BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy922
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JXP|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(pqqb) From Pseudomonas Putida
Length = 321
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 168 TLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFV 227
TLK ART + + LSD + + C + QL + F + R LR DTG
Sbjct: 33 TLKATARTQSSIALSDDGVHWILCNASPDIRAQL--QAFAPMQPARALR------DTG-- 82
Query: 228 KFIESIVLSDDEV 240
I +IVL D ++
Sbjct: 83 --INAIVLLDSQI 93
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFI 207
+ V+D +F + DEN DGQLS EF+
Sbjct: 147 EEVVDRIFLLVDENGDGQLSLNEFV 171
>pdb|2CCM|A Chain A, X-Ray Structure Of Calexcitin From Loligo Pealeii At
1.8a
pdb|2CCM|B Chain B, X-Ray Structure Of Calexcitin From Loligo Pealeii At
1.8a
Length = 191
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEK 61
+D N DG ++ D+FE I S T + H + + L Y EN+DE+
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY-ADENEDEQ 80
Query: 62 LTIEKFLDFQHQLQKEI 78
+T E++L + K +
Sbjct: 81 VTKEEWLKMWAECVKSV 97
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 152 TALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
+A +++ G+ ITL + + L D ID + D++ DGQ+ EF A+M+
Sbjct: 86 SAFSYFDKDGSGY--ITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMR 143
Query: 212 NR 213
R
Sbjct: 144 KR 145
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 133 SKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRIT---LKHVARTVAHVELSDHVIDVV 189
+KED+ K + N+++D D L F+H+ RIT K +A HV V V
Sbjct: 11 TKEDWEKIYQLYNSLSDEDLYLRFFHLY-----RITEEDAKKIASNEDHVTFLAEVDGKV 65
Query: 190 FCIFDENQDGQLS 202
++DG+ S
Sbjct: 66 VGEASLHKDGEFS 78
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 133 SKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCI 192
+KE+ LK F ++ D ++F + LK VA+ + L+D + +
Sbjct: 77 TKEEILKAFKLFDD--DETGKISFKN----------LKRVAKELGE-NLTDEELQEMIDE 123
Query: 193 FDENQDGQLSNREFIAVMKN 212
D + DG++S +EF+ +MK
Sbjct: 124 ADRDGDGEVSEQEFLRIMKK 143
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 126 KENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHV 185
+ENK G++ ++ + ++ + +V T+ ID+ LK A + A LSD
Sbjct: 55 RENKAGVNFSEFTGVWKYITDWQNV--FRTYDRDNSGMIDKNELKQ-ALSGAGYRLSDQF 111
Query: 186 IDVVFCIFDENQDGQLSNREFI 207
D++ FD GQ++ +FI
Sbjct: 112 HDILIRKFDRQGRGQIAFDDFI 133
>pdb|1ODB|A Chain A, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|B Chain B, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|C Chain C, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|D Chain D, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|E Chain E, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|F Chain F, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|2WC8|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|C Chain C, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|D Chain D, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCF|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCF|B Chain B, Calcium-Free (Apo) S100a12
pdb|2WCF|C Chain C, Calcium-Free (Apo) S100a12
pdb|2WCF|D Chain D, Calcium-Free (Apo) S100a12
pdb|2WCF|E Chain E, Calcium-Free (Apo) S100a12
pdb|2WCF|F Chain F, Calcium-Free (Apo) S100a12
Length = 95
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 159 IAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
++ + ++ K +A T+ +++ VID +F D NQD Q+ +EFI+++
Sbjct: 31 LSKGELKQLLTKELANTIKNIK-DKAVIDEIFQGLDANQDEQVDFQEFISLV 81
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 172 VARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVK 228
+A + +LS +I F +FD + DG+++ E V+ N RG +D VK
Sbjct: 113 LAAAIDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVK 169
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 133 SKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCI 192
+KE+ LK F ++ D ++F + LK VA+ + L+D + +
Sbjct: 9 TKEEILKAFKLFDD--DETGKISFKN----------LKRVAKELGE-NLTDEELQEMIDE 55
Query: 193 FDENQDGQLSNREFIAVMKNRLL 215
D + DG++S +EF+ +MK L
Sbjct: 56 ADRDGDGEVSEQEFLRIMKKTSL 78
>pdb|1E8A|A Chain A, The Three-Dimensional Structure Of Human S100a12
pdb|1E8A|B Chain B, The Three-Dimensional Structure Of Human S100a12
pdb|1GQM|A Chain A, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|B Chain B, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|C Chain C, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|D Chain D, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|E Chain E, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|F Chain F, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|G Chain G, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|H Chain H, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|I Chain I, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|J Chain J, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|K Chain K, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|L Chain L, The Structure Of S100a12 In A Hexameric Form
Length = 91
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 159 IAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
++ + ++ K +A T+ +++ VID +F D NQD Q+ +EFI+++
Sbjct: 27 LSKGELKQLLTKELANTIKNIK-DKAVIDEIFQGLDANQDEQVDFQEFISLV 77
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 189 VFCIFDENQDGQLSNREFIAVM 210
VF +FDEN+DG++ EFI +
Sbjct: 68 VFNVFDENKDGRIEFSEFIQAL 89
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 136 DYLKFFHFLNNINDVDT--ALTFYH-IAGASIDRITLKHVARTVAHVELSDHVIDVVFCI 192
D + HFL N D D A+ F + G SI + R H +L F +
Sbjct: 126 DATTYAHFLFNAFDADGNGAIHFEDFVVGLSI-------LLRGTVHEKLK-----WAFNL 173
Query: 193 FDENQDGQLSNREFIAVMKN 212
+D N+DG ++ E +A+MK+
Sbjct: 174 YDINKDGCITKEEMLAIMKS 193
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 172 VARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVK 228
+A + +LS +I F +FD + DG+++ E ++ N +G +D VK
Sbjct: 110 IAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVK 166
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 130 LGISKEDYLKFFHFLNNI---NDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVI 186
+GI K D+ + FH+ N I D D A F S D + A +A +H
Sbjct: 187 MGIPKADHQRIFHWTNVILGFGDPDLATDFDEFMQVSAD---IGAYATALAEDRRVNHHD 243
Query: 187 DVVFCIFDENQDGQ-LSNREF 206
D+ + + DG+ LS+RE
Sbjct: 244 DLTSSLVEAEVDGERLSSREI 264
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 169 LKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLL 215
LK VA+ + L+D + + D + DG++S +EF+ +MK L
Sbjct: 43 LKRVAKELGE-NLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTSL 88
>pdb|2WCE|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCE|B Chain B, Calcium-Free (Apo) S100a12
Length = 95
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 159 IAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
++ + ++ K +A T+ +++ VID +F D NQD Q+ +EFI+ +
Sbjct: 31 LSKGELKQLLTKELANTIKNIK-DKAVIDEIFQGLDANQDEQVDFQEFISXV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,937,816
Number of Sequences: 62578
Number of extensions: 272967
Number of successful extensions: 1156
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 97
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)