RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy922
(243 letters)
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 41.1 bits (96), Expect = 9e-05
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 64 IEKFLDFQHQLQKEILSL--EFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHV 121
+E+ ++E+ S F++ P G IT+ F + + +P +HV
Sbjct: 21 LEELQLNTKFSEEELCSWYQSFLKDCP--TGRITQQQFQSIYAKF--FPDTDPKAYAQHV 76
Query: 122 KKTFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFY-----------------HIAGAS 163
++F N G + ++Y+ H + I A
Sbjct: 77 FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
IT + V + + ++ F +N D +L+ +EFI
Sbjct: 137 FKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
Score = 29.6 bits (66), Expect = 0.65
Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
++D++G+G + +E ++ I + + + + +FG+N D+
Sbjct: 115 LYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWK--YFGKNDDD 172
Query: 61 KLTIEKFLDF 70
KLT ++F++
Sbjct: 173 KLTEKEFIEG 182
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 39.8 bits (93), Expect = 3e-04
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
+D N DG ++ D+FE I S T + H + + L Y EN+DE
Sbjct: 21 FYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY-ADENEDE 79
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKG-------------PNDDGNITEGDFTELLLAY 106
++T E++L + K + E + + + D I + +++ + ++Y
Sbjct: 80 QVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY 138
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 38.7 bits (90), Expect = 5e-04
Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 18/155 (11%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
D+N DG + ++FE + T ++ D+ + L NKD+
Sbjct: 17 FLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGR-ADINKDD 75
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKG-------------PNDDGNITEGDFTELLLAYA 107
++ E++L + S+ + + DG + +F +
Sbjct: 76 VVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNF- 134
Query: 108 GYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFH 142
+ + K+ Y + ++
Sbjct: 135 QLQCADVPAVYNVIT---DGGKVTFDLNRYKELYY 166
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 37.5 bits (87), Expect = 0.002
Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 30/166 (18%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLEFIRK-----GPNDDGNITEGDFTELLLAYA 107
F + L++E+F + +F N DG I DF E ++A +
Sbjct: 34 FLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTI---DFREFIIALS 90
Query: 108 GYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDR 166
K + +K + + G ISK + L+ + + + D
Sbjct: 91 VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM--------PEDE 142
Query: 167 ITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
T + + +F D N+DG+LS EFI K+
Sbjct: 143 STP-------------EKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 26.7 bits (59), Expect = 6.3
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 43/190 (22%)
Query: 56 ENKDEKLTIEKFLDFQHQLQKEILSL--EFIRKGPNDDGNITEGDFTELLLAYAGYPPKK 113
+K ++ L+ + EI F+R P G+++ +F ++ + +P
Sbjct: 5 NSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCP--SGHLSMEEFKKIYGNF--FPYGD 60
Query: 114 KSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHV 172
S+ +HV +TF N G I +++ +
Sbjct: 61 ASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGK------------------------ 96
Query: 173 ARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIES 232
+ + F ++D + +G +S E + +++ K E
Sbjct: 97 ---------LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEK 147
Query: 233 IVLSDDEVFS 242
+++F
Sbjct: 148 RT---EKIFR 154
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 36.3 bits (84), Expect = 0.004
Identities = 12/143 (8%), Positives = 41/143 (28%), Gaps = 19/143 (13%)
Query: 89 NDDGNITEGDFTEL---LLAYAGYPPKKKSRIIKHVKKTFKENKL----GISKEDYLKFF 141
+ DG + + + ++ ++ V+ F + G+ +ED+++
Sbjct: 48 DSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEAN 107
Query: 142 HFLNNINDVDTALTFYHIAGASID------------RITLKHVARTVAHVELSDHVIDVV 189
+ + + + + + ++
Sbjct: 108 RVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTF 167
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F D ++ G+L E + + +
Sbjct: 168 FEKADTDKSGKLERTELVHLFRK 190
Score = 28.6 bits (64), Expect = 1.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F FD + DG++ E +
Sbjct: 41 RFDTFDLDSDGKMEMDEVLYWPDR 64
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 35.2 bits (81), Expect = 0.004
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 132 ISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFC 191
I+ E+ K +++ + IT L V+ ++
Sbjct: 27 ITVEERAKHDQQFHSLKPIS-------------GFITGDQARNFFFQSGLPQPVLAQIWA 73
Query: 192 IFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
+ D N DG++ EF MK L+G + P
Sbjct: 74 LADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPS 106
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 36.0 bits (83), Expect = 0.005
Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 61 KLTIEKFLDFQHQLQKEILSL--EFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRII 118
+ ++ + +KE+ F + P G++ + +F ++ + +P S
Sbjct: 10 QDQLQDLVRSTRFDKKELQQWYKGFFKDCP--SGHLNKSEFQKIYKQF--FPFGDPSAFA 65
Query: 119 KHVKKTFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFYHI----AGASIDRITLKHVA 173
++V F +K G I ++++ + D + + + I + +
Sbjct: 66 EYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
Query: 174 RTVAHV-----------ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ + + + ++ +F + D+N+DGQL+ EF K
Sbjct: 126 DAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 29.8 bits (67), Expect = 0.59
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 118 IKHVKKTFKE--NKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDR---ITLKHV 172
++ K F + ++K ++ K + D +A Y D+ I K
Sbjct: 27 LQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGD-PSAFAEYVFNVFDADKNGYIDFKEF 85
Query: 173 ARTVAHVE--LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFI 230
++ + + F ++D + +G +S E + ++ K
Sbjct: 86 ICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTP 145
Query: 231 ESIVLSDDEVFS 242
E V +++F+
Sbjct: 146 EKRV---NKIFN 154
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 36.0 bits (83), Expect = 0.005
Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 30/166 (18%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLEFIRK-----GPNDDGNITEGDFTELLLAYA 107
F + +L F Q +F N DG I +F + L +
Sbjct: 34 FIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTS 93
Query: 108 GYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDR 166
+K ++ K + + G I++ + ++ I + + ++
Sbjct: 94 RGTLDEK---LRWAFKLYDLDNDGYITRNE---MLDIVDAIYQMVGNTVELPEEENTPEK 147
Query: 167 ITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+D +F + D+N DG+L+ +EF K
Sbjct: 148 R------------------VDRIFAMMDKNADGKLTLQEFQEGSKA 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.007
Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 90/267 (33%)
Query: 28 IGTRHRDHANTGHIYRGVNSALTTYFFGENKDEKL--TIEKFL------DFQHQLQK--- 76
I RD T ++ VN +KL IE L +++ +
Sbjct: 333 IAESIRDGLATWDNWKHVNC------------DKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 77 ---------EILSLEFIRKGPNDDGNITEGDFTELLLA----------YAGY------PP 111
+LSL + +D + L+ + Y
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 112 KKKS---RIIKH--VKKTFKENKLGISKED-YLKFFHFLNNINDVDTALTFYHIAGAS-I 164
+ + I+ H + KTF + L D Y F+ + +H+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIG-----------HHLKNIEHP 487
Query: 165 DRIT--------LKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSN-REFIAVMKN--- 212
+R+T + + + + H + + + N QL + +I
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-----NTLQQLKFYKPYICDNDPKYE 542
Query: 213 RLLRGLEKPKDTGFVKFIESIVLSDDE 239
RL+ + F+ IE ++
Sbjct: 543 RLVNAILD-----FLPKIEENLICSKY 564
Score = 27.5 bits (60), Expect = 4.6
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 54 FGENKDEKLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKK 113
+ +E +Q+ S + + + LL P +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYE 244
Query: 114 KSRII-KHV--KKTFK 126
++ +V K +
Sbjct: 245 NCLLVLLNVQNAKAWN 260
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 34.4 bits (79), Expect = 0.008
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 132 ISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFC 191
