Query psy9215
Match_columns 73
No_of_seqs 101 out of 124
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:51:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3syx_A Sprouty-related, EVH1 d 100.0 8.4E-31 2.9E-35 177.3 7.2 61 1-61 69-129 (130)
2 1egx_A VAsp, vasodilator-stimu 99.9 1.1E-25 3.8E-30 147.8 5.4 56 1-56 60-115 (115)
3 1xod_A Spred1; sprouty, EVH1, 99.9 3.1E-25 1.1E-29 146.3 7.1 57 1-57 62-118 (118)
4 1ddw_A GLGF-domain protein hom 99.9 2.9E-25 9.8E-30 147.2 6.7 59 1-59 55-115 (120)
5 1evh_A WH1 domain, protein (ME 99.9 3E-25 1E-29 144.9 6.1 55 1-55 58-112 (112)
6 2jp2_A Spred-2, sprouty-relate 99.9 5.5E-25 1.9E-29 146.9 5.7 55 1-55 71-125 (126)
7 1i2h_A PSD-ZIP45(homer-1C/VESL 99.9 1.4E-23 4.7E-28 146.6 6.4 56 1-56 60-117 (168)
8 1qc6_A EVH1 domain from ENA/VA 99.9 7.2E-22 2.5E-26 131.0 6.5 63 1-63 59-121 (130)
9 2ifs_A N-WAsp, wiskott-aldrich 99.3 2.3E-12 7.9E-17 89.7 7.1 57 1-57 107-163 (169)
10 1mke_A WIP - N-WAsp, fusion pr 99.3 4.4E-12 1.5E-16 87.1 5.9 57 1-57 90-146 (152)
11 3n7c_A ABR034WP; nuclear pore 98.4 7E-07 2.4E-11 59.1 5.8 56 1-56 62-124 (130)
12 2crf_A RAN binding protein 3; 98.3 1E-06 3.5E-11 59.5 5.8 53 1-54 81-139 (150)
13 1xke_A RAN-binding protein 2; 98.3 3.2E-06 1.1E-10 55.5 7.0 58 1-58 58-125 (130)
14 2y8g_A Ranbp3-B, RAN-binding p 98.0 7.7E-06 2.6E-10 54.4 5.5 51 1-51 69-125 (138)
15 1rrp_B Nuclear pore complex pr 97.9 1.5E-05 5E-10 52.5 4.2 51 1-51 72-132 (134)
16 1k5d_B RAN-specific GTPase-act 96.7 0.0029 1E-07 44.6 5.4 56 1-56 98-164 (201)
17 4hat_B RAN-specific GTPase-act 96.1 0.015 5.1E-07 38.7 5.7 54 1-54 73-137 (140)
18 2ec1_A Nucleoporin 50 kDa; ran 95.5 0.032 1.1E-06 36.2 5.4 52 1-52 61-124 (125)
19 3m1i_B RAN-specific GTPase-act 95.4 0.036 1.2E-06 38.9 5.9 54 1-54 124-188 (191)
20 2qkl_A DCP1 protein, SPBC3B9.2 80.6 2.7 9.4E-05 27.3 4.5 46 6-52 80-126 (127)
21 3igm_B PF14_0633 protein; AP2 74.9 7 0.00024 24.0 4.8 47 8-54 8-61 (77)
22 2lyd_A Decapping protein 1; DC 74.9 7.6 0.00026 25.4 5.4 46 6-52 86-132 (134)
23 3rcp_A Pleckstrin homology dom 62.1 9.2 0.00031 21.7 3.3 37 26-62 67-103 (103)
24 2lju_A Putative oxidoreductase 61.1 4.8 0.00016 25.8 2.1 16 31-46 63-78 (108)
25 2jya_A AGR_C_3324P, uncharacte 58.6 7.4 0.00025 24.9 2.7 17 30-46 54-70 (106)
26 2oqb_A Histone-arginine methyl 55.5 40 0.0014 22.0 7.1 50 2-51 57-106 (117)
27 1u5d_A SKAP55, SRC kinase-asso 34.0 60 0.0021 17.8 3.7 28 28-55 81-108 (108)
28 2dn6_A KIAA0640 protein; PH do 29.9 67 0.0023 18.0 3.5 33 26-58 77-109 (115)
29 2dhk_A TBC1 domain family memb 28.3 54 0.0018 19.2 3.0 37 26-62 78-114 (119)
30 1fao_A Dual adaptor of phospho 27.0 95 0.0033 17.9 4.3 31 26-56 86-116 (126)
31 4emo_A Sharpin; pleckstrin hom 24.5 1.6E+02 0.0053 19.5 4.9 50 3-53 72-124 (129)
32 2bop_A Protein (E2); protein-D 23.9 72 0.0025 19.3 3.0 35 12-47 27-68 (85)
33 1qhk_A RNAse HI, protein (ribo 23.3 42 0.0014 17.9 1.6 30 15-44 10-46 (47)
34 2yl5_A Beta-N-acetylhexosamini 21.3 39 0.0013 25.4 1.6 44 29-72 394-437 (442)
35 3bsu_A Ribonuclease H1, RNAse 20.2 56 0.0019 17.9 1.8 32 15-46 12-50 (53)
No 1
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=99.97 E-value=8.4e-31 Score=177.30 Aligned_cols=61 Identities=38% Similarity=0.660 Sum_probs=56.8
