Query psy9217
Match_columns 90
No_of_seqs 103 out of 202
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 21:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e0q_A COP9 signalosome comple 99.7 9.1E-19 3.1E-23 122.0 4.5 55 15-69 4-60 (141)
2 4b4t_V 26S proteasome regulato 99.7 4.5E-18 1.5E-22 130.7 5.7 70 9-81 17-90 (306)
3 2o95_A 26S proteasome non-ATPa 99.7 2.8E-17 9.7E-22 116.7 4.9 57 13-69 4-61 (187)
4 4b4t_U RPN8, 26S proteasome re 99.6 6.7E-17 2.3E-21 125.2 4.6 54 16-69 5-58 (338)
5 2znr_A AMSH-like protease; met 98.6 1.1E-07 3.7E-12 68.0 6.2 55 14-69 6-60 (178)
6 2kks_A Uncharacterized protein 97.8 6.6E-05 2.3E-09 51.1 7.0 48 19-69 2-49 (146)
7 3rzv_A STAM-binding protein; u 97.6 8.5E-05 2.9E-09 54.8 5.3 53 16-69 41-93 (211)
8 2kcq_A MOV34/MPN/PAD-1 family; 97.6 5.1E-05 1.7E-09 52.0 3.6 46 20-68 2-48 (153)
9 1oi0_A AF2198, hypothetical pr 96.8 0.00074 2.5E-08 44.6 3.0 43 19-69 4-46 (124)
10 2gkw_B Tumor necrosis factor r 34.3 13 0.00044 19.1 0.7 8 62-69 1-8 (26)
11 1d3b_B Protein (small nuclear 22.5 67 0.0023 19.4 2.7 23 42-64 25-47 (91)
12 4emk_B U6 snRNA-associated SM- 22.0 1E+02 0.0034 18.0 3.3 25 41-65 24-48 (75)
13 1h64_1 SnRNP SM-like protein; 21.6 83 0.0028 18.3 2.9 25 41-65 24-48 (75)
14 3s6n_G Small nuclear ribonucle 20.7 87 0.003 18.4 2.9 26 41-66 24-49 (76)
No 1
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.74 E-value=9.1e-19 Score=122.04 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=46.9
Q ss_pred CeeeEEEehhHHHHHHHHhhhcCC--CCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 15 PISYVQMDGLAVMKIVKHCHEEST--NNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 15 ~v~~V~id~lVllKIikH~~~~~~--~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+..+|+|+|+|+|||+|||.|... +.+.+++|+|||...+++||||||||+|+.+
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~ 60 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDV 60 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccC
Confidence 467899999999999999988521 2367999999999999999999999999976
No 2
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.5e-18 Score=130.72 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=55.5
Q ss_pred cccCCCCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-CCEEEEEeeccCCCCCCC-C--cccccchhh
Q psy9217 9 VQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-DNRLEITNCFPFPKNYDE-S--VDEGCYEDS 81 (90)
Q Consensus 9 ~~~~~~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-~~~lEVTn~Fp~P~~~de-~--~~~~~Yq~~ 81 (90)
....+.++++|+|+++|||||+|||++.. |.+|+|.|||... +++|+||||||+|+.+++ . ..+..||.+
T Consensus 17 ~~~~~~~~~~V~is~lallkm~~Ha~~~~---~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~ 90 (306)
T 4b4t_V 17 DTGRDDTKETVYISSIALLKMLKHGRAGV---PMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAK 90 (306)
T ss_dssp CCCCCSSCCEEEECHHHHHHHHHHTCSCS---SSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHH
T ss_pred CCCCCCCCCEEEEeHHHHHHHHHHhcCCC---CceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHH
Confidence 34455679999999999999999999887 7899999999754 568999999999987633 1 223456643
No 3
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.68 E-value=2.8e-17 Score=116.67 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=50.0
Q ss_pred CCCeeeEEEehhHHHHHHHHhhhcCC-CCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 13 ESPISYVQMDGLAVMKIVKHCHEEST-NNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 13 ~~~v~~V~id~lVllKIikH~~~~~~-~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+.++.+|+|+|+|+|||++||.+... ..+.+|+|.|||...+++++||||||+|+.+
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~ 61 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 61 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEE
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcc
Confidence 45789999999999999999988620 1268999999999999999999999999976
No 4
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.7e-17 Score=125.16 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=48.4
Q ss_pred eeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 16 v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
-++|+|||+|+|+|++||.|.....+.+|+|+|||.+.+++|||||||++|+.+
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e 58 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEE 58 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEE
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEecccc
Confidence 468999999999999999984435567999999999999999999999999865
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.57 E-value=1.1e-07 Score=68.01 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCeeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 14 SPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 14 ~~v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
.++..|.|...++.||++||+++. +.+.++.|.|+|...++.++||++|++|..+
T Consensus 6 ~~~~~v~i~~~~l~k~l~hA~~~~-~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~ 60 (178)
T 2znr_A 6 EGLRCVVLPEDLCHKFLQLAESNT-VRGIETCGILCGKLTHNEFTITHVIVPKQSA 60 (178)
T ss_dssp CSCCCEEEETTHHHHHHHHHHHHH-TTTCCCEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred CCcEEEEECHHHHHHHHHHHHhCC-CCCceEEEEEeeEecCCCeEEEEEEeCCcCC
Confidence 468899999999999999999987 3347899999999998999999999999754
No 6
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=97.81 E-value=6.6e-05 Score=51.05 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+.|...++.+|++|+++.. |.++.|.|+|...++.+.|+..||.|...