+ ED K+ ++++ V+ ++ V + + +L ++ V+
Sbjct: 9 VKPEDKAKYDAIFDSLSPVN-------------GFLSGDKVKPVLLNSKLPVDILGRVWE 55
Query: 192 IFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
+ D + DG L EF M L P
Sbjct: 56 LSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPM 88
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 35.2 bits (81), Expect = 0.009
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 22/156 (14%)
Query: 75 QKEILSL--EFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG- 131
++EI F+R P G + DF ++ + +P H+ F ++ G
Sbjct: 24 RREIQQWHKGFLRDCP--SGQLAREDFVKIYKQF--FPFGSPEDFANHLFTVFDKDNNGF 79
Query: 132 ISKEDYLKFFHFLNNINDVDTALTFYHI----AGASIDRITLKHVARTVAHV-------- 179
I E+++ + + + + I + + +V +
Sbjct: 80 IHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLN 139
Query: 180 ---ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ + +F + D+N+DG ++ EF K
Sbjct: 140 EDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
Score = 26.4 bits (58), Expect = 8.8
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 35/155 (22%)
Query: 3 DLNGDGDVDSDEFEKVATLIRQQTSIGT-RHR-----DHANTGHIYRGVNSALTTYFFGE 56
G + ++F K+ S + D N G I+ + +
Sbjct: 36 RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRG 95
Query: 57 NKDEKLTIE-KFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLA------YAGY 109
+EKL+ + D N DG IT + ++ +
Sbjct: 96 TLEEKLSWAFELYDL------------------NHDGYITFDEMLTIVASVYKMMGSMVT 137
Query: 110 PPKKKSRIIKHVKKTFKE---NKLG-ISKEDYLKF 140
+ ++ VKK FK N+ G I+ +++ +
Sbjct: 138 LNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREG 172
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 35.2 bits (81), Expect = 0.009
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 18/154 (11%)
Query: 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-IS 133
++E+ L K G + E F ++ + +P S ++ F + G +
Sbjct: 17 KRELQVLYRGFKNEXPSGVVNEETFKQIYAQF--FPHGDASTYAHYLFNAFDTTQTGSVK 74
Query: 134 KEDYLKFF-HFLNNINDVDTALTFYHI---AGASIDRITLKHVARTV-------AHVELS 182
ED++ L TF I++ + + + + + L
Sbjct: 75 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 134
Query: 183 DH----VIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ +DV F D+N+DG ++ EF+ +
Sbjct: 135 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 32.8 bits (76), Expect = 0.011
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
+ + VA + + I F D + +G+L+ EF + ++ L
Sbjct: 17 KLSLDEFREVALAFSP-YFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML 67
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
VF FD+N+DG+LS EF V
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALA 29
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 1 MFDLNGDGDVDSDEFEKVAT 20
FD N DG + DEF +VA
Sbjct: 9 KFDKNKDGKLSLDEFREVAL 28
Score = 25.5 bits (57), Expect = 5.0
Identities = 6/14 (42%), Positives = 13/14 (92%)
Query: 2 FDLNGDGDVDSDEF 15
D++G+G++++DEF
Sbjct: 46 IDVDGNGELNADEF 59
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 34.8 bits (80), Expect = 0.015
Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 30/201 (14%)
Query: 29 GTRHRDHANTGHIYRGVNSALTTYFFGENKDEKLTIEKFLDFQHQLQKEILSL--EF--I 84
G +H + G + L G E L + EI +L F I
Sbjct: 7 GIKHLCTSVLG----CFDLDLYKQSGGLGDPELLARDTVFS-----VSEIEALYELFKKI 57
Query: 85 RKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHF 143
DDG I + +F L KK+S V F G + E++ +
Sbjct: 58 SSAVIDDGLINKEEFQLALF----KTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 113
Query: 144 LNNINDVDTALTF----YHIAG-ASIDRITLKHVARTV---AHVELSDH----VIDVVFC 191
+ +D + F Y + I+R +K + + + L D +ID F
Sbjct: 114 FHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFE 173
Query: 192 IFDENQDGQLSNREFIAVMKN 212
D DG++ E+ +++
Sbjct: 174 EADTKHDGKIDKEEWRSLVLR 194
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 33.9 bits (78), Expect = 0.015
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I +L+ + + +S + D + DG L+ EF +M
Sbjct: 57 ITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMV 104
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 35.1 bits (81), Expect = 0.018
Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 13/172 (7%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLE--FIRKGPNDDGNITEGDFTELLLAYAGYP 110
F G K + + ++ + Q E L F + N DG + + E
Sbjct: 310 FQGTQKLAQAAL-LYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMK 368
Query: 111 PKKKSRIIKHVKKTFKE---NKLGISKEDYLKFFHFL-------NNINDVDTALTFYHIA 160
+ S + + + + + K Y+++ F+ ++ F
Sbjct: 369 GQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFD 428
Query: 161 GASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ +I+ +A ++ V D+N DG++ EF ++
Sbjct: 429 SDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 480
Score = 27.0 bits (60), Expect = 6.4
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 166 RITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTG 225
+ L ++ + + + + + F D+N DGQL E I K + +
Sbjct: 318 QAALLYMGSKLTSQDETKELTAI-FHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLD 376
Query: 226 FVKFIESI 233
+
Sbjct: 377 ASAVEHEV 384
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 33.9 bits (78), Expect = 0.019
Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 15/130 (11%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
D + DG + +FE +A ++ + + + + +
Sbjct: 14 RIDFDKDGAITRMDFESMAERFAKE-----SEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKG---------PNDDGNITEGDFTELLLAYAGYPP 111
+ F++ ++ K + + N+D NI+ ++ G
Sbjct: 69 GIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML-GLDK 127
Query: 112 KKKSRIIKHV 121
+
Sbjct: 128 TMAPASFDAI 137
Score = 33.2 bits (76), Expect = 0.037
Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 15/138 (10%)
Query: 89 NDDGNITEGDFTEL---LLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLN 145
+ DG IT DF + + + ++ + + ++ + F+N
Sbjct: 18 DKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFIN 77
Query: 146 NINDVDTALTFYHIAGASID------------RITLKHVARTVAHVELSDHVIDVVFCIF 193
++ ++ + + I+ + L + F
Sbjct: 78 SMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAI 137
Query: 194 DENQDGQLSNREFIAVMK 211
D N DG LS EF+
Sbjct: 138 DTNNDGLLSLEEFVIAGS 155
Score = 29.3 bits (66), Expect = 0.68
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTG 225
F D ++DG ++ +F ++ + R + E +
Sbjct: 11 YFNRIDFDKDGAITRMDFESMAE-RFAKESEMKAEHA 46
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 32.5 bits (75), Expect = 0.021
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
ID K + + V L+D ++ DE+ +G + EF+ ++K
Sbjct: 25 IDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72
Score = 25.2 bits (56), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FD N DG + EF +M+
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQK 36
Score = 24.8 bits (55), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1 MFDLNGDGDVDSDEFEKVAT 20
+FD NGDG +D DEF+ +
Sbjct: 16 VFDANGDGVIDFDEFKFIMQ 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.024
Identities = 34/220 (15%), Positives = 57/220 (25%), Gaps = 73/220 (33%)
Query: 13 DEFEK-----------VATLIRQQTSIGTRHRD---------HANTGHIYRGVNSALTTY 52
EFE A L+++ + + ++ + NSAL
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--- 145
Query: 53 FFGENKDEKLTIEKFLDF--QHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYP 110
F + + F Q GN + F EL Y Y
Sbjct: 146 -FRAVGEGNAQL--VAIFGGQ--------------------GNTDDY-FEELRDLYQTYH 181
Query: 111 PKKKSRIIKHVKKTFKENKLGISKED----YLKFFHFLNNINDVDTALTFYHIAGA--SI 164
+IK +T E L + D + + + L + + ++ S
Sbjct: 182 VLVGD-LIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 165 DRITL---KHVART-----VAHVELSD-------HVIDVV 189
I + H T EL H +V
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 33.9 bits (78), Expect = 0.025
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 19/142 (13%)
Query: 89 NDDGNITEGDFTEL---LLAYAGYPPKKKSRIIKHVKKTFKENKLG----ISKEDYLKFF 141
DG I+ D+ + + A +K + + + L IS E+
Sbjct: 26 TGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNA 85
Query: 142 -HFLNNINDVDTALTFYHIAGA----------SIDRITLKHVARTVAHVELSDHVIDVVF 190
L + + A+ + K + V +L+D F
Sbjct: 86 TDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGP-DLTDDKAITCF 144
Query: 191 CIFDENQDGQLSNREFIAVMKN 212
D N++GQ+S EF+ + +
Sbjct: 145 NTLDFNKNGQISRDEFLVTVND 166
Score = 32.0 bits (73), Expect = 0.11
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