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCCCCccc
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWT 61 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~~~ 61 (73)
|+|||+|.+||+||||||+||||||+++||||||+|++||++|+++|+.||+.|.++++-+
T Consensus 69 vvinc~I~~~l~Ynkatp~FHqWrd~~~~yGL~F~S~~dA~~F~~~~~~Al~~L~~g~~~~ 129 (130)
T 3syx_A 69 VVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIEDISQGCPES 129 (130)
T ss_dssp EEEEEECCTTCEEEEEETTEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHGGGSCC---
T ss_pred EEEeeeecCCceEEecccccccccccCeEeecccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999987644
No 2
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=99.92 E-value=1.1e-25 Score=147.75 Aligned_cols=56 Identities=61% Similarity=0.977 Sum_probs=54.1
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSP 56 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~ 56 (73)
|+|||.|.+||+||+++|+||||||++++|||||+|++||++|.++|.+||+.|++
T Consensus 60 vv~~~~l~~~l~y~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~~ 115 (115)
T 1egx_A 60 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALEALEG 115 (115)
T ss_dssp EEEEEEECSSCCCCCSSTTEEEEESSSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeEEcCCceEEecCccceEEecCCEEEEEecCCHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999864
No 3
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=99.92 E-value=3.1e-25 Score=146.34 Aligned_cols=57 Identities=42% Similarity=0.744 Sum_probs=55.1
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPK 57 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~ 57 (73)
|+|||.|.+||+|||++|+||||||++++|||||+|++||.+|.++|..||+.|.++
T Consensus 62 vv~~~~l~~~~~y~~~~p~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~al~~l~~g 118 (118)
T 1xod_A 62 VVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIEDLSQG 118 (118)
T ss_dssp EEEEEECCTTCEEEEEETTEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEEeCCcEEEecCCcceEEEeCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999864
No 4
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.92 E-value=2.9e-25 Score=147.16 Aligned_cols=59 Identities=29% Similarity=0.534 Sum_probs=53.9
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCC--eEEeeecCCHHHHHHHHHHHHHHhHhcCCCCc
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFARAMLYAVECNSPKLK 59 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~--~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~ 59 (73)
|||||.|.+||+||+++|+||||||.+ ++|||||+|++||+.|..+|.+|++.|.....
T Consensus 55 vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~~~~ 115 (120)
T 1ddw_A 55 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKE 115 (120)
T ss_dssp EEEEEECCTTCCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHC----
T ss_pred EEEeCEecCCcEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 99999999999999999999999999985443
No 5
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=99.91 E-value=3e-25 Score=144.95 Aligned_cols=55 Identities=71% Similarity=1.075 Sum_probs=53.3
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNS 55 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~ 55 (73)
|+|||.|.+||+||+++|+||||||++++|||||+|++||++|.++|..||+.|.
