BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9220
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)
Query: 14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
+F+W+D L + LT +E L+RD+ +++C L P+I+ R+E R I +E G LG+
Sbjct: 1 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 59
Query: 74 LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I YGS++Q+ KYL
Sbjct: 60 LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 119
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
P+LAKG L+GCFGLT EPN+GSD ++M+TRA Y+ S+ SY +
Sbjct: 120 PQLAKGELLGCFGLT-------------------EPNSGSDPSSMETRAHYNSSNKSYTL 160
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
G+KTWI+++P+A DL ++WA+CED
Sbjct: 161 NGTKTWITNSPMA------------------------------------DLFVVWARCED 184
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
IRGF++EK G I+GKF LRAS TG I +D V V ++ +L A+S
Sbjct: 185 GC-------IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
PF LN+ARYGIAWGVLGA+EFC AR Y LDR+QF PLA NQ+ Q KLA+MLT+I
Sbjct: 238 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 297
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
+L L +C Q+GRLK+ + PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 298 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 357
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 358 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)
Query: 14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
+F+W+D L + LT +E L+RD+ +++C L P+I+ R+E R I +E G LG+
Sbjct: 3 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 61
Query: 74 LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I YGS++Q+ KYL
Sbjct: 62 LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 121
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
P+LAKG L+GCFGLT EPN+GSD ++M+TRA Y+ S+ SY +
Sbjct: 122 PQLAKGELLGCFGLT-------------------EPNSGSDPSSMETRAHYNSSNKSYTL 162
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
G+KTWI+++P+A DL ++WA+CED
Sbjct: 163 NGTKTWITNSPMA------------------------------------DLFVVWARCED 186
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
IRGF++EK G I+GKF LRAS TG I +D V V ++ +L A+S
Sbjct: 187 GC-------IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
PF LN+ARYGIAWGVLGA+EFC AR Y LDR+QF PLA NQ+ Q KLA+MLT+I
Sbjct: 240 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 299
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
+L L +C Q+GRLK+ + PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 300 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 359
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 360 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 390
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)
Query: 14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
+F+W+D L + LT +E L+RD+ +++C L P+I+ R+E R I +E G LG+
Sbjct: 3 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 61
Query: 74 LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I YGS++Q+ KYL
Sbjct: 62 LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 121
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
P+LAKG L+GCFGLT EPN+GSD ++M+TRA Y+ S+ SY +
Sbjct: 122 PQLAKGELLGCFGLT-------------------EPNSGSDPSSMETRAHYNSSNKSYTL 162
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
G+KTWI+++P+A DL ++WA+CED
Sbjct: 163 NGTKTWITNSPMA------------------------------------DLFVVWARCED 186
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
IRGF++EK G I+GKF LRAS TG I +D V V ++ +L A+S
Sbjct: 187 GC-------IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 239
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
PF LN+ARYGIAWGVLGA+EFC AR Y LDR+QF PLA NQ+ Q KLA+MLT+I
Sbjct: 240 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 299
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
+L L +C Q+GRLK+ + PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 300 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 359
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTY+GT DIHALILGRAITGIQAF
Sbjct: 360 AMNLEAVNTYDGTHDIHALILGRAITGIQAF 390
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 283/454 (62%), Gaps = 63/454 (13%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
+ F+W+D L + L +E+++RD+ ++ L P++ E FRHET+D AI+ E G +
Sbjct: 4 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDA-AIFREMGEI 62
Query: 72 GILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKA 130
G+LG T+ YG G ++S GL+ARE+ERVDSGYRSM SVQSSLVM I ++GSD QK
Sbjct: 63 GLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKE 122
Query: 131 KYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNS 190
KYLP+LA G IGCFGLT EPN GSD +M TRA+ P
Sbjct: 123 KYLPKLATGEWIGCFGLT-------------------EPNHGSDPGSMVTRARKVP--GG 161
Query: 191 YIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAK 250
Y ++GSK WI+++P+A D+ ++WAK
Sbjct: 162 YSLSGSKMWITNSPIA------------------------------------DVFVVWAK 185
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA 310
++ +IRGFI+EK G I GK GLRAS+TG I LD V ++ +L
Sbjct: 186 LDE----DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 241
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANML 370
+ PFT LNSARYGIAWG LGAAE C+ +AR Y+LDR QF +PLAANQ+ Q KLA+M
Sbjct: 242 KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQ 301
Query: 371 TDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHV 430
T+I+L L ++GR+K+ E+ SI+KRN+C KALDIAR ARDMLGGNGISDE+ V
Sbjct: 302 TEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGV 361
