Query psy9217
Match_columns 90
No_of_seqs 103 out of 202
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 21:54:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oi0a_ c.97.3.1 (A:) Hypothet 95.3 0.0061 4.5E-07 39.1 3.2 45 18-69 3-47 (121)
2 d1h641_ b.38.1.1 (1:) Archaeal 33.8 17 0.0013 19.8 2.9 24 41-64 22-45 (71)
3 d1th7a1 b.38.1.1 (A:3-78) Arch 28.6 23 0.0017 19.6 2.9 26 41-66 27-52 (76)
4 d1mgqa_ b.38.1.1 (A:) Archaeal 27.5 24 0.0018 19.4 2.8 25 41-65 26-50 (74)
5 d1i4k1_ b.38.1.1 (1:) Archaeal 27.4 23 0.0017 19.4 2.7 24 42-65 24-47 (72)
6 d1i8fa_ b.38.1.1 (A:) Archaeal 27.3 22 0.0016 19.6 2.6 24 42-65 23-46 (71)
7 d1d3bb_ b.38.1.1 (B:) B core S 27.2 23 0.0017 19.9 2.7 24 42-65 19-42 (81)
8 d1biaa2 b.34.1.1 (A:271-317) B 26.3 22 0.0016 18.3 2.3 19 42-60 13-31 (47)
9 d1d3ba_ b.38.1.1 (A:) D3 core 20.0 45 0.0032 18.2 2.9 26 41-66 22-47 (72)
10 d1ljoa_ b.38.1.1 (A:) Archaeal 16.4 52 0.0038 18.2 2.7 23 43-65 28-50 (75)
No 1
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=95.32 E-value=0.0061 Score=39.11 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=38.5
Q ss_pred eEEEehhHHHHHHHHhhhcCCCCcceeeeEEeeeEeCCEEEEEeeccCCCCC
Q psy9217 18 YVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFPKNY 69 (90)
Q Consensus 18 ~V~id~lVllKIikH~~~~~~~~~~~v~G~LLG~~~~~~lEVTn~Fp~P~~~ 69 (90)
+++|..-++-.|++||++.+ |.++.|.|+|-. + .|+..++.|...
T Consensus 3 ~l~I~~~~l~~i~~hA~~~~---P~E~cGlL~G~~--~--~i~~~~~~~n~~ 47 (121)
T d1oi0a_ 3 SMKISRGLLKTILEAAKSAH---PDEFIALLSGSK--D--VMDELIFLPFVS 47 (121)
T ss_dssp SCEECHHHHHHHHHHHHHHT---TSCCEEEEEEST--T--EECEEEECCCCC
T ss_pred eEEECHHHHHHHHHHHHhcC---CceeEEEEEecC--C--cEEEEEEcCCCC
Confidence 57899999999999999999 789999999953 3 467888888764
No 2
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=33.78 E-value=17 Score=19.82 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.5
Q ss_pred cceeeeEEeeeEeCCEEEEEeecc
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFP 64 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp 64 (90)
.....|+|.|+|..-.|..+||.-
T Consensus 22 g~~~~G~L~~~D~~mNlvL~~~~e 45 (71)
T d1h641_ 22 GFEFRGRLIGYDIHLNVVLADAEM 45 (71)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEEE
T ss_pred CCEEEEEEEEECCCCCeEEeeEEE
Confidence 367999999999998999999853
No 3
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.59 E-value=23 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=21.6
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccCC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPFP 66 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~P 66 (90)
.....|.|.|+|..--|-++||--..
T Consensus 27 g~~~~G~L~~~D~~mNlvL~~~~e~~ 52 (76)
T d1th7a1 27 NKEVRGMLRSYDQHMNLVLSDSEEIQ 52 (76)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred CCEEEEEEEEECCCCCEEEeEEEEEe
Confidence 36799999999998889999986443
No 4
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.46 E-value=24 Score=19.42 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.7
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
.....|.|.|+|..-.|...||.-.
