Query psy922
Match_columns 243
No_of_seqs 320 out of 2070
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:57:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2643|consensus 100.0 2.4E-43 5.2E-48 298.5 19.1 242 1-242 241-483 (489)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 8.3E-21 1.8E-25 144.6 14.0 133 75-212 18-156 (160)
3 KOG0027|consensus 99.8 4.1E-20 9E-25 142.3 14.7 134 75-212 6-149 (151)
4 KOG0027|consensus 99.8 5.5E-20 1.2E-24 141.6 8.3 123 1-142 16-148 (151)
5 COG5126 FRQ1 Ca2+-binding prot 99.8 8.8E-20 1.9E-24 139.0 9.0 121 1-141 28-154 (160)
6 KOG0028|consensus 99.8 4E-18 8.7E-23 127.3 13.8 134 75-212 31-170 (172)
7 KOG0037|consensus 99.8 2.2E-18 4.8E-23 135.3 12.1 149 2-210 66-218 (221)
8 KOG0028|consensus 99.7 2E-17 4.3E-22 123.6 9.8 123 1-142 41-169 (172)
9 PTZ00184 calmodulin; Provision 99.7 9.4E-17 2E-21 122.6 13.6 134 75-212 9-148 (149)
10 PTZ00183 centrin; Provisional 99.7 2.2E-16 4.8E-21 121.9 15.2 133 75-212 15-154 (158)
11 KOG0031|consensus 99.6 1.5E-14 3.2E-19 107.6 15.4 132 72-211 27-164 (171)
12 PTZ00183 centrin; Provisional 99.6 1.8E-15 3.9E-20 116.8 10.3 123 1-142 25-153 (158)
13 PTZ00184 calmodulin; Provision 99.6 3.2E-15 6.9E-20 114.1 10.3 122 1-141 19-146 (149)
14 KOG0034|consensus 99.6 2.1E-14 4.6E-19 113.1 14.4 133 75-213 31-176 (187)
15 KOG0034|consensus 99.6 2.1E-14 4.6E-19 113.1 11.8 121 2-142 42-174 (187)
16 KOG0030|consensus 99.5 1.5E-13 3.2E-18 100.6 10.3 131 76-211 10-150 (152)
17 KOG0030|consensus 99.5 1.3E-13 2.8E-18 100.9 7.8 120 1-140 19-148 (152)
18 KOG0044|consensus 99.5 9E-13 1.9E-17 104.0 12.8 137 75-213 24-176 (193)
19 KOG0037|consensus 99.5 1.2E-12 2.6E-17 103.2 12.4 128 78-212 58-188 (221)
20 KOG4223|consensus 99.5 6.5E-13 1.4E-17 110.3 10.9 188 1-208 85-301 (325)
21 KOG0031|consensus 99.5 7.4E-13 1.6E-17 98.6 10.0 118 1-141 40-163 (171)
22 KOG0044|consensus 99.4 6.3E-13 1.4E-17 104.9 9.8 123 5-142 39-174 (193)
23 KOG0036|consensus 99.4 1.8E-12 3.8E-17 110.7 9.4 122 2-142 23-145 (463)
24 KOG0036|consensus 99.3 7.2E-11 1.6E-15 101.0 13.2 131 76-212 13-146 (463)
25 KOG0751|consensus 99.2 8.3E-11 1.8E-15 102.5 10.8 193 1-211 116-313 (694)
26 PF13499 EF-hand_7: EF-hand do 99.2 5.4E-11 1.2E-15 78.3 6.0 64 78-141 1-66 (66)
27 KOG4223|consensus 99.2 2.7E-10 5.8E-15 94.9 10.2 157 53-213 49-229 (325)
28 cd05022 S-100A13 S-100A13: S-1 99.1 1.4E-10 3.1E-15 80.7 6.8 68 147-214 7-77 (89)
29 PF13833 EF-hand_8: EF-hand do 99.1 1.4E-10 3E-15 73.2 6.0 52 161-213 2-54 (54)
30 KOG0038|consensus 99.0 1E-09 2.2E-14 81.3 7.5 95 119-213 74-178 (189)
31 PLN02964 phosphatidylserine de 99.0 3.9E-09 8.5E-14 97.3 13.0 100 75-212 141-243 (644)
32 cd05027 S-100B S-100B: S-100B 99.0 2.9E-09 6.3E-14 74.1 7.5 68 147-214 7-81 (88)
33 cd05022 S-100A13 S-100A13: S-1 99.0 2.5E-09 5.4E-14 74.4 6.7 63 77-142 8-74 (89)
34 PF13499 EF-hand_7: EF-hand do 98.9 2.1E-09 4.5E-14 70.6 5.8 60 150-210 2-66 (66)
35 KOG2643|consensus 98.9 1.2E-08 2.6E-13 88.1 11.7 154 53-211 207-383 (489)
36 KOG0038|consensus 98.9 1.2E-08 2.6E-13 75.6 9.1 90 52-141 78-175 (189)
37 KOG0377|consensus 98.9 2E-08 4.3E-13 86.9 11.3 131 78-213 465-616 (631)
38 cd05026 S-100Z S-100Z: S-100Z 98.9 1.5E-08 3.3E-13 71.3 7.9 68 147-214 9-83 (93)
39 cd05027 S-100B S-100B: S-100B 98.8 1.2E-08 2.6E-13 71.0 7.0 62 78-142 9-78 (88)
40 PLN02964 phosphatidylserine de 98.8 4.3E-09 9.4E-14 97.0 5.8 88 1-105 151-243 (644)
41 cd05029 S-100A6 S-100A6: S-100 98.8 2.5E-08 5.4E-13 69.4 8.0 64 150-213 12-80 (88)
42 cd05031 S-100A10_like S-100A10 98.8 2.6E-08 5.7E-13 70.3 7.5 66 148-213 8-80 (94)
43 smart00027 EH Eps15 homology d 98.8 3.1E-08 6.8E-13 70.1 7.6 64 75-142 8-71 (96)
44 cd00213 S-100 S-100: S-100 dom 98.8 3.7E-08 7.9E-13 68.6 7.8 68 147-214 7-81 (88)
45 cd05026 S-100Z S-100Z: S-100Z 98.7 3E-08 6.6E-13 69.8 6.6 62 78-142 11-80 (93)
46 cd00052 EH Eps15 homology doma 98.7 4.3E-08 9.4E-13 64.3 7.0 59 80-142 2-60 (67)
47 PF00036 EF-hand_1: EF hand; 98.7 1.1E-08 2.4E-13 55.7 3.3 28 185-212 1-28 (29)
48 cd05025 S-100A1 S-100A1: S-100 98.7 4.2E-08 9E-13 68.9 6.8 68 147-214 8-82 (92)
49 cd05025 S-100A1 S-100A1: S-100 98.7 8.6E-08 1.9E-12 67.3 7.4 63 77-142 9-79 (92)
50 smart00027 EH Eps15 homology d 98.7 1.9E-07 4.1E-12 66.1 8.8 74 149-225 11-87 (96)
51 cd05031 S-100A10_like S-100A10 98.7 8.6E-08 1.9E-12 67.6 6.9 63 77-142 8-78 (94)
52 cd05023 S-100A11 S-100A11: S-1 98.7 1.2E-07 2.6E-12 66.0 7.5 66 149-214 10-82 (89)
53 cd05030 calgranulins Calgranul 98.6 1.4E-07 2.9E-12 65.8 7.2 54 161-214 24-81 (88)
54 cd00052 EH Eps15 homology doma 98.6 3.4E-07 7.3E-12 59.9 7.1 59 152-213 3-62 (67)
55 cd00213 S-100 S-100: S-100 dom 98.6 3.2E-07 6.8E-12 63.8 7.2 65 75-142 6-78 (88)
56 cd05029 S-100A6 S-100A6: S-100 98.5 2.9E-07 6.4E-12 64.0 6.6 62 78-142 11-78 (88)
57 cd00252 SPARC_EC SPARC_EC; ext 98.5 1E-06 2.2E-11 64.4 7.9 61 74-141 45-106 (116)
58 cd05023 S-100A11 S-100A11: S-1 98.5 6.4E-07 1.4E-11 62.4 6.6 63 77-142 9-79 (89)
59 cd00051 EFh EF-hand, calcium b 98.4 1.3E-06 2.7E-11 55.5 7.2 59 151-210 3-62 (63)
60 KOG0751|consensus 98.4 2.3E-06 4.9E-11 75.3 10.1 153 50-207 79-239 (694)
61 KOG0041|consensus 98.4 1.7E-06 3.7E-11 67.6 8.4 74 64-142 87-162 (244)
62 cd00051 EFh EF-hand, calcium b 98.4 1.7E-06 3.6E-11 54.9 6.7 59 79-141 2-62 (63)
63 PF14658 EF-hand_9: EF-hand do 98.4 1.3E-06 2.8E-11 56.5 5.7 62 152-213 2-65 (66)
64 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.9E-06 4.2E-11 62.9 7.0 59 148-211 48-107 (116)
65 cd05024 S-100A10 S-100A10: A s 98.3 3.6E-06 7.7E-11 58.4 7.7 52 162-213 22-77 (91)
66 PF00036 EF-hand_1: EF hand; 98.3 5.5E-07 1.2E-11 48.9 2.7 27 79-105 2-28 (29)
67 KOG4251|consensus 98.3 1.9E-06 4.1E-11 69.5 6.7 134 76-212 100-264 (362)
68 KOG4251|consensus 98.3 5.4E-06 1.2E-10 66.9 9.0 190 2-208 110-341 (362)
69 PF13833 EF-hand_8: EF-hand do 98.3 1.9E-06 4.1E-11 54.1 4.9 50 90-142 1-52 (54)
70 KOG0377|consensus 98.2 8.8E-06 1.9E-10 70.8 9.8 120 2-143 473-615 (631)
71 PF13202 EF-hand_5: EF hand; P 98.2 1.3E-06 2.7E-11 45.8 2.7 25 186-210 1-25 (25)
72 KOG0040|consensus 98.2 2.2E-05 4.7E-10 76.9 11.7 125 78-210 2254-2396(2399)
73 PF14658 EF-hand_9: EF-hand do 98.1 7.4E-06 1.6E-10 53.0 5.4 58 82-142 3-63 (66)
74 KOG4666|consensus 98.1 5.6E-06 1.2E-10 69.3 5.6 91 50-143 264-359 (412)
75 KOG0040|consensus 98.1 1.7E-05 3.6E-10 77.7 9.4 123 2-140 2262-2395(2399)
76 PF13405 EF-hand_6: EF-hand do 98.0 4.3E-06 9.3E-11 46.2 2.6 27 78-104 1-27 (31)
77 cd05030 calgranulins Calgranul 98.0 2.1E-05 4.5E-10 54.7 6.4 62 78-142 9-78 (88)
78 KOG2562|consensus 97.9 2.3E-05 5E-10 68.7 6.8 116 2-139 287-420 (493)
79 PF13405 EF-hand_6: EF-hand do 97.9 1.5E-05 3.2E-10 44.0 3.0 27 186-212 2-28 (31)
80 PF13202 EF-hand_5: EF hand; P 97.8 1.5E-05 3.3E-10 41.6 2.2 25 79-103 1-25 (25)
81 PF14788 EF-hand_10: EF hand; 97.8 6E-05 1.3E-09 46.1 5.0 48 164-212 2-49 (51)
82 KOG0041|consensus 97.7 0.00011 2.5E-09 57.6 6.8 79 134-215 87-166 (244)
83 KOG2562|consensus 97.6 0.0012 2.5E-08 58.3 12.3 163 48-214 142-345 (493)
84 PF12763 EF-hand_4: Cytoskelet 97.6 0.00012 2.6E-09 52.4 4.7 51 160-213 22-72 (104)
85 PRK12309 transaldolase/EF-hand 97.3 0.00053 1.1E-08 60.5 6.5 51 150-214 336-387 (391)
86 PF12763 EF-hand_4: Cytoskelet 97.3 0.00085 1.8E-08 48.0 6.4 63 76-143 9-71 (104)
87 cd05024 S-100A10 S-100A10: A s 97.3 0.002 4.3E-08 44.7 7.3 61 78-142 9-75 (91)
88 smart00054 EFh EF-hand, calciu 97.2 0.00042 9.1E-09 36.2 3.1 27 186-212 2-28 (29)
89 KOG0169|consensus 97.2 0.0082 1.8E-07 56.1 12.8 133 78-213 137-275 (746)
90 PRK12309 transaldolase/EF-hand 97.1 0.00075 1.6E-08 59.6 4.6 53 76-143 333-385 (391)
91 KOG4065|consensus 96.7 0.0039 8.5E-08 44.7 5.2 59 81-139 71-141 (144)
92 smart00054 EFh EF-hand, calciu 96.6 0.003 6.5E-08 32.7 3.1 27 79-105 2-28 (29)
93 KOG4666|consensus 96.6 0.0045 9.7E-08 52.3 5.3 115 90-213 240-360 (412)
94 PF14788 EF-hand_10: EF hand; 96.5 0.0058 1.3E-07 37.4 4.1 44 62-105 2-49 (51)
95 PF09279 EF-hand_like: Phospho 96.1 0.012 2.7E-07 40.1 4.7 62 152-213 4-70 (83)
96 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0033 7E-08 45.8 1.5 59 76-139 53-112 (113)
97 KOG0046|consensus 95.9 0.028 6.1E-07 50.6 7.1 63 78-141 20-83 (627)
98 KOG1707|consensus 95.9 0.11 2.3E-06 47.7 10.6 134 77-213 195-344 (625)
99 KOG4065|consensus 95.5 0.024 5.2E-07 40.8 4.1 24 186-209 119-142 (144)
100 KOG0046|consensus 95.3 0.043 9.4E-07 49.4 6.1 65 152-216 23-89 (627)
101 PF09279 EF-hand_like: Phospho 95.1 0.07 1.5E-06 36.2 5.5 63 79-142 2-68 (83)
102 KOG0169|consensus 94.7 0.12 2.6E-06 48.7 7.4 124 2-142 145-273 (746)
103 PF10591 SPARC_Ca_bdg: Secrete 94.4 0.012 2.6E-07 42.7 0.2 52 154-208 60-112 (113)
104 PF05042 Caleosin: Caleosin re 94.2 0.7 1.5E-05 35.9 9.4 100 2-105 16-124 (174)
105 PLN02952 phosphoinositide phos 93.8 0.63 1.4E-05 43.5 10.0 84 58-142 13-109 (599)
106 PLN02952 phosphoinositide phos 93.7 0.6 1.3E-05 43.6 9.8 84 129-212 14-110 (599)
107 PF05517 p25-alpha: p25-alpha 93.6 0.55 1.2E-05 36.0 8.1 53 162-214 17-71 (154)
108 KOG2243|consensus 93.4 0.12 2.6E-06 51.7 4.7 58 81-141 4061-4118(5019)
109 KOG0035|consensus 89.1 2.1 4.6E-05 41.6 8.2 96 75-171 745-848 (890)
110 KOG1029|consensus 89.0 0.57 1.2E-05 44.4 4.3 61 77-142 195-256 (1118)
111 KOG1955|consensus 87.7 1.4 3E-05 39.8 5.7 64 75-143 229-293 (737)
112 KOG1029|consensus 87.1 1.5 3.3E-05 41.7 5.8 63 160-225 208-272 (1118)
113 KOG3555|consensus 87.1 0.4 8.8E-06 41.2 2.0 58 48-105 253-310 (434)
114 KOG1955|consensus 86.9 1.1 2.4E-05 40.5 4.6 53 161-216 245-297 (737)
115 PF00404 Dockerin_1: Dockerin 86.7 1.2 2.7E-05 21.9 2.8 18 3-20 1-18 (21)
116 PF09069 EF-hand_3: EF-hand; 86.0 2.2 4.8E-05 29.6 4.9 65 76-142 2-74 (90)
117 KOG3866|consensus 85.4 1.8 3.9E-05 36.8 4.9 61 82-142 249-323 (442)
118 KOG0042|consensus 84.6 1.9 4.1E-05 39.7 5.1 63 79-144 595-658 (680)
119 KOG4578|consensus 81.8 2.1 4.5E-05 36.7 4.0 23 81-103 374-396 (421)
120 KOG4578|consensus 80.4 1.4 3.1E-05 37.7 2.5 63 78-142 334-397 (421)
121 PF08976 DUF1880: Domain of un 79.1 1.4 3.1E-05 31.8 1.8 32 180-211 3-34 (118)
122 PF05517 p25-alpha: p25-alpha 78.4 7.7 0.00017 29.7 5.9 58 82-142 7-68 (154)
123 KOG3555|consensus 75.9 5.6 0.00012 34.4 4.8 59 77-142 250-309 (434)
124 cd07313 terB_like_2 tellurium 75.7 7.8 0.00017 27.1 5.0 53 160-212 12-65 (104)
125 PF08726 EFhand_Ca_insen: Ca2+ 75.1 2.6 5.7E-05 27.6 2.1 56 77-139 6-65 (69)
126 PF05099 TerB: Tellurite resis 69.6 3.9 8.5E-05 30.3 2.3 48 91-141 37-87 (140)
127 PF00690 Cation_ATPase_N: Cati 69.1 15 0.00032 23.7 4.7 53 186-241 6-58 (69)
128 KOG3866|consensus 67.8 34 0.00073 29.4 7.5 32 187-221 299-330 (442)
129 cd07316 terB_like_DjlA N-termi 66.4 36 0.00078 23.6 6.7 54 160-213 12-65 (106)
130 PF12174 RST: RCD1-SRO-TAF4 (R 63.8 12 0.00027 24.5 3.5 33 181-213 22-54 (70)
131 KOG4347|consensus 63.6 6.6 0.00014 36.8 2.9 64 62-128 535-603 (671)
132 PRK09430 djlA Dna-J like membr 62.3 94 0.002 26.1 12.0 98 91-192 69-174 (267)
133 smart00288 VHS Domain present 62.3 7.5 0.00016 28.9 2.6 43 173-215 5-47 (133)
134 KOG4004|consensus 61.0 3.2 7E-05 33.0 0.4 56 54-113 196-254 (259)
135 cd07313 terB_like_2 tellurium 59.9 55 0.0012 22.6 9.4 48 91-141 13-63 (104)
136 KOG4070|consensus 59.4 15 0.00032 28.0 3.6 51 164-214 34-87 (180)
137 KOG1707|consensus 59.1 10 0.00022 35.3 3.2 63 77-143 315-377 (625)
138 cd03569 VHS_Hrs_Vps27p VHS dom 59.0 12 0.00026 28.2 3.2 47 169-215 5-51 (142)
139 PF08414 NADPH_Ox: Respiratory 58.9 25 0.00054 24.8 4.4 59 78-142 31-91 (100)
140 KOG2243|consensus 56.7 88 0.0019 32.9 9.1 52 160-213 4070-4121(5019)
141 PF08461 HTH_12: Ribonuclease 56.7 34 0.00074 22.0 4.6 41 156-197 6-46 (66)
142 PF05099 TerB: Tellurite resis 55.3 18 0.0004 26.6 3.7 96 6-115 36-136 (140)
143 cd03568 VHS_STAM VHS domain fa 53.5 12 0.00026 28.3 2.4 64 174-241 6-69 (144)
144 PF05042 Caleosin: Caleosin re 52.1 32 0.0007 26.9 4.5 34 180-213 92-125 (174)
145 KOG4004|consensus 49.0 10 0.00022 30.3 1.4 46 160-209 201-247 (259)
146 KOG1954|consensus 48.8 24 0.00052 31.3 3.7 45 161-208 457-501 (532)
147 PF14178 YppF: YppF-like prote 48.7 68 0.0015 20.3 4.9 45 96-142 3-47 (60)
148 KOG0998|consensus 48.2 9 0.00019 37.7 1.2 64 75-142 281-344 (847)
149 PF12295 Symplekin_C: Sympleki 47.6 1.4E+02 0.003 23.6 13.5 71 160-239 86-158 (183)
150 KOG4347|consensus 47.1 27 0.00058 33.0 3.9 34 181-214 552-585 (671)
151 PF01325 Fe_dep_repress: Iron 47.0 25 0.00054 22.2 2.8 48 76-134 7-54 (60)
152 PLN02222 phosphoinositide phos 44.7 89 0.0019 29.5 7.0 13 130-142 38-50 (581)
153 PF12174 RST: RCD1-SRO-TAF4 (R 41.6 85 0.0018 20.6 4.7 50 59-108 6-56 (70)
154 cd00086 homeodomain Homeodomai 41.6 78 0.0017 19.0 5.6 42 75-122 11-52 (59)
155 PF09068 EF-hand_2: EF hand; 40.9 24 0.00051 26.1 2.2 27 79-105 99-125 (127)
156 KOG0042|consensus 40.5 58 0.0013 30.5 5.0 54 160-214 606-659 (680)
157 KOG2871|consensus 39.9 30 0.00064 30.5 2.9 31 76-106 308-338 (449)
158 COG4103 Uncharacterized protei 39.8 90 0.0019 23.6 5.1 69 160-235 41-110 (148)
159 PLN02223 phosphoinositide phos 39.3 1.5E+02 0.0033 27.7 7.5 66 76-142 15-91 (537)
160 KOG0039|consensus 39.2 39 0.00085 32.3 3.9 80 59-141 2-87 (646)
161 PF04558 tRNA_synt_1c_R1: Glut 39.1 36 0.00077 26.4 3.0 44 148-193 85-129 (164)
162 COG4103 Uncharacterized protei 39.0 1.7E+02 0.0037 22.1 9.3 56 81-141 34-92 (148)
163 PLN02228 Phosphoinositide phos 38.8 1.4E+02 0.003 28.2 7.2 29 109-142 21-49 (567)
164 PRK09430 djlA Dna-J like membr 37.4 1.2E+02 0.0027 25.4 6.3 73 129-205 69-150 (267)
165 cd03561 VHS VHS domain family; 37.1 29 0.00063 25.6 2.2 40 178-217 10-49 (133)
166 KOG0035|consensus 36.8 26 0.00057 34.4 2.3 88 2-101 756-848 (890)
167 PLN02222 phosphoinositide phos 36.8 1.5E+02 0.0032 28.0 7.2 63 76-142 24-89 (581)
168 PF10668 Phage_terminase: Phag 35.9 1.2E+02 0.0025 19.3 4.6 35 148-188 7-41 (60)
169 PF10437 Lip_prot_lig_C: Bacte 35.5 35 0.00076 23.0 2.3 41 170-210 45-86 (86)
170 PF09373 PMBR: Pseudomurein-bi 35.4 40 0.00087 18.4 2.1 18 197-214 1-18 (33)
171 PF03979 Sigma70_r1_1: Sigma-7 34.1 63 0.0014 21.7 3.3 30 162-194 20-49 (82)
172 PF07308 DUF1456: Protein of u 32.6 1.4E+02 0.0031 19.4 6.3 46 164-210 14-59 (68)
173 PLN02230 phosphoinositide phos 32.3 2.1E+02 0.0046 27.2 7.4 15 198-212 88-102 (598)
174 PF11116 DUF2624: Protein of u 31.6 1.7E+02 0.0037 20.0 6.8 11 131-141 14-24 (85)
175 PLN02228 Phosphoinositide phos 30.5 2E+02 0.0044 27.1 7.0 64 77-142 24-91 (567)
176 PLN02230 phosphoinositide phos 29.0 2.8E+02 0.0061 26.3 7.7 66 76-142 28-101 (598)
177 cd07311 terB_like_1 tellurium 29.0 2.6E+02 0.0056 21.2 9.7 95 91-192 37-133 (150)
178 PF04876 Tenui_NCP: Tenuivirus 28.9 2.7E+02 0.0057 21.3 7.3 13 60-72 98-110 (175)
179 PF15187 Augurin: Oesophageal 28.9 66 0.0014 22.7 2.7 32 203-235 28-59 (114)
180 PF09069 EF-hand_3: EF-hand; 28.8 2E+02 0.0043 19.9 8.2 30 182-213 47-76 (90)
181 KOG0039|consensus 28.4 1E+02 0.0022 29.5 4.9 61 152-212 22-89 (646)
182 KOG1265|consensus 28.4 6.3E+02 0.014 25.5 11.2 122 87-212 158-299 (1189)
183 PF12419 DUF3670: SNF2 Helicas 28.1 1.3E+02 0.0029 22.4 4.6 50 160-209 80-138 (141)
184 cd03565 VHS_Tom1 VHS domain fa 27.8 1.1E+02 0.0023 23.0 4.0 64 175-241 8-71 (141)
185 PLN02223 phosphoinositide phos 27.6 2.6E+02 0.0056 26.2 7.0 14 199-212 79-92 (537)
186 PF06226 DUF1007: Protein of u 27.5 52 0.0011 26.5 2.4 21 2-22 59-79 (212)
187 PF14513 DAG_kinase_N: Diacylg 27.1 2.2E+02 0.0047 21.4 5.4 15 92-106 47-61 (138)
188 COG1321 TroR Mn-dependent tran 26.7 1.2E+02 0.0026 23.2 4.1 53 76-139 9-61 (154)
189 cd03567 VHS_GGA VHS domain fam 26.4 2E+02 0.0044 21.5 5.3 65 173-241 6-70 (139)
190 PF00046 Homeobox: Homeobox do 25.9 1.6E+02 0.0034 17.7 5.1 40 75-120 11-50 (57)
191 COG2818 Tag 3-methyladenine DN 25.8 76 0.0017 25.1 2.9 63 75-138 53-117 (188)
192 PF10163 EnY2: Transcription f 25.6 1.1E+02 0.0023 20.8 3.3 39 196-234 47-85 (86)
193 PF14513 DAG_kinase_N: Diacylg 25.6 2.9E+02 0.0063 20.7 6.4 50 91-141 5-58 (138)
194 KOG1265|consensus 25.4 4.3E+02 0.0093 26.6 8.1 81 129-213 162-250 (1189)
195 PF07879 PHB_acc_N: PHB/PHA ac 25.1 58 0.0012 21.0 1.7 22 84-105 10-31 (64)
196 PF09966 DUF2200: Uncharacteri 25.1 1.2E+02 0.0027 21.7 3.5 35 95-139 24-58 (111)
197 PRK10353 3-methyl-adenine DNA 25.1 74 0.0016 25.3 2.7 63 75-138 52-116 (187)
198 PF11363 DUF3164: Protein of u 24.1 3.7E+02 0.0081 21.4 6.7 51 182-239 117-167 (195)
199 cd07176 terB tellurite resista 23.9 66 0.0014 22.3 2.1 15 129-143 16-30 (111)
200 TIGR00624 tag DNA-3-methyladen 23.8 97 0.0021 24.4 3.2 61 75-138 51-113 (179)
201 PF11020 DUF2610: Domain of un 23.7 1.3E+02 0.0027 20.3 3.2 39 172-210 37-75 (82)
202 KOG0998|consensus 23.5 66 0.0014 31.9 2.6 170 50-225 16-207 (847)
203 smart00549 TAFH TAF homology. 23.1 1.7E+02 0.0037 20.3 3.8 24 198-222 37-60 (92)
204 PF02761 Cbl_N2: CBL proto-onc 21.8 2.7E+02 0.0058 19.1 4.6 24 186-209 44-67 (85)
205 PF09012 FeoC: FeoC like trans 21.7 1.4E+02 0.003 19.1 3.1 29 91-123 12-40 (69)
206 PF05678 VQ: VQ motif; InterP 20.8 1E+02 0.0023 16.7 2.0 17 164-180 10-26 (31)
207 PF07531 TAFH: NHR1 homology t 20.4 1.8E+02 0.0038 20.4 3.6 32 197-232 37-68 (96)
208 TIGR02787 codY_Gpos GTP-sensin 20.4 3.8E+02 0.0083 22.3 6.0 20 52-71 127-147 (251)
209 smart00831 Cation_ATPase_N Cat 20.3 1.3E+02 0.0029 18.5 2.9 38 200-240 10-47 (64)
210 PF09328 Phytochelatin_C: Doma 20.1 69 0.0015 26.7 1.7 43 196-240 70-112 (264)
211 PF09851 SHOCT: Short C-termin 20.0 1.3E+02 0.0029 16.0 2.3 16 7-22 14-29 (31)
No 1
>KOG2643|consensus
Probab=100.00 E-value=2.4e-43 Score=298.52 Aligned_cols=242 Identities=57% Similarity=0.929 Sum_probs=225.0
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCcccc-ccCcceeeeccCCCCCCCcCHHHHHHHHHHHHHHHH
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYR-GVNSALTTYFFGENKDEKLTIEKFLDFQHQLQKEIL 79 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~~~~l 79 (243)
|||.||||.||.+||..+++....+...+..+++..+.+.+.. ++++.++.++|+++|+++|+++||++++..+|+|.+
T Consensus 241 MFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil 320 (489)
T KOG2643|consen 241 MFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQEEIL 320 (489)
T ss_pred eeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888777777777777766665555 567778899999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHccCcchHHHHHHHHhH
Q psy922 80 SLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHI 159 (243)