T Consensus 58 vv~~~~l~~~~~y~~~~p~Fh~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~ 112 (112)
T 1evh_A 58 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLN 112 (112)
T ss_dssp EEEEEEECTTCCCBCCSSSEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeEecCCceEEecCccceeEecCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999999999874
No 6
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.91 E-value=5.5e-25 Score=146.94 Aligned_cols=55 Identities=38% Similarity=0.713 Sum_probs=53.5
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNS 55 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~ 55 (73)
|+|||.|.+||+|||++|+||||||++++|||||+|++||.+|.++|..||+.|.
T Consensus 71 vv~~~~l~~~l~Y~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~al~~l~ 125 (126)
T 2jp2_A 71 VVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLI 125 (126)
T ss_dssp EEEEEEESSCCCEEEEETTEEEEECSSSEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCceEEecCCcceEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999999985
No 7
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.89 E-value=1.4e-23 Score=146.61 Aligned_cols=56 Identities=30% Similarity=0.570 Sum_probs=53.6
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCC--eEEeeecCCHHHHHHHHHHHHHHhHhcCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFARAMLYAVECNSP 56 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~--~vyGL~F~s~~da~~F~~~~~~Ale~L~~ 56 (73)
|||||.|.+||+||+++|+||||||.+ +||||||+|++||++|.++|.+|++.|..
T Consensus 60 vvinc~I~~~l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~ 117 (168)
T 1i2h_A 60 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARL 117 (168)
T ss_dssp EEEEEECCTTCCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecEecCCcEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999 99999999999999999999999988763
No 8
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.85 E-value=7.2e-22 Score=131.01 Aligned_cols=63 Identities=57% Similarity=0.878 Sum_probs=54.0
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCCCCccchh
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWTRH 63 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~~~~~ 63 (73)
|++||.|.++|+||+++|.||||+|.+.+|||||+|++||..|..+|..||+.+.++.+.|.-
T Consensus 59 vi~n~~i~~~~~y~~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~~~~al~~~~~~~~~~~~ 121 (130)
T 1qc6_A 59 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPST 121 (130)
T ss_dssp EEEEEECCTTCEEEEEETTEEEEECSSCEEEEEESCHHHHHHHHHHHHHHHHHTC--------
T ss_pred EEEeeEEeCCcEEeccCCeeEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999887755543
No 9
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=89.69 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=54.2
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPK 57 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~ 57 (73)
|++|+-|..|++|++.+|.||+|+..+.++||||.+++||..|...|..+|+.....
T Consensus 107 vvweqELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~~~~~ 163 (169)
T 2ifs_A 107 LLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 163 (169)
T ss_dssp CCEEEECCSSCCCBCCCSSEEEEECSSSEEEEECSCHHHHHHHHHHHHHHHHHCSCC
T ss_pred EEEEeecccceeeccCCCeEEEeecCCcEEEEeeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999999999988654
No 10
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.29 E-value=4.4e-12 Score=87.11 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=52.7
Q ss_pred CeEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHhHhcCCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPK 57 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~ 57 (73)
|+.|+-|..|+.|++.+|.||+|+..+.++||||.+++||..|...|..+++.....
