A, Crystal Structure Of X. Tropicalis Spred1 Evh-1 Domain
pdb|1XOD|B Chain B, Crystal Structure Of X. Tropicalis Spred1 Evh-1 Domain
Length = 118
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ CV+ + L YN+ T TFH WR + +GL F S DA +F R + A+E
Sbjct: 62 VVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
>pdb|1TJ6|A Chain A, Crystal Structure Of The Xenopus Tropicalis Spred1 Evh-1
Domain
pdb|1TJ6|B Chain B, Crystal Structure Of The Xenopus Tropicalis Spred1 Evh-1
Domain
Length = 118
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
V++ CV+ + L YN+ T TFH WR + +GL F S DA +F R + A+E
Sbjct: 62 VILECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
>pdb|3SYX|A Chain A, Crystal Structure Of The Wh1 Domain From Human
Sprouty-Related, Evh1 Domain-Containing Protein.
Northeast Structural Genomics Consortium Target Hr5538b
Length = 130
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ C++ K L YN+ T TFH W+ + + +GL F S DA +F R + A+E
Sbjct: 69 VVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 120
>pdb|2JP2|A Chain A, Solution Structure And Resonance Assignment Of The N-
Terminal Evh1 Domain From The Human Spred2 Protein
(Sprouty-Related Protein With Evh1 Domain Isoform 2)
Length = 126
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ C + K L Y +A TFH W+ + + +GL F S DA +F R + A+E
Sbjct: 71 VVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIE 122
>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l)
Conserved Homer 1 Domain
Length = 168
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFA 44
+IN I ++ + + + F QW D++ VYGL FSS+ FA
Sbjct: 60 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFA 105
>pdb|1DDV|A Chain A, Crystal Structure Of The Homer Evh1 Domain With Bound
Mglur Peptide
Length = 111
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 2 VINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFA 44
+IN I ++ + + + F QW D++ VYGL FSS+ FA
Sbjct: 56 IINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFA 100
>pdb|1I7A|A Chain A, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|B Chain B, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|C Chain C, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|D Chain D, Evh1 Domain From Murine Homer 2bVESL 2
Length = 111
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFA 44
V+IN I ++ + + + F QW D++ V+GL FSS+ FA
Sbjct: 55 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSELQLTKFA 100
>pdb|2P8V|A Chain A, Crystal Structure Of Human Homer3 Evh1 Domain
Length = 117
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQ--VYGLNFSSKEDADSFA 44
+IN + ++ + + + F QW D++ VYGL F+S++ FA
Sbjct: 57 AIINSTVTPNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFA 102
>pdb|1DDW|A Chain A, Homer Evh1 Domain Unliganded
Length = 120
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFA 44
+IN I + + + + F QW D++ VYGL FSS+ FA
Sbjct: 55 AIINSTITPNXTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFA 100
>pdb|2IFS|A Chain A, Structure Of The N-Wasp Evh1 Domain In Complex With An
Extended Wip Peptide
Length = 169
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 13 YNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAM 47
YN FH + + LNF+++E+A F +A+
Sbjct: 119 YNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAV 153
>pdb|1MKE|A Chain A, Structure Of The N-Wasp Evh1 Domain-Wip Complex
Length = 152
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 13 YNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAM 47
YN FH + + LNF+++E+A F +A+
Sbjct: 102 YNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAV 136
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 7 ILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADS 42
ILK + ++ F + KQ+Y + + + E+AD+
Sbjct: 12 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 47
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 7 ILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADS 42
ILK + ++ F + KQ+Y + + + E+AD+
Sbjct: 16 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 51
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein
Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 7 ILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADS 42
ILK + ++ F + KQ+Y + + + E+AD+
Sbjct: 32 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.128 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,966,311
Number of Sequences: 62578
Number of extensions: 57052
Number of successful extensions: 143
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 25
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)