Q Consensus 80 ~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~ 159 (243)
+..|..+|+..+|.|+..+|+.+|..+.+++......+++++.+.++..+..||++||.+|+++++++.++..|+.+|..
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~ 400 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIALRFYHM 400 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999998877776677789999999887667889999999999999999999999999999
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhh
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDE 239 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 239 (243)
+++.|+..+|++++..++|.+||+..++.+|..||.|+||.||++||+.+|+++++||++.|+++|+.++|+.+|+|+++
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~gl~~~~~~v~kc~k~ 480 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRGLELPKDTGLLRYMKAVKKCIKE 480 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy922 240 VFS 242 (243)
Q Consensus 240 ~~~ 242 (243)
|.+
T Consensus 481 ~~~ 483 (489)
T KOG2643|consen 481 VSS 483 (489)
T ss_pred hhh
Confidence 865
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.86 E-value=8.3e-21 Score=144.57 Aligned_cols=133 Identities=17% Similarity=0.298 Sum_probs=111.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHcc----Ccch
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLN----NIND 149 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~~----~~~~ 149 (243)
+.+.|+++|..+|+|++|.|+..+|..+++.+ .+.+..++..++..++ .+.+.|+|.+|+.++.... .-++
T Consensus 18 qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d----~~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 18 QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEID----AGNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhcc----CCCCccCHHHHHHHHHHHhccCCcHHH
Confidence 45689999999999999999999999999975 3444444555544433 3568999999999986422 2457
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
+.+||++||. ++|+|+..+++++++.+ |..+++++|+.+++.+|.|+||.|+|+||++++..
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8999999997 67999999999999975 79999999999999999999999999999998754
No 3
>KOG0027|consensus
Probab=99.85 E-value=4.1e-20 Score=142.32 Aligned_cols=134 Identities=19% Similarity=0.289 Sum_probs=113.5
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHc----cC---
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFL----NN--- 146 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~----~~--- 146 (243)
+...++.+|+.||++++|+|+..||..+++.+ ...+..++..+++.++. +++|.|+++||+.++... ..
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~---dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDL---DGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC---CCCCeEcHHHHHHHHHhhhcccccccc
Confidence 34568899999999999999999999999987 34455567777777665 459999999999988532 11
Q ss_pred -cchHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 147 -INDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 147 -~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
.+.+..||++|+. ++|+|+..||+.++..+ |..+++++++.+++.+|.|+||.|+|+||+++|..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2378899999997 67999999999999987 68899999999999999999999999999999864
No 4
>KOG0027|consensus
Probab=99.81 E-value=5.5e-20 Score=141.63 Aligned_cols=123 Identities=20% Similarity=0.336 Sum_probs=101.8
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHHH-----
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQ----- 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~----- 75 (243)
+||+|++|.|+..||..+|+.+|.++ +.... ..++..+|.+|+|.|+|+||+.++....
T Consensus 16 ~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el---------------~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 16 LFDKDGDGKISVEELGAVLRSLGQNP-TEEEL---------------RDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHCCCCCCcccHHHHHHHHHHcCCCC-CHHHH---------------HHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 58999999999999999999999874 32221 2355678999999999999999987531
Q ss_pred ----HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 76 ----KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ----~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+.++.+|+.||+|++|+||+.||+.+|..+ ...+..++..+++.++. +.+|.|+|+||+.++.
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~---d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDV---DGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCC---CCCCeEeHHHHHHHHh
Confidence 3489999999999999999999999999987 45666677777777664 4599999999999874
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.81 E-value=8.8e-20 Score=138.97 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=100.7
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~ 75 (243)
+||.|++|.|+.+||..+|+++|.++|. .. ..-++..+|. |.+.|+|.+|+.+|... .
T Consensus 28 l~D~d~~G~I~~~el~~ilr~lg~~~s~-~e---------------i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRSLGFNPSE-AE---------------INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHHcCCCCcH-HH---------------HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 5899999999999999999999987532 11 1123445677 88999999999999754 4
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
.++++.+|+.||+|++|+|+..+|..+++.+ ..+++++++.+++.++. +++|.|+|++|++.+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~---d~dG~i~~~eF~~~~ 154 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDE---DGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCC---CCCceEeHHHHHHHH
Confidence 6899999999999999999999999999987 56788888888877664 459999999999976
No 6
>KOG0028|consensus
Probab=99.79 E-value=4e-18 Score=127.33 Aligned_cols=134 Identities=22% Similarity=0.321 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH----ccCcch
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHF----LNNIND 149 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~----~~~~~~ 149 (243)
+.+.++.+|..||++++|+|+++||+.+++.+ +..+..++..++..+++ .+.|.|+|++|+..+.. ....++
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk---~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK---EGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh---ccCceechHHHHHHHHHHHhccCcHHH
Confidence 55688999999999999999999999988886 34445567778887776 55899999999998752 234567
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
+..||++++. .+|.|+..+|+.+++.+ |++++++++.+++..+|.|+||.|+-+||.+.|+.
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 8899999886 67999999999999987 79999999999999999999999999999998875
No 7
>KOG0037|consensus
Probab=99.78 E-value=2.2e-18 Score=135.33 Aligned_cols=149 Identities=13% Similarity=0.229 Sum_probs=118.7
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHHHHHHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQKEILSL 81 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~~~~l~~ 81 (243)
.|+|++|.|+.+||+.+|...+-. .++...+.+|+.+||.+++|+|+|.||..+...++ .|+.
T Consensus 66 vD~d~sg~i~~~eLq~aLsn~~~~---------------~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~--~Wr~ 128 (221)
T KOG0037|consen 66 VDRDRSGRILAKELQQALSNGTWS---------------PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN--QWRN 128 (221)
T ss_pred hCccccccccHHHHHHHhhcCCCC---------------CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH--HHHH
Confidence 699999999999999987644322 13344678899999999999999999999998766 6999
Q ss_pred HHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHccCcchHHHHHHHHhH
Q psy922 82 EFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNNINDVDTALTFYHI 159 (243)
Q Consensus 82 ~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~ 159 (243)
+|+.||+|++|+|+..||+.+|..+ ..+++.-++-+++ +++.. +|.|.|++|+..+..+
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~----kyd~~~~g~i~FD~FI~ccv~L--------------- 189 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVR----KYDRFGGGRIDFDDFIQCCVVL--------------- 189 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHH----HhccccCCceeHHHHHHHHHHH---------------
Confidence 9999999999999999999999997 5677654444444 45544 8999999999987321
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCC--cCHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQ--LSNREFIAVM 210 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~--is~~EF~~~~ 210 (243)
+. +-.+|++.|++.+|. |+|++|+.+.
T Consensus 190 --------------~~----------lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 190 --------------QR----------LTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred --------------HH----------HHHHHHHhccccceeEEEeHHHHHHHh
Confidence 11 124799999999887 5899998764
No 8
>KOG0028|consensus
Probab=99.73 E-value=2e-17 Score=123.64 Aligned_cols=123 Identities=13% Similarity=0.236 Sum_probs=104.4
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~ 75 (243)
+||.+++|+|+.+||+.+|+++|+.++. .+ ..-+...+|++|.|.|+|++|...|... .
T Consensus 41 lfd~~~~g~iD~~EL~vAmralGFE~~k-~e---------------i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 41 LFDPDMAGKIDVEELKVAMRALGFEPKK-EE---------------ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred hhccCCCCcccHHHHHHHHHHcCCCcch-HH---------------HHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 5899999999999999999999997432 11 1123455788899999999999998653 4
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+.++.+|+.+|.|++|.||..+|+.+.+.+ .++++.++.+||+..+. .++|.|+-+||..++.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~---d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADR---DGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcc---cccccccHHHHHHHHh
Confidence 5789999999999999999999999999998 67888999999999876 5699999999998773
No 9
>PTZ00184 calmodulin; Provisional
Probab=99.73 E-value=9.4e-17 Score=122.59 Aligned_cols=134 Identities=19% Similarity=0.312 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHc-c---Ccch
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFL-N---NIND 149 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~-~---~~~~ 149 (243)
+.+.++..|..+|.+++|.|+..||..++..+ +.++. ...+..+...++.+ +|.|+|++|+.++... . ....
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 85 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPT--EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE 85 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCC--HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH
Confidence 34568889999999999999999999998765 33222 23444555555555 8999999999987532 2 1234
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
...+|+.|+. ++|.|+..+|..++..+ |..++..++..+|..+|.+++|.|+|+||+.++..
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 5677888876 56999999999999885 67899999999999999999999999999988753
No 10
>PTZ00183 centrin; Provisional
Probab=99.73 E-value=2.2e-16 Score=121.92 Aligned_cols=133 Identities=19% Similarity=0.267 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHc--c--Ccc
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFL--N--NIN 148 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~--~--~~~ 148 (243)
+.+.+..+|..+|.+++|+|+..||..++..+ ...+...+..++.. ++.+ +|.|+|+||+.++... . ...
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~----~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 90 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIAD----VDKDGSGKIDFEEFLDIMTKKLGERDPRE 90 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH----hCCCCCCcEeHHHHHHHHHHHhcCCCcHH
Confidence 34568889999999999999999999999875 22343334444444 4444 8999999999876431 1 123
Q ss_pred hHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 149 DVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 149 ~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
.+..+|+.|+. ++|.|+..||..++... |..+++.++..+|..+|.|++|.|+|+||+.+++.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 46678888886 56999999999999865 67899999999999999999999999999998875
No 11
>KOG0031|consensus
Probab=99.64 E-value=1.5e-14 Score=107.55 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhc-CCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH-HccCc--
Q psy922 72 HQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYA-GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH-FLNNI-- 147 (243)
Q Consensus 72 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~-~~~~~-- 147 (243)
.+.|.+.++++|...|.|++|.|..++|+..+.++. ..+.++++.|++. ..|-|+|.-|+.++. .++..
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E-------a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE-------APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCCCeeHHHHHHHHHHHhcCCCH
Confidence 334667899999999999999999999999999873 3455556666554 378999999999874 23333
Q ss_pred -chHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHH
Q psy922 148 -NDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211 (243)
Q Consensus 148 -~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~ 211 (243)
+.+..||+.||. +.|.|..+.+++++... |..+++++|+.+|+.+-.|..|.|+|.+|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 246789999987 66999999999999884 7899999999999999999999999999999986
No 12
>PTZ00183 centrin; Provisional
Probab=99.64 E-value=1.8e-15 Score=116.80 Aligned_cols=123 Identities=15% Similarity=0.280 Sum_probs=97.2
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~ 75 (243)
++|.|++|.|+..||..+++.+|..++. . ....+...+|.+++|.|+|+||..++... .
T Consensus 25 ~~D~~~~G~i~~~e~~~~l~~~g~~~~~-~---------------~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 25 LFDTDGSGTIDPKELKVAMRSLGFEPKK-E---------------EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred HhCCCCCCcccHHHHHHHHHHhCCCCCH-H---------------HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 3799999999999999999998864221 0 11234566899999999999999987643 2
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+.++.+|+.+|.+++|+|+..||..++... .++++.++..++..++. +++|.|+|++|+.++.
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADR---NGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCcCcHHHHHHHHh
Confidence 4678899999999999999999999999875 35677667777766543 3489999999998874
No 13
>PTZ00184 calmodulin; Provisional
Probab=99.62 E-value=3.2e-15 Score=114.08 Aligned_cols=122 Identities=15% Similarity=0.290 Sum_probs=95.0
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~ 75 (243)
.+|.|++|.|+..||..++..++.+++. . ....+...+|.+++|.|+|++|..++... .
T Consensus 19 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~-~---------------~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 19 LFDKDGDGTITTKELGTVMRSLGQNPTE-A---------------ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred HHcCCCCCcCCHHHHHHHHHHhCCCCCH-H---------------HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 3799999999999999999888764321 0 11235567899999999999999987643 3
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
.+.+..+|+.+|.+++|+|+..||..++... ..++..++..++..++. .++|.|+|+||+.++
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV---DGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCC---CCCCcCcHHHHHHHH
Confidence 4578899999999999999999999999875 34555556666555443 348999999999876
No 14
>KOG0034|consensus
Probab=99.61 E-value=2.1e-14 Score=113.06 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhcCCC-CCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCC-cCHHHHHHHHHHccC---c-c
Q psy922 75 QKEILSLEFIRKGPN-DDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNN---I-N 148 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d-~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~-I~~~EF~~~~~~~~~---~-~ 148 (243)
+-+.|...|..+|.+ ++|+|+.+||..+.....+ + -..++++.++. ..+|. |+|++|+..++.... . .
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N--p-~~~rI~~~f~~---~~~~~~v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN--P-LADRIIDRFDT---DGNGDPVDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC--c-HHHHHHHHHhc---cCCCCccCHHHHHHHHhhhcCCccHHH
Confidence 335677889999999 9999999999998843222 2 12345555544 23555 999999998864221 2 3
Q ss_pred hHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCC--HH----HHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 149 DVDTALTFYHI-AGASIDRITLKHVARTVAHVELS--DH----VIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 149 ~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls--~~----~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+..||++||. .+|.|+++|+..++..+.|...+ ++ .++.+|.++|.|+||+||++||.+++.+.
T Consensus 105 Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 67789999997 67999999999999988776566 43 37888999999999999999999998765
No 15
>KOG0034|consensus
Probab=99.59 E-value=2.1e-14 Score=113.07 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=97.7
Q ss_pred CcCC-CCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCC-cCHHHHHHHHHHH-----
Q psy922 2 FDLN-GDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEK-LTIEKFLDFQHQL----- 74 (243)
Q Consensus 2 fD~d-~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~f~eF~~~~~~~----- 74 (243)
+|.+ ++|.|+.+||..++ .+..+ |.. .-++..|+++++|. |+|++|++.+...
T Consensus 42 l~~~~~~g~lt~eef~~i~-~~~~N-p~~------------------~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 42 LDRNNGDGYLTKEEFLSIP-ELALN-PLA------------------DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred hccccccCccCHHHHHHHH-HHhcC-cHH------------------HHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 4677 89999999999988 33333 221 22456788888888 9999999998643
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhc--CCC--hhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYA--GYP--PKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~--~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
+.++++.+|+.||.+++|+|+.+|+..++..+. +.+ .+.+..+++++...+|.+ ||.|+|+||..++.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456899999999999999999999999999873 344 456778888888888877 99999999999874
No 16
>KOG0030|consensus
Probab=99.52 E-value=1.5e-13 Score=100.61 Aligned_cols=131 Identities=19% Similarity=0.337 Sum_probs=101.7
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhccc---CCCCcCHHHHHHHHHHcc------C
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKE---NKLGISKEDYLKFFHFLN------N 146 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~---~~g~I~~~EF~~~~~~~~------~ 146 (243)
.+.++.+|..||..++|+|+..+...+|+.+ |.+|++. ...+.+.+ ... +-.+|+|++|+-++..+. .