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
RH+ NLEVVNTYEGT DIHALILGRA TGIQAF
Sbjct: 362 ARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 395
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 283/454 (62%), Gaps = 63/454 (13%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
+ F+W+D L + L +E+++RD+ ++ L P++ E FRHET+D AI+ E G +
Sbjct: 7 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDA-AIFREMGEI 65
Query: 72 GILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKA 130
G+LG T+ YG G ++S GL+ARE+ERVDSGYRSM SVQSSLVM I ++GSD QK
Sbjct: 66 GLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKE 125
Query: 131 KYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNS 190
KYLP+LA G IGCFGLT EPN GSD +M TRA+ P
Sbjct: 126 KYLPKLATGEWIGCFGLT-------------------EPNHGSDPGSMVTRARKVP--GG 164
Query: 191 YIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAK 250
Y ++GSK WI+++P+A D+ ++WAK
Sbjct: 165 YSLSGSKMWITNSPIA------------------------------------DVFVVWAK 188
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA 310
++ +IRGFI+EK G I GK GLRAS+TG I LD V ++ +L
Sbjct: 189 LDE----DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 244
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANML 370
+ PFT LNSARYGIAWG LGAAE C+ +AR Y+LDR QF +PLAANQ+ Q KLA+M
Sbjct: 245 KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQ 304
Query: 371 TDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHV 430
T+I+L L ++GR+K+ E+ SI+KRN+C KALDIAR ARDMLGGNGISDE+ V
Sbjct: 305 TEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGV 364
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
RH+ NLEVVNTYEGT DIHALILGRA TGIQAF
Sbjct: 365 ARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 398
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 283/454 (62%), Gaps = 63/454 (13%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
+ F+W+D L + L +E+++RD+ ++ L P++ E FRHET+D AI+ E G +
Sbjct: 3 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDA-AIFREMGEI 61
Query: 72 GILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKA 130
G+LG T+ YG G ++S GL+ARE+ERVDSGYRSM SVQSSLVM I ++GSD QK
Sbjct: 62 GLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKE 121
Query: 131 KYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNS 190
KYLP+LA G IGCFGLT EPN GSD +M TRA+ P
Sbjct: 122 KYLPKLATGEWIGCFGLT-------------------EPNHGSDPGSMVTRARKVP--GG 160
Query: 191 YIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAK 250
Y ++GSK WI+++P+A D+ ++WAK
Sbjct: 161 YSLSGSKMWITNSPIA------------------------------------DVFVVWAK 184
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA 310
++ +IRGFI+EK G I GK GLRAS+TG I LD V ++ +L
Sbjct: 185 LDE----DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 240
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANML 370
+ PFT LNSARYGIAWG LGAAE C+ +AR Y+LDR QF +PLAANQ+ Q KLA+M
Sbjct: 241 KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQ 300
Query: 371 TDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHV 430
T+I+L L ++GR+K+ E+ SI+KRN+C KALDIAR ARDMLGGNGISDE+ V
Sbjct: 301 TEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGV 360
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
RH+ NLEVVNTYEGT DIHALILGRA TGIQAF
Sbjct: 361 ARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 394
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 65/453 (14%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
S + +D + I+++L+ EE+ +RD+V+S + P I + R + E G L
Sbjct: 15 SQRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGEL 74
Query: 72 GILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAK 131
G+LG L+GYGCAG S ++ GL E+E DSG RS+ SVQ SL M AI +GSD+QK +
Sbjct: 75 GLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQ 134
Query: 132 YLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSY 191
+LP++A G+ IGCFGLT EP+ GSD A M+TRA S + +
Sbjct: 135 WLPDMASGHRIGCFGLT-------------------EPDHGSDPAGMRTRATR--SGDDW 173
Query: 192 IITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKC 251
I+TG+K WI++ +AD+ ++ WA+
Sbjct: 174 ILTGTKMWITNGSVADVAVV------------------------------------WART 197
Query: 252 EDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN 311
++ IRGF++ DTPG+ + IK K LRASVT + LD VR+ L A
Sbjct: 198 DEG--------IRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGAT 249
Query: 312 SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT 371
S AP LN AR+GI +G LGAA C A +Y R QF++P+ Q+ Q KLA+M
Sbjct: 250 SLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTL 309
Query: 372 DISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431
+ + +GR K++ PE +S+ K NN +A++IAR AR +LG +GI+ EY V+
Sbjct: 310 EYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVM 369
Query: 432 RHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
RH NNLE V TYEGTS++H LI+G+A+TG+ AF
Sbjct: 370 RHANNLESVLTYEGTSEMHTLIIGQALTGVGAF 402
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 174/439 (39%), Positives = 241/439 (54%), Gaps = 66/439 (15%)
Query: 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAG 85
LL Q+E+ + +V+ F D L P VE + + + EFG LG+LG L+GYGCAG
Sbjct: 25 LLDQDERDIAATVRQFVDTRLKPN-VEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAG 83
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+ +S GL E+E DSG+RS SVQ SL M +I +YGS++QK ++LP LA G+ IGCF
Sbjct: 84 TNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCF 143
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