D+ GDG + +++E +A I + + + R + G
Sbjct: 22 RVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQE-FLRVADQ------LGLAPGV 74
Query: 61 KLTIEKFL-DFQHQLQKEILSLEFIRKGP----------NDDGNITEGDFTELL 103
++++E+ + L K + + + DG ++ +F L
Sbjct: 75 RISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFL 128
Score = 29.7 bits (67), Expect = 0.66
Identities = 4/36 (11%), Positives = 9/36 (25%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDT 224
D DG +S ++ + +
Sbjct: 19 RMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKA 54
Score = 26.6 bits (59), Expect = 5.7
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 1 MFDLNGDGDVDSDEFEKVAT 20
D + DG V EF+
Sbjct: 110 CIDTDKDGYVSLPEFKAFLQ 129
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 34.0 bits (78), Expect = 0.027
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 91 DGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNIND 149
G +T +F + ++ ++ + +TF NK G I +Y+ +
Sbjct: 29 SGQLTLYEFKQFFGLK--NLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKV 86
Query: 150 VD---TALTFYHIAG-ASIDRITLKHVARTVAHVELSDH------VIDVVFCIFDENQDG 199
Y + G IDR L ++ + + + + ++VF D N DG
Sbjct: 87 DQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDG 146
Query: 200 QLSNREFIAVMKN 212
+LS EF+ ++
Sbjct: 147 ELSLEEFMEGVQK 159
Score = 32.4 bits (74), Expect = 0.067
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRG 217
+ K ++ ++ +F FD N+DG + E++A + + +L+G
Sbjct: 31 QLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAAL-SLVLKG 84
Score = 27.8 bits (62), Expect = 2.6
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
++D++G+G +D E + IR T ++ ++ N D
Sbjct: 96 LYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDI---------NGDG 146
Query: 61 KLTIEKFLDF 70
+L++E+F++
Sbjct: 147 ELSLEEFMEG 156
Score = 27.4 bits (61), Expect = 3.5
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 182 SDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDT 224
D + F ++D + +G + E + ++K T
Sbjct: 86 VDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMT 128
Score = 26.7 bits (59), Expect = 6.7
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHA-------NTGHIYRG-VNSALTTY 52
FD N DG +D E+ VA L + G I RG + + +
Sbjct: 60 TFDFNKDGYIDFMEY--VAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAI 117
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLEFIRK-GPNDDGNITEGDFTELLL 104
+E +T E+F + K N DG ++ +F E +
Sbjct: 118 RAINRCNEAMTAEEFTN------------MVFDKIDINGDGELSLEEFMEGVQ 158
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 33.6 bits (77), Expect = 0.029
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 89 NDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNIN 148
+ +G + DF + I + K ++ K + F +L
Sbjct: 19 DGNGALERADFEKEA-----------QHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEA 67
Query: 149 DVD--TALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREF 206
V +LT + + I + A + V+ + + D+N DGQ++ EF
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLG---PVVKGIVGMCDKNADGQINADEF 124
Query: 207 IAVMKN 212
A +
Sbjct: 125 AAWLTA 130
Score = 30.9 bits (70), Expect = 0.22
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
+D +G+G ++ +FEK A I + + + + G+ L G D
Sbjct: 15 RWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE-AGVGSDG 73
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKG------------PNDDGNITEGDFTELLLAYAG 108
LT E+F+ L E F R N DG I +F L A G
Sbjct: 74 SLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL-G 132
Query: 109 YPPKKKSRIIKHV 121
+ + V
Sbjct: 133 MSKAEAAEAFNQV 145
Score = 28.2 bits (63), Expect = 1.6
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGL 218
F +D + +G L +F + +
Sbjct: 12 RFDRWDFDGNGALERADFEKEAQ-HIAEAF 40
Score = 26.3 bits (58), Expect = 8.2
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 194 DENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESI 233
DG L+ +FI V +N + E + ++ I
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGI 107
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 32.4 bits (74), Expect = 0.030
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVM---KNRLLRGLEKPK 222
L ++ ++ + D G+LS +F +L++G++ P
Sbjct: 41 LPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKGIDPPH 85
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 33.9 bits (77), Expect = 0.036
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-IS 133
+KE+ SL K G + E F + + +P + + F + G I
Sbjct: 90 KKELQSLYRGFKNECPTGLVDEDTFKLIYSQF--FPQGDATTYAHFLFNAFDADGNGAIH 147
Query: 134 KEDYLKFFHFLNNINDVDTALTFYHI----AGASIDRITLKHVARTVAHV---------- 179
ED++ L + +++ I + + + +++ +
Sbjct: 148 FEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILR 207
Query: 180 -ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ ++ F D NQDG ++ EF+ +
Sbjct: 208 EDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 33.6 bits (77), Expect = 0.036
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 14/145 (9%)
Query: 91 DGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNIND 149
G T +F LL +K ++ I V TF NK G + +++ + +
Sbjct: 34 SGLQTLHEFKTLLGLQ--GLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKM 91
Query: 150 VD---TALTFYHIAG-ASIDRITLKHVARTV-----AHVELSDHVIDVVFCIFDENQDGQ 200
Y G SID+ L + V + I++VF D N DG+
Sbjct: 92 EQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGE 151
Query: 201 LSNREFIAVMKN--RLLRGLEKPKD 223
L+ EFI M LL + K D
Sbjct: 152 LTLEEFINGMAKDQDLLEIVYKSFD 176
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 33.4 bits (76), Expect = 0.036
Identities = 25/165 (15%), Positives = 61/165 (36%), Gaps = 18/165 (10%)
Query: 64 IEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKK 123
+E+ + ++E+ L K G + E F ++ + +P S ++
Sbjct: 39 LEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQF--FPHGDASTYAHYLFN 96
Query: 124 TFKENKLG-ISKEDYLKFFHFLNNINDVDTALTFYHI----AGASIDRITLKHVARTV-- 176
F + G + ED++ L + +++ I++ + + + +
Sbjct: 97 AFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYD 156
Query: 177 -----AHVELSDH----VIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ L + +DV F D+N+DG ++ EF+ +
Sbjct: 157 MMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 32.9 bits (76), Expect = 0.039
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I + L+ + T + I ++ F + G + + V+ +
Sbjct: 112 IKKSFLEELLTTGGG-RFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159
Score = 26.8 bits (60), Expect = 5.4
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F + D + G + ++
Sbjct: 101 FKVLDPDGKGSIKKSFLEELLTT 123
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 33.2 bits (76), Expect = 0.045
Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 28/179 (15%)
Query: 57 NKDEKLTIEKFLDFQHQLQKEILSL--EFIRKGPNDDGNITEGDFTELLLAYAGYPPKKK 114
+ E+ ++ +F+ + P G + +F + ++
Sbjct: 3 QQFSWEEAEENGAVGAADAAQLQEWYKKFLEECP--SGTLFMHEFKRF---FKVPDNEEA 57
Query: 115 SRIIKHVKKTFKENKLG-ISKEDYLKFFHFLNNINDVD---TALTFYHIAGAS-IDRITL 169
++ ++ + + F N I +Y+ + + Y IDR L
Sbjct: 58 TQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQEL 117
Query: 170 KHVARTVAHVELSDHV----------------IDVVFCIFDENQDGQLSNREFIAVMKN 212
+ ++ ++ + V +D +F + DEN DGQLS EF+ +
Sbjct: 118 LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 31.7 bits (72), Expect = 0.14
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRG 217
++ K + + E + ++ +F FD N D + E++A + N +LRG
Sbjct: 39 TLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDTNGDNTIDFLEYVAAL-NLVLRG 91
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 33.2 bits (76), Expect = 0.046
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 32/168 (19%)
Query: 54 FGENKDEKLTIEKFLDF----QHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGY 109
+ ++ L+ E F + L I++ F + + +F + A +
Sbjct: 38 LDKGENGTLSREDFQRIPELAINPLGDRIINAFF----SEGEDQV---NFRGFMRTLAHF 90
Query: 110 PPKKKSRIIKHVKKTFKENKLGISKEDYLKF-FHFLNNINDVDTALTFYHIAGASIDRIT 168
P + + K V N S+ + L F F + D+D I R
Sbjct: 91 RPIEDNEKSKDVNGPEPLN----SRSNKLHFAF----RLYDLD--------KDDKISRDE 134
Query: 169 LKHVARTVAHVELSD----HVIDVVFCIFDENQDGQLSNREFIAVMKN 212
L V R + V +SD + D D++ D +S EF+ V++
Sbjct: 135 LLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
Score = 27.4 bits (61), Expect = 3.7
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYF--FGENK 58
F G+ V+ F + TL + N ++ L F + +K