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~a-eV~k~l~~-~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNA-EVLKVLGQ-PKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHH-HHHHHHcC-cccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 3678999999999999999999999999986 5555532 22222222 222 136899999999875321 2
Q ss_pred cchHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHH
Q psy922 147 INDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211 (243)
Q Consensus 147 ~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~ 211 (243)
.+++-..++.||+ ++|.|...||++++..+ |..+++++++.+.+-. .|.+|.|.|+.|++.+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 3566777888987 67999999999999986 7899999999998764 47899999999998763
No 17
>KOG0030|consensus
Probab=99.48 E-value=1.3e-13 Score=100.91 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=91.6
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCC--CCCCcCHHHHHHHHHHHH---
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGEN--KDEKLTIEKFLDFQHQLQ--- 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~f~eF~~~~~~~~--- 75 (243)
+||..|||+|+......+|+++|.+| +..... -....+..+ +-..|+|++|+.++..+.
T Consensus 19 lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~---------------k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 19 LFDRTGDGKISGSQVGDVLRALGQNP-TNAEVL---------------KVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred HHhccCcccccHHHHHHHHHHhcCCC-cHHHHH---------------HHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 48999999999999999999999985 322110 011112222 347899999999987763
Q ss_pred ----HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q psy922 76 ----KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKF 140 (243)
Q Consensus 76 ----~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~ 140 (243)
.+..-+-.++||++++|+|...||+++|..+ ..++.++++.++.... +.+|.|+|+.|+.-
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e----D~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE----DSNGCINYEAFVKH 148 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc----ccCCcCcHHHHHHH
Confidence 2456678899999999999999999999988 5688888877765532 23799999999874
No 18
>KOG0044|consensus
Probab=99.48 E-value=9e-13 Score=104.00 Aligned_cols=137 Identities=19% Similarity=0.320 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhcCCCC-CCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHcc--Cc-ch
Q psy922 75 QKEILSLEFIRKGPND-DGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFLN--NI-ND 149 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~-~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~--~~-~~ 149 (243)
.+..++..++-|=.+. +|.++.++|+.++..... ......+.+.++..+|.+ +|.|+|.||+..++... .+ +.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp--~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eek 101 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFP--DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEK 101 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCC--CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHH
Confidence 3455666666665554 899999999999988733 233467788888888877 99999999998876432 23 35
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHh---cCC------CCC-HHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTV---AHV------ELS-DHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~---~g~------~ls-~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+.++|++||. ++|+|++.|+-++++.+ .|. ..+ ...++.+|+.+|.|+||.|+++||+...+..
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 7789999997 67999999999888754 232 222 3458999999999999999999999887664
No 19
>KOG0037|consensus
Probab=99.46 E-value=1.2e-12 Score=103.18 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=104.8
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh--cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHccCcchHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY--AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALT 155 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~~~~~~~~~a~~ 155 (243)
.+...|...|+|++|.|+.+||..+|... .+++.+.+.-|+.-++. ++.|+|.+.||.++.. .+...+..|+
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~---~~~G~i~f~EF~~Lw~---~i~~Wr~vF~ 131 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR---DNSGTIGFKEFKALWK---YINQWRNVFR 131 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC---CCCCccCHHHHHHHHH---HHHHHHHHHH
Confidence 35678999999999999999999998743 45666666666655443 4499999999999764 3445566677
Q ss_pred HHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 156 FYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 156 ~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
-||. ..|.|+..||+.++..+ |..||++.++.+++++|.-++|.|.+++|+..+-.
T Consensus 132 ~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 132 TYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred hcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 7776 56999999999999986 89999999999999999999999999999986544
No 20
>KOG4223|consensus
Probab=99.45 E-value=6.5e-13 Score=110.34 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=124.8
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH------
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL------ 74 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~------ 74 (243)
++|.+++|.|+..|++.-+.......-. . ...-.....|.+.+|.|+|+|+...+...
T Consensus 85 ~iD~~~Dgfv~~~El~~wi~~s~k~~v~-~---------------~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~ 148 (325)
T KOG4223|consen 85 KIDSDSDGFVTESELKAWIMQSQKKYVV-E---------------EAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDE 148 (325)
T ss_pred hhcCCCCCceeHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHhccCccceeeHHHhhhhhhhcccCccc
Confidence 3689999999999999887654322100 0 00011234688999999999998866421
Q ss_pred ----------HH--HHHHHHHhhcCCCCCCCcCHHHHHHHHHHh--cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q psy922 75 ----------QK--EILSLEFIRKGPNDDGNITEGDFTELLLAY--AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKF 140 (243)
Q Consensus 75 ----------~~--~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~ 140 (243)
+. ..-++.|+.-|.|++|.++.+||...|.-- ..+.+--+...+..+++ +++|.|+++||+.=
T Consensus 149 ~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dk---n~DG~I~~eEfigd 225 (325)
T KOG4223|consen 149 FPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDK---NGDGKISLEEFIGD 225 (325)
T ss_pred cccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhccc---CCCCceeHHHHHhH
Confidence 00 123568999999999999999998776321 01111112333333333 33999999999984
Q ss_pred H-HHcc-------CcchHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHH
Q psy922 141 F-HFLN-------NINDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIA 208 (243)
Q Consensus 141 ~-~~~~-------~~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~ 208 (243)
+ +... .+.+..+.+..++. .+|+++.+|++..+.. .+......++..++...|.|+||+||++|.+.
T Consensus 226 ~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P-~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 226 LYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILP-SEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCC-CCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 4 2221 12223333444454 6799999999976643 23455678899999999999999999999875
No 21
>KOG0031|consensus
Probab=99.45 E-value=7.4e-13 Score=98.58 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=95.0
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~ 75 (243)
++|.|+||.|+.++|+..+.+||..+ +...+ ..|+ ...+|.|+|.-|+.++.+. .
T Consensus 40 ~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~el---------------DaM~----~Ea~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 40 LMDQNRDGFIDKEDLRDMLASLGKIA-SDEEL---------------DAMM----KEAPGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhccCCCcccHHHHHHHHHHcCCCC-CHHHH---------------HHHH----HhCCCCeeHHHHHHHHHHHhcCCCH
Confidence 57999999999999999999999763 21111 0111 3467899999999998653 5
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
++.+..+|+.||.+++|.|..+.|+.+|... ..+++++++.+++..-. +..|.|+|.+|+..+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~---d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI---DKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc---ccCCceeHHHHHHHH
Confidence 7889999999999999999999999999987 56888888888876442 238999999998875
No 22
>KOG0044|consensus
Probab=99.44 E-value=6.3e-13 Score=104.88 Aligned_cols=123 Identities=18% Similarity=0.272 Sum_probs=95.7
Q ss_pred CCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH----HHHHHH
Q psy922 5 NGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL----QKEILS 80 (243)
Q Consensus 5 d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~----~~~~l~ 80 (243)
-.+|.++.++|+.+++.+... +.. ..-...++..||.|++|.|+|.||+..+..+ .+++++
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~---gd~------------~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPD---GDA------------SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCC---CCH------------HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 358999999999999988632 111 0113456778999999999999999887654 467899
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHh---cCC---C--hhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAY---AGY---P--PKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~---~~~---~--~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
.+|++||.|++|+|+..|+-.++... .+- + +...++....+.+.+|.+ ||.||++||+..+.
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 99999999999999999999998875 221 1 223566777777778777 99999999999763
No 23
>KOG0036|consensus
Probab=99.39 E-value=1.8e-12 Score=110.70 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=100.8
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHHHHHHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQKEILSL 81 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~~~~l~~ 81 (243)
||.+++|.||.+++.+.+.+++.+.|.... ..-+...+|.|.+|.++|+||.+++.. .+..+..
T Consensus 23 lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~---------------~~~l~~~~d~~~dg~vDy~eF~~Y~~~-~E~~l~~ 86 (463)
T KOG0036|consen 23 LDSKNDGQVDLDQLEKGLEKLDHPKPNYEA---------------AKMLFSAMDANRDGRVDYSEFKRYLDN-KELELYR 86 (463)
T ss_pred hccCCCCceeHHHHHHHHHhcCCCCCchHH---------------HHHHHHhcccCcCCcccHHHHHHHHHH-hHHHHHH
Confidence 799999999999999999999875221110 012345679999999999999999876 4456888
Q ss_pred HHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 82 EFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 82 ~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.|+..|.++||.|+.+|+...++.+ .+++.++.+.+++.+++ ++++.|+++||..++.
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~---~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDK---DGKATIDLEEWRDHLL 145 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhcc---CCCeeeccHHHHhhhh
Confidence 9999999999999999999999987 56777888888888877 6689999999999874
No 24
>KOG0036|consensus
Probab=99.28 E-value=7.2e-11 Score=100.97 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHccCcchHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNNINDVDTA 153 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a 153 (243)
+.+++..|+.+|.+++|.++..++.+.+..+ ...++ .++...+....|.+ +|.++|+||.+++... -..+...
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~---~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~--E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPN---YEAAKMLFSAMDANRDGRVDYSEFKRYLDNK--ELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCc---hHHHHHHHHhcccCcCCcccHHHHHHHHHHh--HHHHHHH
Confidence 3468899999999999999999999999886 22122 23444455555666 9999999999998421 1123333
Q ss_pred HHHHh-HhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 154 LTFYH-IAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 154 ~~~~~-~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
|+-.| ..||.|+..|+.+.++.+ |.++++++++.+|+..|.||++.|.++||...+.-
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 33334 367999999999999986 78999999999999999999999999999886644
No 25
>KOG0751|consensus
Probab=99.23 E-value=8.3e-11 Score=102.51 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=143.8
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHHHHHHHH
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQKEILS 80 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~~~~l~ 80 (243)
+||+.++|.++.+++..++........ +....+++.+...|+.+....++|.||.++++..+.|.-+
T Consensus 116 lFDr~~~~~vs~~~~~~if~~t~l~~~-------------~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 116 LFDRLGNGEVSFEDVADIFGQTNLHHH-------------IPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred HhcccCCCceehHHHHHHHhccccccC-------------CCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHH
Confidence 489999999999999998876643311 1123456677788888888899999999999999999899
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHccCcchHHHHHHHHh
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNNINDVDTALTFYH 158 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~ 158 (243)
++|+..|+.++|+||.-+++.++... ..+.+..++..+-.+.. .+ ..++||..|..+.+++++++-++....-+.
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vag---g~~~H~vSf~yf~afnslL~~melirk~y~s~~ 259 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAG---GNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLA 259 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcC---CCCccccchHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 99999999999999999999998765 33333334443333322 33 568999999999887777665554333221
Q ss_pred H--hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCCCcCHHHHHHHHH
Q psy922 159 I--AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDEN-QDGQLSNREFIAVMK 211 (243)
Q Consensus 159 ~--~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d-~DG~is~~EF~~~~~ 211 (243)
. .+-.++.+++..+.+... ..++-+++.+|...|.. .-|.|+++++.+..-
T Consensus 260 ~~~~d~~~~kdq~~~~a~~~~--q~t~~~idilf~la~~~~~~~~ltl~Di~~I~p 313 (694)
T KOG0751|consen 260 GTRKDVEVTKDQFSLAAQTSK--QVTPLEIDILFQLADLYHPMGRLTLADIERIAP 313 (694)
T ss_pred ccccchhhhHHHHHHHHHHhh--ccCchhhhhhhhhhhcccccccccHHHHHhhCC
Confidence 1 223688999988877653 67888999999999876 468899999977543
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.18 E-value=5.4e-11 Score=78.28 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~ 141 (243)
+|+.+|+.+|+|++|+|+.+||..++..+ ...++..+...+..+...+|.+ +|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999986 2334666777877777778777 9999999999875
No 27
>KOG4223|consensus
Probab=99.16 E-value=2.7e-10 Score=94.89 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=105.1
Q ss_pred ccCCCCCCCcCHHHHHHHHHH----HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhc-CCChhhHHHHHHHHHHhccc
Q psy922 53 FFGENKDEKLTIEKFLDFQHQ----LQKEILSLEFIRKGPNDDGNITEGDFTELLLAYA-GYPPKKKSRIIKHVKKTFKE 127 (243)
Q Consensus 53 ~~d~~~~g~i~f~eF~~~~~~----~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~d~ 127 (243)
-++.++...+.-.+|...... -.++++..++..+|.+++|+|+..|+..++.... ..-..+..+-|.. .+.
T Consensus 49 ~~~~dhe~~~~d~e~~~~fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~----~d~ 124 (325)
T KOG4223|consen 49 NFQYDHEAFLGDDEFADEFDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDE----YDK 124 (325)
T ss_pred CcCccccccccchhhhhhhhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHH----hcc
Confidence 345555555554455444433 3567899999999999999999999999987641 1111122222222 334
Q ss_pred C-CCCcCHHHHHHHHHHcc-------Cc---chH----HHHHHHHhH----hcCCcCHHHHHHHHHHhcCCCCCHHHHHH
Q psy922 128 N-KLGISKEDYLKFFHFLN-------NI---NDV----DTALTFYHI----AGASIDRITLKHVARTVAHVELSDHVIDV 188 (243)
Q Consensus 128 ~-~g~I~~~EF~~~~~~~~-------~~---~~~----~~a~~~~~~----~~g~i~~~e~~~~~~~~~g~~ls~~~i~~ 188 (243)
+ +|.|+|+|+...+.... .. ... .+-...|.. ++|.++++||..++..--...+.+-.|.+
T Consensus 125 ~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~E 204 (325)
T KOG4223|consen 125 NKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAE 204 (325)
T ss_pred CccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHH
Confidence 4 99999999988654211 00 011 111122332 56899999999998765445666777889
Q ss_pred HHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 189 VFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 189 if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+...|+||||.|+++||+.-|-..
T Consensus 205 tl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 205 TLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHhhcccCCCCceeHHHHHhHHhhc
Confidence 9999999999999999999977665
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.14 E-value=1.4e-10 Score=80.70 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=58.9
Q ss_pred cchHHHHHHHHhH--hcCCcCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 147 INDVDTALTFYHI--AGASIDRITLKHVARTVAHVELSD-HVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 147 ~~~~~~a~~~~~~--~~g~i~~~e~~~~~~~~~g~~ls~-~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+..+..+|+.|+. ++|+|+..||+.+++...|..+++ .+++.+++.+|.|+||.|+|+||+.+|....
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456788999987 679999999999999833666888 8999999999999999999999999988753
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.14 E-value=1.4e-10 Score=73.20 Aligned_cols=52 Identities=31% Similarity=0.524 Sum_probs=47.4
Q ss_pred cCCcCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 161 GASIDRITLKHVARTVAHVE-LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 161 ~g~i~~~e~~~~~~~~~g~~-ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+|.|+.++|+.+++. .|.. +++++++.+|..+|.|+||+|+|+||+.++..+
T Consensus 2 ~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 2 DGKITREEFRRALSK-LGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSEEEHHHHHHHHHH-TTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHH-hCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHhC
Confidence 688999999999955 4788 999999999999999999999999999998764
No 30
>KOG0038|consensus
Probab=99.03 E-value=1e-09 Score=81.26 Aligned_cols=95 Identities=24% Similarity=0.390 Sum_probs=75.9
Q ss_pred HHHHHhcccC-CCCcCHHHHHHHHHHccCcc----hHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHH----HH
Q psy922 119 KHVKKTFKEN-KLGISKEDYLKFFHFLNNIN----DVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVI----DV 188 (243)
Q Consensus 119 ~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~----~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i----~~ 188 (243)
+++...+..+ .|.+||++|+.+++..+... ....||++|+- +++.|+..++...+..++..+||++++ +.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 3444444454 89999999999987655433 23467888885 678999999999999998889999874 56
Q ss_pred HHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 189 VFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 189 if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
++.++|.||||+||+.||..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 7889999999999999999988654
No 31
>PLN02964 phosphatidylserine decarboxylase
Probab=99.03 E-value=3.9e-09 Score=97.31 Aligned_cols=100 Identities=12% Similarity=0.163 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcC-CChhhH-HHHHHHHHHhcccC-CCCcCHHHHHHHHHHccCcchHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAG-YPPKKK-SRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNNINDVD 151 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~-~~~~~~-~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~~~~ 151 (243)
+.+.++++|..+|+|++|+| +..+++.+ + ..+++. ..+++++...+|.+ +|.|+|+||+.++..
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-------- 207 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-------- 207 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH--------
Confidence 45678999999999999997 77777775 4 233332 23566666666665 899999999887631
Q ss_pred HHHHHHhHhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 152 TALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 152 ~a~~~~~~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
.+...+++++..+|+.+|.|+||.|+++||..+|..
T Consensus 208 -------------------------lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 208 -------------------------FGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred -------------------------hccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 123457778999999999999999999999999887
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.97 E-value=2.9e-09 Score=74.10 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=58.1
Q ss_pred cchHHHHHHHHh-H-hcC-CcCHHHHHHHHHH----hcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 147 INDVDTALTFYH-I-AGA-SIDRITLKHVART----VAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 147 ~~~~~~a~~~~~-~-~~g-~i~~~e~~~~~~~----~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+..+..||+.|+ . ++| .|+..||+.+++. ..|...++.+++.+++.+|.|+||.|+|+||+.++....
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 446778899997 3 678 5999999999987 346778999999999999999999999999999887653
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.95 E-value=2.5e-09 Score=74.43 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCC-CCCCCcCHHHHHHHHHH-hc-CCCh-hhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKGP-NDDGNITEGDFTELLLA-YA-GYPP-KKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D~-d~~G~Is~~el~~~l~~-~~-~~~~-~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
..+..+|+.||+ +++|+|+..||+.++.. +. .++. .+++.+++.++. +++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~---d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDV---NQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCC---CCCCCCcHHHHHHHHH
Confidence 357889999999 99999999999999998 52 3555 667777777664 4499999999999763
No 34
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.94 E-value=2.1e-09 Score=70.62 Aligned_cols=60 Identities=27% Similarity=0.495 Sum_probs=46.0
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCH----HHHHHHHHHHccCCCCCcCHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTVAHVELSD----HVIDVVFCIFDENQDGQLSNREFIAVM 210 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~----~~i~~if~~~D~d~DG~is~~EF~~~~ 210 (243)
+..+|+.||. .+|.|+..||..+++.+ +...++ +.++.+|+.+|+|+||.|+++||+.+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4566777775 56888888888888775 333333 456677999999999999999999875
No 35
>KOG2643|consensus
Probab=98.94 E-value=1.2e-08 Score=88.09 Aligned_cols=154 Identities=14% Similarity=0.248 Sum_probs=105.3
Q ss_pred ccCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-----cCC------Chh-----hH
Q psy922 53 FFGENKDEKLTIEKFLDFQHQL--QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-----AGY------PPK-----KK 114 (243)
Q Consensus 53 ~~d~~~~g~i~f~eF~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-----~~~------~~~-----~~ 114 (243)
+++.+.+|-|+|+||+-++.-+ .+...+-+|++||.||||.|+.+||..+..-. .++ ++. ++
T Consensus 207 F~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EEEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 4567788999999999887754 44567789999999999999999999876432 121 111 01
Q ss_pred -HHHHHHHHHhcccC-CCCcCHHHHHHHHHHccCcchHHHHHHHHhHhc-CCcCHHHHHHHHHHhcCCCCCHH--HHHHH
Q psy922 115 -SRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNNINDVDTALTFYHIAG-ASIDRITLKHVARTVAHVELSDH--VIDVV 189 (243)
Q Consensus 115 -~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~~~-g~i~~~e~~~~~~~~~g~~ls~~--~i~~i 189 (243)
..+...++ ..+ +++++++||..|+..++. +-+..-|.-|+..+ |.|+..+|.+++-..++.+.... ....+
T Consensus 287 nsaL~~yFF---G~rg~~kLs~deF~~F~e~Lq~-Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrv 362 (489)
T KOG2643|consen 287 NSALLTYFF---GKRGNGKLSIDEFLKFQENLQE-EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRV 362 (489)
T ss_pred hhhHHHHhh---ccCCCccccHHHHHHHHHHHHH-HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHH
Confidence 12222222 244 899999999999863321 12334455566655 89999999999877665443332 46677
Q ss_pred HHHHccCCCCCcCHHHHHHHHH
Q psy922 190 FCIFDENQDGQLSNREFIAVMK 211 (243)
Q Consensus 190 f~~~D~d~DG~is~~EF~~~~~ 211 (243)
=++++.+ +-.||++||....+
T Consensus 363 k~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 363 KEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHhccCC-CCCcCHHHHHHHHH
Confidence 7888877 55689988876544
No 36
>KOG0038|consensus
Probab=98.90 E-value=1.2e-08 Score=75.60 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=76.4
Q ss_pred eccCCCCCCCcCHHHHHHHHHHHH-----HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh--cCCChhhHHHHHHHHHHh
Q psy922 52 YFFGENKDEKLTIEKFLDFQHQLQ-----KEILSLEFIRKGPNDDGNITEGDFTELLLAY--AGYPPKKKSRIIKHVKKT 124 (243)
Q Consensus 52 ~~~d~~~~g~i~f~eF~~~~~~~~-----~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~~~~~~~~~~~~~~ 124 (243)
..|..||.|.++|+.|+.++.-.. .-+...+|+.||-|++++|...+|...+.++ .+++++++..+.+++...
T Consensus 78 e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieE 157 (189)
T KOG0038|consen 78 EVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEE 157 (189)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 357889999999999999875432 2245679999999999999999999999987 578888888888888887
Q ss_pred cccC-CCCcCHHHHHHHH
Q psy922 125 FKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 125 ~d~~-~g~I~~~EF~~~~ 141 (243)
+|.+ +|++++.||-.+.
T Consensus 158 AD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 158 ADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hcCCCCCcccHHHHHHHH
Confidence 7766 9999999998865
No 37
>KOG0377|consensus
Probab=98.89 E-value=2e-08 Score=86.87 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=96.9
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh--cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHc-----------
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY--AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFL----------- 144 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~----------- 144 (243)
.|..+|+.+|++++|+|+......++... .|+|..-+.. .+.. ..++|.|.|.+........
