Query psy9216
Match_columns 125
No_of_seqs 178 out of 1120
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15049 L-asparagine permease 99.7 2.5E-17 5.4E-22 131.2 8.7 83 40-125 24-106 (499)
2 TIGR00911 2A0308 L-type amino 99.7 8.3E-17 1.8E-21 128.0 9.2 87 38-125 36-122 (501)
3 TIGR03428 ureacarb_perm permea 99.7 6.3E-17 1.4E-21 128.0 7.5 89 34-125 3-92 (475)
4 KOG1287|consensus 99.7 3.4E-17 7.4E-22 128.7 3.9 88 37-125 5-92 (479)
5 PRK11387 S-methylmethionine tr 99.7 2.4E-16 5.2E-21 124.6 7.9 83 40-124 10-92 (471)
6 PRK10836 lysine transporter; P 99.7 3.2E-16 6.9E-21 124.4 8.6 84 39-124 10-93 (489)
7 PRK10249 phenylalanine transpo 99.7 2.5E-16 5.4E-21 124.2 7.1 84 39-125 16-99 (458)
8 PRK11357 frlA putative fructos 99.6 3.6E-16 7.7E-21 122.6 7.8 86 39-125 3-88 (445)
9 PRK10238 aromatic amino acid t 99.6 5.8E-16 1.2E-20 122.1 7.5 84 38-124 6-89 (456)
10 PRK10580 proY putative proline 99.6 6.6E-16 1.4E-20 121.6 7.6 86 37-125 2-87 (457)
11 PRK10746 putative transport pr 99.6 9.5E-16 2.1E-20 121.1 7.2 85 38-125 4-88 (461)
12 TIGR01773 GABAperm gamma-amino 99.6 1.4E-15 3E-20 119.5 7.9 84 39-125 7-90 (452)
13 KOG1289|consensus 99.6 5.9E-16 1.3E-20 122.6 5.5 95 29-125 33-128 (550)
14 PRK10644 arginine:agmatin anti 99.6 2.3E-15 5.1E-20 118.1 8.1 83 39-125 3-85 (445)
15 TIGR00906 2A0303 cationic amin 99.6 2.3E-15 4.9E-20 121.5 7.2 84 39-125 23-107 (557)
16 TIGR00907 2A0304 amino acid pe 99.6 5.3E-15 1.2E-19 117.0 7.6 88 35-124 3-91 (482)
17 PRK10655 potE putrescine trans 99.6 7.2E-15 1.6E-19 115.0 7.4 81 41-125 3-83 (438)
18 PRK10435 cadB lysine/cadaverin 99.6 7.5E-15 1.6E-19 115.1 6.8 80 41-125 2-81 (435)
19 TIGR00905 2A0302 transporter, 99.6 1.4E-14 2.9E-19 114.7 7.9 83 41-125 4-87 (473)
20 PRK11021 putative transporter; 99.5 2E-14 4.4E-19 111.7 7.8 77 46-125 1-77 (410)
21 TIGR00913 2A0310 amino acid pe 99.5 1.7E-14 3.7E-19 114.0 7.5 82 43-125 1-82 (478)
22 TIGR00908 2A0305 ethanolamine 99.5 9.4E-14 2E-18 108.8 7.8 85 38-125 1-85 (442)
23 TIGR03810 arg_ornith_anti argi 99.5 1.1E-13 2.4E-18 109.4 7.3 79 44-124 1-80 (468)
24 PRK11049 D-alanine/D-serine/gl 99.5 1.6E-13 3.4E-18 108.6 7.2 83 39-124 15-97 (469)
25 COG0833 LysP Amino acid transp 99.4 6.2E-13 1.3E-17 105.7 7.4 81 41-123 41-121 (541)
26 TIGR00909 2A0306 amino acid tr 99.4 5E-13 1.1E-17 104.2 6.6 80 42-124 1-80 (429)
27 KOG1286|consensus 99.4 1.1E-13 2.4E-18 111.5 1.4 85 39-125 25-110 (554)
28 PRK10197 gamma-aminobutyrate t 99.3 2.2E-12 4.9E-17 101.5 4.8 69 54-125 2-70 (446)
29 TIGR00930 2a30 K-Cl cotranspor 99.2 4.1E-11 8.8E-16 101.9 7.2 82 41-124 73-156 (953)
30 PRK15238 inner membrane transp 99.2 6E-11 1.3E-15 94.5 7.4 78 42-125 5-84 (496)
31 PHA02764 hypothetical protein; 99.2 9.1E-11 2E-15 88.4 6.6 85 39-125 7-91 (399)
32 COG1113 AnsP Gamma-aminobutyra 99.1 1E-10 2.2E-15 91.7 6.5 85 38-125 7-91 (462)
33 COG0531 PotE Amino acid transp 99.1 1.6E-10 3.5E-15 90.3 7.3 84 38-125 6-90 (466)
34 PF13520 AA_permease_2: Amino 99.0 2.8E-10 6E-15 88.5 5.3 74 46-124 1-75 (426)
35 TIGR00912 2A0309 spore germina 98.8 1.7E-08 3.7E-13 77.2 6.4 76 45-124 2-77 (359)
36 TIGR00910 2A0307_GadC glutamat 98.7 1.3E-08 2.9E-13 81.5 5.0 75 43-125 3-80 (507)
37 TIGR03813 put_Glu_GABA_T putat 98.7 2.2E-08 4.8E-13 79.4 5.3 75 44-125 1-76 (474)
38 PF00324 AA_permease: Amino ac 98.6 9.8E-09 2.1E-13 81.4 1.6 72 52-125 3-74 (478)
39 TIGR00837 araaP aromatic amino 98.5 9.7E-08 2.1E-12 73.6 3.3 69 53-124 4-72 (381)
40 PF03845 Spore_permease: Spore 97.3 0.0013 2.8E-08 49.7 7.1 75 45-124 1-75 (320)
41 PF03222 Trp_Tyr_perm: Tryptop 97.1 0.002 4.4E-08 50.5 6.8 78 45-125 2-79 (394)
42 COG0814 SdaC Amino acid permea 97.0 0.0039 8.5E-08 49.2 8.0 83 41-125 4-86 (415)
43 PRK10483 tryptophan permease; 96.9 0.004 8.7E-08 49.2 7.0 81 42-125 7-87 (414)
44 PRK09664 tryptophan permease T 96.8 0.0038 8.1E-08 49.4 6.1 76 47-125 10-85 (415)
45 TIGR00796 livcs branched-chain 96.5 0.0051 1.1E-07 48.1 5.1 63 55-124 4-67 (378)
46 TIGR00814 stp serine transport 96.5 0.0079 1.7E-07 47.3 5.7 68 52-125 9-80 (397)
47 PF01235 Na_Ala_symp: Sodium:a 96.4 0.018 3.8E-07 45.6 7.6 82 41-125 14-102 (416)
48 KOG1303|consensus 96.3 0.034 7.3E-07 44.4 8.8 82 41-124 33-118 (437)
49 PRK13629 threonine/serine tran 95.6 0.063 1.4E-06 42.9 7.3 71 53-125 26-96 (443)
50 PRK15132 tyrosine transporter 95.5 0.048 1E-06 43.0 6.3 76 47-125 4-79 (403)
51 PTZ00206 amino acid transporte 94.0 0.53 1.2E-05 37.7 8.7 74 47-124 61-134 (467)
52 COG1115 AlsT Na+/alanine sympo 93.9 0.46 1E-05 38.0 8.0 80 41-125 58-146 (452)
53 TIGR00835 agcS amino acid carr 93.5 0.46 1E-05 37.9 7.5 78 44-125 45-130 (425)
54 PF01490 Aa_trans: Transmembra 93.0 0.15 3.2E-06 39.3 4.1 80 44-125 1-82 (409)
55 PLN03074 auxin influx permease 91.3 1.7 3.7E-05 35.0 8.3 79 45-125 45-134 (473)
56 KOG1305|consensus 89.6 2.6 5.6E-05 33.5 7.8 77 44-124 4-80 (411)
57 PRK11375 allantoin permease; P 75.7 35 0.00075 27.7 9.1 82 40-124 21-102 (484)
58 KOG1304|consensus 74.8 44 0.00095 27.1 10.8 35 42-77 43-77 (449)
59 PF02133 Transp_cyt_pur: Perme 68.8 23 0.0005 27.8 6.5 81 41-124 4-84 (440)
60 COG3949 Uncharacterized membra 66.8 20 0.00043 28.0 5.5 71 52-125 9-80 (349)
61 TIGR00800 ncs1 NCS1 nucleoside 62.5 45 0.00098 26.4 7.1 82 40-124 8-89 (442)
62 KOG2082|consensus 62.3 6.6 0.00014 34.0 2.4 61 60-123 129-191 (1075)
63 PRK11017 codB cytosine permeas 54.3 69 0.0015 25.2 6.8 40 85-124 45-84 (404)
64 PF04156 IncA: IncA protein; 52.5 46 0.00099 23.1 5.1 19 48-66 6-25 (191)
65 PF12666 PrgI: PrgI family pro 48.7 61 0.0013 19.8 4.8 29 42-70 13-41 (93)
66 COG1953 FUI1 Cytosine/uracil/t 45.0 1.4E+02 0.0031 24.6 7.3 34 40-73 35-68 (497)
67 TIGR00813 sss transporter, SSS 44.8 1.1E+02 0.0023 23.8 6.5 77 43-123 2-78 (407)
68 PF07937 DUF1686: Protein of u 41.7 27 0.00059 24.8 2.4 19 42-60 86-104 (185)
69 PF11023 DUF2614: Protein of u 33.4 1.4E+02 0.003 19.5 5.2 18 85-102 43-60 (114)