Sbjct: 69 AFFSEGEDQVNFRGF--MRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDK 126
Query: 59 DEKLTIEKFLDFQHQLQKEILSLEFIRK---------GPNDDGNITEGDFTELL 103
D+K++ ++ L + +S E + + D I+ +F ++L
Sbjct: 127 DDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 32.5 bits (75), Expect = 0.047
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I L+ R + ++ I+ + D N DG++ EF+ +M
Sbjct: 105 ISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 190 FCIFDENQDGQLSNREFIAVMKNRL 214
F FD N DG++S E M+ L
Sbjct: 94 FREFDTNGDGEISTSELREAMRALL 118
Score = 26.7 bits (60), Expect = 4.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F FD+++DG ++ R+ M+
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMR 38
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 33.5 bits (77), Expect = 0.049
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 14/171 (8%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLE--FIRKGPNDDGNITEGDFTELLLAYAGYP 110
F K + + ++ + Q+E L F N DG + + + +G
Sbjct: 321 FQNSQKLAQAAL-LYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEE 379
Query: 111 PKKKSRIIKH--VKKTFKENKLGISKEDYLKFFHFL-------NNINDVDTALTFYHIAG 161
V + Y+ + F+ + ++ F
Sbjct: 380 VAVFDLPQIESEVDAIL--GAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQ 437
Query: 162 ASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+I++ +A L + D N DG + EF +++
Sbjct: 438 DGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 488
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 33.5 bits (77), Expect = 0.053
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 14/171 (8%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSL--EFIRKGPNDDGNITEGDFTELL--LAYAG 108
F G K + F+ + +E L F + N DG + + + E L
Sbjct: 330 FEGSQKLAQA-AILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFK 388
Query: 109 YPPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFL-------NNINDVDTALTFYHIAG 161
+ + + V KE + K Y+++ F+ ++ F
Sbjct: 389 NELGELKNVEEEVDNILKE--VDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDT 446
Query: 162 ASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+IT + +A +S+ + V D+N+D + EF+++M
Sbjct: 447 DKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHK 497
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 32.9 bits (75), Expect = 0.064
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%)
Query: 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG-IS 133
+KE+ L K G + E F E+ + +P + + F + G +S
Sbjct: 63 KKELQILYRGFKNECPSGVVNEETFKEIYSQF--FPQGDSTTYAHFLFNAFDTDHNGAVS 120
Query: 134 KEDYLKFFHFLNNINDVDTALTFYHI----AGASIDRITLKHVARTV-------AHVELS 182
ED++K L + +++ I + + + + + + L
Sbjct: 121 FEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLK 180
Query: 183 DH----VIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ ++ F D+N+DG ++ EFI +
Sbjct: 181 EDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 32.1 bits (74), Expect = 0.065
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I L+ + T+ +D +D ++ ++ G + EF ++K+
Sbjct: 93 IHEDHLRELLTTMGD-RFTDEEVDEMYREAPIDKKGNFNYVEFTRILKH 140
Score = 26.3 bits (59), Expect = 5.9
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F FDE G + ++
Sbjct: 82 FACFDEEASGFIHEDHLRELLTT 104
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 31.3 bits (71), Expect = 0.077
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 134 KEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIF 193
Y K++ + N R+ A + L D ++ ++ +
Sbjct: 10 NPVYEKYYRQVEAGNT---------------GRVLALDAAAFLKKSGLPDLILGKIWDLA 54
Query: 194 DENQDGQLSNREFIAVMK--NRLLRGLEKPKD 223
D + G LS +EF ++ GLE
Sbjct: 55 DTDGKGVLSKQEFFVALRLVACAQNGLEVSLS 86
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 32.4 bits (74), Expect = 0.078
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 75 QKEILSL--EFIR--KGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKL 130
+E+ +L F + DDG I + +F L +++ + F +
Sbjct: 33 VEEVEALYELFKKLSSSIIDDGLIHKEEFQLALF----RNRNRRNLFADRIFDVFDVKRN 88
Query: 131 G-ISKEDYLKFFHFLNNINDVDTALTF----YHIAG-ASIDRITLKHVARTVAHV----- 179
G I ++++ + V + F Y + I+R LK + + H
Sbjct: 89 GVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVL 148
Query: 180 --ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
++ + ++D F D DG++ E+ +
Sbjct: 149 SEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 32.9 bits (75), Expect = 0.083
Identities = 23/214 (10%), Positives = 60/214 (28%), Gaps = 21/214 (9%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
+D + D+ E + + + + R + + ++
Sbjct: 59 EYDQKVQNEFDARERAEREREAARGDAAAEKQR-------LASLLKD------LEDDASG 105
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKH 120
+ + IL F+ + G + F +L A Y +K
Sbjct: 106 YNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFS---FQDLKQVLAKYADTIPEGPLKK 162
Query: 121 VKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGA-SIDRITLKHVARTVAHV 179
+ + + G + Y+ N++ + ++ R + +
Sbjct: 163 LFVMVENDTKG--RMSYITLVAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLG-- 218
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
V D +F DE++ + E++ +
Sbjct: 219 FDKKSVQDALFRYADEDESDDVGFSEYVHLGLCL 252
Score = 31.7 bits (72), Expect = 0.18
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
+ + ++ V E + + F + D + LS +EF+ ++
Sbjct: 269 QLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMF 320
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 31.8 bits (73), Expect = 0.084
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 164 IDRITLKHVARTVAHVELSD----HVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I L V + + L D ++D D++ DG++S EF AV+
Sbjct: 92 ISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGG 144
Score = 26.0 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F I+D ++DG +SN E V+K
Sbjct: 81 FRIYDMDKDGYISNGELFQVLKM 103
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 30.8 bits (70), Expect = 0.087
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
L + ++ + D ++DG L+ EF A G + P+
Sbjct: 40 LPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPE 83
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 31.3 bits (71), Expect = 0.089
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 20/121 (16%)
Query: 110 PPKKKSR--IIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRI 167
P + I+ + K + I + F D +I R
Sbjct: 2 PHMATADRDILARLHKAVTSHYHAI-----TQEFENF----DTM--------KTNTISRE 44
Query: 168 TLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFV 227
+ + L+D D ++ N G+L +F++ + D+
Sbjct: 45 EFRAICNRR-VQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVA 103
Query: 228 K 228
+
Sbjct: 104 Q 104
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 31.3 bits (71), Expect = 0.10
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
L + ++ + D +QDG+L+ EFI M + + G P
Sbjct: 45 LPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPP 88
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 31.9 bits (73), Expect = 0.12
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
TLK T + S +D + +G + ++F ++
Sbjct: 142 CKEETLKRSLTTWGE-KFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGA 191
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 30.9 bits (70), Expect = 0.13
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 166 RITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
I+ +LS + ++ + D + DG L+ EF A G P+
Sbjct: 38 FISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPE 96
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 31.4 bits (72), Expect = 0.15
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I L+ VA+ + L+D + + FD + DG+++ EFIA+ +
Sbjct: 113 ISIKNLRRVAKELGE-TLTDEELRAMIEEFDLDGDGEINENEFIAICTD 160
Score = 26.0 bits (58), Expect = 9.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FD++ G++S + V K
Sbjct: 102 FQLFDDDHTGKISIKNLRRVAKE 124
Score = 26.0 bits (58), Expect = 9.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD N DG L E MK
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMK 50
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 31.4 bits (72), Expect = 0.16
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I ++ + L D ID + D++ DGQ+ EF A+M+ R
Sbjct: 99 ITLDEIQQACK---DFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKR 145
Score = 26.4 bits (59), Expect = 6.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F + D + G ++ E +K