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~---kla~--~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP---KLAN--GSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh---hccC--CCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 57789999999999999999999999887 4666432211 1111 1237899998887754311
Q ss_pred ----cCcchHHHHHHHHhH-hcCCcCHHHHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 145 ----NNINDVDTALTFYHI-AGASIDRITLKHVARTV---AHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 145 ----~~~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~---~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+-..+...|++.|. ..|.|+.+||+.+.+.+ +...+++.++..+-+..|.|+||.|++.||+.+.+-.
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 111234445555565 56999999999987654 3458899999999999999999999999999988764
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.86 E-value=1.5e-08 Score=71.33 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=54.0
Q ss_pred cchHHHHHHHHhH--hcC-CcCHHHHHHHHHHhc----CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 147 INDVDTALTFYHI--AGA-SIDRITLKHVARTVA----HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 147 ~~~~~~a~~~~~~--~~g-~i~~~e~~~~~~~~~----g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+..+..+|..|+. ++| .|+..||+.+++... +...++.+++.+++.+|.|+||.|+|+||+.+|....
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3456677888884 556 499999999987632 2234778999999999999999999999999997753
No 39
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.84 E-value=1.2e-08 Score=70.95 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHhhcC-CCCCC-CcCHHHHHHHHHH-----h-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKG-PNDDG-NITEGDFTELLLA-----Y-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-----~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.++.+|+.|| +|++| +|+..||+.+|.. + ...++.+++.+++.++. +++|.|+|+||+.++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~---n~dG~v~f~eF~~li~ 78 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS---DGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCC---CCCCcCcHHHHHHHHH
Confidence 5788999998 89999 5999999999998 4 23455667888887764 4489999999998763
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.83 E-value=4.3e-09 Score=97.04 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCcCCCCCccCHHHHHHHHHHHHc-ccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH----H
Q psy922 1 MFDLNGDGDVDSDEFEKVATLIRQ-QTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL----Q 75 (243)
Q Consensus 1 ~fD~d~~G~I~~~E~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~----~ 75 (243)
+||.|++|.| +..+++++|. . |++... .....++..+|.+++|.|+|+||..++..+ .
T Consensus 151 lfD~dgdG~i----Lg~ilrslG~~~-pte~e~------------~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~s 213 (644)
T PLN02964 151 LLDPSSSNKV----VGSIFVSCSIED-PVETER------------SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVA 213 (644)
T ss_pred HHCCCCCCcC----HHHHHHHhCCCC-CCHHHH------------HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCC
Confidence 5899999997 9999999994 4 332110 001234566899999999999999998764 3
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
++.++.+|+.||+|++|+|+.+||..++..
T Consensus 214 eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 214 ANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 567999999999999999999999999987
No 41
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.82 E-value=2.5e-08 Score=69.38 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=52.4
Q ss_pred HHHHHHHHhH--h-cCCcCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 150 VDTALTFYHI--A-GASIDRITLKHVARTV--AHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 150 ~~~a~~~~~~--~-~g~i~~~e~~~~~~~~--~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+-..|..|+. + +|+|+..||+++++.. .|..+++++++.+|+.+|.|+||.|+|+||+.+|..-
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3344555554 3 5699999999999742 4788999999999999999999999999999988765
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.79 E-value=2.6e-08 Score=70.27 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=55.6
Q ss_pred chHHHHHHHHhH-h--cCCcCHHHHHHHHHHh----cCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 148 NDVDTALTFYHI-A--GASIDRITLKHVARTV----AHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 148 ~~~~~a~~~~~~-~--~g~i~~~e~~~~~~~~----~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
..+..+|..|+. . +|.|+..|++.+++.. .|..++..+++.+++.+|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456788888875 3 4899999999998752 2456788999999999999999999999999988764
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.78 E-value=3.1e-08 Score=70.15 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
+.+.++.+|+.+|++++|.|+.+|++.++.. .+++..++..++..++. .++|.|+|+||+.++.
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~~~~~ev~~i~~~~d~---~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLK-SGLPQTLLAKIWNLADI---DNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-cCCCHHHHHHHHHHhcC---CCCCCcCHHHHHHHHH
Confidence 4457889999999999999999999999987 47777777777766553 3489999999999874
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.78 E-value=3.7e-08 Score=68.58 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=55.7
Q ss_pred cchHHHHHHHHhH---hcCCcCHHHHHHHHHHhcCCC----CCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 147 INDVDTALTFYHI---AGASIDRITLKHVARTVAHVE----LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 147 ~~~~~~a~~~~~~---~~g~i~~~e~~~~~~~~~g~~----ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+..+..+|..|+. ++|.|+..+|..+++...|.. .+..+++.++..+|.|++|.|+|+||+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3456778888887 568999999999987633433 3588999999999999999999999999888764
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.75 E-value=3e-08 Score=69.78 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=48.1
Q ss_pred HHHHHHhhcC-CCCCC-CcCHHHHHHHHHHh-c-----CCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKG-PNDDG-NITEGDFTELLLAY-A-----GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D-~d~~G-~Is~~el~~~l~~~-~-----~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+..+|..|| +|++| +||..||+.++... . ..++.+++++++.++. +++|.|+|+||+.++.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~---n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS---NKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC---CCCCCCCHHHHHHHHH
Confidence 5778999999 78998 59999999999762 1 1234457777777664 4499999999999874
No 46
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.75 E-value=4.3e-08 Score=64.25 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=48.5
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 80 SLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 80 ~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
+.+|+.+|++++|.|+.+|+..++... +++..++..+++.++. +++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~i~~~~d~---~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-GLPRSVLAQIWDLADT---DKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCHHHHHHHHHHhcC---CCCCcCCHHHHHHHHH
Confidence 568999999999999999999999875 6776666777666554 4489999999999774
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.74 E-value=1.1e-08 Score=55.69 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=25.9
Q ss_pred HHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 185 VIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 185 ~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
+++.+|+.+|+|+||+||++||+.+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999999875
No 48
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.73 E-value=4.2e-08 Score=68.94 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=55.9
Q ss_pred cchHHHHHHHHh-H-hcC-CcCHHHHHHHHHHhcC----CCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 147 INDVDTALTFYH-I-AGA-SIDRITLKHVARTVAH----VELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 147 ~~~~~~a~~~~~-~-~~g-~i~~~e~~~~~~~~~g----~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
++.+..+|+.|+ . ++| .|+..||+.+++...| ...++.+++.+|+.+|.|++|.|+|+||+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 355778899996 5 668 4999999999975223 245888999999999999999999999999888753
No 49
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.69 E-value=8.6e-08 Score=67.33 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHhhcC-CCCCCC-cCHHHHHHHHHH-h---c--CCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKG-PNDDGN-ITEGDFTELLLA-Y---A--GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D-~d~~G~-Is~~el~~~l~~-~---~--~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
+.++++|+.|| ++++|+ |+..||+.++.. + . ..++.+++.+++.++. +++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~---d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE---NGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC---CCCCcCcHHHHHHHHH
Confidence 56889999997 999995 999999999975 3 1 1244556666666554 3489999999999764
No 50
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.67 E-value=1.9e-07 Score=66.11 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=60.2
Q ss_pred hHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH--HhcCCCCCCCcc
Q psy922 149 DVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR--LLRGLEKPKDTG 225 (243)
Q Consensus 149 ~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~--~~~~~~~~~~~~ 225 (243)
.+..+|..|+. .+|.|+..|++++++.. +++..+++.+|..+|.+++|.|+++||+.++... ...|..-|....
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~~ 87 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASLP 87 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccCC
Confidence 45667777775 67899999999988763 4788999999999999999999999999988774 345777776655
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.67 E-value=8.6e-08 Score=67.62 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCC-CC-CCCcCHHHHHHHHHHh------cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKGP-ND-DGNITEGDFTELLLAY------AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D~-d~-~G~Is~~el~~~l~~~------~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
..++.+|..||. |+ +|+|+..||+.++... .+.+..++..+++.++. +++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~---~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ---NRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC---CCCCcCcHHHHHHHHH
Confidence 458889999997 97 7999999999999752 13355556666666554 3489999999998774
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.66 E-value=1.2e-07 Score=66.04 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=48.9
Q ss_pred hHHHHHHHHh-H-hcC-CcCHHHHHHHHHHhc----CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 149 DVDTALTFYH-I-AGA-SIDRITLKHVARTVA----HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 149 ~~~~a~~~~~-~-~~g-~i~~~e~~~~~~~~~----g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
.+..+|+.|. . ++| .|+..||+.+++... +...++.+++.+++.+|.|+||.|+|+||+.+|....
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3445555533 3 223 688888888876541 3356788999999999999999999999999887753
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.64 E-value=1.4e-07 Score=65.75 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=46.1
Q ss_pred cCCcCHHHHHHHHHHhcCCCCC----HHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 161 GASIDRITLKHVARTVAHVELS----DHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 161 ~g~i~~~e~~~~~~~~~g~~ls----~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+|.|+..||+.++....|..++ +.+++.+|+.+|.|+||.|+|+||+.+|....
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4689999999998754455566 89999999999999999999999999888653
No 54
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.56 E-value=3.4e-07 Score=59.93 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 152 TALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 152 ~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+|+.++. .+|.|+..|+..++... | +++.+++.+|+.+|.+++|.|+|+||+.++..-
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 45666665 56899999999998774 3 588899999999999999999999999988654
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.56 E-value=3.2e-07 Score=63.82 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcCC--CCCCCcCHHHHHHHHHHhcC--C----ChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGP--NDDGNITEGDFTELLLAYAG--Y----PPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 75 ~~~~l~~~F~~~D~--d~~G~Is~~el~~~l~~~~~--~----~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
+.+.++.+|..||+ +++|.|+..+|..++....+ + +..++..++..++. +++|.|+|++|+.++.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~---~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV---NKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc---CCCCcCcHHHHHHHHH
Confidence 34568899999999 89999999999999976312 2 24455555555443 3389999999999874
No 56
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.54 E-value=2.9e-07 Score=63.98 Aligned_cols=62 Identities=10% Similarity=0.330 Sum_probs=49.5
Q ss_pred HHHHHHhhcCC-CC-CCCcCHHHHHHHHHH---h-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGP-ND-DGNITEGDFTELLLA---Y-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D~-d~-~G~Is~~el~~~l~~---~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+-..|..||. +| +|+|+..||+.++.. + ..+++.++.++++.++. +++|.|+|+||+.++.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~---d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR---NKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CCCCCCcHHHHHHHHH
Confidence 46678999998 77 899999999999974 2 23566778888877764 4589999999998763
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.46 E-value=1e-06 Score=64.36 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHH
Q psy922 74 LQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 74 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~ 141 (243)
.....+..+|..+|.|++|+|+.+||..+. + .... ..+..+...+|.+ +|.||++||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~~~e----~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-DPNE----HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-cchH----HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678899999999999999999999875 2 2222 3334444445555 9999999999977
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.46 E-value=6.4e-07 Score=62.42 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=47.3
Q ss_pred HHHHHHHhh-cCCCCCC-CcCHHHHHHHHHHhc------CCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 77 EILSLEFIR-KGPNDDG-NITEGDFTELLLAYA------GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~-~D~d~~G-~Is~~el~~~l~~~~------~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
..|..+|+. +|++|+| +|+..||+.++.... ...+.+++.+++.++. +++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~---d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL---NSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC---CCCCcCcHHHHHHHHH
Confidence 457889999 7888876 999999999998741 2234456666665543 3499999999998763
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.44 E-value=1.3e-06 Score=55.46 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=48.9
Q ss_pred HHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHH
Q psy922 151 DTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210 (243)
Q Consensus 151 ~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~ 210 (243)
..+|..++. .+|.|+..++..++... +.+.+...+..+|..+|.+++|.|+++||+.++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 345566664 56889999998888875 577888999999999999999999999998765
No 60
>KOG0751|consensus
Probab=98.41 E-value=2.3e-06 Score=75.34 Aligned_cols=153 Identities=15% Similarity=0.211 Sum_probs=99.4
Q ss_pred eeeccCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-c-C-CChhhHHHHHHHHHHh
Q psy922 50 TTYFFGENKDEKLTIEKFLDFQHQL--QKEILSLEFIRKGPNDDGNITEGDFTELLLAY-A-G-YPPKKKSRIIKHVKKT 124 (243)
Q Consensus 50 ~~~~~d~~~~g~i~f~eF~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~-~-~~~~~~~~~~~~~~~~ 124 (243)
+....|..++|-|+|+||..+-..+ .......+|..||+.++|.+|.++++.++... . + .+-.--.+.++..+.
T Consensus 79 la~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg- 157 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG- 157 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh-
Confidence 3344577789999999999875433 34456789999999999999999999998864 1 1 110001234444443
Q ss_pred cccC-CCCcCHHHHHHHHHHccCcchHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHH-HHHccCCCCCc
Q psy922 125 FKEN-KLGISKEDYLKFFHFLNNINDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVF-CIFDENQDGQL 201 (243)
Q Consensus 125 ~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if-~~~D~d~DG~i 201 (243)
+. ...++|.||..+++-. ..+.-.+||+..+. .+|.|+.-+|+.++-.+.+.-+++ .|+..+ ....-+..-++
T Consensus 158 --~~~~r~~ny~~f~Q~lh~~-~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~-~v~~nlv~vagg~~~H~v 233 (694)
T KOG0751|consen 158 --DIRKRHLNYAEFTQFLHEF-QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTP-FVEENLVSVAGGNDSHQV 233 (694)
T ss_pred --hHHHHhccHHHHHHHHHHH-HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCH-HHhhhhhhhcCCCCcccc
Confidence 33 5679999999987521 23345677776665 679999999999886654433444 454444 33333333346
Q ss_pred CHHHHH
Q psy922 202 SNREFI 207 (243)
Q Consensus 202 s~~EF~ 207 (243)
|+..|.
T Consensus 234 Sf~yf~ 239 (694)
T KOG0751|consen 234 SFSYFN 239 (694)
T ss_pred chHHHH
Confidence 665553
No 61
>KOG0041|consensus
Probab=98.40 E-value=1.7e-06 Score=67.65 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhh--HHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 64 IEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKK--KSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 64 f~eF~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~--~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
|.+|..+ ...+.+.+...|+.||.+.+|+|+..||+.+|.++ |.|+++ +..+|..|+. +.+|+|||.||+-++
T Consensus 87 yteF~eF-srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mikeVde---d~dgklSfreflLIf 161 (244)
T KOG0041|consen 87 YTEFSEF-SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMIKEVDE---DFDGKLSFREFLLIF 161 (244)
T ss_pred hhhhhHH-HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHHHHhhc---ccccchhHHHHHHHH
Confidence 5555533 23355677889999999999999999999999885 667665 4677777775 449999999998877
Q ss_pred H
Q psy922 142 H 142 (243)
Q Consensus 142 ~ 142 (243)
+
T Consensus 162 r 162 (244)
T KOG0041|consen 162 R 162 (244)
T ss_pred H
Confidence 5
No 62
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.38 E-value=1.7e-06 Score=54.90 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=43.4
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~ 141 (243)
+..+|+.+|.+++|.|+..|+..++..+ ...+...+..+ ...++.+ +|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999876 23333334444 4444444 8899999998764
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.36 E-value=1.3e-06 Score=56.54 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-CCcCHHHHHHHHHHH
Q psy922 152 TALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQD-GQLSNREFIAVMKNR 213 (243)
Q Consensus 152 ~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~D-G~is~~EF~~~~~~~ 213 (243)
.+|.+||. ..|.+...++..+++.+++...++.+++.+.+.+|.+|. |.|+++.|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 35777776 569999999999999998768889999999999999987 999999999999875
No 64
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.34 E-value=1.9e-06 Score=62.91 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=48.3
Q ss_pred chHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHH
Q psy922 148 NDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211 (243)
Q Consensus 148 ~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~ 211 (243)
..+..+|..+|. ++|.|+..|+..+. + ......+..+|..+|.|+||.||++||...+.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 356778888875 67999999999875 1 23456789999999999999999999999883
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.33 E-value=3.6e-06 Score=58.36 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCcCHHHHHHHHHHh----cCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 162 ASIDRITLKHVARTV----AHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 162 g~i~~~e~~~~~~~~----~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+.+++.||+..++.- .+..-++..|+.+|+.+|.|+||.|+|.||+.++..-
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456666666665432 1234578889999999999999999999999988764
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.31 E-value=5.5e-07 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
++.+|+.||+|++|+|+.+||..++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 678999999999999999999998875
No 67
>KOG4251|consensus
Probab=98.30 E-value=1.9e-06 Score=69.54 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=82.3
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHH---HHHhcccC-CCCcCHHHHHHHHHHcc-Cc-ch
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKH---VKKTFKEN-KLGISKEDYLKFFHFLN-NI-ND 149 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~---~~~~~d~~-~g~I~~~EF~~~~~~~~-~~-~~ 149 (243)
.+.+..+|+..|.+.+|+||..|+++++.... .+.+++-.+. .+...|.+ +|.|+|+||.--+.... +. .+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImekt---aEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKT---AEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHH---HHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 45788999999999999999999999987531 1112211111 12223445 99999999976442111 10 01
Q ss_pred HHHHHH------------HHh----HhcC---------CcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHH
Q psy922 150 VDTALT------------FYH----IAGA---------SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNR 204 (243)
Q Consensus 150 ~~~a~~------------~~~----~~~g---------~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~ 204 (243)
...|.+ .+. .-.+ -++..||..++..-...+.-...|..|...+|.|||-.+|..
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvp 256 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVP 256 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecch
Confidence 111111 010 0112 345688877765432223344568899999999999999999
Q ss_pred HHHHHHHH
Q psy922 205 EFIAVMKN 212 (243)
Q Consensus 205 EF~~~~~~ 212 (243)
||+...-.
T Consensus 257 eFislpvG 264 (362)
T KOG4251|consen 257 EFISLPVG 264 (362)
T ss_pred hhhcCCCc
Confidence 99875433
No 68
>KOG4251|consensus
Probab=98.29 E-value=5.4e-06 Score=66.94 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=116.8
Q ss_pred CcCCCCCccCHHHHHHHHHH-HHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH------
Q psy922 2 FDLNGDGDVDSDEFEKVATL-IRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL------ 74 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~------ 74 (243)
.|.|-||+|+..|+++-+.. ..-.... . ..++..-+...|+||+|.|+++||..-+...
T Consensus 110 vDVNtDrkisAkEmqrwImektaEHfqe------------a--meeSkthFraVDpdgDGhvsWdEykvkFlaskghsek 175 (362)
T KOG4251|consen 110 VDVNTDRKISAKEMQRWIMEKTAEHFQE------------A--MEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEK 175 (362)
T ss_pred cccCccccccHHHHHHHHHHHHHHHHHH------------H--HhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchH
Confidence 48899999999999886532 2111000 0 1122334566799999999999997643211
Q ss_pred ------------HHHHHHHHHhhcCCCCCCCcCH---------HHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCc
Q psy922 75 ------------QKEILSLEFIRKGPNDDGNITE---------GDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGI 132 (243)
Q Consensus 75 ------------~~~~l~~~F~~~D~d~~G~Is~---------~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I 132 (243)
.-+.=.+.|..-+++..|..+. .||-..|.- .++..-+..+++.+-..+|.+ +..+
T Consensus 176 evadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHP--EhSrgmLrfmVkeivrdlDqdgDkql 253 (362)
T KOG4251|consen 176 EVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHP--EHSRGMLRFMVKEIVRDLDQDGDKQL 253 (362)
T ss_pred HHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcCh--HhhhhhHHHHHHHHHHHhccCCCeee
Confidence 0011234465566666666654 555544321 223333455566666656655 8899
Q ss_pred CHHHHHHHHH--H----ccCcchH-----HHHHH-HHh-HhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCC
Q psy922 133 SKEDYLKFFH--F----LNNINDV-----DTALT-FYH-IAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDG 199 (243)
Q Consensus 133 ~~~EF~~~~~--~----~~~~~~~-----~~a~~-~~~-~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG 199 (243)
|-.||+..-. . -+++++. ..-|. +.+ +.+|.++..|+..++... ...+.-.++..++...|.|+|.
T Consensus 254 SvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~-n~~~alne~~~~ma~~d~n~~~ 332 (362)
T KOG4251|consen 254 SVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ-NFRLALNEVNDIMALTDANNDE 332 (362)
T ss_pred cchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch-hhhhhHHHHHHHHhhhccCCCc
Confidence 9999998531 1 1122221 11121 223 357999999999986543 3445567788899999999999
Q ss_pred CcCHHHHHH
Q psy922 200 QLSNREFIA 208 (243)
Q Consensus 200 ~is~~EF~~ 208 (243)
.++.+|.+.
