RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9217
         (90 letters)



>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 241

 Score = 25.3 bits (54), Expect = 1.3
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 63  FPFPKNYDE----SVDEGCYEDSETLSRGKHK 90
            P   N       S  +GCY   E ++R K +
Sbjct: 208 IPQATNLQALGGISFKKGCYTGQEMVARAKFR 239


>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 181

 Score = 23.6 bits (50), Expect = 4.6
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 39  NNIEVAQGALLGLVVDNRLEITNCFPFPKNYDESVDEGCYEDSET 83
             IEV +   + +   N L  T+  P       S  +    + +T
Sbjct: 57  PTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKT 101


>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193
          {Anabaena variabilis [TaxId: 1172]}
          Length = 128

 Score = 23.0 bits (49), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 3  TSRVSRVQIDESPISYVQMDGLAVMKIVK 31
          T+RV+ V I  + + Y +  G+  M+  K
Sbjct: 55 TTRVAEVNIMSTTVEYPRASGVWQMRTTK 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 298,790
Number of extensions: 10599
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)