70 PF11293 DUF3094: Protein of u 31.8 40 0.00088 19.0 1.7 28 38-65 20-47 (55)
71 KOG4684|consensus 31.6 1.2E+02 0.0025 22.4 4.4 15 103-117 232-246 (275)
72 PF11947 DUF3464: Protein of u 29.1 1E+02 0.0023 21.2 3.7 54 59-112 74-130 (153)
73 PF00474 SSF: Sodium:solute sy 26.9 2.1E+02 0.0045 22.2 5.5 34 43-76 5-38 (406)
74 TIGR03648 Na_symport_lg probab 26.8 3.6E+02 0.0078 22.1 7.7 76 43-123 31-107 (552)
75 PF09788 Tmemb_55A: Transmembr 26.1 95 0.0021 23.3 3.2 31 61-94 212-242 (256)
76 COG3768 Predicted membrane pro 23.6 2.8E+02 0.006 21.7 5.4 62 40-103 55-117 (350)
77 PF13194 DUF4010: Domain of un 21.0 3.3E+02 0.0071 19.6 7.1 64 39-105 116-179 (211)
No 1
>PRK15049 L-asparagine permease; Provisional
Probab=99.72 E-value=2.5e-17 Score=131.24 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=77.2
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF 119 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 119 (125)
+++||+++.+++.+++++.+||+|+|.+++..+..+|+. .+++|+++++++++++++++||++++|.+||.| .|+++
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~--~il~~li~~i~~~~v~~slaELas~~P~aGg~y-~y~~~ 100 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA--LALVYLICGLFSFFILRALGELVLHRPSSGSFV-SYARE 100 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHH
Confidence 459999999999999999999999999999999988874 567899999999999999999999999999997 99999
Q ss_pred hhCCCC
Q psy9216 120 GSGGWW 125 (125)
Q Consensus 120 ~~G~~~ 125 (125)
.+|+++
T Consensus 101 ~~G~~~ 106 (499)
T PRK15049 101 FLGEKA 106 (499)
T ss_pred HhCcHh
Confidence 999863
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.69 E-value=8.3e-17 Score=127.97 Aligned_cols=87 Identities=52% Similarity=0.790 Sum_probs=79.9
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
+++++||+++.+++++++++.++|+|+|..++.++..+|+.|..++.|++++++.++.+++++||++++|++||.| .|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y-~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEY-NYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh-hhH
Confidence 4567999999999999999999999999999998888887765667899999999999999999999999999997 999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+++
T Consensus 115 ~~~~g~~~ 122 (501)
T TIGR00911 115 LEVFGPLL 122 (501)
T ss_pred HhHhCCHH
Confidence 99999863
No 3
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.69 E-value=6.3e-17 Score=128.00 Aligned_cols=89 Identities=16% Similarity=0.046 Sum_probs=81.3
Q ss_pred CCCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q psy9216 34 NVPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGA 112 (125)
Q Consensus 34 ~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~ 112 (125)
.+.+++|||||+++.++.++++++.+ +++|++.+++..+...|+. .++.|+++++.+++++++++||++++|++||+
T Consensus 3 ~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~--~~~~~li~~i~~l~~als~aEL~s~~P~aGG~ 80 (475)
T TIGR03428 3 QRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA--FFWTWPVVFVGQLLVALNFAELAARYPISGAI 80 (475)
T ss_pred hhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Confidence 35789999999999999999999986 8999999999988887763 66789999999999999999999999999999
Q ss_pred HhHhhHhhhCCCC
Q psy9216 113 AVNALDFGSGGWW 125 (125)
Q Consensus 113 y~~~~~~~~G~~~ 125 (125)
| +|+++.+|+++
T Consensus 81 Y-~~~~~~~g~~~ 92 (475)
T TIGR03428 81 Y-QWSRRMGGEVI 92 (475)
T ss_pred H-HHHHHHcCccc
Confidence 8 99999999864
No 4
>KOG1287|consensus
Probab=99.67 E-value=3.4e-17 Score=128.72 Aligned_cols=88 Identities=50% Similarity=0.868 Sum_probs=82.9
Q ss_pred CcccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216 37 DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA 116 (125)
Q Consensus 37 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 116 (125)
+++.++||+++++..+++.++.+||+|+|..|..++..+|+.|..++.|++++++++..++||+||++++|.+||.| .|
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~-ay 83 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDY-AY 83 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcch-hh
Confidence 34567899999999999999999999999999999999999998888899999999999999999999999999997 99
Q ss_pred hHhhhCCCC
Q psy9216 117 LDFGSGGWW 125 (125)
Q Consensus 117 ~~~~~G~~~ 125 (125)
+.++||+.+
T Consensus 84 i~~afg~~~ 92 (479)
T KOG1287|consen 84 ISEAFGPFP 92 (479)
T ss_pred HHHHhccch
Confidence 999999874
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.66 E-value=2.4e-16 Score=124.59 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=76.6
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF 119 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 119 (125)
++|||+++.+++++++++.+||+|+|..++..+..+|+.+ .+++|++++++.++++++++||++++|++||.| .|+++
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y-~y~~~ 87 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAFH-VYAAR 87 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence 4699999999999999999999999999999988888643 567899999999999999999999999999986 99999
Q ss_pred hhCCC
Q psy9216 120 GSGGW 124 (125)
Q Consensus 120 ~~G~~ 124 (125)
.+|++
T Consensus 88 ~~g~~ 92 (471)
T PRK11387 88 YLGPA 92 (471)
T ss_pred hcChH
Confidence 99985
No 6
>PRK10836 lysine transporter; Provisional
Probab=99.66 E-value=3.2e-16 Score=124.42 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=77.2
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
.+++||+++.++.+++++|.+||+|+|.+++..+..+|+. ..+++|+++++++++++++|+||++++|++||.| .|++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~-~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y-~y~~ 87 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPG-GALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFA-TYGQ 87 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHH
Confidence 4579999999999999999999999999999999988863 3577899999999999999999999999999997 9999
Q ss_pred hhhCCC
Q psy9216 119 FGSGGW 124 (125)
Q Consensus 119 ~~~G~~ 124 (125)
+.+|+.