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKR 38
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 32.0 bits (73), Expect = 0.18
Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 18/179 (10%)
Query: 53 FFGENKDEKLTIEKFLDFQHQLQKEILSLE--FIRKGPNDDGNITEGDFTELLLAYAGYP 110
F E K + + ++ + E L F + N+DG + + +
Sbjct: 306 FQAEKKLAQAAL-LYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLK 364
Query: 111 PKKKSRIIKHVKKTFKE------NKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGA-- 162
+ +I++ T ++ L + +++ F+ + D L+ + A
Sbjct: 365 GVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFK 424
Query: 163 SIDR-----ITLKHVARTVA--HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
D+ I+ K + + + + ++ + D N+DG++ EF+ +++N +
Sbjct: 425 MFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFV 483
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 31.0 bits (71), Expect = 0.19
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
ID LK + + +++ I+ + D+N DG++ EF+ MK
Sbjct: 112 IDLEELKIMLQATGE-TITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGV 160
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 30.7 bits (69), Expect = 0.20
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMK--NRLLRGLEKPK 222
L + V+ ++ + D ++DG L + EF L G E P
Sbjct: 81 LPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELPA 124
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 31.0 bits (71), Expect = 0.20
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
ID L + R +++ I+ + D+N DG++ EF+ +M+
Sbjct: 113 IDIEELGEILRATGE-HVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG 160
Score = 26.4 bits (59), Expect = 6.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 174 RTVAHVELSDHVIDV---VFCIFDENQDGQLSNREFIAVMK 211
+ A LS+ +I F +FD + G +S +E VM+
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR 47
Score = 26.0 bits (58), Expect = 9.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F IFD+N DG + E +++
Sbjct: 102 FRIFDKNADGFIDIEELGEILRA 124
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 29.6 bits (67), Expect = 0.22
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 166 RITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
R+ + + + + VF D ++DG ++ +EF L
Sbjct: 43 RLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLGSL 91
Score = 26.9 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
VF D N+ G+L EF A+
Sbjct: 32 VFAACDANRSGRLEREEFRALCTE 55
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 31.2 bits (70), Expect = 0.23
Identities = 27/224 (12%), Positives = 60/224 (26%), Gaps = 36/224 (16%)
Query: 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDEK 61
+D DG + +E + + + R + + + + +
Sbjct: 66 YDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKI-----WRKYDADSSGY 120
Query: 62 LTIEKFLDFQHQLQK-------EILSLEFIRK-----GPNDDGNITEGDFTELLLAYAGY 109
++ + +F L E+ N DG + D +L
Sbjct: 121 ISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL------ 174
Query: 110 PPKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITL 169
+ ++ + K D+ K F DV + G +D
Sbjct: 175 ----ALQENFLLQFKMDASSQVERKRDFEKIFAHY----DVSRTG---ALEGPEVDGFVK 223
Query: 170 KHVARTVAHVELS--DHVIDVVFCIFDENQDGQLSNREFIAVMK 211
+ + D + + D N+DG++ E +
Sbjct: 224 DMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
Score = 28.5 bits (63), Expect = 1.9
Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 54/213 (25%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
FD + +G ++ E + +
Sbjct: 19 HFDADDNGYIEGKELDDF------------------------------FRHMLKKLQPKD 48
Query: 61 KLTIEKFLDFQHQLQKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKH 120
K+T E+ ++I DG + + ++L +
Sbjct: 49 KITDERV--------QQIKKSFMSAYDATFDGRLQIEELANMIL----------PQEENF 90
Query: 121 VKKTFKENKLGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVE 180
+ +E L S E + + + + +A + L +
Sbjct: 91 LLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD------LFLQHKKKIPPN 144
Query: 181 LSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
D D + IFD+N+DG+L + ++ +
Sbjct: 145 KLDEYTDAMMKIFDKNKDGRLDLNDLARILALQ 177
Score = 26.6 bits (58), Expect = 7.2
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
++ FD + +G + +E +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFR 38
Score = 26.2 bits (57), Expect = 9.6
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDD 238
++ +D + G +S E +K+ L+ +K ++ ++++ D
Sbjct: 109 IWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFD 158
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 30.9 bits (70), Expect = 0.24
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 75 QKEILSL--EFIRKGPNDDGNITEG-DFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLG 131
++EIL F P + ++ P K + + + + F +
Sbjct: 16 KQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAK 75
Query: 132 --ISKEDYLKFFHFLNNINDVDTALTF----YHIAG-ASIDRITLKHVAR----TVAHVE 180
+S ED+L ++ D + + +++R L +
Sbjct: 76 DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTR 135
Query: 181 LSD----HVIDVVFCIFDENQDGQLSNREFIAVMKN 212
LS +ID + D ++DG ++ EF V+
Sbjct: 136 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 29.1 bits (66), Expect = 0.25
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 185 VIDVVFCIFDENQDGQLSNREFIAVMKN 212
+ + +F D N DG +S E A +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSK 28
Score = 27.9 bits (63), Expect = 0.53
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
++ ++ ++F D + +G++ EF +
Sbjct: 32 IKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIR 23
D +G+G++D +EF K I+
Sbjct: 44 SIDADGNGEIDQNEFAKFYGSIQ 66
Score = 25.2 bits (56), Expect = 6.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MFDLNGDGDVDSDEFEKV 18
D+NGDG V +E +
Sbjct: 8 EIDVNGDGAVSYEEVKAF 25
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 30.6 bits (70), Expect = 0.25
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I L+ VA+ + L++ + + D N D ++ EFI +MK
Sbjct: 118 ITIKDLRRVAKELGE-NLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164
Score = 26.0 bits (58), Expect = 9.7
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FD++ G ++ ++ V K
Sbjct: 107 FRLFDDDNSGTITIKDLRRVAKE 129
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 30.6 bits (70), Expect = 0.28
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
I L+HV + +L+D +D + D + DGQ++ EF+ +M +
Sbjct: 101 ISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKG 150
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.4 bits (71), Expect = 0.28
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I L+HV + +L+D +D + D + DGQ++ EF+ +M +
Sbjct: 402 ISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 450
Score = 27.2 bits (60), Expect = 5.6
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD++ DG ++ +E VM+
Sbjct: 317 AFSLFDKDGDGTITTKELGTVMR 339
Score = 26.8 bits (59), Expect = 8.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FD++ +G +S E VM N
Sbjct: 391 FRVFDKDGNGYISAAELRHVMTN 413
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 30.6 bits (70), Expect = 0.30
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I L+ + D I+ + D++ DG++ EF+A+M+
Sbjct: 116 ITPDELQQACE---EFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQ 160
Score = 28.3 bits (64), Expect = 1.4
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 169 LKHVARTVAHVELSD---HVIDVVFCIFDENQDGQLSNREFIAVMKN 212
K +A V LS+ + +F + D ++ GQ++ E A +K
Sbjct: 9 FKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR 55
Score = 25.9 bits (58), Expect = 9.4
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F FD++ G ++ E +
Sbjct: 105 FTYFDKDGSGYITPDELQQACEE 127
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 30.5 bits (69), Expect = 0.31
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
+I K + S + F + D ++ GQL E
Sbjct: 125 AITLDEWKAYTKAAGI-IQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173
Score = 29.8 bits (67), Expect = 0.54
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGL 218
+F D N +G++S E + + ++ L
Sbjct: 21 MFNFLDVNHNGKISLDEMVYKASDIVINNL 50
Score = 29.0 bits (65), Expect = 1.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
L D +F I D++Q+G ++ E+ A K
Sbjct: 105 TLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA 137
Score = 26.7 bits (59), Expect = 6.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 1 MFDLNGDGDVDSDEFEKVAT 20