T Consensus 333 ~Ls~eell~ 341 (362)
T KOG4251|consen 333 KLSLEELLE 341 (362)
T ss_pred ccCHHHHHH
Confidence 999999864
No 69
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.27 E-value=1.9e-06 Score=54.06 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=37.3
Q ss_pred CCCCcCHHHHHHHHHHh-cC-CChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 90 DDGNITEGDFTELLLAY-AG-YPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 90 ~~G~Is~~el~~~l~~~-~~-~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+|.|+.++|+.++..+ .+ +++.++..++..++. +++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~---~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDT---DGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTT---SSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhccc---CCCCCCCHHHHHHHHH
Confidence 36899999999999554 34 666666666666664 4489999999988763
No 70
>KOG0377|consensus
Probab=98.24 E-value=8.8e-06 Score=70.82 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=81.4
Q ss_pred CcCCCCCccCHHHHHHHHHH-HHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH------
Q psy922 2 FDLNGDGDVDSDEFEKVATL-IRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL------ 74 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~------ 74 (243)
+|.+++|+|+......+|+. +|++.|= ... ...+...+.+|.+.|.+-+..+..-
T Consensus 473 ~D~~ksG~lsis~Wa~~mE~i~~L~LPW-r~L-----------------~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea 534 (631)
T KOG0377|consen 473 YDPKKSGKLSISHWAKCMENITGLNLPW-RLL-----------------RPKLANGSDDGKVEYKSTLDNLDTEVILEEA 534 (631)
T ss_pred cChhhcCeeeHHHHHHHHHHHhcCCCcH-HHh-----------------hhhccCCCcCcceehHhHHHHhhhhhHHHHH
Confidence 68999999999999999964 5665431 000 1122334566788888877655310
Q ss_pred ----------HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh---c--CCChhhHHHHHHHHHHhcccC-CCCcCHHHHH
Q psy922 75 ----------QKEILSLEFIRKGPNDDGNITEGDFTELLLAY---A--GYPPKKKSRIIKHVKKTFKEN-KLGISKEDYL 138 (243)
Q Consensus 75 ----------~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~--~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~ 138 (243)
.+..|..+|+.+|.|++|.||.+||+.+.+-+ . .++.+++.+ +...+|-+ ||.|+++||+
T Consensus 535 ~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~----la~~mD~NkDG~IDlNEfL 610 (631)
T KOG0377|consen 535 GSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE----LARSMDLNKDGKIDLNEFL 610 (631)
T ss_pred HhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH----HHHhhccCCCCcccHHHHH
Confidence 12346789999999999999999999887654 1 234433433 44444555 9999999999
Q ss_pred HHHHH
Q psy922 139 KFFHF 143 (243)
Q Consensus 139 ~~~~~ 143 (243)
..+++
T Consensus 611 eAFrl 615 (631)
T KOG0377|consen 611 EAFRL 615 (631)
T ss_pred HHHhh
Confidence 87753
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.22 E-value=1.3e-06 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.4
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHHH
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAVM 210 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~~ 210 (243)
++.+|+.+|.|+||.||++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999864
No 72
>KOG0040|consensus
Probab=98.17 E-value=2.2e-05 Score=76.92 Aligned_cols=125 Identities=14% Similarity=0.238 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCCh---hhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHc--cC---c
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPP---KKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFL--NN---I 147 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~---~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~--~~---~ 147 (243)
.+..+|++||++.+|.++..+|+.+|+++ .++|. .+-++-++.+....|++ +|.|+..+|++||... .+ .
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~ 2333 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSS 2333 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccch
Confidence 45679999999999999999999999986 33322 12233455555555677 9999999999998532 12 2
Q ss_pred chHHHHHHHHhHhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--------CCcCHHHHHHHH
Q psy922 148 NDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQD--------GQLSNREFIAVM 210 (243)
Q Consensus 148 ~~~~~a~~~~~~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~D--------G~is~~EF~~~~ 210 (243)
+.+..||+..+.+..+++.+++.. .+|+++++-.+..+-.-.+ +.|.|.+|++.+
T Consensus 2334 ~eIE~AfraL~a~~~yvtke~~~~--------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2334 EEIEDAFRALDAGKPYVTKEELYQ--------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred HHHHHHHHHhhcCCccccHHHHHh--------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 357788887777667888888753 4677776666555433222 347888887643
No 73
>PF14658 EF-hand_9: EF-hand domain
Probab=98.13 E-value=7.4e-06 Score=53.04 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHhhcCCCCCCCcCHHHHHHHHHHhcC--CChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 82 EFIRKGPNDDGNITEGDFTELLLAYAG--YPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 82 ~F~~~D~d~~G~Is~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
+|..||+++.|.|...++...|+.+.+ .++.+++.+.+.++. .+ +|.|+++.|+..|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP---~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDP---EGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCC---CCCCceEeHHHHHHHHH
Confidence 699999999999999999999998733 333445555555544 34 59999999999875
No 74
>KOG4666|consensus
Probab=98.10 E-value=5.6e-06 Score=69.35 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=75.2
Q ss_pred eeeccCCCCCCCcCHHHHHHHHHH-----HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q psy922 50 TTYFFGENKDEKLTIEKFLDFQHQ-----LQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKT 124 (243)
Q Consensus 50 ~~~~~d~~~~g~i~f~eF~~~~~~-----~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 124 (243)
++.+||.+++|.++|-|...-+.- ...+.++.+|+.|+.+.+|.+...+|..+++...|+..-.+--++..+.+
T Consensus 264 ~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q- 342 (412)
T KOG4666|consen 264 TFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQ- 342 (412)
T ss_pred hhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhc-
Confidence 556899999999999998876542 24678999999999999999999999999887667765555667777776
Q ss_pred cccCCCCcCHHHHHHHHHH
Q psy922 125 FKENKLGISKEDYLKFFHF 143 (243)
Q Consensus 125 ~d~~~g~I~~~EF~~~~~~ 143 (243)
.++++|+|++|.+|+..
T Consensus 343 --~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 343 --KDDPKIYASNFRKFAAT 359 (412)
T ss_pred --ccCcceeHHHHHHHHHh
Confidence 66899999999999853
No 75
>KOG0040|consensus
Probab=98.09 E-value=1.7e-05 Score=77.67 Aligned_cols=123 Identities=11% Similarity=0.219 Sum_probs=93.1
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH------H
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL------Q 75 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~------~ 75 (243)
||.+.+|.++..+|+..|+++|...|........ +++. .+....|++.+|.|+..+|.++|-.. .
T Consensus 2262 FDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~----p~fe-----~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2262 FDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPE----PEFE-----EILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred hchhhccCCcHHHHHHHHHhcCCCCcccccCCCC----hhHH-----HHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 8999999999999999999999987765432111 1121 23456799999999999999998542 2
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-----CCCcCHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-----KLGISKEDYLKF 140 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-----~g~I~~~EF~~~ 140 (243)
.+.+..+|+.+|. +.-+|+..++.. ++|+.+.+-.+.++...++.. .+.+.|.+|..-
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~~------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~s 2395 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQ------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNS 2395 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHHh------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHH
Confidence 3578899999999 888999998864 567777777777777765542 356788888763
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.03 E-value=4.3e-06 Score=46.16 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLL 104 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~ 104 (243)
+++.+|+.||+|++|+|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 477899999999999999999999987
No 77
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.01 E-value=2.1e-05 Score=54.67 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCC--CCCCcCHHHHHHHHHHhc--CCC----hhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGPN--DDGNITEGDFTELLLAYA--GYP----PKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~--~~~----~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+...|..|+.. .+|+|+..||+.++.... .++ +.+++.+++.++. +++|.|+|+||+.++.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~---d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDT---NQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCC---CCCCcCcHHHHHHHHH
Confidence 466789999966 489999999999997431 233 4455666555543 3489999999999764
No 78
>KOG2562|consensus
Probab=97.95 E-value=2.3e-05 Score=68.68 Aligned_cols=116 Identities=14% Similarity=0.210 Sum_probs=75.5
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccC-------CCCCCCcCHHHHHHHHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFG-------ENKDEKLTIEKFLDFQHQL 74 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~g~i~f~eF~~~~~~~ 74 (243)
+|+|.||.|+.++|...=..... ..++.+.|. ...+|+++|++|+-++-.+
T Consensus 287 LD~Dhd~lidk~~L~ry~d~tlt----------------------~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGDHTLT----------------------ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hccccccccCHHHHHHHhccchh----------------------hHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 69999999999999764211110 011112222 3467889999999988654
Q ss_pred ----HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh----cCCChh--hHHHHHHHHHHhccc-CCCCcCHHHHHH
Q psy922 75 ----QKEILSLEFIRKGPNDDGNITEGDFTELLLAY----AGYPPK--KKSRIIKHVKKTFKE-NKLGISKEDYLK 139 (243)
Q Consensus 75 ----~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~~~~--~~~~~~~~~~~~~d~-~~g~I~~~EF~~ 139 (243)
...-+...|+.+|.+++|.|+..|++...... ..+.++ -.+..+.++.....+ +.++|+..+|+.
T Consensus 345 e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 345 EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 23468889999999999999999998765432 111111 133344444433333 478999999987
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.88 E-value=1.5e-05 Score=43.96 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=24.0
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
+..+|+.+|.|+||.|+.+||..+++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 568999999999999999999999984
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=1.5e-05 Score=41.62 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELL 103 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l 103 (243)
|+.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568999999999999999998753
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.81 E-value=6e-05 Score=46.09 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 164 i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
++..|++.+++.+ +..+++..+..+|+.+|++++|.|.-+||....+.
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 5678888888886 67899999999999999999999999999988764
No 82
>KOG0041|consensus
Probab=97.74 E-value=0.00011 Score=57.63 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 134 KEDYLKFFHFLNNINDVDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 134 ~~EF~~~~~~~~~~~~~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
|.+|..|. ...+.+....|+.||. -+|+|+..||+.+|..+ |.+=|.--+..+++..|.|.||+||+.||+-+.+.
T Consensus 87 yteF~eFs--rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 87 YTEFSEFS--RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hhhhhHHH--HHHHHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 45555433 2345566677777776 57999999999999886 44555555889999999999999999999998888
Q ss_pred HHh
Q psy922 213 RLL 215 (243)
Q Consensus 213 ~~~ 215 (243)
...
T Consensus 164 aaa 166 (244)
T KOG0041|consen 164 AAA 166 (244)
T ss_pred Hhc
Confidence 754
No 83
>KOG2562|consensus
Probab=97.64 E-value=0.0012 Score=58.29 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=106.5
Q ss_pred ceeeeccCCCCCCCcCHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCC-------hhh---
Q psy922 48 ALTTYFFGENKDEKLTIEKFLDFQHQ---LQKEILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYP-------PKK--- 113 (243)
Q Consensus 48 ~~~~~~~d~~~~g~i~f~eF~~~~~~---~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~-------~~~--- 113 (243)
..++..++++..|.|+-..|..+... +....+.+.+..++..+.|+|...+|+..|..+ ..++ ++.
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~ 221 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQER 221 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHH
Confidence 34556678899999999999998753 345677788999999999999999999998876 2232 222
Q ss_pred -HHHHHHHHHHhcccC-CCCcCHHHHHHHHH-----HccCcchH---------HHHHHHH------h-HhcCCcCHHHHH
Q psy922 114 -KSRIIKHVKKTFKEN-KLGISKEDYLKFFH-----FLNNINDV---------DTALTFY------H-IAGASIDRITLK 170 (243)
Q Consensus 114 -~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~-----~~~~~~~~---------~~a~~~~------~-~~~g~i~~~e~~ 170 (243)
+...+.+++-.++.. .|+|+..+-.+-.- .+..-++. ..+..+| | ..+|.|+.+++.
T Consensus 222 Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ 301 (493)
T KOG2562|consen 222 YAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLK 301 (493)
T ss_pred HHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 223334444434444 89999988776321 11111111 1122222 1 136788888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHH----HHccCCCCCcCHHHHHHHHHHHH
Q psy922 171 HVARTVAHVELSDHVIDVVFC----IFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 171 ~~~~~~~g~~ls~~~i~~if~----~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
++.. ..++...|+.||. .+-.-.+|+++|++|+..+-...
T Consensus 302 ry~d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 302 RYGD----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HHhc----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 7753 2466777888888 45566788888888888776653
No 84
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.58 E-value=0.00012 Score=52.37 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=42.7
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+|.|+-.+.+.++.. -+|+.+.+..|+...|.|+||+|+.+||+-+|+--
T Consensus 22 ~~g~isg~~a~~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 22 QDGKISGDQAREFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp STTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4577888888877765 36899999999999999999999999999988753
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.33 E-value=0.00053 Score=60.49 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=41.9
Q ss_pred HHHHHHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 150 VDTALTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 150 ~~~a~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
+..+|++||. ++|.|+..||.. ++.+|..+|.|+||.|+++||..+++...
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4567777775 679999999831 46789999999999999999999988754
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.33 E-value=0.00085 Score=48.01 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHF 143 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~ 143 (243)
.+.+..+|...|. ++|.|+..+.+.++.. .+++.+.+.++|.-.+. +++|.++++||+-.+.+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-S~L~~~~L~~IW~LaD~---~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK-SGLPRDVLAQIWNLADI---DNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH-TTSSHHHHHHHHHHH-S---SSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-cCCCHHHHHHHHhhhcC---CCCCcCCHHHHHHHHHH
Confidence 4567789999986 5799999999998877 58888878888876554 45999999999987753
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.26 E-value=0.002 Score=44.74 Aligned_cols=61 Identities=11% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cC-----CChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY-AG-----YPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~-----~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+-.+|..|- .++|+++..||+.++.+- .+ -.+..++.+++.++. ++||.|+|.||+.+..
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~---n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD---CRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC---CCCCcCcHHHHHHHHH
Confidence 4556888887 346799999999999753 11 123335555555543 3399999999999763
No 88
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.23 E-value=0.00042 Score=36.20 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=24.4
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
+..+|..+|.+++|.|++.||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567999999999999999999998864
No 89
>KOG0169|consensus
Probab=97.20 E-value=0.0082 Score=56.15 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHccCcchHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAY-AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTF 156 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~~~~~~~~~a~~~ 156 (243)
-+...|+..|++++|.++..+...++..+ ..+....+..++++.+. ..++++..++|..+......-+++...|.-
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~---~~~~k~~~~~~~~~~~~~~~rpev~~~f~~ 213 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDN---SQTGKLEEEEFVKFRKELTKRPEVYFLFVQ 213 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHh---hccceehHHHHHHHHHhhccCchHHHHHHH
Confidence 45678999999999999999999998876 34444444455555532 348999999999987544433456665554
Q ss_pred HhHhcCCcCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHccC----CCCCcCHHHHHHHHHHH
Q psy922 157 YHIAGASIDRITLKHVARTVAHV-ELSDHVIDVVFCIFDEN----QDGQLSNREFIAVMKNR 213 (243)
Q Consensus 157 ~~~~~g~i~~~e~~~~~~~~~g~-~ls~~~i~~if~~~D~d----~DG~is~~EF~~~~~~~ 213 (243)
+..+.+.++..+|.+++....|. ..+.+.++.|++.+-.. ..+.++.+.|...|...
T Consensus 214 ~s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 214 YSHGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HhCCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 44457889999999999887654 56777888888877543 45669999999888665
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.05 E-value=0.00075 Score=59.55 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHF 143 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~ 143 (243)
+..++.+|+.+|.|++|+|+.+||.. .+.++..++. +++|.|+++||..++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~---d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDL---NHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCC---CCCCCCcHHHHHHHHHH
Confidence 45678899999999999999999842 1345555544 44899999999997753
No 91
>KOG4065|consensus
Probab=96.75 E-value=0.0039 Score=44.72 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHh-----cCC------ChhhHHHHHHHHHHhcccC-CCCcCHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAY-----AGY------PPKKKSRIIKHVKKTFKEN-KLGISKEDYLK 139 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~-----~~~------~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~ 139 (243)
..|+++|.|++|+|+--|+.+++... .|. +..+++.+++.+-.-.|-| +|.|+|.||.+
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 47999999999999999999998754 122 2235667777766644445 89999999976
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.60 E-value=0.003 Score=32.72 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
++.+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999888754
No 93
>KOG4666|consensus
Probab=96.57 E-value=0.0045 Score=52.34 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=84.8
Q ss_pred CCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHHccC----cchHHHHHHHHhH-hcCC
Q psy922 90 DDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHFLNN----INDVDTALTFYHI-AGAS 163 (243)
Q Consensus 90 ~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~~~~----~~~~~~a~~~~~~-~~g~ 163 (243)
+.+.|-..||..-++ ++.. ..+..++.++|.+ +|.++|.|...-.+++.+ ..-++.||+.|+. .+|.
T Consensus 240 kg~~igi~efa~~l~----vpvs---d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~ 312 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLR----VPVS---DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGI 312 (412)
T ss_pred cCCCcceeEeeeeee----cchh---hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccc
Confidence 456677777764432 2222 3445566667777 999999999887665432 3457889999986 6899
Q ss_pred cCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 164 i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
++..+|.-+++...| +..-.+-.+|...+...||+|+|++|.+.+...
T Consensus 313 ~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 313 SGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 999999999998765 344446679999999999999999999977653
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.50 E-value=0.0058 Score=37.43 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=28.3
Q ss_pred cCHHHHHHHHHHH----HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 62 LTIEKFLDFQHQL----QKEILSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 62 i~f~eF~~~~~~~----~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
++|.|-..+++.+ ..+....+|+.+|++++|++..+||....+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 5667766666543 3445566777788877888877777766554
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.12 E-value=0.012 Score=40.05 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHhHhcCCcCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHccC----CCCCcCHHHHHHHHHHH
Q psy922 152 TALTFYHIAGASIDRITLKHVARTVAHV-ELSDHVIDVVFCIFDEN----QDGQLSNREFIAVMKNR 213 (243)
Q Consensus 152 ~a~~~~~~~~g~i~~~e~~~~~~~~~g~-~ls~~~i~~if~~~D~d----~DG~is~~EF~~~~~~~ 213 (243)
..|.-|..+.+.++.++|.+++....+. .+++..+..++..+..+ ..+.+++++|...|...
T Consensus 4 ~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 4 EIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 3344443445678888888888777666 57899999999998766 47999999999988655
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.03 E-value=0.0033 Score=45.76 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChh-hHHHHHHHHHHhcccCCCCcCHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPK-KKSRIIKHVKKTFKENKLGISKEDYLK 139 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~-~~~~~~~~~~~~~d~~~g~I~~~EF~~ 139 (243)
...+...|..+|.|++|.|+..|++.+...+ .+++ -+..+++..+. ++|+.||..||..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~---n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDV---NKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-T---T-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCC---CCCCCCCHHHHcc
Confidence 4567788999999999999999998765432 2222 24555555443 3399999999975
No 97
>KOG0046|consensus
Probab=95.93 E-value=0.028 Score=50.55 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~ 141 (243)
.++..|...| |++|+|+..|+..++....-.......+.++.+....+.+ +|+|+|++|+..+
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 4678899999 9999999999999998751111112233444444444455 8999999999965
No 98
>KOG1707|consensus
Probab=95.86 E-value=0.11 Score=47.71 Aligned_cols=134 Identities=17% Similarity=0.269 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhc--CCChhhHHHHHHHHHHhcccC--CCCcCHHHHHHHHHH-ccC-cchH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYA--GYPPKKKSRIIKHVKKTFKEN--KLGISKEDYLKFFHF-LNN-INDV 150 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~d~~--~g~I~~~EF~~~~~~-~~~-~~~~ 150 (243)
..|.++|+..|.|++|.++-.|+-..=+..+ .+.+.+++.+-.-+......+ +..++..-|+.+... ... ..+-
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 4688999999999999999999876655543 455665555555555444333 556777778776532 111 1111
Q ss_pred HHHHHHHhHhcCCcCHHHHHHHHH-----HhcC--CCCCH---HHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 151 DTALTFYHIAGASIDRITLKHVAR-----TVAH--VELSD---HVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 151 ~~a~~~~~~~~g~i~~~e~~~~~~-----~~~g--~~ls~---~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+++. ...|+-+.-++..-+. .-.| .++++ ..+..+|..||.|+||.++..|+-.+....
T Consensus 275 tW~iL---R~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 275 TWTIL---RKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred hhhhh---hhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 11110 1112222222221110 0001 24444 347788999999999999999998877665
No 99
>KOG4065|consensus
Probab=95.49 E-value=0.024 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHH
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAV 209 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~ 209 (243)
|+.+.+.-|.|+||.|+|.||++.
T Consensus 119 iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 119 IDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhcccccCCCceeeHHHHHhh
Confidence 566777889999999999999864
No 100
>KOG0046|consensus
Probab=95.33 E-value=0.043 Score=49.41 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=47.8
Q ss_pred HHHHHHhHhcCCcCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhc
Q psy922 152 TALTFYHIAGASIDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLR 216 (243)
Q Consensus 152 ~a~~~~~~~~g~i~~~e~~~~~~~~~g~--~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~ 216 (243)
.+|.-.+..+|+++..++..++....-. ....++++.+....+.|.+|.|+++||+.++....++
T Consensus 23 ~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 23 EKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 3444345566888888888777664211 2346789999999999999999999999987775544
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.15 E-value=0.07 Score=36.24 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHHh---cCCChhhHHHHHHHHHHhcc-cCCCCcCHHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLAY---AGYPPKKKSRIIKHVKKTFK-ENKLGISKEDYLKFFH 142 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~d-~~~g~I~~~EF~~~~~ 142 (243)
+..+|..|-. +.+.|+.++|...|... ..++..++.+++.+...... ...+.+|++.|..|+.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5678999955 78999999999999865 24566677777777654221 1368999999999874
No 102
>KOG0169|consensus
Probab=94.71 E-value=0.12 Score=48.65 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=86.1
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHHH-HHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQ-KEILS 80 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~~-~~~l~ 80 (243)
.|++++|.++..|...+++.+....... ....++...+..+++++...+|..+...+. .-.+.
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~n~~l~~~----------------~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~ 208 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQLNVQLSES----------------KARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVY 208 (746)
T ss_pred HccccccccchhhHHHHHHHHHHhhhHH----------------HHHHHHHHHHhhccceehHHHHHHHHHhhccCchHH
Confidence 5899999999999999998886543110 011222334667889999999998875542 22566
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHh---cCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAY---AGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
..|..+-.+ .++++..+|...+... .+.+....+++++++...-... .+.++.+.|..|+.
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 777777655 8999999999998865 3456666777777764422222 56699999999873
No 103
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.38 E-value=0.012 Score=42.75 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHhH-hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHH
Q psy922 154 LTFYHI-AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIA 208 (243)
Q Consensus 154 ~~~~~~-~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~ 208 (243)
|.-.|. .+|.+++.|+..+...+ .-.+.-+...|+.+|.|+||.||..|+..