T Consensus 88 ~~~g~~ 93 (489)
T PRK10836 88 NYVEEG 93 (489)
T ss_pred HHcChH
Confidence 998875
No 7
>PRK10249 phenylalanine transporter; Provisional
Probab=99.65 E-value=2.5e-16 Score=124.23 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=77.4
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
.+++||+++.+++..++++.+||+|+|.+++..+..+|+. .+++|++++++.++++++++||++++|.+||.| .|++
T Consensus 16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~--~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~-~y~~ 92 (458)
T PRK10249 16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA--VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFA-HFAY 92 (458)
T ss_pred chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHH
Confidence 3479999999999999999999999999999999888863 667899999999999999999999999999987 9999
Q ss_pred hhhCCCC
Q psy9216 119 FGSGGWW 125 (125)
Q Consensus 119 ~~~G~~~ 125 (125)
+.+|+++
T Consensus 93 ~~~g~~~ 99 (458)
T PRK10249 93 KYWGPFA 99 (458)
T ss_pred HHhChHH
Confidence 9999853
No 8
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.65 E-value=3.6e-16 Score=122.64 Aligned_cols=86 Identities=33% Similarity=0.400 Sum_probs=78.4
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
+++|||+++.++.++++++.++|+|+|..++.+....|+++..+++|++++++.++++++++||++++|.+||.| .|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y-~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADY-VYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCce-eeHH
Confidence 457999999999999999999999999999988877776655677899999999999999999999999999998 9999
Q ss_pred hhhCCCC
Q psy9216 119 FGSGGWW 125 (125)
Q Consensus 119 ~~~G~~~ 125 (125)
+.+|+++
T Consensus 82 ~~~g~~~ 88 (445)
T PRK11357 82 NAGSRPL 88 (445)
T ss_pred HhcCChh
Confidence 9999863
No 9
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.63 E-value=5.8e-16 Score=122.09 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=77.4
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
+..++||+++.++...++++.+||+|+|..++..+..+|+ + .++.|++++++.++++++++||++++|.+||.| .|+
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y-~~~ 82 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-G-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFS-HFA 82 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHH
Confidence 3447999999999999999999999999999999998886 3 677899999999999999999999999999987 999
Q ss_pred HhhhCCC
Q psy9216 118 DFGSGGW 124 (125)
Q Consensus 118 ~~~~G~~ 124 (125)
++.+|++
T Consensus 83 ~~~~g~~ 89 (456)
T PRK10238 83 YKYWGSF 89 (456)
T ss_pred HHHcCcH
Confidence 9999985
No 10
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.63 E-value=6.6e-16 Score=121.64 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=78.5
Q ss_pred CcccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216 37 DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA 116 (125)
Q Consensus 37 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 116 (125)
++++++||+++.+++++++++.+||+|+|..++.....+|+. .+++|++++++.++++++++||++++|.+||.| .|
T Consensus 2 ~~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~--~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y-~y 78 (457)
T PRK10580 2 ESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS--VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFS-RY 78 (457)
T ss_pred CCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HH
Confidence 345689999999999999999999999999999988887764 677899999999999999999999999999997 99
Q ss_pred hHhhhCCCC
Q psy9216 117 LDFGSGGWW 125 (125)
Q Consensus 117 ~~~~~G~~~ 125 (125)
+++.+|+++
T Consensus 79 ~~~~~G~~~ 87 (457)
T PRK10580 79 AQENLGPLA 87 (457)
T ss_pred HHHHcCcHH
Confidence 999999853
No 11
>PRK10746 putative transport protein YifK; Provisional
Probab=99.62 E-value=9.5e-16 Score=121.09 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=78.4
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
+++++||+++.+++..++++.+||+|+|..++..+..+|+. .+++|++++++.++++++++||++++|++||.| .|+
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~--~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~-~y~ 80 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS--VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFA-VYA 80 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHH
Confidence 45679999999999999999999999999999999988863 667899999999999999999999999999987 999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+++
T Consensus 81 ~~~~g~~~ 88 (461)
T PRK10746 81 HRYMSPFF 88 (461)
T ss_pred HHHhCcHH
Confidence 99999864
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.62 E-value=1.4e-15 Score=119.50 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=77.4
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
+.++||+++.+++.+++++.+||+|+|.+++..+..+|+. .+++|++++++.++++++++||++++|.+||.| .|++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~--~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~-~~~~ 83 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA--ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFS-TYAD 83 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHH
Confidence 4469999999999999999999999999999999888864 566899999999999999999999999999987 9999
Q ss_pred hhhCCCC
Q psy9216 119 FGSGGWW 125 (125)
Q Consensus 119 ~~~G~~~ 125 (125)
+.+|+++
T Consensus 84 ~~~g~~~ 90 (452)
T TIGR01773 84 DAIGRWA 90 (452)
T ss_pred HHhCcHH
Confidence 9999863
No 13
>KOG1289|consensus
Probab=99.61 E-value=5.9e-16 Score=122.61 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCCCCCCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9216 29 LVPGSNVPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC 107 (125)
Q Consensus 29 ~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P 107 (125)
|.+.+.+.++||++||++++|+.++++++.+ .-.|+-.+...-+...|+++ .++.|+++++..+|++++++|++|.+|
T Consensus 33 d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~-~vwgwlIa~~~~i~va~slaEl~Sa~P 111 (550)
T KOG1289|consen 33 DEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPT-LVWGWLIAGFFSICVALSLAELCSAMP 111 (550)
T ss_pred CHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHH-HHHHHHHHHHHHHHHHhHHHHHHhhCC
Confidence 3345667899999999999999999999988 44455554444444445432 455699999999999999999999999
Q ss_pred CCCchHhHhhHhhhCCCC
Q psy9216 108 HLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 108 ~~GG~y~~~~~~~~G~~~ 125 (125)
++||.| .|+...-+++|
T Consensus 112 tsGgLy-~waa~lap~k~ 128 (550)
T KOG1289|consen 112 TSGGLY-FWAAVLAPPKY 128 (550)
T ss_pred CCCcHH-HHHHHhcCcch
Confidence 999998 78777777664
No 14
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.60 E-value=2.3e-15 Score=118.10 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=73.7
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
.++++|+++++++++++++.+||+|+|..++.+... | ++.++.|+++++..++++++++||++++|++||+| .|++
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g--~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y-~~~~ 78 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-G--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSY-AYAR 78 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChh-HHHH
Confidence 345789999999999999999999999999886553 3 34667899999999999999999999999999998 9999
Q ss_pred hhhCCCC
Q psy9216 119 FGSGGWW 125 (125)
Q Consensus 119 ~~~G~~~ 125 (125)
+.+|+++
T Consensus 79 ~~~g~~~ 85 (445)
T PRK10644 79 RCFGPFL 85 (445)
T ss_pred HHcCchH
Confidence 9999863
No 15
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.59 E-value=2.3e-15 Score=121.51 Aligned_cols=84 Identities=23% Similarity=0.459 Sum_probs=74.9
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHH-hhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLK-NAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~-~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
+++|+|+++.+++++++++.++|+|+|..++.... .+|+. .+++|+++++.+++.+++|+||++++|.+||.| .|+
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~--~~ls~liagv~~l~~al~yaElas~~P~sGg~Y-~y~ 99 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA--IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAY-LYS 99 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcce-eeH
Confidence 34699999999999999999999999999988764 45643 566799999999999999999999999999998 999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+++
T Consensus 100 ~~~~G~~~ 107 (557)
T TIGR00906 100 YVTVGELW 107 (557)
T ss_pred HHHhCcHH
Confidence 99999863
No 16
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.58 E-value=5.3e-15 Score=117.04 Aligned_cols=88 Identities=20% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Q psy9216 35 VPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAA 113 (125)
Q Consensus 35 ~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y 113 (125)
+.+++++|||+++.++.++++++.+ ..+|++..........|+.+ .+++|++++++.++++++++||++++|++||+|
T Consensus 3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~-~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y 81 (482)
T TIGR00907 3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMS-IVWGWIIAGAGSICIALSLAELSSAYPTSGGQY 81 (482)
T ss_pred ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 4688999999999999999999966 34688887776666666642 566899999999999999999999999999997
Q ss_pred hHhhHhhhCCC
Q psy9216 114 VNALDFGSGGW 124 (125)
Q Consensus 114 ~~~~~~~~G~~ 124 (125)
.|+++.+|++
T Consensus 82 -~~~~~~~g~~ 91 (482)
T TIGR00907 82 -FWSAKLAPPR 91 (482)
T ss_pred -HHHHHhcccc
Confidence 9999999864
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.56 E-value=7.2e-15 Score=115.00 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=72.2
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
++||++++++.++++++.+||+|+|..++... ..|+. .++.|++++++.++++++++|+++++|.+||.| .|+++.