T Consensus 90 viweqELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~~~~~ 146 (152)
T 1mke_A 90 LLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 146 (152)
T ss_dssp EEEEEECCSSCCCBCSSSSEEEEECSSSEEEEEESSHHHHHHHHHHHHHHHHHCC--
T ss_pred EEEEeecccceeeccCCCeEEEEecCCcEEEEeeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999999999887654
No 11
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=98.37 E-value=7e-07 Score=59.14 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=48.3
Q ss_pred CeEeeeeecCceeeecc---Ccceeeee---CC-eEEeeecCCHHHHHHHHHHHHHHhHhcCC
Q psy9215 1 VVINCVILKSLKYNQAT---STFHQWRD---NK-QVYGLNFSSKEDADSFARAMLYAVECNSP 56 (73)
Q Consensus 1 VviNc~I~~gl~Ynkat---p~FHqWrd---~~-~vyGL~F~s~~da~~F~~~~~~Ale~L~~ 56 (73)
|++|+.|.++|+|.+.. ..|..|.+ +. ..|.|.|.|+++|..|..+|..+...+.+
T Consensus 62 v~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~~~~ 124 (130)
T 3n7c_A 62 VLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQAMEG 124 (130)
T ss_dssp EEEEEECCTTBCCEESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHC--
T ss_pred EEeeccccCCcEEeEcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhhhcc
Confidence 57999999999999986 69999984 22 67999999999999999999999988765
No 12
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=98.32 E-value=1e-06 Score=59.49 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=44.8
Q ss_pred CeEeeeeecCceeeeccCcceeee--e----CCeEEeeecCCHHHHHHHHHHHHHHhHhc
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWR--D----NKQVYGLNFSSKEDADSFARAMLYAVECN 54 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWr--d----~~~vyGL~F~s~~da~~F~~~~~~Ale~L 54 (73)
|++|+.|.++|+|+++++++.+|. | ..+.|.|.|.++++|..|.. +...+..|
T Consensus 81 v~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~~-~~e~i~~l 139 (150)
T 2crf_A 81 LILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAA-LHHRILAL 139 (150)
T ss_dssp EEEEEECCTTCCEECCSSSEEEEEEEBSSSCCEEEEEEECCHHHHHHHHHH-HHHHHHHH
T ss_pred EEeeeeccCCceeecCCCCEEEEEeecCCCCceEEEEEEECCHHHHHHHHH-HHHHHHHH
Confidence 589999999999999999999999 3 23789999999999999975 45555444
No 13
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=98.26 E-value=3.2e-06 Score=55.50 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred CeEeeeeecCceeeeccCccee--ee-----eCC---eEEeeecCCHHHHHHHHHHHHHHhHhcCCCC
Q psy9215 1 VVINCVILKSLKYNQATSTFHQ--WR-----DNK---QVYGLNFSSKEDADSFARAMLYAVECNSPKL 58 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHq--Wr-----d~~---~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~ 58 (73)
|++|+.|.++|+|++....... |. |.+ ..|.|.|.++++|..|..+|..|.+.+..-.
T Consensus 58 v~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~~~ 125 (130)
T 1xke_A 58 VCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIP 125 (130)
T ss_dssp EEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred EEEecEeCCCcEEeecCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhccC
Confidence 5899999999999887655554 44 322 6799999999999999999999999887643
No 14
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=98.05 E-value=7.7e-06 Score=54.39 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=43.5
Q ss_pred CeEeeeeecCceeeeccCcceeeee------CCeEEeeecCCHHHHHHHHHHHHHHh
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWRD------NKQVYGLNFSSKEDADSFARAMLYAV 51 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWrd------~~~vyGL~F~s~~da~~F~~~~~~Al 51 (73)
|++|+.|.++|+|+++++++..|.- .-+.|.|.|.++++|..|...+.++.
T Consensus 69 v~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~~~~~~i~ 125 (138)
T 2y8g_A 69 LILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRIL 125 (138)
T ss_dssp EEEEEECCTTCCEEEEETTEEEEECCC--CCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred EEEeeEecCCceeecCCCCEEEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999983 23789999999999999986554443
No 15
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=97.86 E-value=1.5e-05 Score=52.50 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=42.3
Q ss_pred CeEeeeeecCceeeeccCcceeee-------eC---CeEEeeecCCHHHHHHHHHHHHHHh
Q psy9215 1 VVINCVILKSLKYNQATSTFHQWR-------DN---KQVYGLNFSSKEDADSFARAMLYAV 51 (73)
Q Consensus 1 VviNc~I~~gl~Ynkatp~FHqWr-------d~---~~vyGL~F~s~~da~~F~~~~~~Al 51 (73)
|++|+.|.++|+|++....-..|+ |. ...|.|.|.++++|..|..+|.+|.
T Consensus 72 v~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~ 132 (134)
T 1rrp_B 72 ICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ 132 (134)
T ss_dssp EEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EEEEeEecCCceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence 579999999999988765555665 22 2679999999999999999998875
No 16
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=96.70 E-value=0.0029 Score=44.59 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=46.5
Q ss_pred CeEeeeeecCceeeec--cCcceee---ee---CC---eEEeeecCCHHHHHHHHHHHHHHhHhcCC
Q psy9215 1 VVINCVILKSLKYNQA--TSTFHQW---RD---NK---QVYGLNFSSKEDADSFARAMLYAVECNSP 56 (73)
Q Consensus 1 VviNc~I~~gl~Ynka--tp~FHqW---rd---~~---~vyGL~F~s~~da~~F~~~~~~Ale~L~~ 56 (73)
|++|+.|.++|+|... +...-.| .| .. ..|-+.|.++++|..|...|..|.+.+..