T Consensus 26 g~~~~G~L~~~D~~mNl~L~~~~e~ 50 (74)
T d1mgqa_ 26 DREFRGVLKSFDLHMNLVLNDAEEL 50 (74)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCEEEEEEEEECCCCCeEEeeEEEE
Confidence 3679999999999999999999754
No 5
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=27.41 E-value=23 Score=19.39 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.9
Q ss_pred ceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 42 EVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 42 ~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
....|.|.|+|.---|-..||.-.
T Consensus 24 ~~~~G~L~~~D~~mNlvL~~~~e~ 47 (72)
T d1i4k1_ 24 REFRGTLDGYDIHMNLVLLDAEEI 47 (72)
T ss_dssp CEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CEEEEEEEEEcCCCCeEEeeEEEE
Confidence 579999999999999999999644
No 6
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=27.32 E-value=22 Score=19.63 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=21.2
Q ss_pred ceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 42 EVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 42 ~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
....|.|.|+|..-.|..+||.-.
T Consensus 23 ~~~~G~L~~~D~~mNivL~~~~e~ 46 (71)
T d1i8fa_ 23 HEIRGILRSFDQHVNLLLEDAEEI 46 (71)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CEEEEEEEEECCCcceEEccEEEE
Confidence 578999999999999999999654
No 7
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.22 E-value=23 Score=19.90 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.9
Q ss_pred ceeeeEEeeeEeCCEEEEEeeccC
Q psy9217 42 EVAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 42 ~~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
....|.|.|+|....|-.+||.-+
T Consensus 19 R~~~G~L~~~D~~~NlvL~~~~E~ 42 (81)
T d1d3bb_ 19 RIFIGTFKAFDKHMNLILCDCDEF 42 (81)
T ss_dssp CEEEEEEEECCTTCCEEEEEEEEE
T ss_pred CEEEEEEEEECCccCEEEcCEEEE
Confidence 478999999999999999998754
No 8
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.33 E-value=22 Score=18.27 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=16.3
Q ss_pred ceeeeEEeeeEeCCEEEEE
Q psy9217 42 EVAQGALLGLVVDNRLEIT 60 (90)
Q Consensus 42 ~~v~G~LLG~~~~~~lEVT 60 (90)
..+.|...|++.+|.|-|.
T Consensus 13 ~~i~G~a~gId~~G~Lll~ 31 (47)
T d1biaa2 13 KEIFGISRGIDKQGALLLE 31 (47)
T ss_dssp EEEEEEEEEECTTSCEEEE
T ss_pred eEEEEEEeeECCCCcEEEE
Confidence 5789999999999998764
No 9
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.98 E-value=45 Score=18.20 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=21.6
Q ss_pred cceeeeEEeeeEeCCEEEEEeeccCC
Q psy9217 41 IEVAQGALLGLVVDNRLEITNCFPFP 66 (90)
Q Consensus 41 ~~~v~G~LLG~~~~~~lEVTn~Fp~P 66 (90)
...+.|+|.+.|..-.+..+||--..
T Consensus 22 g~~~~G~L~~~D~~mNi~L~~~~~~~ 47 (72)
T d1d3ba_ 22 GEVYRGKLIEAEDNMNCQMSNITVTY 47 (72)
T ss_dssp SCEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred CeEEEEEEEEEcCCeeEEEEEEEEEc
Confidence 36799999999998889999986443
No 10
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=16.43 E-value=52 Score=18.15 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.5
Q ss_pred eeeeEEeeeEeCCEEEEEeeccC
Q psy9217 43 VAQGALLGLVVDNRLEITNCFPF 65 (90)
Q Consensus 43 ~v~G~LLG~~~~~~lEVTn~Fp~ 65 (90)
...|.|.|+|.---|..+||--.
T Consensus 28 ~~~G~L~~~D~~mNlvL~~~~e~ 50 (75)
T d1ljoa_ 28 QLVGKLEGVDDYMNLYLTNAMEC 50 (75)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCcEEEeEEEEE
Confidence 58999999999888888888544
Done!