Query psy9216
Match_columns 125
No_of_seqs 178 out of 1120
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:53:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 99.5 3.7E-14 1.3E-18 109.0 7.8 81 41-124 3-83 (444)
2 3l1l_A Arginine/agmatine antip 99.5 3.2E-14 1.1E-18 109.3 6.3 81 40-124 4-84 (445)
3 4djk_A Probable glutamate/gamm 99.1 7.2E-11 2.5E-15 92.1 5.2 78 38-124 5-86 (511)
4 2jln_A MHP1; hydantoin, transp 92.0 0.56 1.9E-05 36.7 7.4 80 41-124 22-101 (501)
5 3dh4_A Sodium/glucose cotransp 27.2 1.9E+02 0.0066 22.3 6.7 77 43-123 19-95 (530)
6 4aw6_A CAAX prenyl protease 1 23.5 1.7E+02 0.0056 22.8 5.6 52 51-103 168-219 (482)
7 2xq2_A Sodium/glucose cotransp 14.4 4.5E+02 0.015 20.6 6.4 77 43-123 48-124 (593)
8 3qrx_B Melittin; calcium-bindi 10.5 1.6E+02 0.0054 13.1 1.7 8 79-86 13-20 (26)
9 2iub_A CORA, divalent cation t 10.3 1E+02 0.0036 22.6 1.4 23 44-68 304-326 (363)
10 4ev6_A Magnesium transport pro 8.7 1.1E+02 0.0036 22.3 0.9 21 45-67 281-301 (339)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.50 E-value=3.7e-14 Score=109.05 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=74.6
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+.||+++.++.++++++.++|+|+|..++.....+|+. .++.|++++++.++.+++++|+++++|.+||.| .|+++.
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~--~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y-~~~~~~ 79 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN--LPETFILSGIYALLVAYSYTKLGAKIVSNAGPI-AFIHKA 79 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHH-HHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HhHHHH
Confidence 45799999999999999999999999998888888764 677899999999999999999999999999997 999999
Q ss_pred hCCC
Q psy9216 121 SGGW 124 (125)
Q Consensus 121 ~G~~ 124 (125)
+|++
T Consensus 80 ~G~~ 83 (444)
T 3gia_A 80 IGDN 83 (444)
T ss_dssp HCSS
T ss_pred hCcc
Confidence 9985
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.49 E-value=3.2e-14 Score=109.28 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=70.7
Q ss_pred cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216 40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF 119 (125)
Q Consensus 40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 119 (125)
+++||+++.++.+++.++.++|+|+|..++.+ ...|+. +++.|++++++.++.+++++|+++++|.+||.| .|+++
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~--~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y-~~~~~ 79 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGI--AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSY-AYARR 79 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHH-HHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCch-hhHHh
Confidence 35789999999999999999999999998774 456753 677899999999999999999999999999987 99999
Q ss_pred hhCCC
Q psy9216 120 GSGGW 124 (125)
Q Consensus 120 ~~G~~ 124 (125)
.+|++
T Consensus 80 ~~G~~ 84 (445)
T 3l1l_A 80 CFGPF 84 (445)
T ss_dssp HSCHH
T ss_pred HcCCh
Confidence 99975
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.09 E-value=7.2e-11 Score=92.12 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=52.0
Q ss_pred cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHH-HHHHHHHHH-HHHHHHHHHHHh--hhcCCCchH
Q psy9216 38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALI-VWVMSGALS-MIGALCYAELVE--KICHLSGAA 113 (125)
Q Consensus 38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~-~~i~~~~~~-~~~a~~~ael~s--~~P~~GG~y 113 (125)
+++++||+++.+++++++++.++| ++..+. ....| +..+ .|++++++. ++.+++++|+++ ++| +||.|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G---~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y 76 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSG---FSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVF 76 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTT---THHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChh
Confidence 356789999999999999999986 555443 23334 3444 455555554 469999999999 999 99997
Q ss_pred hHhhHhhhCCC
Q psy9216 114 VNALDFGSGGW 124 (125)
Q Consensus 114 ~~~~~~~~G~~ 124 (125)
.|+++.+|++
T Consensus 77 -~~~~~~~g~~ 86 (511)
T 4djk_A 77 -AWVSNTLGPR 86 (511)
T ss_dssp -HHHHHHHCHH
T ss_pred -hhHHhhcCch
Confidence 9999999975
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=92.05 E-value=0.56 Score=36.70 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=49.7
Q ss_pred ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+-+|+.+.++.+.+-++..+..+.+...+... . |.. ..-+++...+..++..+..+-++..-|..|-.|....+..