T Consensus 98 V~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~ 164 (201)
T 1k5d_B 98 ICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEE 164 (201)
T ss_dssp EEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999865 5677788 33 12 45999999999999999999999987654
No 17
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=96.05 E-value=0.015 Score=38.70 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=43.0
Q ss_pred CeEeeeeecCceeeec--cCcceeee---e---CC---eEEeeecCCHHHHHHHHHHHHHHhHhc
Q psy9215 1 VVINCVILKSLKYNQA--TSTFHQWR---D---NK---QVYGLNFSSKEDADSFARAMLYAVECN 54 (73)
Q Consensus 1 VviNc~I~~gl~Ynka--tp~FHqWr---d---~~---~vyGL~F~s~~da~~F~~~~~~Ale~L 54 (73)
|++|..|.++|+|... ++.---|- | .. ..|-+.|.++++|..|...|..|.+.+
T Consensus 73 v~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n 137 (140)
T 4hat_B 73 ICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 137 (140)
T ss_dssp EEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeEecCCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 5799999999999875 33444563 3 22 469999999999999999999998764
No 18
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.032 Score=36.21 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=41.2
Q ss_pred CeEeeeeecCceeeec-cCcceeeee------C-----CeEEeeecCCHHHHHHHHHHHHHHhH
Q psy9215 1 VVINCVILKSLKYNQA-TSTFHQWRD------N-----KQVYGLNFSSKEDADSFARAMLYAVE 52 (73)
Q Consensus 1 VviNc~I~~gl~Ynka-tp~FHqWrd------~-----~~vyGL~F~s~~da~~F~~~~~~Ale 52 (73)
|++|..|.++|+|... ....--|.. . -..|=|.|.++++|..|...|..+.+
T Consensus 61 v~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 61 ILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp BSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 5799999999999886 344555653 1 24699999999999999999988754
No 19
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.036 Score=38.91 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=43.3
Q ss_pred CeEeeeeecCceeeec--cCcceeee---e---CC---eEEeeecCCHHHHHHHHHHHHHHhHhc
Q psy9215 1 VVINCVILKSLKYNQA--TSTFHQWR---D---NK---QVYGLNFSSKEDADSFARAMLYAVECN 54 (73)
Q Consensus 1 VviNc~I~~gl~Ynka--tp~FHqWr---d---~~---~vyGL~F~s~~da~~F~~~~~~Ale~L 54 (73)
|++|+.|.++|+|... +..---|. | .. ..|-|.|.++++|..|...|..|.+.+
T Consensus 124 V~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~n 188 (191)
T 3m1i_B 124 ICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 188 (191)
T ss_dssp EEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 5799999999999876 33444554 2 22 469999999999999999999998764
No 20
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=80.63 E-value=2.7 Score=27.33 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=37.7
Q ss_pred eeecCceeeeccCcceeeeeC-CeEEeeecCCHHHHHHHHHHHHHHhH
Q psy9215 6 VILKSLKYNQATSTFHQWRDN-KQVYGLNFSSKEDADSFARAMLYAVE 52 (73)
Q Consensus 6 ~I~~gl~Ynkatp~FHqWrd~-~~vyGL~F~s~~da~~F~~~~~~Ale 52 (73)
.|.+++.+ ...+.|--+|.. ..+||+=|-+++|.......|++-++
T Consensus 80 ~i~~~~~~-e~~~~~l~~r~~~~~i~GiWf~~~~d~~~i~~~l~~ll~ 126 (127)
T 2qkl_A 80 FINHPSNV-HLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLL 126 (127)
T ss_dssp EECSGGGE-EEETTEEEEEETTTEEEEEEESSTHHHHHHHHHHHHHTC