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~--~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y-~y~~~~ 78 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMG-GYAEYA 78 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchH-HHHHHH
Confidence 35789999999999999999999999988754 45543 567899999999999999999999999999997 999999
Q ss_pred hCCCC
Q psy9216 121 SGGWW 125 (125)
Q Consensus 121 ~G~~~ 125 (125)
+|+++
T Consensus 79 ~G~~~ 83 (438)
T PRK10655 79 FGKSG 83 (438)
T ss_pred cCcch
Confidence 99863
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.56 E-value=7.5e-15 Score=115.08 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=70.7
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+.+|++++++++++.++.+||+|+|.+|+... ..|+. .+++|+++++..++++++++||++++|.+||.| .|+++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~--~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y-~y~~~- 76 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPI-AYAGE- 76 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChh-HHHHH-
Confidence 46799999999999999999999999998864 45542 566799999999999999999999999999987 99999
Q ss_pred hCCCC
Q psy9216 121 SGGWW 125 (125)
Q Consensus 121 ~G~~~ 125 (125)
+|+++
T Consensus 77 ~g~~~ 81 (435)
T PRK10435 77 ISPAF 81 (435)
T ss_pred HCcHH
Confidence 78753
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.55 E-value=1.4e-14 Score=114.69 Aligned_cols=83 Identities=30% Similarity=0.470 Sum_probs=73.8
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCchHhHhhHh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICH-LSGAAVNALDF 119 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~ 119 (125)
+++|+++.++.++++++.++|+|+|..+.......|+ +..+++|++++++.++++++++|+++++|+ +||.| .|+++
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~-~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y-~y~~~ 81 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGP-GAVIIGWIITGVGMLALAFVFAILATKKPELDGGIY-AYARE 81 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChh-hhHHh
Confidence 3478999999999999999999999999987765553 335678999999999999999999999999 99997 99999
Q ss_pred hhCCCC
Q psy9216 120 GSGGWW 125 (125)
Q Consensus 120 ~~G~~~ 125 (125)
.+||++
T Consensus 82 ~~G~~~ 87 (473)
T TIGR00905 82 GFGPYI 87 (473)
T ss_pred Hccccc
Confidence 999874
No 20
>PRK11021 putative transporter; Provisional
Probab=99.54 E-value=2e-14 Score=111.71 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=71.7
Q ss_pred cChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 46 LGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 46 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
+++|+.+++.++.+||+|+|.+++.++..+|+. .+++|++++++.++++++++||++++|++||.| .|+++.+|+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~--~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y-~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN--SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPA-HFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HhHHHHhCchh
Confidence 578999999999999999999999999988864 677899999999999999999999999999997 99999999874
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.54 E-value=1.7e-14 Score=113.96 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=74.1
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
||+++.+++.+++++.+||+|+|.+++..+..+|+.+ .+++|++++++.++++++++||++++|++||+|+.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~-~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAG-LLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 6899999999999999999999999999998887542 466799999999999999999999999888888789999999
Q ss_pred CCC
Q psy9216 123 GWW 125 (125)
Q Consensus 123 ~~~ 125 (125)
+++
T Consensus 80 ~~~ 82 (478)
T TIGR00913 80 PAF 82 (478)
T ss_pred cHH
Confidence 853
No 22
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.48 E-value=9.4e-14 Score=108.82 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=72.6
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
+++++||+++.++.++++++.++| |.+......+...|+. ..++.|++++++.++++++++||++++|.+||.| .|+
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~-~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y-~~~ 77 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWG-GFVVATLLVATMYLTFCFSLAELSTMIPTAGGGY-GFA 77 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HHH
Confidence 367899999999999999999997 7777766656666653 2456799999999999999999999999999997 999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+++
T Consensus 78 ~~~~G~~~ 85 (442)
T TIGR00908 78 RRAFGPWG 85 (442)
T ss_pred HHHhCcHH
Confidence 99999863
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.47 E-value=1.1e-13 Score=109.37 Aligned_cols=79 Identities=34% Similarity=0.542 Sum_probs=71.2
Q ss_pred cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHhHhhHhhhC
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLS-GAAVNALDFGSG 122 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~~G 122 (125)
|++++++++++.++.+||+|+|..++..+..+|+ +..+++|++++++.++++++++||++++|++| |.| .|+++.||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~-~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y-~y~~~~fG 78 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAA-GAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVY-SYAKAGFG 78 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChh-hhHHhHcC
Confidence 6899999999999999999999999998887774 33566799999999999999999999999975 776 99999999
Q ss_pred CC
Q psy9216 123 GW 124 (125)
Q Consensus 123 ~~ 124 (125)
++
T Consensus 79 ~~ 80 (468)
T TIGR03810 79 PF 80 (468)
T ss_pred cH
Confidence 86
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.46 E-value=1.6e-13 Score=108.58 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=76.0
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
.++|||+++.++.+.++++.+||+|+|..++.++..+|+. .+++|++++++.++++++++|+++..|..|+.| .|++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~--~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~-~ya~ 91 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS--IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFS-DFAS 91 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHH
Confidence 3469999999999999999999999999999999888863 567899999999999999999999999998875 9999
Q ss_pred hhhCCC
Q psy9216 119 FGSGGW 124 (125)
Q Consensus 119 ~~~G~~ 124 (125)
+.+|++
T Consensus 92 ~~~g~~ 97 (469)
T PRK11049 92 DLLGPW 97 (469)
T ss_pred HHhCcH
Confidence 999985
No 25
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.41 E-value=6.2e-13 Score=105.69 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=74.4
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+|||+|..+++..+++|..||+|.|...+..+..+||.| .+++|++.+++.+++..|++||+..+|++| .|..|..+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g-~li~y~i~G~~vy~vm~sLGEma~~~P~sG-sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAG-LLIAYLIIGIMVYFVMQSLGELAVFYPVSG-SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-chhhhhhhh
Confidence 699999999999999999999999999999999999864 677899999999999999999999999764 477999988
Q ss_pred hCC
Q psy9216 121 SGG 123 (125)
Q Consensus 121 ~G~ 123 (125)
.++
T Consensus 119 vdp 121 (541)
T COG0833 119 VDP 121 (541)
T ss_pred cCc
Confidence 765
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.40 E-value=5e-13 Score=104.18 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=73.1
Q ss_pred cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhh
Q psy9216 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGS 121 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~ 121 (125)
|||+++.++.+++.++.++|+|+|..++......|+. .++.|+++++..++.+++++|+++++|.+||.| .|+++.+
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y-~~~~~~~ 77 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA--VILSFVLAGLTALFIALVYAELAAMLPVAGSPY-TYAYEAM 77 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcce-eeHHHHh
Confidence 5899999999999999999999999999877766653 566799999999999999999999999999987 9999999
Q ss_pred CCC
Q psy9216 122 GGW 124 (125)
Q Consensus 122 G~~ 124 (125)
||+
T Consensus 78 G~~ 80 (429)
T TIGR00909 78 GEL 80 (429)
T ss_pred CcH
Confidence 986
No 27
>KOG1286|consensus
Probab=99.38 E-value=1.1e-13 Score=111.52 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=76.3
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchHhHhh
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHL-SGAAVNAL 117 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~-GG~y~~~~ 117 (125)
+++|||+++.+++.++++|.+||+|+|...+.++...|+++ .++.|+++++..++.++||+||+.++|.+ |+.| .|+
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s-~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~-~ya 102 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPS-LLISFIIAGIAALLSALCLGEFAVRFPVSAGSFY-TYA 102 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChh-HHHHHHHHHHHHHHHHHHHHHHheecccccccce-eee
Confidence 36899999999999999999999999999999998888652 45569999999999999999999999995 7765 999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+.|
T Consensus 103 ~~~i~e~~ 110 (554)
T KOG1286|consen 103 YRFVGESL 110 (554)
T ss_pred eeeeCcHH
Confidence 99998754
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.30 E-value=2.2e-12 Score=101.52 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=63.0
Q ss_pred HHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 54 MIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 54 ~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
++++.+||+|+|.+++..++.+|+. .+++|++++++.++++++++||++++|++||.| .|+++.+|+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~--~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y-~y~~~~~G~~~ 70 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA--VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFS-TYADKAIGRWA 70 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHcChHH
Confidence 5678999999999999999888853 677899999999999999999999999999987 99999999863
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.19 E-value=4.1e-11 Score=101.90 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=74.0
Q ss_pred ccccccChHHHHHHH-hhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchHhHhhH
Q psy9216 41 RLQKELGLMDGVAMI-VGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEK-ICHLSGAAVNALD 118 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~-~P~~GG~y~~~~~ 118 (125)
.-+|+++++..+.+- +..++|+++|..++.+...+|. +.+++.|+++++++++.++|++|+++. +|.+||.| .|++
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~-~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGI-GLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHH
Confidence 345789999988887 8999999999999999989884 456778999999999999999999998 99999998 9999
Q ss_pred hhhCCC
Q psy9216 119 FGSGGW 124 (125)
Q Consensus 119 ~~~G~~ 124 (125)
+++|+.
