RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9216
         (125 letters)



>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
           {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 26.3 bits (57), Expect = 1.3
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 106 ICH-LSGAAVNALDFGSGGWW 125
           ICH L+G A    D G  GWW
Sbjct: 44  ICHALTGDAEPYFDDGRDGWW 64


>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
           {Thermus filiformis [TaxId: 276]}
          Length = 181

 Score = 25.6 bits (55), Expect = 1.5
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 94  IGALCYAELVEKICHLSGAAVNALDFGSGGWW 125
              LC A+  E I H +      ++       
Sbjct: 23  PNPLCPAKRFEAIRHYASRKAMDIEGLGEKLI 54


>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4
           and 5 {Penicillium sp. [TaxId: 5081]}
          Length = 163

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 65  FVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSG 111
           F  P G+L   G+  LAL +W      + + +    EL+     L+ 
Sbjct: 101 FPVPEGILNYHGTNWLALSLWAQEDNGAKLDSF---ELINTTPVLTS 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,894
Number of extensions: 18753
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)