D+N +G + DE A+
Sbjct: 24 FLDVNHNGKISLDEMVYKAS 43
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 30.2 bits (69), Expect = 0.32
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I ++ + + LS +D + D + G + EF+ VM
Sbjct: 108 ISTDVMREILAELDE-TLSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154
Score = 26.0 bits (58), Expect = 8.3
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F ++D+ +G +S ++
Sbjct: 97 FRLYDKEGNGYISTDVMREILAE 119
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 30.3 bits (69), Expect = 0.34
Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
+D ++ + + ++S+ + FD + G L +++ +
Sbjct: 109 RLDSNEVRAALLSSGY-QVSEQTFQALMRKFDRQRRGSLGFDDYVELS 155
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 2 FDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHI 41
FD G + D++ +++ + + ++ D TG +
Sbjct: 138 FDRQRRGSLGFDDYVELSIFVCRVRNV-FAFYDRERTGQV 176
Score = 26.1 bits (58), Expect = 7.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F D + DG+L + E A + +
Sbjct: 98 GFRKRDSSGDGRLDSNEVRAALLS 121
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 30.1 bits (69), Expect = 0.35
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I LK VA+ + L+D + + D + DG++S +EF+ +MK
Sbjct: 96 ISFKNLKRVAKELGE-NLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
Score = 26.3 bits (59), Expect = 6.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD + G + +E M+
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMR 33
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 29.1 bits (66), Expect = 0.39
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I L+HV + +L+D ++ + D + DGQ++ EF+ +M
Sbjct: 26 ISASELRHVMINLGE-KLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTV 74
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 30.1 bits (68), Expect = 0.41
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGENKDE 60
FD +G+G +D +F A + + + R + L + D+
Sbjct: 12 TFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG-IADRDGDQ 70
Query: 61 KLTIEKFLDFQHQLQKEILS------LEFIRKG-----PNDDGNITEGDFTELLLAY 106
++T E+F+ + ++ F+ + DG +T D L A+
Sbjct: 71 RITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAF 127
Score = 29.7 bits (67), Expect = 0.46
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKD 223
F FD++ +G + +F K L +
Sbjct: 9 RFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARS 43
Score = 29.7 bits (67), Expect = 0.47
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
E++ + + D + DG ++ + +
Sbjct: 94 EMARPFLHAALGVADTDGDGAVTVADTARALTA 126
Score = 29.3 bits (66), Expect = 0.73
Identities = 4/49 (8%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
++ + + + D + DG++ E +
Sbjct: 114 AVTVADTARALTAFG---VPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 30.2 bits (68), Expect = 0.43
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 21/177 (11%)
Query: 57 NKDEKLTIEKFLDFQHQL---QKEILSL--EFIRKGPNDDGNITE-GDFTELLLAYAGYP 110
+L+ E ++Q ++EIL F P + ++ P
Sbjct: 26 GSGSRLSKELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLP 85
Query: 111 PKKKSRIIKHVKKTFKENKLG--ISKEDYLKFFHFLNNINDVDTALTF----YHIAG-AS 163
K + + + + F + +S ED+L ++ D + + +
Sbjct: 86 ELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGT 145
Query: 164 IDRITLKHVAR----TVAHVELSD----HVIDVVFCIFDENQDGQLSNREFIAVMKN 212
++R L + LS +ID + D ++DG ++ EF V+
Sbjct: 146 LNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 29.1 bits (66), Expect = 0.55
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I+ LK + + L+D D++ DG + EF A++K
Sbjct: 58 IEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 29.9 bits (68), Expect = 0.57
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 164 IDRITLKHV-ARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I LK + R L D ID + D N DG++ EF+ +M +
Sbjct: 146 ISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSKK 196
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 169 LKHVARTVAHVELSD---HVIDVVFCIFDENQDGQLSNREFIAVMK 211
LK +A T+ L D + + +F D + G LS++E + +K
Sbjct: 39 LKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLK 84
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 29.4 bits (67), Expect = 0.57
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I L+HV + +L+D +D + D + DG ++ EF+ +M ++
Sbjct: 100 ISAAELRHVMTNLGE-KLTDDEVDEMIREADIDGDGHINYEEFVRMMVSK 148
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 29.5 bits (67), Expect = 0.61
Identities = 7/47 (14%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 169 LKHVARTVAHVELSDHVIDV---VFCIFDENQDGQLSNREFIAVMKN 212
+ +A T+ + +D+ ++ F + DE+ G ++ + ++
Sbjct: 34 FQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEK 80
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 164 IDRITLKHVAR----TVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I L H+ + + + + D+N DG++ EF +MK
Sbjct: 139 ITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 29.7 bits (67), Expect = 0.62
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 164 IDRITLKHVARTVAHVELSDH----VIDVVFCIFDENQDGQLSNREFIAVMKN 212
I R + V R + V++++ + D DE+ DG +S EF ++
Sbjct: 131 ISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
Score = 26.3 bits (58), Expect = 7.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F ++D ++DG++S E + V++
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRL 142
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 27.8 bits (63), Expect = 0.63
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I L+ + L +D + D +QDG+++ EF ++
Sbjct: 23 ITVDELRRAMAGLGQ-PLPQEELDAMIREADVDQDGRVNYEEFARMLA 69
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 28.7 bits (65), Expect = 0.71
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I+ LK V ++ A +L+D D++ DG++ EF ++
Sbjct: 59 IEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHE 109
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 29.0 bits (66), Expect = 0.75
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F D N DG +S E A +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSK 28
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 28.0 bits (63), Expect = 0.83
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
I L+HV + +L+D +D + D + DGQ++ EF+ +M +
Sbjct: 46 ISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 94
Score = 26.1 bits (58), Expect = 4.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F + D++ +G +S E VM N
Sbjct: 34 AFRVEDKDGNGYISAAELRHVMTN 57
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 28.0 bits (63), Expect = 0.88
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 164 IDRITLKHV-----ARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLLR 216
+ + L+ A + + + D+N DG++S EF+ L +
Sbjct: 24 VTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQ 81
Score = 27.2 bits (61), Expect = 1.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F D N DG ++ E M
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVT 35
Score = 24.9 bits (55), Expect = 9.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 2 FDLNGDGDVDSDEFEKV 18
D N DG + +EF
Sbjct: 58 ADKNSDGKISKEEFLNA 74
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 28.2 bits (63), Expect = 0.91
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 161 GASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
++ R LK + T + + DV F D N DG ++ +EF+ ++
Sbjct: 26 FHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV 75
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 29.2 bits (66), Expect = 0.95
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I L + E+ D V D+N DG++ EF+ +M+
Sbjct: 140 ITNEELGRLFGVT---EVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
Score = 27.3 bits (61), Expect = 3.3
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGLEKPKDTGF 226
+F D N DGQL +E I + + + D
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDS 82
Score = 26.1 bits (58), Expect = 9.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F FD + G+++N E +
Sbjct: 129 FQQFDSDGSGKITNEELGRLFGV 151
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 29.2 bits (66), Expect = 1.0
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F D + L EF +
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAK 65
Score = 28.1 bits (63), Expect = 2.2