T Consensus 151 ralGp~ 156 (953)
T TIGR00930 151 RSLGPE 156 (953)
T ss_pred HHhCcH
Confidence 999984
No 30
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.18 E-value=6e-11 Score=94.54 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=60.4
Q ss_pred cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHH-HHHHHHHHHHHHhhhcC-CCchHhHhhHh
Q psy9216 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGAL-SMIGALCYAELVEKICH-LSGAAVNALDF 119 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~-~~~~a~~~ael~s~~P~-~GG~y~~~~~~ 119 (125)
+||++++++++.+.++.++|.+. .+ ......|+. .++.|++++++ .++++++++||++++|+ +||.| .|+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~--~~-~~~~~~G~~--~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y-~w~~~ 78 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN--SP-RAFYLMGYS--AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIY-SWMNK 78 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc--hH-HHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH-HHHHH
Confidence 47899999999999999998653 23 223344532 44456656655 57899999999999997 89998 99999
Q ss_pred hhCCCC
Q psy9216 120 GSGGWW 125 (125)
Q Consensus 120 ~~G~~~ 125 (125)
++|++|
T Consensus 79 ~~G~~~ 84 (496)
T PRK15238 79 SVGPKF 84 (496)
T ss_pred HcCchH
Confidence 999875
No 31
>PHA02764 hypothetical protein; Provisional
Probab=99.15 E-value=9.1e-11 Score=88.42 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=65.4
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD 118 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 118 (125)
...|-|+++.++.+...++.+.. |.-...........++...+++|+++++.+++.+++++|+++++|.+||.| .|.+
T Consensus 7 SSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdY-VYIS 84 (399)
T PHA02764 7 SSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDY-AYIR 84 (399)
T ss_pred cCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceE-EEhH
Confidence 34688999999999998888832 221121222233344444566799999999999999999999999999998 9999
Q ss_pred hhhCCCC
Q psy9216 119 FGSGGWW 125 (125)
Q Consensus 119 ~~~G~~~ 125 (125)
+++|+++
T Consensus 85 RAFGP~~ 91 (399)
T PHA02764 85 TAFSSKF 91 (399)
T ss_pred HhhCccH
Confidence 9999863
No 32
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.14 E-value=1e-10 Score=91.67 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=77.8
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL 117 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 117 (125)
++++|||.++.+++..++++..||+|.|...+..++.+||. .+++|++++++.+++.-+++||.-..|.+|+ +..|+
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS--vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gS-F~~~a 83 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS--VLLAYLIAGIFVFLIMRALGEMLVANPVSGS-FSDYA 83 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHH
Confidence 34569999999999999999999999999999999999875 6678999999999999999999999999965 67999
Q ss_pred HhhhCCCC
Q psy9216 118 DFGSGGWW 125 (125)
Q Consensus 118 ~~~~G~~~ 125 (125)
++.+|+|.
T Consensus 84 ~~~lG~~A 91 (462)
T COG1113 84 RKYLGPWA 91 (462)
T ss_pred HHHhcchH
Confidence 99999874
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.13 E-value=1.6e-10 Score=90.31 Aligned_cols=84 Identities=35% Similarity=0.473 Sum_probs=71.9
Q ss_pred cccccccccChHH-HHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216 38 NKIRLQKELGLMD-GVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA 116 (125)
Q Consensus 38 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 116 (125)
.+++++|+++.++ ...+.++.+++.|+|..++...... +...+.|++++++.++.+++++|+++.+|++||.| .|
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~---~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y-~~ 81 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAY-AY 81 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCee-ee
Confidence 3556789999999 8999999999999999988866554 22444599999999999999999999999999987 99
Q ss_pred hHhhhCCCC
Q psy9216 117 LDFGSGGWW 125 (125)
Q Consensus 117 ~~~~~G~~~ 125 (125)
+++.+|+++
T Consensus 82 ~~~~~g~~~ 90 (466)
T COG0531 82 AKRALGPRL 90 (466)
T ss_pred hhhhcCcch
Confidence 999999863
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.04 E-value=2.8e-10 Score=88.49 Aligned_cols=74 Identities=35% Similarity=0.616 Sum_probs=60.9
Q ss_pred cChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 46 LGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS-MIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 46 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
+++++.+++.++.++|+|++..+ .....|+. .++.|++++++. ++.+++|+|+++++|.+||.| .|+++.+||+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~--~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y-~~~~~~~g~~ 75 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPS--AILAWIIAALLFFLPIALSYAELSSAYPSAGGIY-VWVSRAFGPF 75 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCH--HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHH-HHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeee-ehhhhccccc
Confidence 57899999999999999999877 34344432 555688888877 899999999999999999997 9999999975
No 35
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.77 E-value=1.7e-08 Score=77.19 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
+++.++.+.+.++.++|+|++..|+.....+|+. ++++++++++..++.+++++|+++++|.. +.+ .|.++.+||+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~-~~~~~~~Gk~ 77 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFS-EILSKYLGKI 77 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHH-HHHHHHhhHH
Confidence 6899999999999999999999999988888876 78889999999999999999999999987 554 9999999986
No 36
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.74 E-value=1.3e-08 Score=81.53 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=57.1
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHH-HHHHHHHH-HHHHHHHHHHHHhhhc-CCCchHhHhhHh
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALI-VWVMSGAL-SMIGALCYAELVEKIC-HLSGAAVNALDF 119 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~-~~i~~~~~-~~~~a~~~ael~s~~P-~~GG~y~~~~~~ 119 (125)
+|++++++++.+.++.+++ ++..+. ....| ...+ .|++++++ .++++++++||++++| .+||.| .|+++
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y-~wv~~ 74 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIF-AWVSN 74 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCee-eehhh
Confidence 4779999999999888864 554442 22333 3444 46666665 5779999999999997 999997 99999
Q ss_pred hhCCCC
Q psy9216 120 GSGGWW 125 (125)
Q Consensus 120 ~~G~~~ 125 (125)
++|++|
T Consensus 75 a~G~~~ 80 (507)
T TIGR00910 75 TLGERF 80 (507)
T ss_pred ccCccH
Confidence 999875
No 37
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.70 E-value=2.2e-08 Score=79.38 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=57.9
Q ss_pred cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS-MIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
||+++++++.+.+..+++ +...+.. ...|+. .++.|++++++. ++.+++++||++++|.+||.| .|+++++|
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~--a~~G~~--~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y-~~~~~a~G 73 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE--AEYGLS--AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVF-RWVGEAFG 73 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH--HHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCce-eeHhhhcC
Confidence 458999999998888765 4443322 234432 455699999876 479999999999999999987 99999999
Q ss_pred CCC
Q psy9216 123 GWW 125 (125)
Q Consensus 123 ~~~ 125 (125)
+++
T Consensus 74 ~~~ 76 (474)
T TIGR03813 74 ARW 76 (474)
T ss_pred hhH
Confidence 874
No 38
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.64 E-value=9.8e-09 Score=81.38 Aligned_cols=72 Identities=24% Similarity=0.396 Sum_probs=63.2
Q ss_pred HHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 52 VAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 52 ~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
+.++++.++|+|+|...+......|+.+ .++++++++++.++.+.+++||++.+|.+||.| .|+++.+|+.+
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y-~y~~~~lg~~~ 74 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFY-AYASRGLGPAL 74 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchh-hhhhhccCCcC
Confidence 3467888999999999999888888643 567899999999999999999999999999987 99999999863
No 39
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.49 E-value=9.7e-08 Score=73.60 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 53 AMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 53 ~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
.+.++.+||+|++.+|.......+ .+.++..+++++.+.+.+++++|+++++|..+|.| .|.++.+||+
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~--~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~-~~~~~~~G~~ 72 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWF--IWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFN-TIAKDLLGKT 72 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHhCHH
Confidence 456788999999999988665432 23555678899999999999999999999987765 9999999986
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.26 E-value=0.0013 Score=49.74 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.6
Q ss_pred ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
|++..|...+.+..++|+++...|+.....++ . ++++.+++++..+..++.+..+.+++|.. . ...|.++.+||+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d--~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~-l~~~~~~~~Gk~ 75 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-D--AWISVLLGGLIGLLLALLIYYLLKRFPGK-T-LVEISEKLFGKW 75 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--cHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-HHHHHHHHhCcH
Confidence 47889999999999999999999999888875 4 67889999999999999999999999997 3 459999999986
No 41
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.10 E-value=0.002 Score=50.47 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=62.7
Q ss_pred ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
+-+.+....+.+|+.||.|+..+|-.. ...|- .+..+..+++........+.++|+....|. +.+|..-+++.+|++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~-~~~Gf-~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIAT-AGAGF-LPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHH-HhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 447788899999999999999998653 33342 345556888888889999999999999988 567889999999986
Q ss_pred C
Q psy9216 125 W 125 (125)
Q Consensus 125 ~ 125 (125)
|
T Consensus 79 g 79 (394)
T PF03222_consen 79 G 79 (394)
T ss_pred H
Confidence 4
No 42
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0039 Score=49.20 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=65.7
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+.+++-+.++.+...++.+||+|+...|-. ....| -.+.++..++++....+..+.+.|.....|+...+|..-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 345566778888899999999999999854 33333 2334445888999999999999999999999754677999999
Q ss_pred hCCCC
Q psy9216 121 SGGWW 125 (125)
Q Consensus 121 ~G~~~ 125 (125)
+|++|
T Consensus 82 ~G~~~ 86 (415)
T COG0814 82 LGKKG 86 (415)
T ss_pred hCcch
Confidence 99876
No 43
>PRK10483 tryptophan permease; Provisional
Probab=96.91 E-value=0.004 Score=49.22 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=65.9
Q ss_pred cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhh
Q psy9216 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGS 121 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~ 121 (125)
-|++.+.+....+..|+.||.|++..|-. ....|- .++.+..+++.+.+...++.+.|....+|. |-++..-+++..
