RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9215
(73 letters)
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 78.0 bits (192), Expect = 5e-21
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDN--KQVYGLNFSSKEDADSFARAMLYAVEC 53
+IN I ++ + + + F QW D+ VYGL FSS+ FA E
Sbjct: 57 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 111
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing
protein 1, Spred-1 {Western clawed frog (Xenopus
tropicalis) [TaxId: 8364]}
Length = 114
Score = 74.5 bits (183), Expect = 5e-20
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VV+ CV+ + L YN+ T TFH WR + +GL F S DA +F R + A+E
Sbjct: 58 VVLECVLRRDLVYNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAIE 109
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 59.6 bits (144), Expect = 4e-14
Identities = 34/52 (65%), Positives = 40/52 (76%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I++ +KYNQAT FHQWRD +QV+GLNF SKEDA FA M A+E
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALE 111
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 58.4 bits (141), Expect = 1e-13
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAMLYAVE 52
VVINC I K LKYNQAT TFHQWRD +QVYGLNF SKEDA+ FA AM++A+E
Sbjct: 57 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALE 108
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 55.6 bits (134), Expect = 2e-12
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1 VVINCVILKSLKYNQATSTFHQWRDNKQVYGLNFSSKEDADSFARAM 47
++ + + YN FH + + LNF+++E+A F +A+
Sbjct: 60 LLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAV 106
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 33.7 bits (77), Expect = 6e-04
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 11/70 (15%)
Query: 1 VVINCVILKSLKYNQATSTFHQWR-----------DNKQVYGLNFSSKEDADSFARAMLY 49
+ N I ++ + W ++ + F + E+A F
Sbjct: 77 ICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEE 136
Query: 50 AVECNSPKLK 59
+ + K
Sbjct: 137 CRKEIEEREK 146
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 118
Score = 31.1 bits (70), Expect = 0.004
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 10/57 (17%)
Query: 1 VVINCVILKSLKYNQATSTFHQWR----------DNKQVYGLNFSSKEDADSFARAM 47
V N I ++ + + W + F + E A+ F +
Sbjct: 52 VCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKF 108
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 29.0 bits (65), Expect = 0.022
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 10/57 (17%)
Query: 1 VVINCVILKSLKYNQATSTFHQWR---------DNKQV-YGLNFSSKEDADSFARAM 47
+ N I +K + + K + F + E+A F
Sbjct: 72 ICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKF 128
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 24.1 bits (51), Expect = 1.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 39 DADSFARAMLYAVECNSPKLKW 60
+ + A L A+ P L++
Sbjct: 232 NPEEVAEVFLTALRAPKPTLRY 253
>d2hpua1 d.357.1.1 (A:35-160) NosL {Achromobacter cycloclastes
[TaxId: 223]}
Length = 126
Score = 23.7 bits (51), Expect = 2.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 34 FSSKEDADSFARA 46
FSS+++A +F A
Sbjct: 83 FSSRDEAAAFVLA 95
>d2alaa2 f.10.1.1 (A:1-292) Fusion glycoprotein E1 {Semliki forest
virus [TaxId: 11033]}
Length = 292
Score = 23.3 bits (50), Expect = 3.5
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 13 YNQATSTFHQWRDNK 27
Y Q S F W K
Sbjct: 233 YTQTPSGFKYWLKEK 247
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase
subunit beta, DsrB {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 119
Score = 22.6 bits (49), Expect = 4.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 48 LYAVECNSPKLKWTRHIRD 66
+Y V +P+L +R+
Sbjct: 48 IYVVRFGTPRLLSIYTVRE 66
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 22.8 bits (48), Expect = 5.6
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 18 STFHQWRDNKQVYGLNFSSKEDADSFARAMLYAV 51
+H W + K++ N + + +AR++ + V
Sbjct: 176 LFYHAWDEAKKMPWANEETGCSPEFWARSIGWYV 209
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.128 0.389
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 252,910
Number of extensions: 8090
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 14
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.8 bits)