T Consensus 60 F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 60 FCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 333343 56777777777654322 12334477899999999999999999964
No 104
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.19 E-value=0.7 Score=35.91 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=53.5
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccC------CCccc--CccccccCcceeeecc-CCCCCCCcCHHHHHHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHR------DHANT--GHIYRGVNSALTTYFF-GENKDEKLTIEKFLDFQH 72 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~-d~~~~g~i~f~eF~~~~~ 72 (243)
||.|+||.|.+.|--..+++||++........ -+..+ +......-.-.+.... .+-|+.+=.|+.=-++
T Consensus 16 FDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrF-- 93 (174)
T PF05042_consen 16 FDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRF-- 93 (174)
T ss_pred eCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcC--
Confidence 89999999999999999999988732110000 00000 0000000000000000 1112222222211111
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 73 QLQKEILSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 73 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
..+++.++|..|++.+.+.+|..|+..+++.
T Consensus 94 --vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 94 --VPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred --CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 2346778999999988899999999988875
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=93.78 E-value=0.63 Score=43.50 Aligned_cols=84 Identities=13% Similarity=0.272 Sum_probs=59.6
Q ss_pred CCCCcCHHHHHHHHHHHH------HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhc---CCChhhHHHHHHHHHHhcc--
Q psy922 58 KDEKLTIEKFLDFQHQLQ------KEILSLEFIRKGPNDDGNITEGDFTELLLAYA---GYPPKKKSRIIKHVKKTFK-- 126 (243)
Q Consensus 58 ~~g~i~f~eF~~~~~~~~------~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~d-- 126 (243)
+.|.++|++|..+.+.+. ...+..+|..|-.+ .+.++.++|...|...- ..+..++..+++.+.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 458999999988877653 46889999999544 47899999999998762 2344456666665433211
Q ss_pred --cCCCCcCHHHHHHHHH
Q psy922 127 --ENKLGISKEDYLKFFH 142 (243)
Q Consensus 127 --~~~g~I~~~EF~~~~~ 142 (243)
.....++++.|..|+.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 1134689999999874
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=93.71 E-value=0.6 Score=43.61 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=56.3
Q ss_pred CCCcCHHHHHHHHHHcc--C---cchHHHHHHHHhHhcCCcCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHc-------c
Q psy922 129 KLGISKEDYLKFFHFLN--N---INDVDTALTFYHIAGASIDRITLKHVARTVAHVE-LSDHVIDVVFCIFD-------E 195 (243)
Q Consensus 129 ~g~I~~~EF~~~~~~~~--~---~~~~~~a~~~~~~~~g~i~~~e~~~~~~~~~g~~-ls~~~i~~if~~~D-------~ 195 (243)
.|.++|++|..|..... . -+++...|.-|..+++.++.++|..++....|.. .+.+.+..+|..+- .
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 67899999988765432 1 2345555554544556799999999998877653 56666777766541 1
Q ss_pred CCCCCcCHHHHHHHHHH
Q psy922 196 NQDGQLSNREFIAVMKN 212 (243)
Q Consensus 196 d~DG~is~~EF~~~~~~ 212 (243)
.+.+.++++.|...|..
T Consensus 94 ~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 94 YTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccCcCHHHHHHHHcC
Confidence 23356899999988864
No 107
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.63 E-value=0.55 Score=36.04 Aligned_cols=53 Identities=9% Similarity=0.312 Sum_probs=39.7
Q ss_pred CCcCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 162 ASIDRITLKHVARTVA--HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 162 g~i~~~e~~~~~~~~~--g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
..++...|.++++... +..++...++.+|..+-..+...|+|++|+.+|....
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4577788888877642 2358999999999998777778899999999998754
No 108
>KOG2243|consensus
Probab=93.35 E-value=0.12 Score=51.65 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=45.7
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
..|+.||+||.|.||..||.+++.....+++.+++-++.-... +.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~---dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEA---DENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhcc---CccccccHHHHHHHh
Confidence 4699999999999999999999987656777777666655443 337789999999844
No 109
>KOG0035|consensus
Probab=89.05 E-value=2.1 Score=41.59 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhh---HHHHHHHHHHhcccC-CCCcCHHHHHHHHHH-ccCcch
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKK---KSRIIKHVKKTFKEN-KLGISKEDYLKFFHF-LNNIND 149 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~---~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~-~~~~~~ 149 (243)
+...++..|+.+|+...|.++++++..++..+ |+..++ ..+-|.++-...+.+ .|.+++.+|..++.- ...++.
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 34578999999999999999999999999875 443332 223333333323333 589999999998742 122332
Q ss_pred H---HHHHHHHhHhcCCcCHHHHHH
Q psy922 150 V---DTALTFYHIAGASIDRITLKH 171 (243)
Q Consensus 150 ~---~~a~~~~~~~~g~i~~~e~~~ 171 (243)
- ..||..+....-++..+||..
T Consensus 824 ~~r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHh
Confidence 2 333433333333567777654
No 110
>KOG1029|consensus
Probab=89.03 E-value=0.57 Score=44.40 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
-+++..|+.+|+..+|++|-..-+.+|.. .+++...+..+|.- .|.+ ||+++-+||+-.|.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~q-S~Lpq~~LA~IW~L----sDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQ-SGLPQNQLAHIWTL----SDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHh-cCCchhhHhhheee----eccCCCCcccHHHHHHHHH
Confidence 46788999999999999999999998876 47887766666543 3344 99999999987654
No 111
>KOG1955|consensus
Probab=87.69 E-value=1.4 Score=39.81 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFHF 143 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~~ 143 (243)
|.+.+-..|+..-+|-+|+|+-.--+..+.+ ..++-.++..+|+-- |.+ ||-+++.||++.+++
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtK-Sklpi~ELshIWeLs----D~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTK-SKLPIEELSHIWELS----DVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhh-ccCchHHHHHHHhhc----ccCccccccHHHHHhhHhh
Confidence 6667778899999999999998888877776 356666677766543 344 999999999998864
No 112
>KOG1029|consensus
Probab=87.13 E-value=1.5 Score=41.70 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=49.9
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH--HhcCCCCCCCcc
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR--LLRGLEKPKDTG 225 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~--~~~~~~~~~~~~ 225 (243)
-.|+++-..-+.++.. -+|+...+..|+..-|.|+||+|+-+||+-+|.-. ...|.+-|..+.
T Consensus 208 rsG~Lsg~qaR~aL~q---S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq~lP~tlP 272 (1118)
T KOG1029|consen 208 RSGYLSGQQARSALGQ---SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQPLPKTLP 272 (1118)
T ss_pred cccccccHHHHHHHHh---cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3588988888877754 26888899999999999999999999999887764 245666665554
No 113
>KOG3555|consensus
Probab=87.12 E-value=0.4 Score=41.16 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=31.1
Q ss_pred ceeeeccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 48 ALTTYFFGENKDEKLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 48 ~~~~~~~d~~~~g~i~f~eF~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
+.|+...|.|.++.|+..|...+-....+.-++..|+..|...+|.||.+|....+..
T Consensus 253 gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 253 GWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3444455555566666655555443333344555556666555666666665555543
No 114
>KOG1955|consensus
Probab=86.85 E-value=1.1 Score=40.49 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=41.4
Q ss_pred cCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhc
Q psy922 161 GASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLR 216 (243)
Q Consensus 161 ~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~ 216 (243)
+|.|+-.--+.+... -.|+-.++..|+...|.|.||-|+..||+.+++--+.|
T Consensus 245 ~gfisGsaAknFFtK---Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 245 HGFISGSAAKNFFTK---SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred ccccccHHHHhhhhh---ccCchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 466665555555443 36777889999999999999999999999999876543
No 115
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=86.70 E-value=1.2 Score=21.91 Aligned_cols=18 Identities=33% Similarity=0.662 Sum_probs=13.8
Q ss_pred cCCCCCccCHHHHHHHHH
Q psy922 3 DLNGDGDVDSDEFEKVAT 20 (243)
Q Consensus 3 D~d~~G~I~~~E~~~~l~ 20 (243)
|.|+||.|+.-++.-+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 789999999998865443
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.04 E-value=2.2 Score=29.55 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCCh--------hhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPP--------KKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~--------~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.++++.+|+.+ .|++|.++...|...|.....++. .-++..++..+... .....|+-++|+.++.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~-~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV-QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT-TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc-CCCCccCHHHHHHHHH
Confidence 36789999999 788999999999988876421111 11445555555421 1256788888888874
No 117
>KOG3866|consensus
Probab=85.41 E-value=1.8 Score=36.80 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=42.0
Q ss_pred HHhhcCCCCCCCcCHHHHHHHHHHh----cCC--ChhhH-------HHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 82 EFIRKGPNDDGNITEGDFTELLLAY----AGY--PPKKK-------SRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 82 ~F~~~D~d~~G~Is~~el~~~l~~~----~~~--~~~~~-------~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
.|..+|.+++|+++..||..++..- .+- +.+++ -.|-..+.+..|.| +.-||.+||++-..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 4889999999999999999887642 111 11111 13334455556777 88899999988653
No 118
>KOG0042|consensus
Probab=84.57 E-value=1.9 Score=39.71 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=51.3
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHHhc-CCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHc
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLAYA-GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFL 144 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~ 144 (243)
.+..|..+|.|+.|+++..++.++|+... +++.+.+.+.+++++. .-+|.+...||..+++..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~---~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADE---NLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hhcceeeHHHHHHHHHHH
Confidence 44679999999999999999999999874 7887777777777664 228999999999987643
No 119
>KOG4578|consensus
Probab=81.85 E-value=2.1 Score=36.70 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELL 103 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l 103 (243)
..|+.+|.|++-.||..|+...|
T Consensus 374 k~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 374 KFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hcchhcccCCCceecHHHHhhhh
Confidence 34444444444444444444443
No 120
>KOG4578|consensus
Probab=80.37 E-value=1.4 Score=37.69 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
.++..|..+|+|.++-|...|++-.=.-+.. .....+-.+++.+..|.| |.+||+.||+..+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK--KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh--hccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 4567799999999999999887643221111 122344556666667777 89999999988663
No 121
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=79.11 E-value=1.4 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHccCCCCCcCHHHHHHHHH
Q psy922 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211 (243)
Q Consensus 180 ~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~ 211 (243)
-||+++.+.++.++-.|..|+|.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 37899999999999999999999999987554
No 122
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=78.41 E-value=7.7 Score=29.68 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=39.4
Q ss_pred HHhhcCCCCCCCcCHHHHHHHHHHh----cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 82 EFIRKGPNDDGNITEGDFTELLLAY----AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 82 ~F~~~D~d~~G~Is~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.|..|-..+...++...|.++++.. ..++...++-++.++.. .+...|+|++|..++.
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~---k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA---KGARKITFEQFLEALA 68 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT----SS-SEEEHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc---CCCcccCHHHHHHHHH
Confidence 4544555666789999999999875 23566666666666543 3356799999998774
No 123
>KOG3555|consensus
Probab=75.92 E-value=5.6 Score=34.43 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I~~~EF~~~~~ 142 (243)
..+...|..+|.+.+|.++..|++.+-. +-.+.=++.+++. .|.. +|.|+-.||..-+.
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l---dknE~CikpFfns----CD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL---DKNEACIKPFFNS----CDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc---cCchhHHHHHHhh----hcccccCccccchhhhhhc
Confidence 4577789999999999999999987632 1111224455544 4444 89999999998664
No 124
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.72 E-value=7.8 Score=27.10 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=32.0
Q ss_pred hcCCcCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAH-VELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g-~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
.||.++..|...+-..+.. .++++.+...++..+..-.+...++.+|.+.++.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666666666555443322 2566666666666666655556667777666554
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=75.11 E-value=2.6 Score=27.62 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhccc----CCCCcCHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKE----NKLGISKEDYLK 139 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~----~~g~I~~~EF~~ 139 (243)
+.+..+|+.+ .+++++|+..||++.| ++++.+-.++++...-+. ..|..+|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4677899999 8899999999999764 344454444444432211 136788888754
No 126
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=69.63 E-value=3.9 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=27.7
Q ss_pred CCCcCHHHHHHHHHHh---cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 91 DGNITEGDFTELLLAY---AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
||.|+..|...+...+ .++++.+...++..+.... ...+++.+|+...
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~l 87 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELK---QEPIDLEELLREL 87 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHH---HHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH---hccccHHHHHHHH
Confidence 6899999988665543 4566666666655544321 2356777776544
No 127
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=69.12 E-value=15 Score=23.66 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=35.7
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhhh
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEVF 241 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 241 (243)
++++++.++++...-|+-+|-..-.+. .|.+.-....-.++++.|+++..+.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~---~G~N~l~~~~~~s~~~~~~~~f~~~~ 58 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKK---YGPNELPEPKKKSLWRIFLKQFKNPF 58 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHH---HSSSSTTTTTSSSHHHHHHHHTTSHH
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHh---cccccccccccCcHHHHHHHHHHhHH
Confidence 567888888887777888776554433 36655433333456999999877654
No 128
>KOG3866|consensus
Probab=67.80 E-value=34 Score=29.39 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=25.1
Q ss_pred HHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCC
Q psy922 187 DVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKP 221 (243)
Q Consensus 187 ~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~ 221 (243)
+.+++..|+|.|-.|+.+||+..-.+. .+..|
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~t~~k---ef~~p 330 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLNDTDNK---EFNPP 330 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhhhhhc---ccCCc
Confidence 457889999999999999998866554 34555
No 129
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=66.38 E-value=36 Score=23.63 Aligned_cols=54 Identities=9% Similarity=0.251 Sum_probs=23.4
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.||.++..|...+-..+....+++.....+...+..-.+...++.+|...++..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 455555555554444333333433333333333332222224555555555443
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.82 E-value=12 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 181 ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+++..++.+...++.=..+.|+.+||++.|+.-
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 455555555555555556666666666666554
No 131
>KOG4347|consensus
Probab=63.57 E-value=6.6 Score=36.81 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHHH-----HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC
Q psy922 62 LTIEKFLDFQHQL-----QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN 128 (243)
Q Consensus 62 i~f~eF~~~~~~~-----~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~ 128 (243)
|+|..|..+++.+ ...-+..+|..+|.+++|.|+.++|...|..+.. .++.+-++-+.+.++.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~---~~~~ek~~l~y~lh~~p 603 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA---GDALEKLKLLYKLHDPP 603 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh---hhHHHHHHHHHhhccCC
Confidence 7888888877532 3345678999999999999999999988876521 22333344455555443
No 132
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=62.29 E-value=94 Score=26.10 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCcCHHHHHHHHHHh---cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHc--cCcchHHHHHHH-H--hHhcC
Q psy922 91 DGNITEGDFTELLLAY---AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFL--NNINDVDTALTF-Y--HIAGA 162 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~--~~~~~~~~a~~~-~--~~~~g 162 (243)
||.++..|.. +...+ .++++++.... .++.... .....++++|+.-+... ....-+...+.+ + ..+||
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a-~~lf~~~--k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~ADG 144 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAA-QQAFREG--KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFADG 144 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHH-HHHHHHh--cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC
Confidence 6999999998 44433 46666542222 3333311 13457888888755321 111111111111 1 23788
Q ss_pred CcCHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy922 163 SIDRITLKHVARTVAHVELSDHVIDVVFCI 192 (243)
Q Consensus 163 ~i~~~e~~~~~~~~~g~~ls~~~i~~if~~ 192 (243)
.++..|-.-+.+......+++.+.+.+...
T Consensus 145 ~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 145 SLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888877544433333346677666555544
No 133
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.29 E-value=7.5 Score=28.91 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHh
Q psy922 173 ARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLL 215 (243)
Q Consensus 173 ~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~ 215 (243)
+...+...++.++...+...+|.=+.+...-.|-++++++++.
T Consensus 5 i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~ 47 (133)
T smart00288 5 IDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLN 47 (133)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc
Confidence 3334455667777778888888666667888999999999985
No 134
>KOG4004|consensus
Probab=61.04 E-value=3.2 Score=33.03 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=37.4
Q ss_pred cCCC-CCCCcCHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhh
Q psy922 54 FGEN-KDEKLTIEKFLDFQHQL--QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKK 113 (243)
Q Consensus 54 ~d~~-~~g~i~f~eF~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~ 113 (243)
+|.. .+|.+|-.|...+-..+ .+.-....|.-.|.|++|+|+..|....+ |+.+.+
T Consensus 196 ld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~----gikq~d 254 (259)
T KOG4004|consen 196 LDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF----GIKQKD 254 (259)
T ss_pred ccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhccc----Ccchhc
Confidence 4433 67888888877654332 23345667888899999999988887663 555443
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=59.92 E-value=55 Score=22.65 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCCcCHHHHHHHHHHh---cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 91 DGNITEGDFTELLLAY---AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
||.++..|...+-..+ .++++.+...++..... ......++.+|..-+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 63 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEA---LEEEAPDLYEFTSLI 63 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HHHhCCCHHHHHHHH
Confidence 6888888877654432 47777766666655544 223457788887754
No 136
>KOG4070|consensus
Probab=59.37 E-value=15 Score=27.96 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 164 IDRITLKHVARTV---AHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 164 i~~~e~~~~~~~~---~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
++-..+..+++.+ .|..++...+..+|..+---.-+.++|++|..+|...-
T Consensus 34 m~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 34 MNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred cccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 4555555555432 35566777777888887777777888888877777654
No 137
>KOG1707|consensus
Probab=59.12 E-value=10 Score=35.31 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHF 143 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~ 143 (243)
+-+...|..||.|+||.++..|+..++....+.+..+ ......... ...|.++++-|+...++
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~-~~~~~~t~~---~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTS-SPYKDSTVK---NERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCC-Cccccccee---cccceeehhhHHHHHHH
Confidence 4577899999999999999999999887753222110 000011111 23789999999886543
No 138
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.01 E-value=12 Score=28.18 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHh
Q psy922 169 LKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLL 215 (243)
Q Consensus 169 ~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~ 215 (243)
|.+.+...+...+...+...+...+|.=+.....-.|=++++++++.
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~ 51 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLL 51 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Confidence 34444444444555566666666666444445577888888888874
No 139
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=58.86 E-value=25 Score=24.78 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCCh--hhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 78 ILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPP--KKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 78 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~--~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.+..-|..+-+ +|+++..+|..++ |+.+ +=..+++..+...-......|+.+|...|..
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 34456777666 7899999998886 4442 2234555555442222245677777777653
No 140
>KOG2243|consensus
Probab=56.70 E-value=88 Score=32.88 Aligned_cols=52 Identities=10% Similarity=0.268 Sum_probs=44.1
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
+.|.|++.+|.+++.. ....+..+++.+..-...|.+..++|++|+.-.+..
T Consensus 4070 gkgiiskkdf~kame~--~k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4070 GKGIISKKDFHKAMEG--HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred CCccccHHHHHHHHhc--cccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 4588999999998864 246788899999999999999999999999877654
No 141
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=56.66 E-value=34 Score=22.02 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHhHhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC
Q psy922 156 FYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQ 197 (243)
Q Consensus 156 ~~~~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~ 197 (243)
+....+++++..++.+.+... |..+|+..|....+.++.+|
T Consensus 6 ~L~~~~~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 6 ILAESDKPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCC
Confidence 345567889999999888875 78899999999999988876
No 142
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=55.30 E-value=18 Score=26.60 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=47.4
Q ss_pred CCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHH-----HHHHHHH
Q psy922 6 GDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQ-----LQKEILS 80 (243)
Q Consensus 6 ~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~-----~~~~~l~ 80 (243)
-||.|+..|...+...+......... ....+...++.-.....++.+|+..+.. .....++
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~ 101 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPE--------------EAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLR 101 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCH--------------HHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHH--------------HHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHH
Confidence 38999999999988877322111000 0011112223222235777788776533 2344667
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHH
Q psy922 81 LEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKS 115 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~ 115 (243)
.++...-.||.=.-...++-.-+....++++.+..
T Consensus 102 ~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~ 136 (140)
T PF05099_consen 102 MLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQ 136 (140)
T ss_dssp HHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS---
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHh
Confidence 78888877754333344444444444677766543
No 143
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.52 E-value=12 Score=28.27 Aligned_cols=64 Identities=8% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhhh
Q psy922 174 RTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEVF 241 (243)
Q Consensus 174 ~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 241 (243)
...+...++.++...+...+|.=+.....-.+=++++++++.. ..| .....-+.=+=.|++||-
T Consensus 6 ekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~--~v~l~AL~LLe~~vkNCG 69 (144)
T cd03568 6 EKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDP--NVQLRALTLLDACAENCG 69 (144)
T ss_pred HHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCH--HHHHHHHHHHHHHHHHCC
Confidence 3334456666677777778775544567788999999988742 222 121111222223888885
No 144
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=52.08 E-value=32 Score=26.87 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 180 ~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
..-++..++||.+++..+.+.|++.|..++++..
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 4567778999999999999999999999999874
No 145
>KOG4004|consensus
Probab=48.98 E-value=10 Score=30.30 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=32.9
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCC-HHHHHHHHHHHccCCCCCcCHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELS-DHVIDVVFCIFDENQDGQLSNREFIAV 209 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls-~~~i~~if~~~D~d~DG~is~~EF~~~ 209 (243)
.+|+++..||.-+- .+-++ +.-+...|...|.|+||+|+.+|+-..