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF-~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~L 83 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWF-FWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLL 83 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHc
Confidence 35778999999999999999999999855 334443 345556888889999999999999988886 566789999999
Q ss_pred CCCC
Q psy9216 122 GGWW 125 (125)
Q Consensus 122 G~~~ 125 (125)
|+.|
T Consensus 84 G~~g 87 (414)
T PRK10483 84 GKGW 87 (414)
T ss_pred ChHH
Confidence 9865
No 44
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.81 E-value=0.0038 Score=49.39 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
+.+....+..|++||.|++..|-. .+..|- .++.+..+++.+.+...++.+.|....+|. |-++..-+++..|+.|
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf-~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g 85 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVD-LAGAWF-FWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTW 85 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHH-HhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHH
Confidence 667788899999999999999855 333442 234556888889999999999999999986 5667899999999864
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.54 E-value=0.0051 Score=48.10 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=52.8
Q ss_pred HhhchhcchhccchHHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 55 IVGVIVGSGIFVSPIGVLKNAGSP-GLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 55 ~~~~~ig~gi~~~~~~~~~~~G~~-G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
.++.-+|+|.+.-|..+...+|+. .++++.|++++++..+.+++ +.|.+||.| .+..+.+||+
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~-~~l~~~~g~~ 67 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGY-DSLSARIGKV 67 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCH-HHHHHHhChH
Confidence 345558899999999999999877 66677799999999888887 899999987 8888888875
No 46
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.45 E-value=0.0079 Score=47.28 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=46.3
Q ss_pred HHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 52 VAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALC----YAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 52 ~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~----~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
+...++.++|+|++..|.. +|.. .++.+++..++.+..++. +.|.....|..+..+..++++.|||++
T Consensus 9 ~~~l~gt~IGaGiL~LP~~----ag~~--G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ----AGLG--GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence 4556688899999999976 3333 355667766666665554 455544445545567799999999864
No 47
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.44 E-value=0.018 Score=45.64 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=55.7
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-------CCchH
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICH-------LSGAA 113 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~-------~GG~y 113 (125)
+-+++++.++.++.+++..+|+|=.......+...|| |..+|-|+.+.+ -+...++=.-|+-.|-+ .||..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~-Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALL-GMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHH-HHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 3456899999999999999999988887776655554 444445665443 33333333336655543 36674
Q ss_pred hHhhHhhhCCCC
Q psy9216 114 VNALDFGSGGWW 125 (125)
Q Consensus 114 ~~~~~~~~G~~~ 125 (125)
+|.++.+|.+|
T Consensus 92 -yyi~~gl~~k~ 102 (416)
T PF01235_consen 92 -YYIEKGLGSKW 102 (416)
T ss_pred -HHHHHHhccch
Confidence 89999999776
No 48
>KOG1303|consensus
Probab=96.34 E-value=0.034 Score=44.36 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=62.4
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch----HhHh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGA----AVNA 116 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~----y~~~ 116 (125)
..+|+-++++.....++.++|.|+..+| .+....|-. +.++..++.+++.+-.+.-+.++-...|.-.|. |...
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~-~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWI-SGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 3467789999999999999999999988 445555532 224456677777777777788888777777664 8889
Q ss_pred hHhhhCCC
Q psy9216 117 LDFGSGGW 124 (125)
Q Consensus 117 ~~~~~G~~ 124 (125)
.+++||++
T Consensus 111 ~~~afG~~ 118 (437)
T KOG1303|consen 111 GQAAFGPK 118 (437)
T ss_pred HHHHhCCC
Confidence 99999975
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=95.62 E-value=0.063 Score=42.90 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 53 AMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 53 ~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
...+|..||.|++.+|-... ..| -.+.++..+++..+.....+.+.|.....+..|..+..-+++.+|+.|
T Consensus 26 l~l~GTAIGAGmLfLPI~~g-~~G-f~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g 96 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAG-FGG-LIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTG 96 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhH
Confidence 45668889999999985422 222 223344478888888888899999999985567778899999999865
No 50
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=95.53 E-value=0.048 Score=43.01 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=56.0
Q ss_pred ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
+.+....+.+|+.||.|++.+|-... ..|- .+.++..+++.......++.++|....+|. |..+..-+++.+|+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~-~~Gf-~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g 79 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA-GVGF-SVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYG 79 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH-hChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHH
Confidence 56777888999999999999985533 3332 234444677777677788889997777764 4567789999999864
No 51
>PTZ00206 amino acid transporter; Provisional
Probab=93.98 E-value=0.53 Score=37.71 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=46.7
Q ss_pred ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
+.++...-.+..++|+|+...|.. ....|-. +.++..++.++++......+.+.+...+. -.|..-.+.++|++
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v-~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~ 134 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLV-MAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPW 134 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHH
Confidence 345566666777899999998866 3445432 23334555555555555556666655443 36888888888875
No 52
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=93.86 E-value=0.46 Score=38.02 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=57.4
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH--HHhhhc-------CCCc
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE--LVEKIC-------HLSG 111 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ae--l~s~~P-------~~GG 111 (125)
+-++.++.++.++.+++..+|+|=.......+...|| |..+|-|+.+.+.+ +..|+| |+..|- -.||
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gm---at~f~E~~La~~Yr~kd~~G~~~GG 133 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGM---ATKFAESTLAQKYRVKDKDGEYRGG 133 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHH---HHHHHHHHHHhheeEeCCCCCCcCC
Confidence 3457799999999999999999888877776655554 54555688665543 445555 666664 2456
Q ss_pred hHhHhhHhhhCCCC
Q psy9216 112 AAVNALDFGSGGWW 125 (125)
Q Consensus 112 ~y~~~~~~~~G~~~ 125 (125)
+ .+|.++.+|.+|
T Consensus 134 P-~yYi~kGl~~r~ 146 (452)
T COG1115 134 P-AYYIEKGLGMRW 146 (452)
T ss_pred h-HHHHHhhcCCcH
Confidence 6 489999998765
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=93.51 E-value=0.46 Score=37.86 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=47.4
Q ss_pred cccChHHHHHHHhhchhcch-hccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc---C----CCchHhH
Q psy9216 44 KELGLMDGVAMIVGVIVGSG-IFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC---H----LSGAAVN 115 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~g-i~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P---~----~GG~y~~ 115 (125)
.+++.++.++.+++..+|+| +...+.. +...|+ |..++-|+.+.+. ....++-.-|+-.|- . .||.. +
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GGp-GAvFWMWI~allG-m~~~~~e~~L~~~yr~~~~~g~~~GGP~-y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGGP-GAVFWMWVTAFIG-MATKFVESTLAQKYRERDADGVFRGGPM-Y 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcCC-CchHHHHHHHHHH-HHHHHHHHHHHHHeeeeCCCCCEecChH-H
Confidence 45999999999999999998 6555544 555565 4344556654443 333344333554443 2 24543 6
Q ss_pred hhHhhhCCCC
Q psy9216 116 ALDFGSGGWW 125 (125)
Q Consensus 116 ~~~~~~G~~~ 125 (125)
|.++..+.+|
T Consensus 121 yi~~gl~~k~ 130 (425)
T TIGR00835 121 YIKKGLGMRW 130 (425)