T ss_pred ecCCCceE-EEeCCEEEEEcCCCcEEEEEEEchHHHHHHHHHHHHHHh
Confidence 47788888 577778899984 58999999999999988887776654
No 21
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=74.93 E-value=7 Score=24.02 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=37.4
Q ss_pred ecCceeeeccCc-ceeeeeCCeEEeeecCCH------HHHHHHHHHHHHHhHhc
Q psy9215 8 LKSLKYNQATST-FHQWRDNKQVYGLNFSSK------EDADSFARAMLYAVECN 54 (73)
Q Consensus 8 ~~gl~Ynkatp~-FHqWrd~~~vyGL~F~s~------~da~~F~~~~~~Ale~L 54 (73)
.||+.||+-... .-+|.++.++.--.|..+ ++|+..+..++..||.-
T Consensus 8 ~pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~yGf~~e~Ak~~AIef~k~le~~ 61 (77)
T 3igm_B 8 YPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFNMDKEKARLAAVEFMKTVENN 61 (77)
T ss_dssp STTEEEETTTTEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCcEEeecCCceEEEEEecCCeEeeeeechhhcCcCHHHHHHHHHHHHHHHHhc
Confidence 579999988766 458999988888888887 68888888777777653
No 22
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=74.90 E-value=7.6 Score=25.35 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=37.3
Q ss_pred eeecCceeeeccCcceeeeeCC-eEEeeecCCHHHHHHHHHHHHHHhH
Q psy9215 6 VILKSLKYNQATSTFHQWRDNK-QVYGLNFSSKEDADSFARAMLYAVE 52 (73)
Q Consensus 6 ~I~~gl~Ynkatp~FHqWrd~~-~vyGL~F~s~~da~~F~~~~~~Ale 52 (73)
.|.+++.+ ..++.|--+|..+ .+|||=|-+++|......-+.+-++
T Consensus 86 ~l~~~~~~-e~~~~~li~r~~~~~I~GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 86 PITGSLEL-QSQPPFLLYRNERSRIRGFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp ECCSSCEE-EEETTEEEEEEGGGEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EcCCCcEE-EeeCCEEEEECCCCcEEEEEecChHHHHHHHHHHHHHHh
Confidence 46778887 6677788899854 7899999999999988887776654
No 23
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=62.07 E-value=9.2 Score=21.70 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=31.9
Q ss_pred CCeEEeeecCCHHHHHHHHHHHHHHhHhcCCCCccch
Q psy9215 26 NKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWTR 62 (73)
Q Consensus 26 ~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~~~~ 62 (73)
+.+.|=|.-.|++|...-..+++.|+..+.+....|+
T Consensus 67 ~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~~~~~~pr 103 (103)
T 3rcp_A 67 GEQHFYMKAVNAAERQRWLVALGSSKASLTDTRLVPR 103 (103)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHTTSCCCCCCCCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3578889999999999999999999999888776664
No 24
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=61.07 E-value=4.8 Score=25.84 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=14.7
Q ss_pred eeecCCHHHHHHHHHH
Q psy9215 31 GLNFSSKEDADSFARA 46 (73)
Q Consensus 31 GL~F~s~~da~~F~~~ 46 (73)
.|.|.|+|+|-+|++.
T Consensus 63 ~L~F~skE~AiayAek 78 (108)
T 2lju_A 63 CLSFTTRELAIAYAVA 78 (108)
T ss_dssp CEEESSHHHHHHHHHH
T ss_pred eEecCCHHHHHHHHHH
Confidence 7999999999999874
No 25
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=58.56 E-value=7.4 Score=24.90 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=15.3
Q ss_pred EeeecCCHHHHHHHHHH
Q psy9215 30 YGLNFSSKEDADSFARA 46 (73)
Q Consensus 30 yGL~F~s~~da~~F~~~ 46 (73)
-.|.|.|+|+|-+|++.