T Consensus 201 ~d~~~sh~el~pl~----ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 201 IDGYLSHTELAPLR----APLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred cccccccccccccc----CCcccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 57888888886432 11222 223567899999999999999999754
No 146
>KOG1954|consensus
Probab=48.83 E-value=24 Score=31.30 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=33.4
Q ss_pred cCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHH
Q psy922 161 GASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIA 208 (243)
Q Consensus 161 ~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~ 208 (243)
+|+|+-..-++-| .+..++...+-.|++..|.|.||.++-+||.-
T Consensus 457 ~gk~sg~~ak~~m---v~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEM---VKSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHH---HhccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 5555544443322 13467888899999999999999999999964
No 147
>PF14178 YppF: YppF-like protein
Probab=48.73 E-value=68 Score=20.33 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 96 EGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 96 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
..||+..+...-++.|..++++++-..+.+= .|.|+..||...++
T Consensus 3 l~eLk~~F~~~k~y~p~~~NeLLDFar~~Yi--~gei~i~eYR~lvr 47 (60)
T PF14178_consen 3 LHELKQKFMQKKKYEPEDMNELLDFARKLYI--QGEISINEYRNLVR 47 (60)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 4667766665545666667777766665222 57888888888764
No 148
>KOG0998|consensus
Probab=48.20 E-value=9 Score=37.72 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
....+.++|...|.+++|.|+..+....+.. .|++...+.+.|...+. .+.+.+++.+|.-.+.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~-~gl~~~~l~~~w~l~d~---~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP-FGLSKPRLAHVWLLADT---QNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc-CCCChhhhhhhhhhcch---hccCcccccccchhhh
Confidence 3456777999999999999999999988776 57777777888877766 5689999999987654
No 149
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=47.61 E-value=1.4e+02 Score=23.55 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=40.3
Q ss_pred hcCCcCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHccCCCCCcCHHHHHH-HHHHHHhcCCCCCCCccHHHHHHHHHhhh
Q psy922 160 AGASIDRITLKHVARTVAHV-ELSDHVIDVVFCIFDENQDGQLSNREFIA-VMKNRLLRGLEKPKDTGFVKFIESIVLSD 237 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~-~ls~~~i~~if~~~D~d~DG~is~~EF~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 237 (243)
..+..+.+-+..+++.+... +++.-.+..+......-. +...|+. ++.+.+.+.+|+- .. .|+-|++|+
T Consensus 86 ~~~vf~~evla~~l~ql~~~~~lP~LfmRTviq~~~~~p----~L~~FV~~iL~rLi~kqvW~~--~~---lW~Gfi~C~ 156 (183)
T PF12295_consen 86 MRDVFTQEVLASALQQLVEQPPLPLLFMRTVIQALQKYP----SLRSFVSNILSRLIQKQVWKN--KK---LWEGFIKCA 156 (183)
T ss_pred ccccCCHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHhcC--hh---HHHHHHHHH
Confidence 33456777777777665432 455544555555554322 3455554 3333345556665 23 589999998
Q ss_pred hh
Q psy922 238 DE 239 (243)
Q Consensus 238 ~~ 239 (243)
+.
T Consensus 157 ~~ 158 (183)
T PF12295_consen 157 KR 158 (183)
T ss_pred HH
Confidence 75
No 150
>KOG4347|consensus
Probab=47.07 E-value=27 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 181 ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
.+...+..+|..+|.+++|.|++.+++..+....
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 3455677888888888888888888888776543
No 151
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=47.01 E-value=25 Score=22.16 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISK 134 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~ 134 (243)
++-|+.+|.... +.+.++..++.+.| ++++..+..+++++.. .|.|.+
T Consensus 7 e~YL~~Iy~l~~--~~~~v~~~~iA~~L----~vs~~tvt~ml~~L~~-----~GlV~~ 54 (60)
T PF01325_consen 7 EDYLKAIYELSE--EGGPVRTKDIAERL----GVSPPTVTEMLKRLAE-----KGLVEY 54 (60)
T ss_dssp HHHHHHHHHHHH--CTSSBBHHHHHHHH----TS-HHHHHHHHHHHHH-----TTSEEE
T ss_pred HHHHHHHHHHHc--CCCCccHHHHHHHH----CCChHHHHHHHHHHHH-----CCCEEe
Confidence 345666666665 56889999998875 6777778889998876 455544
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=44.68 E-value=89 Score=29.50 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=7.7
Q ss_pred CCcCHHHHHHHHH
Q psy922 130 LGISKEDYLKFFH 142 (243)
Q Consensus 130 g~I~~~EF~~~~~ 142 (243)
+.++.++|..|+.
T Consensus 38 ~~mt~~~l~~FL~ 50 (581)
T PLN02222 38 GVMTVDHLHRFLI 50 (581)
T ss_pred CCcCHHHHHHHHH
Confidence 4566666666553
No 153
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.57 E-value=85 Score=20.56 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCCcCHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcC
Q psy922 59 DEKLTIEKFLDFQHQ-LQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAG 108 (243)
Q Consensus 59 ~g~i~f~eF~~~~~~-~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~ 108 (243)
+-.++|.-....+.. +.......+...|+.=..+.|+.+||.+.++...|
T Consensus 6 sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345677666666543 23334444445554445788999999988887644
No 154
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=41.56 E-value=78 Score=18.98 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVK 122 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~ 122 (243)
+...|...|.. +.+.+..+...+... .|++...+..++..-.
T Consensus 11 ~~~~Le~~f~~-----~~~P~~~~~~~la~~-~~l~~~qV~~WF~nrR 52 (59)
T cd00086 11 QLEELEKEFEK-----NPYPSREEREELAKE-LGLTERQVKIWFQNRR 52 (59)
T ss_pred HHHHHHHHHHh-----CCCCCHHHHHHHHHH-HCcCHHHHHHHHHHHH
Confidence 34567788887 568999999888777 4888888888776644
No 155
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=40.88 E-value=24 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHHH
Q psy922 79 LSLEFIRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 79 l~~~F~~~D~d~~G~Is~~el~~~l~~ 105 (243)
+....+.||++++|.|+.-.++.++..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 456789999999999999999987753
No 156
>KOG0042|consensus
Probab=40.50 E-value=58 Score=30.47 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=45.8
Q ss_pred hcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~ 214 (243)
..|.++..+..++++... .+.+....+++.++.|.+-+|.++..||.+++..-.
T Consensus 606 k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 606 KKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 447778888888888763 578999999999999999999999999999887764
No 157
>KOG2871|consensus
Probab=39.91 E-value=30 Score=30.48 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAY 106 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 106 (243)
.+.+++.|+.+|+.++|+|+..-+..++...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 4578999999999999999999999888875
No 158
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.78 E-value=90 Score=23.61 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=37.2
Q ss_pred hcCCcCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q psy922 160 AGASIDRITLKHVARTVA-HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVL 235 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~-g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (243)
.+|.++..|...+...+. ..++++..++.+....-.-+.-.+++-.|...|++. +.+.++..+ ++-+|+
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~----Ld~e~R~el---i~~mwe 110 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH----LDEEQRLEL---IGLMWE 110 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----cCHHHHHHH---HHHHHH
Confidence 556666555443322211 235667777777666665566666777776665443 334444443 555554
No 159
>PLN02223 phosphoinositide phospholipase C
Probab=39.33 E-value=1.5e+02 Score=27.66 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHH---HHh---cCCChhhHHHHHHHHHHhcc----c-CCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELL---LAY---AGYPPKKKSRIIKHVKKTFK----E-NKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l---~~~---~~~~~~~~~~~~~~~~~~~d----~-~~g~I~~~EF~~~~~ 142 (243)
.+.++.+|..|- +++|.++...+.+.+ ... .+.+.++.+.+++.+..... . ..+.++.+.|..|+.
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 356778888884 677999999999988 433 23455667778877665321 0 135699999999873
No 160
>KOG0039|consensus
Probab=39.18 E-value=39 Score=32.30 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh--cCCC---hhhHHHHHHHHHHhcccC-CCCc
Q psy922 59 DEKLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAY--AGYP---PKKKSRIIKHVKKTFKEN-KLGI 132 (243)
Q Consensus 59 ~g~i~f~eF~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~---~~~~~~~~~~~~~~~d~~-~g~I 132 (243)
++ ++++||. +...-.+.+++-.|.++|. ++|.++.+++..++... .+.. .....++...+....+.+ .+.+
T Consensus 2 ~~-~~~~~~~-~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 78 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYI 78 (646)
T ss_pred CC-cchhhhc-ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccccee
Confidence 45 8888888 3333356788999999998 89999999999888764 1111 111223333333333333 5566
Q ss_pred CHHHHHHHH
Q psy922 133 SKEDYLKFF 141 (243)
Q Consensus 133 ~~~EF~~~~ 141 (243)
.++.+..++
T Consensus 79 ~~~~~~~ll 87 (646)
T KOG0039|consen 79 TNEDLEILL 87 (646)
T ss_pred eecchhHHH
Confidence 666665543
No 161
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=39.09 E-value=36 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=26.9
Q ss_pred chHHHHHHHHhHhcC-CcCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy922 148 NDVDTALTFYHIAGA-SIDRITLKHVARTVAHVELSDHVIDVVFCIF 193 (243)
Q Consensus 148 ~~~~~a~~~~~~~~g-~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~ 193 (243)
..+..|+++.....+ .++..+|.+.+.. |..+|+++|+.....+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV--GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACGV--GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTTT--T----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcCC--CeEECHHHHHHHHHHH
Confidence 346678887766544 7999999887653 6788999887776653
No 162
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.98 E-value=1.7e+02 Score=22.15 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHhhcCCCCCCCcCHHHHH---HHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q psy922 81 LEFIRKGPNDDGNITEGDFT---ELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFF 141 (243)
Q Consensus 81 ~~F~~~D~d~~G~Is~~el~---~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~ 141 (243)
.+|.+...| |.++..|.. .+++..+++++.++..++..... .+...|++-.|-..+
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~---~~~Ea~d~y~fts~l 92 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEE---AGYEAIDLYSFTSVL 92 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Confidence 578888776 568876654 44555578999999998888765 445667777776544
No 163
>PLN02228 Phosphoinositide phospholipase C
Probab=38.76 E-value=1.4e+02 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=15.9
Q ss_pred CChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 109 YPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
.++.++..++.... . ++.++.++|..|+.
T Consensus 21 ~~~~ei~~if~~~s----~-~~~~t~~~~~~FL~ 49 (567)
T PLN02228 21 EPPVSIKRLFEAYS----R-NGKMSFDELLRFVS 49 (567)
T ss_pred CCcHHHHHHHHHhc----C-CCccCHHHHHHHHH
Confidence 34555555554432 1 34577777766654
No 164
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=37.38 E-value=1.2e+02 Score=25.39 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCCcCHHHHHHHHHHcc--Cc--chHHHHHHHHhHhc-CCcCHHHHHHHHHHhcCCCCCHHH----HHHHHHHHccCCCC
Q psy922 129 KLGISKEDYLKFFHFLN--NI--NDVDTALTFYHIAG-ASIDRITLKHVARTVAHVELSDHV----IDVVFCIFDENQDG 199 (243)
Q Consensus 129 ~g~I~~~EF~~~~~~~~--~~--~~~~~a~~~~~~~~-g~i~~~e~~~~~~~~~g~~ls~~~----i~~if~~~D~d~DG 199 (243)
||.|+-.|-...-.+.. .+ +....|..+|..+. ...+..++.+.+....+. .... ++.+|...=. ||
T Consensus 69 DG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~--r~~l~~~lL~~l~~vA~A--DG 144 (267)
T PRK09430 69 KGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGG--RFDLLRMFLEIQIQAAFA--DG 144 (267)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHh--cC
Confidence 78899988874333222 22 22345667777643 446666666555543321 2223 3556666654 57
Q ss_pred CcCHHH
Q psy922 200 QLSNRE 205 (243)
Q Consensus 200 ~is~~E 205 (243)
.|+-.|
T Consensus 145 ~l~~~E 150 (267)
T PRK09430 145 SLHPNE 150 (267)
T ss_pred CCCHHH
Confidence 787766
No 165
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.06 E-value=29 Score=25.64 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcC
Q psy922 178 HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRG 217 (243)
Q Consensus 178 g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~ 217 (243)
...+.+++...+...+|.=..+...-.|=++++++++..+
T Consensus 10 s~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~ 49 (133)
T cd03561 10 SPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG 49 (133)
T ss_pred CcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Confidence 3344555566666666655555677788888888887543
No 166
>KOG0035|consensus
Probab=36.81 E-value=26 Score=34.42 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=58.5
Q ss_pred CcCCCCCccCHHHHHHHHHHHHcccccCcccCCCcccCccccccCcceeeeccCCCCCCCcCHHHHHHHHHHH-----HH
Q psy922 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQL-----QK 76 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~f~eF~~~~~~~-----~~ 76 (243)
+|....|..+..+|...|-.+|.+...+.... ..+ .-+...-|.++.|.++|.+|...|... ..
T Consensus 756 ~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~------~e~-----~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~ 824 (890)
T KOG0035|consen 756 QDKIDGGAASPEELLRCLMSLGYNTEEEEQGI------AEW-----FRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTE 824 (890)
T ss_pred HHHhhcccCCHHHHHHHHHhcCcccchhHHHH------HHH-----HHHHhccCcccccceeHHHHHhHhhhhhhhhcHH
Confidence 45667889999999999999997642111100 000 012233466778999999999998642 34
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTE 101 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~ 101 (243)
..+..+|..+=++.. +|..+||..
T Consensus 825 ~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 825 LRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHcchh-HHHHHHHHh
Confidence 566678887766665 777777765
No 167
>PLN02222 phosphoinositide phospholipase C 2
Probab=36.79 E-value=1.5e+02 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcC---CChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAG---YPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~---~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~ 142 (243)
...+..+|..|-. ++.++.++|...|...-+ .+.+.+..++++.... ...+.++++.|..|+.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~--~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSL--LHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhh--hhccCcCHHHHHHHhc
Confidence 3467778888753 478999999998876522 2344455666653221 1256799999999874
No 168
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=35.85 E-value=1.2e+02 Score=19.31 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=26.6
Q ss_pred chHHHHHHHHhHhcCCcCHHHHHHHHHHhcCCCCCHHHHHH
Q psy922 148 NDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDV 188 (243)
Q Consensus 148 ~~~~~a~~~~~~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~ 188 (243)
+.-..||.+|...+|.+...++.+.+ ++++..|..
T Consensus 7 p~rdkA~e~y~~~~g~i~lkdIA~~L------gvs~~tIr~ 41 (60)
T PF10668_consen 7 PNRDKAFEIYKESNGKIKLKDIAEKL------GVSESTIRK 41 (60)
T ss_pred cCHHHHHHHHHHhCCCccHHHHHHHH------CCCHHHHHH
Confidence 45678999999999999988887654 456666654
No 169
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=35.51 E-value=35 Score=22.97 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccC-CCCCcCHHHHHHHH
Q psy922 170 KHVARTVAHVELSDHVIDVVFCIFDEN-QDGQLSNREFIAVM 210 (243)
Q Consensus 170 ~~~~~~~~g~~ls~~~i~~if~~~D~d-~DG~is~~EF~~~~ 210 (243)
..+-..+.|.+.+.+.+..++...+.+ -=|.++.+|++.++
T Consensus 45 ~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 45 EELEEALIGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHTTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 333344468899999999999999765 34789999998765
No 170
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.43 E-value=40 Score=18.38 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.8
Q ss_pred CCCCcCHHHHHHHHHHHH
Q psy922 197 QDGQLSNREFIAVMKNRL 214 (243)
Q Consensus 197 ~DG~is~~EF~~~~~~~~ 214 (243)
+.|.|+++|++.+..+-.
T Consensus 1 ~~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRVN 18 (33)
T ss_pred CCceecHHHHHHHHHHHH
Confidence 368999999999887754
No 171
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=34.07 E-value=63 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=10.9
Q ss_pred CCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Q psy922 162 ASIDRITLKHVARTVAHVELSDHVIDVVFCIFD 194 (243)
Q Consensus 162 g~i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D 194 (243)
|+||..++..++.. ..+++..++.++..+.
T Consensus 20 G~lT~~eI~~~L~~---~~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 20 GYLTYDEINDALPE---DDLDPEQIDEIYDTLE 49 (82)
T ss_dssp SS-BHHHHHHH-S----S---HHHHHHHHHHHH
T ss_pred CcCCHHHHHHHcCc---cCCCHHHHHHHHHHHH
Confidence 44444444444321 2344455555554444
No 172
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=32.55 E-value=1.4e+02 Score=19.35 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHH
Q psy922 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210 (243)
Q Consensus 164 i~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~ 210 (243)
++..++.++++. .|.++|+.++..+++.=|..+--..+-..+...+
T Consensus 14 l~d~~m~~if~l-~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFAL-AGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHH-cCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 344455555544 3566666666666666333333333433333333
No 173
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.27 E-value=2.1e+02 Score=27.18 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=9.2
Q ss_pred CCCcCHHHHHHHHHH
Q psy922 198 DGQLSNREFIAVMKN 212 (243)
Q Consensus 198 DG~is~~EF~~~~~~ 212 (243)
.+.++.+.|...|..
T Consensus 88 ~~~~~~~~F~~yL~s 102 (598)
T PLN02230 88 RRNLTLDDFNYYLFS 102 (598)
T ss_pred ccccCHHHHHHHHcC
Confidence 345777777765544
No 174
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=31.55 E-value=1.7e+02 Score=19.99 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.9
Q ss_pred CcCHHHHHHHH
Q psy922 131 GISKEDYLKFF 141 (243)
Q Consensus 131 ~I~~~EF~~~~ 141 (243)
.||.+|++.+.
T Consensus 14 ~iT~~eLlkys 24 (85)
T PF11116_consen 14 NITAKELLKYS 24 (85)
T ss_pred cCCHHHHHHHH
Confidence 35555555554
No 175
>PLN02228 Phosphoinositide phospholipase C
Probab=30.52 E-value=2e+02 Score=27.07 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcC---CChhhHHHHHHHHHHhccc-CCCCcCHHHHHHHHH
Q psy922 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYAG---YPPKKKSRIIKHVKKTFKE-NKLGISKEDYLKFFH 142 (243)
Q Consensus 77 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~---~~~~~~~~~~~~~~~~~d~-~~g~I~~~EF~~~~~ 142 (243)
+.+..+|..+-. ++.++.++|...|...-+ .+.+.+..++..+...-.. ..+.++.+.|..|+.
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 456666666643 256888888777765422 1222344444443321001 135688888888763
No 176
>PLN02230 phosphoinositide phospholipase C 4
Probab=29.02 E-value=2.8e+02 Score=26.35 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcC----CChhhHHHHHHHHHHhcc---c-CCCCcCHHHHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAG----YPPKKKSRIIKHVKKTFK---E-NKLGISKEDYLKFFH 142 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~d---~-~~g~I~~~EF~~~~~ 142 (243)
...++.+|..|-.++ +.++.++|...|...-+ .+..++..++..+..... . ..+.++.+.|..|+.
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 356888899985444 89999999999987521 234445666666543221 1 135699999999873
No 177
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=28.99 E-value=2.6e+02 Score=21.24 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=47.9
Q ss_pred CCCcCHHHHHHHHHHh--cCCChhhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHccCcchHHHHHHHHhHhcCCcCHHH
Q psy922 91 DGNITEGDFTELLLAY--AGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRIT 168 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~~~g~i~~~e 168 (243)
||.++..|...+-.-+ .+++++.....++. . . +-.++...|...........-+..++ .-..+||.++..|
T Consensus 37 DG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~-~----~-~~~L~~~~~~~~~~~~~~~~ll~~~l-~vA~ADG~l~~~E 109 (150)
T cd07311 37 DGVISPEERDWAIGYAAARGGDADMVEELKEY-T----A-DEDLEEVDFRSPNIKSSRRALLYDAI-QVCAADGELSPGE 109 (150)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh-C----c-cccHHHHHHHHHhcchhHHHHHHHHH-HHHHcCCCCCHHH
Confidence 7999999997554433 36777665555554 1 1 22222222211110000000011111 1123789898887
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH
Q psy922 169 LKHVARTVAHVELSDHVIDVVFCI 192 (243)
Q Consensus 169 ~~~~~~~~~g~~ls~~~i~~if~~ 192 (243)
-.-+.+.....++++.+...+.+.
T Consensus 110 ~~lL~~iA~~LGis~~~~~~l~~~ 133 (150)
T cd07311 110 VAAVRKAASLLGISEDEVQKLEEI 133 (150)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 665544444457888887777665
No 178
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=28.89 E-value=2.7e+02 Score=21.31 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=6.1
Q ss_pred CCcCHHHHHHHHH
Q psy922 60 EKLTIEKFLDFQH 72 (243)
Q Consensus 60 g~i~f~eF~~~~~ 72 (243)
+.|++..|..+++
T Consensus 98 ~~i~~~~ff~~lQ 110 (175)
T PF04876_consen 98 GLIDIGKFFDILQ 110 (175)
T ss_pred cceeHHHHHHHHH
Confidence 3445554444443
No 179
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=28.87 E-value=66 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q psy922 203 NREFIAVMKNRLLRGLEKPKDTGFVKFIESIVL 235 (243)
Q Consensus 203 ~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (243)
-.||+.-++.. .|.+|...+..+--|+|-|+.
T Consensus 28 AkeFL~~l~R~-kR~lWDRsrPdVQQW~qQFlY 59 (114)
T PF15187_consen 28 AKEFLASLKRQ-KRQLWDRSRPDVQQWYQQFLY 59 (114)
T ss_pred HHHHHHHhhhH-HHhhhccCCHHHHHHHHHHHH
Confidence 36899988887 579999999999999999986
No 180
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=28.76 E-value=2e+02 Score=19.86 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Q psy922 182 SDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213 (243)
Q Consensus 182 s~~~i~~if~~~D~d~DG~is~~EF~~~~~~~ 213 (243)
.+.-+...|... ...-.|+.++|+..|...
T Consensus 47 ~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 47 IEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp -HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred cHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 455577778775 356679999999988765
No 181
>KOG0039|consensus
Probab=28.44 E-value=1e+02 Score=29.49 Aligned_cols=61 Identities=8% Similarity=0.232 Sum_probs=35.8
Q ss_pred HHHHHHhHhcCCcCHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHH
Q psy922 152 TALTFYHIAGASIDRITLKHVARTVA-------HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212 (243)
Q Consensus 152 ~a~~~~~~~~g~i~~~e~~~~~~~~~-------g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~ 212 (243)
.-|..++..+|.++.+++.+++.... ....+.+....++...|.+..|++.++.+..++..