T ss_pred HHHHHhCccH
Confidence 7777766443
No 54
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=93.05 E-value=0.15 Score=39.33 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=56.8
Q ss_pred cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchHhHhhHhhh
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC--HLSGAAVNALDFGS 121 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P--~~GG~y~~~~~~~~ 121 (125)
|+-+.++.....++.++|+|++..|.... ..|-. +.++..++.++++......+.+.....| +.--.|..-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~~G~~-~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-QSGWV-LGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhh-hhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 45688999999999999999999987644 44422 2334467777777777888888887765 22345666677888
Q ss_pred CCCC
Q psy9216 122 GGWW 125 (125)
Q Consensus 122 G~~~ 125 (125)
|+++
T Consensus 79 G~~~ 82 (409)
T PF01490_consen 79 GPKG 82 (409)
T ss_pred cccc
Confidence 8764
No 55
>PLN03074 auxin influx permease; Provisional
Probab=91.30 E-value=1.7 Score=35.02 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=42.8
Q ss_pred ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCch-------H
Q psy9216 45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY----AELVEKICHLSGA-------A 113 (125)
Q Consensus 45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~----ael~s~~P~~GG~-------y 113 (125)
.-+.++...-.+...+|.|+..+|.. ....|-. +.++..++.+++..-....+ -|...+.|..+-. |
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 33445554556677789999998866 4455532 23334455554444444443 4556666664322 2
Q ss_pred hHhhHhhhCCCC
Q psy9216 114 VNALDFGSGGWW 125 (125)
Q Consensus 114 ~~~~~~~~G~~~ 125 (125)
..-....+|++|
T Consensus 123 ~e~~~~~~G~~~ 134 (473)
T PLN03074 123 FEVLDGLLGPYW 134 (473)
T ss_pred HHHHHHhcChhH
Confidence 233344567764
No 56
>KOG1305|consensus
Probab=89.64 E-value=2.6 Score=33.52 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=59.5
Q ss_pred cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCC
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGG 123 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~ 123 (125)
++-+.+..+.-..+.++|+|++..|.. ....| ..+.++...+.++........+.+.+...+.. .|..-.+..+|+
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~G-iv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAG-LLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGK 79 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHH-HHHhc-HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCC
Confidence 455777788888899999999998865 55555 34445557777888888888899998888887 788888888886
Q ss_pred C
Q psy9216 124 W 124 (125)
Q Consensus 124 ~ 124 (125)
.
T Consensus 80 ~ 80 (411)
T KOG1305|consen 80 L 80 (411)
T ss_pred C
Confidence 4
No 57
>PRK11375 allantoin permease; Provisional
Probab=75.68 E-value=35 Score=27.65 Aligned_cols=82 Identities=10% Similarity=-0.032 Sum_probs=45.5
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF 119 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 119 (125)
++-+|+-+.++.+.+=++..+...-+...+..+ ..|-. .+-+.+...+..++.....+-.+..=+..|=.+....+.
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~~GLs--~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~ 97 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-ILGLS--TFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRA 97 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-Hccch--HHHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHH
Confidence 344677888888887766665433332222222 22221 222344445555555555555555555555566788999
Q ss_pred hhCCC
Q psy9216 120 GSGGW 124 (125)
Q Consensus 120 ~~G~~ 124 (125)
.||.+
T Consensus 98 sFG~~ 102 (484)
T PRK11375 98 SYGVR 102 (484)
T ss_pred HHccc
Confidence 99865
No 58
>KOG1304|consensus
Probab=74.84 E-value=44 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.0
Q ss_pred cccccChHHHHHHHhhchhcchhccchHHHHHhhCC
Q psy9216 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGS 77 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~ 77 (125)
.++-.+..+.+.=.+-.++|+|++..|.. ...+|-
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~ 77 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGL 77 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHH-HHhcch
Confidence 34456777777777778899999998865 555553
No 59
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=68.82 E-value=23 Score=27.83 Aligned_cols=81 Identities=10% Similarity=-0.104 Sum_probs=39.1
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+-+|+-+.++.+.+=++..+....+..-.. ....|-. ..-+.+...+.+++..+..+-++..=|+.|=.+....+..
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~--~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~ 80 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLS--FWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRAS 80 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS---HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCch--HHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhc
Confidence 346777888888876666554333333222 2223321 2223444444555555555556666677766677888888
Q ss_pred hCCC
Q psy9216 121 SGGW 124 (125)
Q Consensus 121 ~G~~ 124 (125)
||.+
T Consensus 81 FG~~ 84 (440)
T PF02133_consen 81 FGYR 84 (440)
T ss_dssp S-TT
T ss_pred cCcc
Confidence 8864
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=66.79 E-value=20 Score=27.95 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=52.1
Q ss_pred HHHHhhchhcchhccchHHHHHhhCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216 52 VAMIVGVIVGSGIFVSPIGVLKNAGSPGL-ALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW 125 (125)
Q Consensus 52 ~~~~~~~~ig~gi~~~~~~~~~~~G~~G~-~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~ 125 (125)
....++.++|.| |.+-+.+.+..+.-|. ..+..++++++..+.+....+++..+-.. .|..+.++.+|+++
T Consensus 9 ~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~--~y~~~~~~v~~~~~ 80 (349)
T COG3949 9 AFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNAT--SYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHhhHHH
Confidence 334556778865 4555666666654432 34458889999999999999999998765 68889999998764
No 61
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=62.47 E-value=45 Score=26.42 Aligned_cols=82 Identities=6% Similarity=-0.088 Sum_probs=39.4
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF 119 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 119 (125)
++-+|+.+.++.+.+=++..+...-+..-.. ....|-. ..-+.+...+..++.+...+-++..=|+.|=.+....+.
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~-l~~~GLs--~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~ 84 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGAL-GLPLGLS--WWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRA 84 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHH-HHhcCCc--HHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhh
Confidence 3445667888877776666544222222212 1122211 111233333344444444444444444444445578888
Q ss_pred hhCCC
Q psy9216 120 GSGGW 124 (125)
Q Consensus 120 ~~G~~ 124 (125)
.||.+
T Consensus 85 ~FG~~ 89 (442)
T TIGR00800 85 SFGIY 89 (442)
T ss_pred hhhhh
Confidence 88854
No 62
>KOG2082|consensus
Probab=62.34 E-value=6.6 Score=33.99 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=34.5
Q ss_pred hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCchHhHhhHhhhCC
Q psy9216 60 VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEK--ICHLSGAAVNALDFGSGG 123 (125)
Q Consensus 60 ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~--~P~~GG~y~~~~~~~~G~ 123 (125)
.|.-.|.-...+...+|- +-.++..+++.+..++.+.++.-+++- .| +||.| .-+.|..|+
T Consensus 129 lGVilFiRLtWvVG~AGv-~q~fllv~iCC~cTmLTaISmSAIATNGVVp-aGGsY-fmISRsLGP 191 (1075)
T KOG2082|consen 129 LGVILFIRLTWVVGMAGV-GQGFLLVFICCLCTMLTAISMSAIATNGVVP-AGGSY-FMISRSLGP 191 (1075)
T ss_pred HHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCee-EEEecccCc
Confidence 343344444444444442 223334555666666677777777765 44 47877 667777665
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=54.34 E-value=69 Score=25.16 Aligned_cols=40 Identities=10% Similarity=-0.136 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216 85 WVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124 (125)
Q Consensus 85 ~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~ 124 (125)
.+...+..++.+...+-.+..=|+.|=.+....+..||.+
T Consensus 45 i~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~ 84 (404)
T PRK11017 45 LLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEK 84 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchh
Confidence 3444444444444445455555666666778888888864
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.48 E-value=46 Score=23.07 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=9.5
Q ss_pred hHHHHHHHhhch-hcchhcc
Q psy9216 48 LMDGVAMIVGVI-VGSGIFV 66 (125)
Q Consensus 48 ~~~~~~~~~~~~-ig~gi~~ 66 (125)
...++.+.+|.+ +.+|+..