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 178 HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRL 214
+ L + V +D N G L EF+ ++ +
Sbjct: 67 GLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPM 103
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 163 SIDRITLKHVARTVAHVE------LSDHVIDVVFCIFDEN-QDGQLSNREFIAVMKN 212
+ L+ V AH + D V+ FD + +DGQ++ EF
Sbjct: 125 VVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSG 181
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 28.9 bits (65), Expect = 1.1
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKNRLLRGL 218
+F D N +G+++ E ++ + + L
Sbjct: 25 MFDFLDINGNGKITLDEIVSKASDDICAKL 54
Score = 28.9 bits (65), Expect = 1.1
Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I K + S + F D + G L E
Sbjct: 130 ITLDEWKAYGKISGI-SPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 177
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 27.2 bits (61), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 163 SIDRITLKHVARTVAHVELSDHV-IDVVFCIFDENQDGQLSNREFIAVMKN 212
I + LK V +T+ L +D + D+N DG++S EF+ +MK
Sbjct: 23 QISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73
Score = 24.9 bits (55), Expect = 7.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 2 FDLNGDGDVDSDEF 15
D NGDG+V +EF
Sbjct: 54 VDKNGDGEVSFEEF 67
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I+ LK+ + L+ D + DG++ EF ++++
Sbjct: 58 IEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQS 108
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/50 (14%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
+ L+++ + +L+D +D + + + +G++ ++FI + +
Sbjct: 100 VSVGDLRYMLTGLGE-KLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ 148
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I+ LK + + L+D D + DG + E+ A++K
Sbjct: 59 IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 28.7 bits (64), Expect = 1.4
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 20/153 (13%)
Query: 75 QKEILSLEFIRKGPNDDGNITEGDFTELLLAYAGYPPKKKSRIIKHVKKTFKENKLGISK 134
K+ F + N+ G + + L SR+ K+ F +++ SK
Sbjct: 46 AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFT-SRVRDITKRAFDKSRTLGSK 104
Query: 135 ------EDYLKFFHFLNNINDVDTALTFYHIAGA--SIDR-----IT---LKHVARTVAH 178
ED+++F F + + F+ + ID + K +
Sbjct: 105 LENKGSEDFVEFLEFRLMLCYIYD---FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEA 161
Query: 179 VELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
+F D+N G ++ EF A
Sbjct: 162 WGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 28.7 bits (64), Expect = 1.6
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 156 FYHIAGASIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLL 215
H+ + + L + + E + +D + G + E +K+ L
Sbjct: 80 LAHVLPTEENFLLLFRCQQLKSCEEFMK-----TWRKYDTDHSGFIETEELKNFLKDLLE 134
Query: 216 RGLEKPKDTGFVKFIESIV 234
+ + DT ++ + ++
Sbjct: 135 KANKTVDDTKLAEYTDLML 153
Score = 27.5 bits (61), Expect = 4.2
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
F ++D++ +G + E A++K+
Sbjct: 196 AFELYDQDGNGYIDENELDALLKD 219
Score = 26.4 bits (58), Expect = 8.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
++ FD + G L +E +++
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQ 43
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 28.4 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F D N +G LS+RE V+ +
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLAS 67
Score = 28.0 bits (63), Expect = 2.0
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 172 VARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNRLL 215
+A + + F D+++DG +S + ++++ +++L
Sbjct: 96 MAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVL 139
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 26.8 bits (60), Expect = 1.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 190 FCIFDENQDGQLSNREFIAVMK 211
F +FD++ D +L+ E VM+
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMR 41
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 27.2 bits (60), Expect = 1.8
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 1 MFDLNGDGDVDSDEFEKVATLIRQQTSIGTRHRDHANTGHIYRGVNSALTTYFFGE---N 57
+ D+N DG +D E E + T ++ ++ + + + N
Sbjct: 28 LHDINSDGVLDEQELEALFTKELEKVY---DPKNEEDDMREMEEERLRMREHVMKNVDTN 84
Query: 58 KDEKLTIEKFLDF 70
+D +T+E+FL
Sbjct: 85 QDRLVTLEEFLAS 97
Score = 26.8 bits (59), Expect = 2.8
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 178 HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
E + + V D NQD ++ EF+A +
Sbjct: 66 MEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR 100
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 26.8 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F FD N DG++S+ E +K
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKT 39
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 28.0 bits (63), Expect = 2.0
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
ID+ LK LSD D++ FD GQ++ +FI
Sbjct: 90 MIDKNELKQALSG-FGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGC 136
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 27.3 bits (61), Expect = 2.1
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I+ L + + + +LS + D++ DG++ EF ++
Sbjct: 58 IEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107
Score = 25.7 bits (57), Expect = 6.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
VF I D+++ G + E +++K
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKG 69
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 27.2 bits (61), Expect = 2.2
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 163 SIDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
+D LK+ + EL++ + D + DG++ EF ++
Sbjct: 57 YLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 164 IDRITLKHVARTVAHV--ELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I+ LK V + + +L+D + D + DG++ EF ++
Sbjct: 58 IEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 26.4 bits (59), Expect = 2.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F FD N DG++S E ++
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRT 31
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 26.8 bits (60), Expect = 2.6
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 164 IDRITLKHVARTVA--HVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I+ L+ + + L+ D + DG++ EF +++K
Sbjct: 59 IEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 27.6 bits (62), Expect = 2.7
Identities = 19/133 (14%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 89 NDDGNITEGDFTELLLAYAGYPPKKK--SRIIKHVKKTFKENKLGISKEDYLKFFHFLNN 146
DG I +++ A G P +++ + K +++ + E +L +
Sbjct: 22 VGDGKILYSQCGDVMRA-LGQNPTNAEVLKVLGNPKSDELKSRR-VDFETFLPMLQAVAK 79
Query: 147 INDVDT------ALTFYHIAGA-SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDG 199
T + G + L+HV T+ ++++ ++ V E+ +G
Sbjct: 80 NRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGE-KMTEEEVETVLA-GHEDSNG 137
Query: 200 QLSNREFIAVMKN 212
++ F+ + +
Sbjct: 138 CINYEAFLKHILS 150
Score = 26.0 bits (58), Expect = 8.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD DG++ + VM+
Sbjct: 15 AFELFDRVGDGKILYSQCGDVMR 37
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.2 bits (62), Expect = 3.0
Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 17/176 (9%)
Query: 77 EILSLEFIRKGPNDDGNITEGDFTELLLAYA-----GYPPKKKSR--IIKHVKKTFKENK 129
E L+ I + ++ Y K R I++
Sbjct: 170 EGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN-- 227
Query: 130 LGISKEDYLKFFHFLNNINDVDTALTFYHIAGASIDRITLKHVARTVAHVELSDHVIDVV 189
+ DYL + N+ND AL + D +A + + +V
Sbjct: 228 --MPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILV 285
Query: 190 FCIFDENQDGQ----LSNREFIAVMKNRLLRGLEKPKDTGFVKFIESIVLSDDEVF 241
+ + D LS LL K D G + +S + +F
Sbjct: 286 TELTAQGYDPALLNILSGLPTCDYYNTFLLN--NKNIDIGLLNKSKSSLDGKFSLF 339
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 26.3 bits (59), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 190 FCIFDENQDGQLSNREFIAVMK 211
F +FD N+ G + E M+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMR 34
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 27.1 bits (61), Expect = 3.1
Identities = 6/49 (12%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
I L+ + + L+ ++ + + DG ++ F+ ++
Sbjct: 93 IQEAELRQLLLNLGD-ALTSSEVEELMKEVSVSGDGAINYESFVDMLVT 140
Score = 26.7 bits (60), Expect = 4.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F IFD++ DG++S E + ++