T Consensus 2 l~i~~~~l~~i~~ha~~~~---p~E~cGlL~G~~~~~~~~v~~~~p~~n~~ 49 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQAL---PNEACGLLGGRRDGDDRWVERVYPLNNLD 49 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHT---TSCEEEEEEEEEETTEEEEEEEECCCCCS
T ss_pred EEECHHHHHHHHHHHHhcC---CcceEEEEEEEEcCCCcEEEEEEECCCcC
Confidence 6789999999999999988 78999999999888889999999999654
No 7
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=97.60 E-value=8.5e-05 Score=54.82 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=46.6
Q ss_pred eeeEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 16 ISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 16 v~~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+..|.|...++-||+.|++.+. +.+.++.|.|+|...++.++|+++|..|..+
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~t-p~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~g 93 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANT-ARGVATCGILCGKLMRNEFTITHVLIPKQSA 93 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHH-HTTCCCEEEEEEEEETTEEEEEEEEECCEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCC-CCCceEEEEEEeEcCCCCEEEEEEEeCCccC
Confidence 5789999999999999999986 3347899999999999999999999877654
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=97.57 E-value=5.1e-05 Score=51.97 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=41.9
Q ss_pred EEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEe-CCEEEEEeeccCCCC
Q psy9217 20 QMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVV-DNRLEITNCFPFPKN 68 (90)
Q Consensus 20 ~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~-~~~lEVTn~Fp~P~~ 68 (90)
+|...++.+|++|+++.. |.++.|.|+|... ++++.|+..||.|..
T Consensus 2 ~i~~~~l~~i~~ha~~~~---p~E~cGlL~G~~~~~~~~~v~~~~p~~n~ 48 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAY---PEEGCGFLLGTVTDDGDNRVAALHRATNR 48 (153)
T ss_dssp BCCHHHHHHHHHHHHHHT---TSCCCEEEEEEECTTSCEEEEEEEESSCC
T ss_pred EeCHHHHHHHHHHHHhcC---CcceEEEEEEeeccCCCeEEEEEEECCCC
Confidence 577889999999999988 7899999999987 788999999999986
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=96.83 E-value=0.00074 Score=44.64 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=38.4
Q ss_pred EEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 19 V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+.|...++.+|++|+++.. |.++.|.|+|... .|+..|++| +.
T Consensus 4 v~i~~~~l~~i~~ha~~~~---P~E~cGlL~g~~~----~v~~~~~~p-~~ 46 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAH---PDEFIALLSGSKD----VMDELIFLP-FV 46 (124)
T ss_dssp CEECHHHHHHHHHHHHHHT---TSCCEEEEEESTT----EECEEEECC-CC
T ss_pred EEEcHHHHHHHHHHHHhcC---CCeeEEEEecccC----EEEEEEECC-CC
Confidence 6789999999999999998 7899999999763 889999999 53
No 10
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=34.27 E-value=13 Score=19.05 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=6.7
Q ss_pred eccCCCCC
Q psy9217 62 CFPFPKNY 69 (90)
Q Consensus 62 ~Fp~P~~~ 69 (90)
|||||..+
T Consensus 1 sfPlPa~e 8 (26)
T 2gkw_B 1 SVPVPATE 8 (26)
T ss_pred CCcccccc
Confidence 79999875
No 11
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=22.55 E-value=67 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=18.7
Q ss_pred ceeeeEEeeeEeCCEEEEEeecc
Q psy9217 42 EVAQGALLGLVVDNRLEITNCFP 64 (90)
Q Consensus 42 ~~v~G~LLG~~~~~~lEVTn~Fp 64 (90)
....|.|.|+|.---|-..||.-
T Consensus 25 r~~~G~L~~~D~~mNlvL~d~~E 47 (91)
T 1d3b_B 25 RIFIGTFKAFDKHMNLILCDCDE 47 (91)
T ss_dssp CEEEEEEEECCTTCCEEEEEEEE
T ss_pred eEEEEEEEEECCCCeEEecCEEE
Confidence 57999999999877777777754
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=22.00 E-value=1e+02 Score=18.05 Aligned_cols=25 Identities=16% Similarity=-0.051 Sum_probs=20.1
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
.....|.|.|+|.--.|...||.-+
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~e~ 48 (75)
T 4emk_B 24 GVDYKGILSCLDGYMNLALERTEEY 48 (75)
T ss_dssp SCEEEEEEEEECTTCEEEEEEEEEE
T ss_pred CcEEEEEEEEEcCcceEEEccEEEE
Confidence 3679999999998777877777544
No 13
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=21.64 E-value=83 Score=18.29 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=19.3
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
.....|.|.|+|.--.+...||.-.
T Consensus 24 g~~~~G~L~~~D~~mNlvL~d~~e~ 48 (75)
T 1h64_1 24 GFEFRGRLIGYDIHLNVVLADAEMI 48 (75)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCEEEEEEEEEeCCCCeEEeeEEEE
Confidence 3679999999998777777776544
No 14
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=20.75 E-value=87 Score=18.43 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.2
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccCC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPFP 66 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~P 66 (90)
.....|.|.|+|.---|-..||.-+-
T Consensus 24 gr~~~G~L~~~D~~mNlvL~~~~e~~ 49 (76)
T 3s6n_G 24 GRHVQGILRGFDPFMNLVIDECVEMA 49 (76)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEEECC
T ss_pred CcEEEEEEEEECCcceEEEeceEEEc
Confidence 36799999999988888888886654
Done!