T Consensus 54 v~L~F~skE~AiayAek 70 (106)
T 2jya_A 54 VKLTFETQEQAEAYAQR 70 (106)
T ss_dssp EEEEESSHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHHHH
Confidence 48999999999999874
No 26
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=55.48 E-value=40 Score=21.96 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=33.0
Q ss_pred eEeeeeecCceeeeccCcceeeeeCCeEEeeecCCHHHHHHHHHHHHHHh
Q psy9215 2 VINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAV 51 (73)
Q Consensus 2 viNc~I~~gl~Ynkatp~FHqWrd~~~vyGL~F~s~~da~~F~~~~~~Al 51 (73)
+.+|.|.++-.+-++-.+=+=---...--=|.|.|++|...|...+..+.
T Consensus 57 l~ef~V~~~TEc~rVGk~S~litlg~~slLl~Fas~~d~~~F~~~l~k~~ 106 (117)
T 2oqb_A 57 VFKCSVSRETECSRVGRQSFIITLGCNSVLIQFATPHDFCSFYNILKTCR 106 (117)
T ss_dssp EEEEEEETTSEEEEETTTEEEEEETTEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCccceeecCeEEEEEECCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45677777766666555444444433334589999999999988765543
No 27
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=33.98 E-value=60 Score=17.84 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=24.6
Q ss_pred eEEeeecCCHHHHHHHHHHHHHHhHhcC
Q psy9215 28 QVYGLNFSSKEDADSFARAMLYAVECNS 55 (73)
Q Consensus 28 ~vyGL~F~s~~da~~F~~~~~~Ale~L~ 55 (73)
+.|=|.-.|++|+..-..+++.|+..|.
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ls 108 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKDLS 108 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 5677889999999999999999998763
No 28
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.86 E-value=67 Score=18.04 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCeEEeeecCCHHHHHHHHHHHHHHhHhcCCCC
Q psy9215 26 NKQVYGLNFSSKEDADSFARAMLYAVECNSPKL 58 (73)
Q Consensus 26 ~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~ 58 (73)
..+.|=|...|++|+..-..+|+.|+..+.++.
T Consensus 77 ~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~~ 109 (115)
T 2dn6_A 77 FDKTFEISASDKKKKQEWIQAIHSTIHLLKLGS 109 (115)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 346788999999999999999999998876544
No 29
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.30 E-value=54 Score=19.16 Aligned_cols=37 Identities=8% Similarity=-0.090 Sum_probs=30.2
Q ss_pred CCeEEeeecCCHHHHHHHHHHHHHHhHhcCCCCccch
Q psy9215 26 NKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWTR 62 (73)
Q Consensus 26 ~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~~~~ 62 (73)
..+.|=|.-.|++|+..-..+++.|+....+..|.+.
T Consensus 78 ~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~~p~~~ 114 (119)
T 2dhk_A 78 PSRVITLKAATKQAMLYWLQQLQMKRWEFHNSPPAPS 114 (119)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHHHHHHHSCSSSS
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3567889999999999999999999988876655443
No 30
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=27.04 E-value=95 Score=17.86 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=25.9
Q ss_pred CCeEEeeecCCHHHHHHHHHHHHHHhHhcCC
Q psy9215 26 NKQVYGLNFSSKEDADSFARAMLYAVECNSP 56 (73)
Q Consensus 26 ~~~vyGL~F~s~~da~~F~~~~~~Ale~L~~ 56 (73)
.++.|=|...|++|+..-..+++.|++.+..
T Consensus 86 ~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 116 (126)
T 1fao_A 86 PFRTFYLCAKTGVEADEWIKILRWKLSQIRK 116 (126)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999988653
No 31
>4emo_A Sharpin; pleckstrin homology (PH) domain, lubac, SIPL1, linear ubiqui HOIL-1L, HOIP, protein binding; 2.00A {Homo sapiens}
Probab=24.54 E-value=1.6e+02 Score=19.48 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred EeeeeecCceeeeccCcceeeeeC---CeEEeeecCCHHHHHHHHHHHHHHhHh
Q psy9215 3 INCVILKSLKYNQATSTFHQWRDN---KQVYGLNFSSKEDADSFARAMLYAVEC 53 (73)
Q Consensus 3 iNc~I~~gl~Ynkatp~FHqWrd~---~~vyGL~F~s~~da~~F~~~~~~Ale~ 53 (73)
++..|. .+.|+--.|.=|.-+-. --.+.|+|..++||...+.-++.|+..