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALR 32
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 26.2 bits (58), Expect = 3.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 184 HVIDVVFCIFDENQDGQLSNREFIAVM 210
+D +F D+N DG++S EF ++
Sbjct: 47 RTLDDLFQELDKNGDGEVSFEEFQVLV 73
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 27.1 bits (61), Expect = 3.6
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I + L+ + L H I + GQ+ FI M
Sbjct: 96 IPKAALQDALLNLGD-RLKPHEFAEFLGITETE-KGQIRYDNFINTMF 141
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 26.3 bits (58), Expect = 3.7
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+D + D+ +DG++ + F +++
Sbjct: 48 PLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 26.9 bits (59), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 185 VIDVVFCIFDENQDGQLSNREFIAVMK 211
+ID V D+N DG + EF ++
Sbjct: 117 IIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 26.3 bits (58), Expect = 4.1
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ + D N+D ++ +E+ +
Sbjct: 52 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 26.0 bits (58), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 190 FCIFDENQDGQLSNREFIAVMK 211
F +FD + G +S +E VM+
Sbjct: 26 FDMFDADGGGDISTKELGTVMR 47
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.4 bits (58), Expect = 4.4
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 180 ELSDHVIDVVFCIFDENQDGQLSNREFIAVM 210
E + + + D N+D ++ E++ +
Sbjct: 49 EFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 27.4 bits (61), Expect = 4.5
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 111 PKKKSRIIKHVKKTFKENKLGISKEDYLKFFHFLNNINDVDTAL 154
+ I K + K ++ + + L F + +
Sbjct: 28 LENAQAIKKKLGKLGRQV---LPPSELLDHLFFHYEFQNQRFSA 68
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 26.8 bits (60), Expect = 4.7
Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 175 TVAHVELSDHVIDV---VFCIFDENQDGQLSNREFIAVMK 211
+VA ++ + +D +++ G++S +
Sbjct: 3 SVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNAR 42
Score = 25.6 bits (57), Expect = 9.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F FD N G L+ + ++
Sbjct: 90 FAHFDNNCTGYLTKSQMKNILTT 112
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 26.4 bits (58), Expect = 4.9
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ + D N+D ++ +E+ +
Sbjct: 64 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 25.9 bits (57), Expect = 5.0
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
D I + D N+D +++ +E++ +
Sbjct: 50 DAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 25.9 bits (57), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
VID +F D NQD Q+ +EFI+++
Sbjct: 54 KAVIDEIFQGLDANQDEQVDFQEFISLV 81
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 26.4 bits (58), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ VI+ + D N D QLS EFI +M
Sbjct: 55 EKVIEHIMEDLDTNADKQLSFEEFIMLM 82
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 26.7 bits (60), Expect = 5.3
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKN 212
++ +K + + + + + F G+ +F A++K
Sbjct: 104 LNIEYIKDLLENMGD-NFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKG 150
Score = 26.7 bits (60), Expect = 5.5
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FDE + +L+ +++N
Sbjct: 93 FAMFDEQETKKLNIEYIKDLLEN 115
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 25.9 bits (57), Expect = 5.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
D + D N DG++S E+ ++
Sbjct: 54 RKAADKLIQNLDANHDGRISFDEYWTLI 81
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB,
DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A
{Staphylococcus aureus}
Length = 70
Score = 25.5 bits (55), Expect = 5.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 120 HVKKTFKENKLGISKEDYLKFFHFLNNI 147
H+ K ++ L I KEDY + F FL N+
Sbjct: 19 HMDKKETKHLLKIKKEDYPQIFDFLENV 46
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 25.9 bits (57), Expect = 5.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 184 HVIDVVFCIFDENQDGQLSNREFIAVM 210
+D D NQD +L E+ ++
Sbjct: 62 GSLDEKMKSLDVNQDSELKFNEYWRLI 88
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 25.9 bits (57), Expect = 5.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+D + DEN DG++ +EF+ ++
Sbjct: 51 ADAVDKIMKELDENGDGEVDFQEFVVLV 78
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 26.3 bits (59), Expect = 6.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FDE+ G + +++N
Sbjct: 91 FSMFDEDGQGFIPEDYLKDLLEN 113
Score = 26.3 bits (59), Expect = 7.0
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 164 IDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMK 211
I LK + + S I V+ + Q + + + +
Sbjct: 102 IPEDYLKDLLENMGD-NFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKG 147
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 25.8 bits (57), Expect = 6.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
+ FD N +G + +++
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEK 60
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 26.8 bits (58), Expect = 6.5
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 163 SIDRITLKHVARTVAHVELSDHVIDVVFCIFDENQDGQLSNREF 206
+ L + + +E H F D + D ++ E+
Sbjct: 172 YLSHTELAPLRAPLIPME---HCTTRFFETCDLDNDKYIALDEW 212
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 25.6 bits (56), Expect = 6.8
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ + + DEN D Q+ +E+ +
Sbjct: 53 EEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 25.6 bits (56), Expect = 7.0
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ + D N+D ++ +E+ +
Sbjct: 55 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 25.5 bits (56), Expect = 7.4
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+ ID + D+N D ++ +E+ +
Sbjct: 49 ESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine
encephalitis virus alphavirus; HET: BCN; 2.30A
{Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Length = 168
Score = 26.4 bits (59), Expect = 7.5
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 172 VARTVAHV--ELSDHVIDVVFCIFDE 195
+ +++ H+ L DV D+
Sbjct: 123 LTQSLNHLLTALDTTDADVAIYCRDK 148
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 25.9 bits (58), Expect = 8.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 190 FCIFDENQDGQLSNREFIAVMKN 212
F +FD++ G + E V+ +
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTS 104
Score = 25.9 bits (58), Expect = 9.0
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD + G++ +++
Sbjct: 10 AFSLFDRHGTGRIPKTSIGDLLR 32
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 25.2 bits (56), Expect = 8.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 189 VFCIFDENQDGQLSNREFIAVMKN 212
+F + D + G ++ E +K
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKR 51
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 25.5 bits (56), Expect = 8.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 185 VIDVVFCIFDENQDGQLSNREFIAVM 210
+ VF D+N+D ++ EF++++
Sbjct: 53 YLADVFEKKDKNEDKKIDFSEFLSLL 78
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 25.6 bits (56), Expect = 8.2
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+++ + D N+D ++ EF+ ++
Sbjct: 52 PMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.2 bits (55), Expect = 9.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 183 DHVIDVVFCIFDENQDGQLSNREFIAVM 210
+D + D N D Q+ EFI +
Sbjct: 51 KDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 26.0 bits (57), Expect = 9.2
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 163 SIDRITLKHVAR----TVAHVELSDHVIDVVFCIFDENQDGQLSNREFIAVMKNR 213
ID ++LK + H+EL + +V + S +F+ +M +
Sbjct: 64 DIDIMSLKRMLEKLGVPKTHLELKRLIREV-----SSGSEETFSYSDFLRMMLGK 113
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 26.0 bits (58), Expect = 9.5
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 189 VFCIFDENQDGQLSNREFIAVMK 211
F +FD D +++ + + +
Sbjct: 13 AFLLFDRTGDAKITASQVGDIAR 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.398
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,788,951
Number of extensions: 227457
Number of successful extensions: 1318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 457
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)