RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9216
(125 letters)
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 60.4 bits (147), Expect = 5e-12
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE 101
++GL+ M+ G I+GSG+F+ P + A + G+A+ W+++ ++ ++ YA+
Sbjct: 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANL---ASTGGIAIYGWLVTIIGALGLSMVYAK 62
Query: 102 LVEKICHLSGA 112
+ G+
Sbjct: 63 MSFLDPSPGGS 73
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 51.5 bits (124), Expect = 6e-09
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYA 100
K+L L + V+M VGV++G+ IF K AG L +++SG +++ A Y
Sbjct: 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAG-RNLP-ETFILSGIYALLVAYSYT 60
Query: 101 EL 102
+L
Sbjct: 61 KL 62
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 33.3 bits (76), Expect = 0.013
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIV-WVMSGALSMI-GALCY 99
+ + I S + + + G +L+ ++ G L I LC
Sbjct: 4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPTFATSGFSLVFFLLLGGILWFIPVGLCA 61
Query: 100 AEL 102
AE+
Sbjct: 62 AEM 64
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 30.4 bits (68), Expect = 0.12
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 4 KKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSG 63
A GR ++ + T+ +PG+ + K LGL V ++ G+
Sbjct: 129 MNAIKEWGRPKSEITHIVMATTSGVNMPGAEL-----ATAKLLGLRPNVRRVMMYQQGAF 183
Query: 64 IFVSPIGV---LKNAGSPGLALIVWV 86
+ + V L + L +
Sbjct: 184 AGATVLRVAKDLAENNAGARVLAICS 209
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann
fold, ADP-binding, transferase; HET: ADP; 2.30A
{Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Length = 485
Score = 29.4 bits (67), Expect = 0.23
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 38 NKIRLQKELGLMDGVAMIVGVI 59
NK + + + D + + VI
Sbjct: 276 NKKAVAEHFRIDDDGSPLFCVI 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.63
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 101 ELVEKICHL--------SGAAVNALDFGSGG 123
+V+ I L A + LDFG GG
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold,
closed-form, ADP and glucose binding, glycogen
biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli}
PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Length = 485
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 38 NKIRLQKELGL-MDGVAMIVGVI 59
NK +LQ +GL +D + V+
Sbjct: 276 NKRQLQIAMGLKVDDKVPLFAVV 298
>3fro_A GLGA glycogen synthase; glycosyltransferase family,
UDP/ADP-glucose-glycogen synthas rossman folds,
transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB:
2bis_A* 3l01_A*
Length = 439
Score = 27.1 bits (61), Expect = 1.6
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 38 NKIRLQKELGLMDG-VAMIVGVIV 60
K L + G+ +G M +G
Sbjct: 238 RKKSLLSKFGMDEGVTFMFIGRFD 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.6
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 90 ALSMIGALC---------YAEL-VEKICHLSGAAVNALD 118
LS+I + + +K+ + +++N L+
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5
UDP/ADP-glucose-glycogen syntha rossman folds,
transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Length = 200
Score = 26.0 bits (58), Expect = 3.2
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 38 NKIRLQKELGLMDG-VAMIVGVIV 60
K L + G+ +G M +G
Sbjct: 23 RKKSLLSKFGMDEGVTFMFIGRFD 46
>2nr4_A Conserved hypothetical protein; structural genomics, unknown
function, flavoprotein, PSI-2, protein structure
initiative; HET: FMN; 1.85A {Methanosarcina mazei}
SCOP: b.45.1.4
Length = 213
Score = 25.8 bits (56), Expect = 4.7
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 32 GSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLAL 82
G + I L G+ +G++ I+ +PIG++ P + L
Sbjct: 11 GFEKQYHDIDL-SSFGIREGISEIIASTGFEHPNAAPIGIVMKGERPFVRL 60
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 25.2 bits (55), Expect = 6.5
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 4 KKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSG 63
+KA GR ++ L + G ++P RL LGL V ++
Sbjct: 111 EKAIKEWGRPKSEITHLVFCSI-----SGIDMPGADYRLATLLGLPLTVNRLMIYSQACH 165
Query: 64 IFVSPIGVLKN---AGSPGLALIV 84
+ + + + K+ L+V
Sbjct: 166 MGAAMLRIAKDLAENNRGARVLVV 189
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 6.7
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 55 IVGVIVGSGI 64
VG GSG+
Sbjct: 1043 EVGNCSGSGM 1052
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A
{Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A*
3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Length = 268
Score = 24.7 bits (54), Expect = 9.8
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 47 GLMDGVAMIVGVIVGSGIF-----VSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE 101
GL +A+ + ++ G+ +F V G+L S +W S ++IGAL
Sbjct: 68 GLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGI 127
Query: 102 LVEKICHLSGAAVNAL 117
+ + V
Sbjct: 128 IFVGTGLVDKGPVAEF 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,918,627
Number of extensions: 112756
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 40
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)