T Consensus 72 ~Ew~Le-SV~ytvrgP~~hELqpp~~gpg~lsl~F~~~qeAQrWA~lv~~a~~e 124 (129)
T 4emo_A 72 LEWPLE-SVSYTIRGPTQHELQPPPGGPGTLSMHFLNPQEAQRWAVLVRGATVE 124 (129)
T ss_dssp EEEEGG-GSEEEEEETTEEEEECCTTSSCCEEEEESSHHHHHHHHHHHHHHCC-
T ss_pred eEeecc-eeEEEecCcccccccCCCCCCCeEEEeeCCHHHHHHHHHHHHhhhcc
Confidence 344433 67888888999988883 256999999999999998888877643
No 32
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=23.87 E-value=72 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=27.5
Q ss_pred eeeeccCcceeeee--C-C----eEEeeecCCHHHHHHHHHHH
Q psy9215 12 KYNQATSTFHQWRD--N-K----QVYGLNFSSKEDADSFARAM 47 (73)
Q Consensus 12 ~Ynkatp~FHqWrd--~-~----~vyGL~F~s~~da~~F~~~~ 47 (73)
.|..+|-+| .|-. . + .+-=+.|.|+++...|...+
T Consensus 27 lf~~~STTW-~w~~~~~~~~~g~armlv~F~s~~QR~~FL~tV 68 (85)
T 2bop_A 27 RYENCTTTW-FTVADNGAERQGQAQILITFGSPSQRQDFLKHV 68 (85)
T ss_dssp GCSEECCCE-EEECSSTTCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred cceeEccEE-EEeCCCCCCcCCccEEEEEECCHHHHHHHHhcC
Confidence 477899999 8874 2 1 35668999999999998764
No 33
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=23.32 E-value=42 Score=17.94 Aligned_cols=30 Identities=37% Similarity=0.677 Sum_probs=21.8
Q ss_pred eccCcceeeee-CCeEEe------eecCCHHHHHHHH
Q psy9215 15 QATSTFHQWRD-NKQVYG------LNFSSKEDADSFA 44 (73)
Q Consensus 15 katp~FHqWrd-~~~vyG------L~F~s~~da~~F~ 44 (73)
+...+|.-|.+ ..+|-| -.|.|.+||..|.
T Consensus 10 ~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 10 RETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFL 46 (47)
T ss_dssp SSCEEEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHH
T ss_pred CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHh
Confidence 44678888877 234544 4689999999985
No 34
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=21.31 E-value=39 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEeeecCCHHHHHHHHHHHHHHhHhcCCCCccchhhhhhhhhhc
Q psy9215 29 VYGLNFSSKEDADSFARAMLYAVECNSPKLKWTRHIRDQEETAL 72 (73)
Q Consensus 29 vyGL~F~s~~da~~F~~~~~~Ale~L~~~~~~~~~~~~~~~~~~ 72 (73)
+|+++=...++-+.-+..++.|++.|+-....++++.+-|..|+
T Consensus 394 ~~~~~~~~q~~vd~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 437 (442)
T 2yl5_A 394 NYNLNRNKQAELDTLVANLKAALQGLKPAVTHSGSLDENEVAAN 437 (442)
T ss_dssp CSCCBGGGHHHHHHHHHHHHHHHTTC------------------
T ss_pred hccCChhhHHHHHHHHHHHHHHHHhCcchhccCCCcchhHHHhh
Confidence 48888888888889999999999999665666777766666554
No 35
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=20.21 E-value=56 Score=17.86 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=22.4
Q ss_pred eccCcceeeeeC-CeEEe------eecCCHHHHHHHHHH
Q psy9215 15 QATSTFHQWRDN-KQVYG------LNFSSKEDADSFARA 46 (73)
Q Consensus 15 katp~FHqWrd~-~~vyG------L~F~s~~da~~F~~~ 46 (73)
+...+|.-|.+- .+|-| -.|.+.+||..|..+
T Consensus 12 ~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 12 RKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp SSCEEESSHHHHHHHHTTCTTCEEEEESSHHHHHHHHHC
T ss_pred CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHHHh
Confidence 446778888762 23333 479999999999753
Done!