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 22 TFFDMYDKGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred HHHHHHhhhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 33334444555555555555543221 11234455677888899998888887777666653
No 182
>KOG1265|consensus
Probab=28.38 E-value=6.3e+02 Score=25.49 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=72.1
Q ss_pred CCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccC-CCCc-----CHHHHHHHHHHccCcchHHHHHHHHhH-
Q psy922 87 GPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKEN-KLGI-----SKEDYLKFFHFLNNINDVDTALTFYHI- 159 (243)
Q Consensus 87 D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~-~g~I-----~~~EF~~~~~~~~~~~~~~~a~~~~~~- 159 (243)
-.+..|+|....+.+++.+ +-+...++..+...- +..+ ...| +++.|..++..+..-.+++..|.-+.-
T Consensus 158 qvn~~grip~knI~k~F~~--~k~~KrVe~al~~~g--Lp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~ 233 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA--DKKEKRVEKALEACG--LPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGK 233 (1189)
T ss_pred cccccccccHHHHHHHhhc--CCchhHHHHHHHhcC--CCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccC
Confidence 4677899998888777653 222222332222211 1112 2334 455555544322222344544432222
Q ss_pred hcCCcCHHHHHHHHHHhc---------CCCCCHHHHHHHHHHHccCC----CCCcCHHHHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVA---------HVELSDHVIDVVFCIFDENQ----DGQLSNREFIAVMKN 212 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~---------g~~ls~~~i~~if~~~D~d~----DG~is~~EF~~~~~~ 212 (243)
..-+++.++|..++.... -+.+++..+..++..+-.|+ .|.+|-+-|++.+..
T Consensus 234 ~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 234 KKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 235799999999986532 24667888999999998886 489999999886654
No 183
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=28.09 E-value=1.3e+02 Score=22.42 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=35.2
Q ss_pred hcCCcCHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHccCCCCC-cCHHHHHHH
Q psy922 160 AGASIDRITLKHVARTVAH--------VELSDHVIDVVFCIFDENQDGQ-LSNREFIAV 209 (243)
Q Consensus 160 ~~g~i~~~e~~~~~~~~~g--------~~ls~~~i~~if~~~D~d~DG~-is~~EF~~~ 209 (243)
++-.||.+||.+.+..-.+ ..++++++..+-+.+...+.+. ++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 3455788888877765322 1567888888888888876664 888887664
No 184
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.85 E-value=1.1e+02 Score=22.99 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=39.0
Q ss_pred HhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhhh
Q psy922 175 TVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEVF 241 (243)
Q Consensus 175 ~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 241 (243)
..+...++.++...+...+|.=+.+...-.+=++++++++..+ ..|+..- .-+.=+=.|++||-
T Consensus 8 kATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~-~n~~v~l--~aL~LLe~~vkNCG 71 (141)
T cd03565 8 KATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGN-KNHKEVM--LTLTVLETCVKNCG 71 (141)
T ss_pred HHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccC-CCHHHHH--HHHHHHHHHHHHcc
Confidence 3345566666777788888865566778899999999988421 2222111 01222233888885
No 185
>PLN02223 phosphoinositide phospholipase C
Probab=27.61 E-value=2.6e+02 Score=26.19 Aligned_cols=14 Identities=7% Similarity=-0.054 Sum_probs=8.1
Q ss_pred CCcCHHHHHHHHHH
Q psy922 199 GQLSNREFIAVMKN 212 (243)
Q Consensus 199 G~is~~EF~~~~~~ 212 (243)
+.++.+.|...|..
T Consensus 79 ~~l~~~~f~~~L~s 92 (537)
T PLN02223 79 RCLELDHLNEFLFS 92 (537)
T ss_pred cccCHHHHHHHhcC
Confidence 44666666665543
No 186
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=27.48 E-value=52 Score=26.53 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.5
Q ss_pred CcCCCCCccCHHHHHHHHHHH
Q psy922 2 FDLNGDGDVDSDEFEKVATLI 22 (243)
Q Consensus 2 fD~d~~G~I~~~E~~~~l~~l 22 (243)
+|.|+||.++.+|+..+.+..
T Consensus 59 ~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 59 LDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhcccCCCCHHHHHHHHHHH
Confidence 689999999999999987654
No 187
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=27.13 E-value=2.2e+02 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=8.1
Q ss_pred CCcCHHHHHHHHHHh
Q psy922 92 GNITEGDFTELLLAY 106 (243)
Q Consensus 92 G~Is~~el~~~l~~~ 106 (243)
+.|+.+-|+..|+.+
T Consensus 47 ~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTY 61 (138)
T ss_dssp TEE-HHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 356666666666555
No 188
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=26.74 E-value=1.2e+02 Score=23.21 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHH
Q psy922 76 KEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLK 139 (243)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~ 139 (243)
++-|+.++.... ++|++...+++..| ++++..+.++++++.. .|.|.|+.+..
T Consensus 9 edYL~~Iy~l~~--~~~~~~~~diA~~L----~Vsp~sVt~ml~rL~~-----~GlV~~~~y~g 61 (154)
T COG1321 9 EDYLETIYELLE--EKGFARTKDIAERL----KVSPPSVTEMLKRLER-----LGLVEYEPYGG 61 (154)
T ss_pred HHHHHHHHHHHh--ccCcccHHHHHHHh----CCCcHHHHHHHHHHHH-----CCCeEEecCCC
Confidence 344555565554 67999999999876 5667778889999876 56676655544
No 189
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.40 E-value=2e+02 Score=21.48 Aligned_cols=65 Identities=2% Similarity=0.000 Sum_probs=34.5
Q ss_pred HHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhhh
Q psy922 173 ARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEVF 241 (243)
Q Consensus 173 ~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 241 (243)
+...+...++.+....+...+|.=+.....-.+=++++++++. ...|+ ....-+.=+=.|++||-
T Consensus 6 iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~--~~n~~--v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 6 LNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQ--SPQEK--EALQALTVLEACMKNCG 70 (139)
T ss_pred HHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHc--CCCHH--HHHHHHHHHHHHHHHcC
Confidence 3344445566666666666666333333466788888888863 12221 21112222234888884
No 190
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=25.86 E-value=1.6e+02 Score=17.66 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKH 120 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~ 120 (243)
+...|...|.. +.+++..+...+...+ +++...+..++.+
T Consensus 11 q~~~L~~~f~~-----~~~p~~~~~~~la~~l-~l~~~~V~~WF~n 50 (57)
T PF00046_consen 11 QLKVLEEYFQE-----NPYPSKEEREELAKEL-GLTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHHH-----SSSCHHHHHHHHHHHH-TSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccccccccccccccc-cccccccccCHHH
Confidence 44567777874 5788888888777664 8888877777654
No 191
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=25.85 E-value=76 Score=25.14 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCC--ChhhHHHHHHHHHHhcccCCCCcCHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGY--PPKKKSRIIKHVKKTFKENKLGISKEDYL 138 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~d~~~g~I~~~EF~ 138 (243)
+.+..+++|..||++.=-..+.+++.++|... ++ ...+++..+.+......-....=||.+|+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~-gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~fl 117 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADA-GIIRNRGKIKATINNARAVLELQKEFGSFSEFL 117 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc-chhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45778999999999998889999999988753 32 23456666666554333222233566665
No 192
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=25.63 E-value=1.1e+02 Score=20.85 Aligned_cols=39 Identities=5% Similarity=0.100 Sum_probs=29.0
Q ss_pred CCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy922 196 NQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIV 234 (243)
Q Consensus 196 d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (243)
.|...+++++.+..+.......+|..-..++...|+.|+
T Consensus 47 ~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 47 RGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp H-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 567789999999988888777788887777766666664
No 193
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=25.60 E-value=2.9e+02 Score=20.72 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHHh---cccC-CCCcCHHHHHHHH
Q psy922 91 DGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKT---FKEN-KLGISKEDYLKFF 141 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~---~d~~-~g~I~~~EF~~~~ 141 (243)
-+.||+.||.++= .+..++..++..+++....- ..-+ .+.|+|+-|..|+
T Consensus 5 ~~~lsp~eF~qLq-~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 5 WVSLSPEEFAQLQ-KYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp -S-S-HHHHHHHH-HHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eeccCHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 3677888887643 33334445566666665420 0011 3456666666655
No 194
>KOG1265|consensus
Probab=25.39 E-value=4.3e+02 Score=26.57 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCCcCHHHHHHHHHHccCcchHHHHHHHHhHhcC---Cc-----CHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCCC
Q psy922 129 KLGISKEDYLKFFHFLNNINDVDTALTFYHIAGA---SI-----DRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQ 200 (243)
Q Consensus 129 ~g~I~~~EF~~~~~~~~~~~~~~~a~~~~~~~~g---~i-----~~~e~~~~~~~~~g~~ls~~~i~~if~~~D~d~DG~ 200 (243)
.|+|-...++..+..-..-..+++|...+....| .| +.+.|..++..++ ...+|+.||..+-.++--+
T Consensus 162 ~grip~knI~k~F~~~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc----pR~eie~iF~ki~~~~kpy 237 (1189)
T KOG1265|consen 162 EGRIPVKNIIKTFSADKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC----PRPEIEEIFRKISGKKKPY 237 (1189)
T ss_pred cccccHHHHHHHhhcCCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC----CchhHHHHHHHhccCCCcc
Confidence 6778777777766432222456667664443222 34 4455555565543 2367999999999998889
Q ss_pred cCHHHHHHHHHHH
Q psy922 201 LSNREFIAVMKNR 213 (243)
Q Consensus 201 is~~EF~~~~~~~ 213 (243)
++.++++..+...
T Consensus 238 lT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 238 LTKEQLVDFLNKK 250 (1189)
T ss_pred ccHHHHHHHHhhh
Confidence 9999999999874
No 195
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.14 E-value=58 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.1
Q ss_pred hhcCCCCCCCcCHHHHHHHHHH
Q psy922 84 IRKGPNDDGNITEGDFTELLLA 105 (243)
Q Consensus 84 ~~~D~d~~G~Is~~el~~~l~~ 105 (243)
+.||...+.+|+.++++.++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999988875
No 196
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=25.08 E-value=1.2e+02 Score=21.65 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhcCCChhhHHHHHHHHHHhcccCCCCcCHHHHHH
Q psy922 95 TEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLK 139 (243)
Q Consensus 95 s~~el~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~g~I~~~EF~~ 139 (243)
+.+|+.+++.-+.|+++.++...+ ...++|++|..
T Consensus 24 t~~Evd~vi~WLTGy~~~~l~~~~----------~~~~~~~~FF~ 58 (111)
T PF09966_consen 24 TKEEVDQVIRWLTGYDQEELQAQI----------ESKVTFETFFA 58 (111)
T ss_dssp -HHHHHHHHHHHH---HHHHHHHT----------TS--BHHHHHH
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHH----------HcCCCHHHHHH
Confidence 466777777666778765443322 34689999966
No 197
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=25.06 E-value=74 Score=25.26 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCC--ChhhHHHHHHHHHHhcccCCCCcCHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGY--PPKKKSRIIKHVKKTFKENKLGISKEDYL 138 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~d~~~g~I~~~EF~ 138 (243)
+.+.++++|.-||++.=-..+.+++..++..- ++ ...+++..+++.....+-....-||.+|+
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~-~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDA-GIIRHRGKIQAIIGNARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-hhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45789999999999987778899999887642 22 23456666665544332222234777776
No 198
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.14 E-value=3.7e+02 Score=21.43 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHccCCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhh
Q psy922 182 SDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDE 239 (243)
Q Consensus 182 s~~~i~~if~~~D~d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 239 (243)
+++....+...|.+|+.|.|+...-+.+.+-. +. +..+..-|+.+-.|.+-
T Consensus 117 ~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~----i~---D~~w~~am~aI~dsi~v 167 (195)
T PF11363_consen 117 DPELRALVNRAFQVDKEGNLNTSRILGLRRLE----ID---DERWQEAMDAIKDSIQV 167 (195)
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHhcc----CC---CHHHHHHHHHHHhceEe
Confidence 45556667788999999999999888765543 22 44665666776666543
No 199
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=23.86 E-value=66 Score=22.32 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=10.5
Q ss_pred CCCcCHHHHHHHHHH
Q psy922 129 KLGISKEDYLKFFHF 143 (243)
Q Consensus 129 ~g~I~~~EF~~~~~~ 143 (243)
||.|+-+|-..+...
T Consensus 16 DG~v~~~E~~~i~~~ 30 (111)
T cd07176 16 DGDIDDAELQAIEAL 30 (111)
T ss_pred ccCCCHHHHHHHHHH
Confidence 678888777766543
No 200
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.77 E-value=97 Score=24.42 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHhcCC--ChhhHHHHHHHHHHhcccCCCCcCHHHHH
Q psy922 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGY--PPKKKSRIIKHVKKTFKENKLGISKEDYL 138 (243)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~d~~~g~I~~~EF~ 138 (243)
+.+.++++|.-||++.=-..+.+++.+++..- ++ ...++...+.+.....+-..+ ||.+|+
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~yl 113 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATIANARAALQLEQN--DLVEFL 113 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence 45678999999999988888999998887642 33 233566666655443332222 777776
No 201
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=23.65 E-value=1.3e+02 Score=20.34 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHccCCCCCcCHHHHHHHH
Q psy922 172 VARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210 (243)
Q Consensus 172 ~~~~~~g~~ls~~~i~~if~~~D~d~DG~is~~EF~~~~ 210 (243)
+++...|-.+++..++.+-+.++.-....|+++|.+...
T Consensus 37 WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 37 WLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 444445667888888888888888878889999998743
No 202
>KOG0998|consensus
Probab=23.53 E-value=66 Score=31.89 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=92.3
Q ss_pred eeeccCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHh----cCCChhhHHHHHHHHHH
Q psy922 50 TTYFFGENKDEKLTIEKFLDFQHQ--LQKEILSLEFIRKGPNDDGNITEGDFTELLLAY----AGYPPKKKSRIIKHVKK 123 (243)
Q Consensus 50 ~~~~~d~~~~g~i~f~eF~~~~~~--~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~~~~~~~~~~~~~~~ 123 (243)
+.+..|..+.|.|+=.+=..++.. +....+-++...-|..+.|++...+|...++.. .+..... .....+...
T Consensus 16 ~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~-~~~~~~~~~ 94 (847)
T KOG0998|consen 16 YFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSA-KKVLPASAV 94 (847)
T ss_pred hhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCc-cccccccCC
Confidence 344567888888887776666542 455677777888888888888888888777653 1211110 010011000
Q ss_pred ------hcccC-CCCcCHHHHHHHHHHccCcchHHHH--HHHHh---HhcCCcCHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy922 124 ------TFKEN-KLGISKEDYLKFFHFLNNINDVDTA--LTFYH---IAGASIDRITLKHVARTVAHVELSDHVIDVVFC 191 (243)
Q Consensus 124 ------~~d~~-~g~I~~~EF~~~~~~~~~~~~~~~a--~~~~~---~~~g~i~~~e~~~~~~~~~g~~ls~~~i~~if~ 191 (243)
.++.. -...+.. .........+..-..| -.+|. ...|.++-...+.++. ...|+...+..++.
T Consensus 95 pp~~~~~~~~~~~~~~~~~--~s~~~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~---~s~Lp~~~l~~iw~ 169 (847)
T KOG0998|consen 95 PPPPKISHDTSPPSRPSSS--TSAAPFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILL---NSKLPSDVLGRIWE 169 (847)
T ss_pred CCCCccCccCCCcccCCCC--CCCcccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhh---cCCCChhhhccccc
Confidence 00000 0000000 0000000011111111 11232 2456666666665553 34677777888999
Q ss_pred HHccCCCCCcCHHHHHHHHHHHH--hc--CCCCCCCcc
Q psy922 192 IFDENQDGQLSNREFIAVMKNRL--LR--GLEKPKDTG 225 (243)
Q Consensus 192 ~~D~d~DG~is~~EF~~~~~~~~--~~--~~~~~~~~~ 225 (243)
..|.|.+|.|...||.-.|+-.. .. ..++|++..
T Consensus 170 l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~p 207 (847)
T KOG0998|consen 170 LSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRLP 207 (847)
T ss_pred cccccccCCCChhhhhhhhhHHHHHhhcccCCCCccCC
Confidence 99999999999999999888753 23 345555443
No 203
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.10 E-value=1.7e+02 Score=20.29 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCCCC
Q psy922 198 DGQLSNREFIAVMKNRLLRGLEKPK 222 (243)
Q Consensus 198 DG~is~~EF~~~~~~~~~~~~~~~~ 222 (243)
||.|+.+||..-+...+. ..++|-
T Consensus 37 ~~~i~~EeF~~~Lq~~ln-s~~qP~ 60 (92)
T smart00549 37 NGTITAEEFTSRLQEALN-SPLQPY 60 (92)
T ss_pred hCCCCHHHHHHHHHHHHc-CCCCch
Confidence 799999999998888763 335553
No 204
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=21.75 E-value=2.7e+02 Score=19.06 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=14.5
Q ss_pred HHHHHHHHccCCCCCcCHHHHHHH
Q psy922 186 IDVVFCIFDENQDGQLSNREFIAV 209 (243)
Q Consensus 186 i~~if~~~D~d~DG~is~~EF~~~ 209 (243)
...+=..+|.-.||+||.=||--.
T Consensus 44 ~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 44 AMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred HHHHHHHHhcccCCccchhhhHHH
Confidence 344455667777777777777543
No 205
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.72 E-value=1.4e+02 Score=19.09 Aligned_cols=29 Identities=10% Similarity=0.371 Sum_probs=20.2
Q ss_pred CCCcCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy922 91 DGNITEGDFTELLLAYAGYPPKKKSRIIKHVKK 123 (243)
Q Consensus 91 ~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~ 123 (243)
.|.+|..|+..- ++++++.++.+++.+..
T Consensus 12 ~~~~S~~eLa~~----~~~s~~~ve~mL~~l~~ 40 (69)
T PF09012_consen 12 RGRVSLAELARE----FGISPEAVEAMLEQLIR 40 (69)
T ss_dssp S-SEEHHHHHHH----TT--HHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHH----HCcCHHHHHHHHHHHHH
Confidence 588998888754 47788888888888765
No 206
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=20.77 E-value=1e+02 Score=16.66 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=12.3
Q ss_pred cCHHHHHHHHHHhcCCC
Q psy922 164 IDRITLKHVARTVAHVE 180 (243)
Q Consensus 164 i~~~e~~~~~~~~~g~~ 180 (243)
.+..+|+.+++.++|..
T Consensus 10 ~d~~~Fr~lVQ~LTG~~ 26 (31)
T PF05678_consen 10 TDPSNFRALVQRLTGAP 26 (31)
T ss_pred eCHHHHHHHHHHhHCcC
Confidence 45678888888887753
No 207
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=20.39 E-value=1.8e+02 Score=20.44 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=19.7
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHH
Q psy922 197 QDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIES 232 (243)
Q Consensus 197 ~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (243)
-||.|+.+||..-+...+. ..++| -+.-|+++
T Consensus 37 ~~~~i~~EeF~~~Lq~~ln-s~pqP---~lvPFLK~ 68 (96)
T PF07531_consen 37 VDGKIEAEEFTSKLQEELN-SSPQP---YLVPFLKK 68 (96)
T ss_dssp HTTSS-HHHHHHHHHHHCT-SS--T---THHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHhc-CCCCc---chHHHHHH
Confidence 3789999999988877753 33444 44445554
No 208
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=20.36 E-value=3.8e+02 Score=22.31 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=12.5
Q ss_pred eccCCC-CCCCcCHHHHHHHH
Q psy922 52 YFFGEN-KDEKLTIEKFLDFQ 71 (243)
Q Consensus 52 ~~~d~~-~~g~i~f~eF~~~~ 71 (243)
.-++.+ .+..|=+.||..-+
T Consensus 127 ~r~~~~F~~dDliLaEy~aTV 147 (251)
T TIGR02787 127 ARSDKEFNDDDLVLAEYAATV 147 (251)
T ss_pred EEcCCCCCcccchhhhhHhHH
Confidence 334443 55678888997743
No 209
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=20.35 E-value=1.3e+02 Score=18.53 Aligned_cols=38 Identities=11% Similarity=-0.090 Sum_probs=19.2
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhh
Q psy922 200 QLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEV 240 (243)
Q Consensus 200 ~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 240 (243)
-|+-+|-. .++...|.+......-.++++.||++.++.
T Consensus 10 GLs~~~v~---~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p 47 (64)
T smart00831 10 GLSSEEAA---RRLERYGPNELPPPKKRSPLLRFLRQFHNP 47 (64)
T ss_pred CCCHHHHH---HHHHHhCCCCCCCCCCCCHHHHHHHHHHhH
Confidence 34555532 233334655533332234677777766554
No 210
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=20.06 E-value=69 Score=26.66 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=27.8
Q ss_pred CCCCCcCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHhhhhhh
Q psy922 196 NQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEV 240 (243)
Q Consensus 196 d~DG~is~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 240 (243)
||++.+|.+|=-++--+.. -+.|-++++++.++.+|+.|.+.|
T Consensus 70 dg~~~LS~EEk~RL~lKe~--VL~Qvr~T~LFk~V~~~L~s~~s~ 112 (264)
T PF09328_consen 70 DGGSSLSKEEKERLALKEE--VLQQVRETELFKHVTKWLSSSNSC 112 (264)
T ss_pred cCCCCCCHHHHHHHHHHHH--HHHHHHhchHHHHHHHHHhccccc
Confidence 5556677777665433332 355667888888888888875443
No 211
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.02 E-value=1.3e+02 Score=16.02 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=12.4
Q ss_pred CCccCHHHHHHHHHHH
Q psy922 7 DGDVDSDEFEKVATLI 22 (243)
Q Consensus 7 ~G~I~~~E~~~~l~~l 22 (243)
+|.||.+||...-+.+
T Consensus 14 ~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 14 KGEISEEEYEQKKARL 29 (31)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6999999998765543
Done!