Query psy9216
Match_columns 125
No_of_seqs 178 out of 1120
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 21:53:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9216.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9216hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o82a_ a.64.2.1 (A:) Bacterio 10.6 90 0.0065 15.8 2.2 17 63-79 23-39 (70)
2 d2iuba2 f.17.3.1 (A:286-349) M 7.5 1.3E+02 0.0094 14.8 2.1 22 44-67 7-28 (64)
3 d2a65a1 f.54.1.1 (A:5-513) Na( 5.1 4.9E+02 0.036 17.9 5.7 52 49-103 8-60 (509)
4 d1h2sb_ f.17.4.1 (B:) Sensory 4.3 2.5E+02 0.018 13.4 3.8 23 86-108 6-28 (60)
5 d1dq3a3 d.95.2.2 (A:129-226) P 3.5 2E+02 0.014 15.4 1.1 9 116-124 57-65 (98)
6 d1wwma1 a.132.1.3 (A:11-190) H 3.5 4.6E+02 0.034 15.2 5.3 33 90-122 103-135 (180)
7 d2oa4a1 a.4.12.3 (A:1-93) Unch 3.3 2.1E+02 0.015 15.7 1.1 23 98-120 52-74 (93)
8 d1knza_ e.34.1.1 (A:) NSP3 hom 3.1 5.2E+02 0.038 15.1 2.9 18 100-118 18-35 (157)
9 d1yqga1 a.100.1.10 (A:153-263) 2.8 4.7E+02 0.034 14.1 3.7 13 99-111 62-74 (111)
10 d1v8da_ c.140.1.1 (A:) Hypothe 2.7 3E+02 0.022 17.0 1.5 17 107-123 101-117 (193)
No 1
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=10.56 E-value=90 Score=15.77 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=7.6
Q ss_pred hhccchHHHHHhhCCch
Q psy9216 63 GIFVSPIGVLKNAGSPG 79 (125)
Q Consensus 63 gi~~~~~~~~~~~G~~G 79 (125)
||..+.-+++...|++|
T Consensus 23 g~vttivsil~avgsgg 39 (70)
T d1o82a_ 23 GWVTTIVSILTAVGSGG 39 (70)
T ss_dssp CCHHHHHHHHHHHCHHH
T ss_pred cchhhHHHHHHHHcccc
Confidence 44444444444444443
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.46 E-value=1.3e+02 Score=14.80 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=12.5
Q ss_pred cccChHHHHHHHhhchhcchhccc
Q psy9216 44 KELGLMDGVAMIVGVIVGSGIFVS 67 (125)
Q Consensus 44 r~l~~~~~~~~~~~~~ig~gi~~~ 67 (125)
|.++..+.+.+-.+.+ +|+|..
T Consensus 7 k~lT~it~iflP~t~i--~gifGM 28 (64)
T d2iuba2 7 KVLTIIATIFMPLTFI--AGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHHH--TTSCC-
T ss_pred HHHHHHHHHHHHHHHH--Hhhhcc
Confidence 4566666666655555 346654
No 3
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.11 E-value=4.9e+02 Score=17.90 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHhhchhcchhccchHHHHHhhCCchHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy9216 49 MDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALI-VWVMSGALSMIGALCYAELV 103 (125)
Q Consensus 49 ~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~-~~i~~~~~~~~~a~~~ael~ 103 (125)
.+.+.-.+|..+|.|=+.-........| |.+++ .|++ .++.+.+-+.+.|++
T Consensus 8 ~~fila~~g~avGlGNiWrFPyl~~~nG--GgaFlipY~~-~l~l~gvPll~lE~~ 60 (509)
T d2a65a1 8 LGLILAMAGNAVGLGNFLRFPVQAAENG--GGAFMIPYII-AFLLVGIPLMWIEWA 60 (509)
T ss_dssp HHHHHHHHHHHSSHHHHTHHHHHHHHTT--THHHHHHHHH-HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHhhhHHHHhcC--CchhHHHHHH-HHHHHHHHHHHHHHH
Confidence 3445555666677665554334333333 22443 3543 233333555566654
No 4
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=4.28 E-value=2.5e+02 Score=13.38 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q psy9216 86 VMSGALSMIGALCYAELVEKICH 108 (125)
