RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9215
(73 letters)
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR Q7Z699;
2.45A {Homo sapiens}
Length = 130
Score = 85.5 bits (211), Expect = 1e-23
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ C++ K L YN+ T TFH W+ + + +GL F S DA +F R + A+E
Sbjct: 69 VVLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 120
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 85.0 bits (210), Expect = 1e-23
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ C + K L Y +A TFH W+ + + +GL F S DA +F R + A+E
Sbjct: 71 VVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIE 122
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 83.9 bits (207), Expect = 3e-23
Identities = 34/52 (65%), Positives = 40/52 (76%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I++ +KYNQAT FHQWRD +QV+GLNF SKEDA FA M A+E
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALE 111
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 83.9 bits (207), Expect = 4e-23
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ CV+ + L YN+ T TFH WR + +GL F S DA +F R + A+E
Sbjct: 62 VVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 113
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 79.4 bits (195), Expect = 3e-21
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVIN I+K LKYNQAT TFHQWRD +QVYGLNF+SKE+A +F+ AML+A+
Sbjct: 59 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALN 110
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
actin dynamics, contractIle protein; 1.80A {Mus
musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Length = 112
Score = 73.9 bits (181), Expect = 3e-19
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I K LKYNQAT TFHQWRD +QVYGLNF SKEDA+ FA AM++A+E
Sbjct: 58 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALE 109
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 74.5 bits (182), Expect = 6e-19
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFARAMLYAVEC 53
+IN I ++ + + + F QW D++ VYGL FSS+ FA E
Sbjct: 60 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 114
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold,
signaling protein; 1.70A {Rattus norvegicus} SCOP:
b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Length = 120
Score = 71.7 bits (175), Expect = 2e-18
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNK--QVYGLNFSSKEDADSFARAMLYAVEC 53
+IN I ++ + + + F QW D++ VYGL FSS+ FA E
Sbjct: 55 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 109
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 51.3 bits (122), Expect = 5e-10
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPK 57
++ + + YN FH + + LNF+++E+A F +A+ + K
Sbjct: 107 LLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 163
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome
protein interacting protein...; polyproline,
protein-protein complex; NMR {Rattus norvegicus} SCOP:
b.55.1.4
Length = 152
Score = 50.8 bits (121), Expect = 7e-10
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVECNSPK 57
++ + + YN FH + + LNF+++E+A F +A+ + K
Sbjct: 90 LLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 146
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain,
nucleoporin, structural genomics, PSI-2, protein
structure initiative; 2.26A {Ashbya gossypii} PDB:
3oan_A
Length = 130
Score = 37.2 bits (86), Expect = 6e-05
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 1 VVINCVILKSLKY------NQATSTFHQWRDNK-QVYGLNFSSKEDADSFARAMLYAVEC 53
V++N ++KS KY N+ + D K + + + K D A+ A +
Sbjct: 62 VLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQA 121
Query: 54 NSPKLK 59
Sbjct: 122 MEGHHH 127
>2lju_A Putative oxidoreductase; structural genomics, seattle structural
GENO center for infectious disease, ssgcid; NMR
{Ehrlichia chaffeensis}
Length = 108
Score = 27.4 bits (61), Expect = 0.23
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 24 RDNKQVYGLNFSSKEDADSFARAMLYAVECNSPKLK 59
D KQ L+F+++E A ++A A +
Sbjct: 56 HDTKQQVCLSFTTRELAIAYAVAHKIDYTVLQDNPR 91
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with
unknown function ATU1810, ontario centre for ST
proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Length = 106
Score = 27.3 bits (61), Expect = 0.26
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 24 RDNKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWTRHIR 65
D KQ L F ++E A+++A+ PK +
Sbjct: 48 SDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPK---EATRK 86
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel,
HIV-inactivating, carbohydrate binding protein; 1.60A
{Myxococcus xanthus} PDB: 4fbv_A*
Length = 267
Score = 27.0 bits (59), Expect = 0.51
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 24 RDNKQVYGLNFSSKEDADSFARAMLYAVEC 53
RD + V L+ S + + M Y E
Sbjct: 28 RDKQNVVALDIKSDDGGKTLKGTMTYNGEG 57
>3obl_A Lectin; novel beta barrel fold, high mannose glycan binding
protein; HET: CXS; 1.20A {Planktothrix agardhii} PDB:
3s5v_A 3s5x_A* 3s60_A
Length = 132
Score = 26.2 bits (57), Expect = 0.68
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 24 RDNKQVYGLNFSSKEDADSFARAMLYAVE 52
R+N+ V +N S +D + M YA E
Sbjct: 94 RENQNVVAINVESGDDGQTLNGTMTYAGE 122
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear
protein), small GTPase, nuclear transport; HET: GNP;
2.96A {Homo sapiens} SCOP: b.55.1.3
Length = 134
Score = 26.5 bits (58), Expect = 0.70
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 10/57 (17%)
Query: 1 VVINCVILKSLKYNQATSTFHQWR---------DNKQV-YGLNFSSKEDADSFARAM 47
+ N I +K + + K + F + E+A F
Sbjct: 72 ICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKF 128
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH)
domain, phosphotyrosine-binding (PTB) domain, protein
transport; NMR {Homo sapiens} SCOP: b.55.1.3
Length = 130
Score = 25.4 bits (55), Expect = 1.4
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 16/73 (21%)
Query: 1 VVINCVILKSLKYNQATSTFHQWR---------DNKQV-YGLNFSSKEDADSFARAM--- 47
V N I ++ + + W D K F + E A+ F +
Sbjct: 58 VCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEEC 117
Query: 48 ---LYAVECNSPK 57
L + +PK
Sbjct: 118 QRLLLDIPLQTPK 130
>4fbo_A Pseudomonas fluorescens agglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.70A {Pseudomonas
fluorescens}
Length = 133
Score = 25.4 bits (55), Expect = 1.7
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 22 QW----RDNKQVYGLNFSSKEDADSFARAMLYAVE 52
+W RDN+ V L+ +S + + + YA E
Sbjct: 89 KWVIGGRDNQNVIALSVTSSDGGKNLSGTNTYANE 123
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 25.0 bits (54), Expect = 2.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 25 DNKQVYGLNFSSKEDADSFARAMLYAVECNSPKLKWTRHIRDQEETAL 72
VYG F + D AR +L A+E + KL + + ++ ET L
Sbjct: 623 IASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVHKEVAERYETKL 670
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.128 0.389
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,026,233
Number of extensions: 41866
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 20
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)