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 344455555554 4445544
No 65
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=48.69 E-value=61 Score=19.75 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=21.3
Q ss_pred cccccChHHHHHHHhhchhcchhccchHH
Q psy9216 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIG 70 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~ 70 (125)
.=-.++..|++.++.+..++.+.+.....
T Consensus 13 i~~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 13 IFFGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999998887776665433
No 66
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=45.03 E-value=1.4e+02 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=21.9
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHH
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLK 73 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~ 73 (125)
++-+|+-+.++.+.+=.+.+.-.+-+...+....
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~ 68 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFE 68 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3567899999998887777654444444444343
No 67
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=44.77 E-value=1.1e+02 Score=23.85 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
.|+++.+-...-.++..++.+-|..........|-. .++.++...+..+..+..+++.-.+.+.. ....|.++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA--IGFYELGALVLLIILGWLFVPIFINNGAY--TMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCC--chhHHHHHHhC
Confidence 377888776666666666665666543333333421 22222222333444555566655454432 33478888777
Q ss_pred C
Q psy9216 123 G 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 78 ~ 78 (407)
T TIGR00813 78 K 78 (407)
T ss_pred c
Confidence 6
No 68
>PF07937 DUF1686: Protein of unknown function (DUF1686); InterPro: IPR012468 The members of this family are all hypothetical proteins of unknown function expressed by the eukaryotic parasite Encephalitozoon cuniculi GB-M1. The region in question is approximately 250 amino acids long.
Probab=41.65 E-value=27 Score=24.77 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.0
Q ss_pred cccccChHHHHHHHhhchh
Q psy9216 42 LQKELGLMDGVAMIVGVIV 60 (125)
Q Consensus 42 l~r~l~~~~~~~~~~~~~i 60 (125)
-||+++.++...+..++++
T Consensus 86 ~r~gMs~rq~~v~~~GNiv 104 (185)
T PF07937_consen 86 VRRGMSWRQMCVFGAGNIV 104 (185)
T ss_pred HHcCCCHHHHHHHHHhHHH
Confidence 3678999999999999873
No 69
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.35 E-value=1.4e+02 Score=19.52 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9216 85 WVMSGALSMIGALCYAEL 102 (125)
Q Consensus 85 ~i~~~~~~~~~a~~~ael 102 (125)
.+++.+..+.....|.-+
T Consensus 43 mllG~L~~l~S~~VYfwI 60 (114)
T PF11023_consen 43 MLLGLLAILASTAVYFWI 60 (114)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455544444444444443
No 70
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.78 E-value=40 Score=19.04 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=20.1
Q ss_pred cccccccccChHHHHHHHhhchhcchhc
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIF 65 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~ 65 (125)
..+.-||-|..|-++.+.+..++|.|.+
T Consensus 20 ~~~VER~PFrP~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 20 VNQVERKPFRPWRLLIVLIVVVIGLGLL 47 (55)
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHH
Confidence 3455677888988888888877765443
No 71
>KOG4684|consensus
Probab=31.62 E-value=1.2e+02 Score=22.38 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=8.4
Q ss_pred HhhhcCCCchHhHhh
Q psy9216 103 VEKICHLSGAAVNAL 117 (125)
Q Consensus 103 ~s~~P~~GG~y~~~~ 117 (125)
.+.-|.-||.|..|.
T Consensus 232 ~s~a~~~gg~yf~~~ 246 (275)
T KOG4684|consen 232 ASVAPVFGGSYFFNN 246 (275)
T ss_pred hhhccccchhHHHHH
Confidence 455566666665444
No 72
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=29.08 E-value=1e+02 Score=21.18 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=26.3
Q ss_pred hhcchhccchHHHHHhhCCchHHHHHHH--HHHHHHHHHHHHHHHHHhhh-cCCCch
Q psy9216 59 IVGSGIFVSPIGVLKNAGSPGLALIVWV--MSGALSMIGALCYAELVEKI-CHLSGA 112 (125)
Q Consensus 59 ~ig~gi~~~~~~~~~~~G~~G~~~~~~i--~~~~~~~~~a~~~ael~s~~-P~~GG~ 112 (125)
.+|.+.|.....+.......-|.++.++ ++.++.-++.++|+-|++.+ |..-|.
T Consensus 74 ~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GS 130 (153)
T PF11947_consen 74 ALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGS 130 (153)
T ss_pred HHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCC
Confidence 3454555554444433322222333322 23344445777888888775 552343
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=26.94 E-value=2.1e+02 Score=22.15 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=15.9
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhC
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAG 76 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G 76 (125)
.|+++.+-...-.++..++.+-|..........|
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G 38 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYG 38 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3778887655555555666555555333333344
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=26.76 E-value=3.6e+02 Score=22.14 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhh
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLAL-IVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGS 121 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~-~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~ 121 (125)
.|+++.|-...-.++..++..-|..........|-.+... +.|.++ ..++++.++..-.++... -.+ .|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~~-T~~-e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGKY-TVP-DFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCc-cHH-HHHHHHh
Confidence 4788888755555555565555554333333334321111 113222 223445556665555443 343 7778777
Q ss_pred CC
Q psy9216 122 GG 123 (125)
Q Consensus 122 G~ 123 (125)
|+
T Consensus 106 ~s 107 (552)
T TIGR03648 106 YS 107 (552)
T ss_pred CC
Confidence 74
No 75
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.07 E-value=95 Score=23.26 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=13.9
Q ss_pred cchhccchHHHHHhhCCchHHHHHHHHHHHHHHH
Q psy9216 61 GSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMI 94 (125)
Q Consensus 61 g~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~ 94 (125)
+.|+-.+....+...| | ..++|++..++.++
T Consensus 212 aigltvGT~~~A~~~~--g-iY~~wv~~~l~a~~ 242 (256)
T PF09788_consen 212 AIGLTVGTWTYAKTYG--G-IYVSWVGLFLIALI 242 (256)
T ss_pred HHHHhhhhHHHHhhcC--c-EeHHHHHHHHHHHH
Confidence 3344444333333333 2 34456666555443
No 76
>COG3768 Predicted membrane protein [Function unknown]
Probab=23.63 E-value=2.8e+02 Score=21.70 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=31.3
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhh-CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNA-GSPGLALIVWVMSGALSMIGALCYAELV 103 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~-G~~G~~~~~~i~~~~~~~~~a~~~ael~ 103 (125)
..+|++.++|.....+.+.+++..+-.-.-...... -.. -|+.|..+++..+.+....+++.
T Consensus 55 a~~rpr~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr~--dWl~~~a~~v~~l~vlagv~~v~ 117 (350)
T COG3768 55 APLRPRSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQRA--DWLGLGAAAVGALIVLAGVGSVV 117 (350)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888887766666655433222111111111 111 35556666666665555555443
No 77
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=20.99 E-value=3.3e+02 Score=19.58 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=35.6
Q ss_pred ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9216 39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEK 105 (125)
Q Consensus 39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~ 105 (125)
+.++++-+++...+.+++-.. .+...........|..|....+.+-+..=.-.+.++++.+...
T Consensus 116 ~~~~~nP~~L~~Al~Fa~l~~---~i~~~~~~~~~~~G~~Gl~~~a~isGl~Dvda~tlSla~l~~~ 179 (211)
T PF13194_consen 116 ELKLSNPFELKSALKFALLFA---VILLLSRAAQRWFGDSGLYALAAISGLADVDAITLSLARLAAG 179 (211)
T ss_pred CCCCCCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHChhhHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 334567788877766654443 2333444445556766544334444444444577777777543
Done!