Q Consensus 86 i~~~~~~~~~a~~~ael~s~~P~ 108 (125)
.++.+-.++.+..|.|....-.+
T Consensus 6 fvgaltvlfgaiaygevtaaaat 28 (60)
T d1h2sb_ 6 FVGALTVLFGAIAYGEVTAAAAT 28 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHhhhhhceehHhhhc
Confidence 34566677788889888665443
No 5
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.51 E-value=2e+02 Score=15.44 Aligned_cols=9 Identities=22% Similarity=-0.019 Sum_probs=4.1
Q ss_pred hhHhhhCCC
Q psy9216 116 ALDFGSGGW 124 (125)
Q Consensus 116 ~~~~~~G~~ 124 (125)
|.++.||++
T Consensus 57 ~le~tfgkr 65 (98)
T d1dq3a3 57 YLEKTFGRK 65 (98)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhccc
Confidence 444444443
No 6
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]}
Probab=3.46 E-value=4.6e+02 Score=15.22 Aligned_cols=33 Identities=6% Similarity=-0.165 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216 90 ALSMIGALCYAELVEKICHLSGAAVNALDFGSG 122 (125)
Q Consensus 90 ~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G 122 (125)
...+++..+|.|.+...-.....|..|+..--+
T Consensus 103 ~al~pc~~~Y~~~~~~~~~~~~~y~eWI~~y~~ 135 (180)
T d1wwma1 103 VFFYFLNGLFLEAWAHHVPEEGPWAELSQHWFA 135 (180)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHcCC
Confidence 335567778888888776667788888866544
No 7
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=3.31 E-value=2.1e+02 Score=15.67 Aligned_cols=23 Identities=9% Similarity=-0.203 Sum_probs=13.0
Q ss_pred HHHHHHhhhcCCCchHhHhhHhh
Q psy9216 98 CYAELVEKICHLSGAAVNALDFG 120 (125)
Q Consensus 98 ~~ael~s~~P~~GG~y~~~~~~~ 120 (125)
+..|.+..|-.+-..|+.|...+
T Consensus 52 S~~EAcrrY~LS~eEf~~W~~a~ 74 (93)
T d2oa4a1 52 TLAEAKQTYGLSDEEFNSWVSAL 74 (93)
T ss_dssp CHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHH
Confidence 34566666666656665665543
No 8
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=3.07 E-value=5.2e+02 Score=15.14 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=10.7
Q ss_pred HHHHhhhcCCCchHhHhhH
Q psy9216 100 AELVEKICHLSGAAVNALD 118 (125)
Q Consensus 100 ael~s~~P~~GG~y~~~~~ 118 (125)
+-..+..-..|++| .|.+
T Consensus 18 ~~~~s~l~~~gi~y-D~~e 35 (157)
T d1knza_ 18 VAATSALENMGIEY-DYQD 35 (157)
T ss_dssp HHHHHHHHHTTCCC-CHHH
T ss_pred HHHHHHHHHcCCcc-hHHH
Confidence 34455566667776 6654
No 9
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=2.83 E-value=4.7e+02 Score=14.09 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.7
Q ss_pred HHHHHhhhcCCCc
Q psy9216 99 YAELVEKICHLSG 111 (125)
Q Consensus 99 ~ael~s~~P~~GG 111 (125)
..||-...-+.||
T Consensus 62 ~~~L~~~V~SpgG 74 (111)
T d1yqga1 62 FEKLQKNVTSKGG 74 (111)
T ss_dssp HHHHHHHTCCTTS
T ss_pred HHHHHhcccCcch
Confidence 3444444444444
No 10
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=2.67 E-value=3e+02 Score=17.05 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=0.0
Q ss_pred cCCCchHhHhhHhhhCC
Q psy9216 107 CHLSGAAVNALDFGSGG 123 (125)
Q Consensus 107 P~~GG~y~~~~~~~~G~ 123 (125)
|++||....|+++-|-+
T Consensus 101 ~~AGGs~a~~Ay~~~~d 117 (193)
T d1v8da_ 101 PKAGGAKATAAFLRFRD 117 (193)
T ss_dssp TTBBCHHHHHHHHHSSS
T ss_pred CCCCcHHHHHHHHhCCC
Done!