RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy922
(243 letters)
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 160 AGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I R LK + + LS+ +D++F FD + DG++S EF +++
Sbjct: 1 EKGLITREELKRALALLG-ISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 32.8 bits (75), Expect = 0.18
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 161 GASIDRITLKHVARTV----AHVELSDH----VIDVVFCIFDENQDGQLSNREFIAVMKN 212
+DR L +VART ++L+D V+D V I + +D L E + +
Sbjct: 140 EDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIMEMKHK 199
Query: 213 -----RLLRGL 218
L+RGL
Sbjct: 200 SATDTTLIRGL 210
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 28.6 bits (65), Expect = 0.23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 186 IDVVFCIFDENQDGQLSNREFIAVMKN 212
+ F FD++ DG++S EF ++K
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKK 28
Score = 24.3 bits (54), Expect = 7.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 1 MFDLNGDGDVDSDEFEKVATLI 22
FD +GDG + +EF+++ +
Sbjct: 8 EFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 28.1 bits (64), Expect = 0.39
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 186 IDVVFCIFDENQDGQLSNREFIAVMKN 212
+ F +FD++ DG++ EF ++K
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28
Score = 25.4 bits (57), Expect = 2.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 1 MFDLNGDGDVDSDEFEKVATLI 22
+FD +GDG +D +EF+ + +
Sbjct: 8 LFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 28.0 bits (64), Expect = 0.40
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 1 MFDLNGDGDVDSDEFEKVA 19
FD NGDG + +E +++
Sbjct: 7 QFDTNGDGKISKEELKRLL 25
>gnl|CDD|224309 COG1391, GlnE, Glutamine synthetase adenylyltransferase
[Posttranslational modification, protein turnover,
chaperones / Signal transduction mechanisms].
Length = 963
Score = 30.4 bits (69), Expect = 0.98
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 182 SDHVIDVVFCIFDEN---QDGQLSNREFIAVMKNRLLRGLEKPKDTGFV 227
SD ID++F ++ E+ Q G+L N EF + RL+R L++ GFV
Sbjct: 191 SD--IDLIF-VYPESGPTQGGELDNAEFFTRLGQRLIRILDERTGDGFV 236
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 186 IDVVFCIFDENQDGQLSNREFIAVMK 211
+ F +FD++ DG +S E A +K
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALK 27
Score = 24.8 bits (55), Expect = 9.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MFDLNGDGDVDSDEF 15
D +GDG +D +EF
Sbjct: 44 EVDKDGDGKIDFEEF 58
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor.
Length = 548
Score = 29.5 bits (66), Expect = 1.7
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 97 GDFTELLLAYAGYPPKKKSRIIKHVKK-TFKEN-KLGISKEDYLKFFHFLN------NIN 148
G + + A A P K+R + +VKK T+KEN ++G K++ + ++ ++N
Sbjct: 246 GKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLN 305
Query: 149 DVDTALTF 156
+D + TF
Sbjct: 306 VIDGSTTF 313
>gnl|CDD|225583 COG3041, COG3041, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 91
Score = 27.7 bits (62), Expect = 1.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 3 DLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTY 52
L G +D D+ +KV TL+ + R++DH TG ++G
Sbjct: 16 KLIKRGPLDMDKLKKVITLLANDLPLPPRYKDHPLTGD-WKGYRDCHIKP 64
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 27.3 bits (61), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 185 VIDVVFCIFDENQDGQLSNREFIAVM 210
ID +F D NQDGQLS EF+ ++
Sbjct: 52 AIDKIFEDLDTNQDGQLSFEEFLVLV 77
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 28.3 bits (63), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 174 RTVAHVELSDHVIDVV----------FCIFDENQDGQLSNREFIAVMK 211
+ V + +S + D V I D ++DGQLS EF ++K
Sbjct: 159 KVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 25.2 bits (56), Expect = 4.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F +FD++ DG +S E +++
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 25.8 bits (57), Expect = 4.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
E + +I+ F D++ DG++S EF+ M
Sbjct: 30 EEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 26.9 bits (60), Expect = 6.6
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 83 FIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142
F + DG I + ++L G+ P + + K F+E G D+ +F
Sbjct: 26 FQLFDRDSDGLIDRNELGKIL-RSLGFNPSEAE-----INKLFEEIDAGNETVDFPEFLT 79
Query: 143 FLNNI-------NDVDTALTFYHIAGAS-IDRITLKHVARTVAHVELSDHVIDVVFCIFD 194
++ ++ A + I L+ V LSD ++ + +D
Sbjct: 80 VMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVL-KSLGERLSDEEVEKLLKEYD 138
Query: 195 ENQDGQLSNREFIAVMK 211
E+ DG++ EF ++K
Sbjct: 139 EDGDGEIDYEEFKKLIK 155
>gnl|CDD|238549 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB.
Length = 264
Score = 27.2 bits (61), Expect = 7.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 116 RIIKHVKKTFKENKLGISKEDYLKFFHFLNN 146
RI+ + KLG+ E+ F L
Sbjct: 48 RILDKKNQILDLEKLGLKPENLEIFRKLLEK 78
>gnl|CDD|233881 TIGR02470, sucr_synth, sucrose synthase. This model represents
sucrose synthase, an enzyme that, despite its name,
generally uses rather produces sucrose. Sucrose plus UDP
(or ADP) becomes D-fructose plus UDP-glucose (or
ADP-glucose), which is then available for cell wall (or
starch) biosynthesis. The enzyme is homologous to
sucrose phosphate synthase, which catalyzes the
penultimate step in sucrose synthesis. Sucrose synthase
is found, so far, exclusively in plants and
cyanobacteria [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 784
Score = 27.4 bits (61), Expect = 9.3
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 60 EKLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYP-PKKKSRII 118
E+LTI ++LDF+ QL G +D N+ E DF A +P P I
Sbjct: 87 EELTISEYLDFKEQLV----------NGHANDPNVLELDFEPF---NASFPRPSDSKSIG 133
Query: 119 KHVK--KTFKENKLGISKEDYLKFFHFL 144
V+ +KL E +FL
Sbjct: 134 NGVQFLNRHLSSKLFQDPESMEPLLNFL 161
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor.
Length = 587
Score = 27.4 bits (60), Expect = 9.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 90 DDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKK-TFKEN 128
DG+ GDFT + A A P K R + H+K ++EN
Sbjct: 281 ADGS---GDFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN 317
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 27.0 bits (60), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 93 NITEGDFTELLLAYAGYPP 111
NI D+ E LLA++G P
Sbjct: 168 NINSDDWDESLLAWSGAPK 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.398
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,693,702
Number of extensions: 1227689
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 55
Length of query: 243
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 149
Effective length of database: 6,768,326
Effective search space: 1008480574
Effective search space used: 1008480574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)