RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9217
         (90 letters)



>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
          JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
          ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
          Length = 187

 Score = 58.9 bits (142), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 13 ESPISYVQMDGLAVMKIVKHCHEES-TNNIEVAQGALLGLVVDNRLEITNCFPFPKNYDE 71
          E  +  V +  L ++ +V H +      N +   G LLG      L+++N F  P + D+
Sbjct: 4  ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDD 63

Query: 72 SVDEGCYEDSE 82
            D   + D +
Sbjct: 64 KDDSVWFLDHD 74


>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
          N-terminal) domain, unknown function; 2.50A {Drosophila
          melanogaster}
          Length = 141

 Score = 51.0 bits (122), Expect = 8e-10
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQ--GALLGLVVDNRLEITNCFPFPKNYDESVDEG 76
          + +  L +M I +H       + E  Q  GAL+G      +EI N F    +        
Sbjct: 8  ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI 67

Query: 77 CYE 79
            +
Sbjct: 68 NKD 70


>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
          hydrolase, metal-binding, metalloprotease, UBL
          conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
          2znv_A
          Length = 178

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          V +      K ++     +   IE   G L G +  N   IT+     
Sbjct: 11 VVLPEDLCHKFLQLAESNTVRGIETC-GILCGKLTHNEFTITHVIVPK 57


>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
          deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
          PDB: 3rzu_A
          Length = 211

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITNCFPFP 66
          V + G    + ++     +   +    G L G ++ N   IT+     
Sbjct: 44 VVVPGRLCPQFLQLASANTARGVATC-GILCGKLMRNEFTITHVLIPK 90


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.060
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 9    VQIDESPISYVQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNRLEITN 61
            V  DE   S   M  +   ++     +E+   +    G   G +V    EI N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----EIVN 1845



 Score = 26.2 bits (57), Expect = 1.9
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 47   ALLGLVVDNRLEITNCFPFPK------NYDESVDEGCYEDS 81
            ++L +V++N + +T  F   K      NY   + E   +  
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700


>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics,
          PSI-2, protein structure initiative; NMR {Salinibacter
          ruber dsm 13855}
          Length = 153

 Score = 27.4 bits (60), Expect = 0.59
 Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 19 VQMDGLAVMKIVKHCHEESTNNIEVAQGALLGLVVDNR-LEITNCFPFPKNYDESVDEGC 77
          ++     + +I  H  +      E   G LLG V D+    +           E      
Sbjct: 1  MKTTPDILDQIRVHGADAYPE--EGC-GFLLGTVTDDGDNRVAALHRATNRRSEQRTRRY 57

Query: 78 YEDSETLSR 86
             ++    
Sbjct: 58 ELTADDYRA 66


>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
          dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
          2.57A {Rhodopseudomonas palustris}
          Length = 476

 Score = 25.6 bits (57), Expect = 2.8
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)

Query: 26 VMKIVKHCHEESTNNIE-VAQGALLGLV 52
          V+ I K  +E     +  V QG   GLV
Sbjct: 64 VVAICKLANE---ARVALVPQGGNTGLV 88


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 3.9
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 9   VQIDESPISYV--QMDGLAVMKIVKHCHEESTNNIEVAQGA--LLGLVVDNRLE------ 58
             I    +S +   +    VM +V   H+ S    +  +    +  + ++ +++      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 59  ----ITNCFPFPKNYD 70
               I + +  PK +D
Sbjct: 445 LHRSIVDHYNIPKTFD 460


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,254,019
Number of extensions: 59378
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 10
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)