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs--~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~ 97 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQ--VWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMP 97 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSC--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcC--HHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhh
Confidence 34577899999988888776655554433323 2 432 2223444455555555555555555566666677899999
Q ss_pred hCCC
Q psy9216 121 SGGW 124 (125)
Q Consensus 121 ~G~~ 124 (125)
||.+
T Consensus 98 FG~~ 101 (501)
T 2jln_A 98 FGIR 101 (501)
T ss_dssp SCTT
T ss_pred cchh
Confidence 9976
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=27.19 E-value=1.9e+02 Score=22.33 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=36.2
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
.|+++.|-...-.++..+++.-|..........|-.+ ..+.|. ..+..++++..++..-.+.-.. ....|.++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~-~~~~~~-~~~~~~i~~~~~~p~~~~~~~~--T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI-ASYEWM-SAITLIIVGKYFLPIFIEKGIY--TIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGG-HHHHHH-HHHHHHHHHHHTHHHHHHTTCC--SHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCc--cHHHHHHHHcC
Confidence 4788887665555555565555554333333444332 112232 2222233344444433332221 23477777776
Q ss_pred C
Q psy9216 123 G 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 95 ~ 95 (530)
T 3dh4_A 95 K 95 (530)
T ss_dssp H
T ss_pred c
Confidence 4
No 6
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=23.45 E-value=1.7e+02 Score=22.84 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9216 51 GVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELV 103 (125)
Q Consensus 51 ~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~ 103 (125)
+-.+.++.++|.-+....-.+....|.. ..+.+|++..++.+++.+.+-.+.
T Consensus 168 ~k~~~l~~vi~~pl~~~~~~ii~~~g~~-~wl~~w~~~~~~~l~~~~iyP~~I 219 (482)
T 4aw6_A 168 IKKFVVTQCILLPVSSLLLYIIKIGGDY-FFIYAWLFTLVVSLVLVTIYADYI 219 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555565543433333445555554 233358888888888777776643
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=14.44 E-value=4.5e+02 Score=20.58 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
.|+++.+-...-.++..+++.-|..........|-.. ..+.|. ..+..+..+..+...-.+.-.. ....|.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~-~~~~~~-~~~~~~~~~~~~~p~~~r~~~~--T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI-ASYEWM-SAITLIIVGKYFLPIFIEKGIY--TIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGG-GHHHHH-HHHHHHHHHHTHHHHHHHTTCC--SHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHH-HHHHHH-HHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHcc
Confidence 3677776443333344455444444333233334221 111222 2222233333344433333221 23477777776
Q ss_pred C
Q psy9216 123 G 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 124 ~ 124 (593)
T 2xq2_A 124 K 124 (593)
T ss_dssp H
T ss_pred C
Confidence 4
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.46 E-value=1.6e+02 Score=13.10 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=4.6
Q ss_pred hHHHHHHH
Q psy9216 79 GLALIVWV 86 (125)
Q Consensus 79 G~~~~~~i 86 (125)
-|++++|+
T Consensus 13 LP~liSWi 20 (26)
T 3qrx_B 13 LPALISWI 20 (26)
T ss_pred chHHHHHH
Confidence 34666675
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.32 E-value=1e+02 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=13.6
Q ss_pred cccChHHHHHHHhhchhcchhccch
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVSP 68 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~~ 68 (125)
|.|+.++++++-.+.+. |+|...
T Consensus 304 k~LTiit~IflP~T~Ia--GiyGMN 326 (363)
T 2iub_A 304 KVLTIIATIFMPLTFIA--GIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCC--
T ss_pred HHHHHHHHHHHHHHHHH--hhhccc
Confidence 56777777776666653 466653
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.75 E-value=1.1e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=9.2
Q ss_pred ccChHHHHHHHhhchhcchhccc
Q psy9216 45 ELGLMDGVAMIVGVIVGSGIFVS 67 (125)
Q Consensus 45 ~l~~~~~~~~~~~~~ig~gi~~~ 67 (125)
.|+.++++++-.+.+ +|+|..
T Consensus 281 ~LTiit~IflP~T~I--aGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWI--TGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHHH--HhhccC
Confidence 344444444433333 345554
Done!