GLT EP+ GS+ A M+TRA+ D S +I+ G+K WI++ L
Sbjct: 144 GLT-------------------EPDFGSNPAGMRTRARRDGSD--WILNGTKMWITNGNL 182
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD+ + WA+ +D IRG
Sbjct: 183 ADVATV------------------------------------WAQTDDG--------IRG 198
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARY 325
F++ DTPG+ + I K LRASVT + LDNVR+ L LA AP + LN AR+
Sbjct: 199 FLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCLNEARF 258
Query: 326 GIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGR 385
GI +G LGAA +Y R F+KPL+ Q+ Q KLANM ++ ++ +GR
Sbjct: 259 GIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGR 318
Query: 386 LKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEG 445
+K++ PE IS+ K NN +A+ IAR R +LGG+GI+ EY +RH NNLE V TYEG
Sbjct: 319 IKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEG 378
Query: 446 TSDIHALILGRAITGIQAF 464
TS++H L +G+A+TG AF
Sbjct: 379 TSEMHLLSIGKALTGKAAF 397
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/448 (39%), Positives = 242/448 (54%), Gaps = 67/448 (14%)
Query: 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL 78
D + LLT EEK ++ + + F + P I D+ E + F LG LG TL
Sbjct: 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHI-RDWWEEGVFPTHLIPRFAELGFLGPTL 61
Query: 79 R-GYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELA 137
YG AG S + GL+ E+ERVDSG RS SVQSSLVM I YGS++QK ++LP+LA
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 138 KGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSD-VANMQTRAKYDPSSNSYIITGS 196
+G ++GCFGLT EP+ GSD NM+TRA+ + +++++ G+
Sbjct: 122 RGEMVGCFGLT-------------------EPDGGSDPYGNMKTRARRE--GDTWVLNGT 160
Query: 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATH 256
K WI++ LA L ++ WAK E
Sbjct: 161 KMWITNGNLAHLAVI------------------------------------WAKDEGG-- 182
Query: 257 GPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAP 316
++ GF++ DTPG++ +K K LRASVT + L+ VRV + L A KAP
Sbjct: 183 -----EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAP 237
Query: 317 FTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA 376
+ L AR+GIAWG +GA E + A ++ R F +PLA Q+ Q KLA ML +
Sbjct: 238 LSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEG 297
Query: 377 LVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNN 436
L+ ++ RLK+ TP +S+ KR N KAL AR ARD+LGG+GI+ EYH IRHM N
Sbjct: 298 LLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLN 357
Query: 437 LEVVNTYEGTSDIHALILGRAITGIQAF 464
LE V TYEGT D+H L+LGR ITG+ AF
Sbjct: 358 LETVYTYEGTHDVHTLVLGREITGLNAF 385
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 64/446 (14%)
Query: 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL 78
D + + LLT EE+ +R V+ + + P I+ ++ + I + G +G+ G ++
Sbjct: 47 DYYHFNDLLTPEEQAIRKKVRECMEKEVAP-IMTEYWEKAEFPFHITPKLGAMGVAGGSI 105
Query: 79 RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAK 138
+GYGC G S + + EI RVD+ + V SSL M I GS+ QK KYLP LA+
Sbjct: 106 KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQ 165
Query: 139 GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
N + C+ LTEP+ GSD + + T A + I G K
Sbjct: 166 LNTVACWALTEPDN-------------------GSDASGLGTTA--TKVEGGWKINGQKR 204
Query: 199 WISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGP 258
WI ++ ADL I++A+
Sbjct: 205 WIGNSTFADLLIIFAR------------------------------------------NT 222
Query: 259 QNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFT 318
QI GFI++KD PG + + I K GLR G I L NV V + L NS++
Sbjct: 223 TTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSK 282
Query: 319 LLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALV 378
+L +R +AW +G + + M Y+ +R QF PLAA Q+ Q KL ML ++ +
Sbjct: 283 VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFL 342
Query: 379 SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
++ +L E+ TP S+ K +KA + A R++LGGNGI ++ V + +LE
Sbjct: 343 MGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLE 402
Query: 439 VVNTYEGTSDIHALILGRAITGIQAF 464
+ TYEGT DI+ L+ GR +TGI +F
Sbjct: 403 PIYTYEGTYDINTLVTGREVTGIASF 428
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 64/446 (14%)
Query: 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL 78
D + + LLT EE+ +R V+ + + P I+ ++ + I + G +G+ G ++
Sbjct: 47 DYYHFNDLLTPEEQAIRKKVRECMEKEVAP-IMTEYWEKAEFPFHITPKLGAMGVAGGSI 105
Query: 79 RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAK 138
+GYGC G S + + EI RVD+ + V SSL M I GS+ QK KYLP LA+
Sbjct: 106 KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQ 165
Query: 139 GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
N + C+ LTEP+ GSD + + T A + I G K
Sbjct: 166 LNTVACWALTEPDN-------------------GSDASGLGTTAT--KVEGGWKINGQKR 204
Query: 199 WISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGP 258
WI ++ ADL I++A+
Sbjct: 205 WIGNSTFADLLIIFAR------------------------------------------NT 222
Query: 259 QNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFT 318
QI GFI++KD PG + + I K GLR G I L NV V + L NS++
Sbjct: 223 TTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSK 282
Query: 319 LLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALV 378
+L +R +AW +G + + M Y+ +R QF PLAA Q+ Q KL ML ++ +
Sbjct: 283 VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFL 342
Query: 379 SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
++ +L E+ TP S+ K +KA + A R++LGGNGI ++ V + +LE
Sbjct: 343 MGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLE 402
Query: 439 VVNTYEGTSDIHALILGRAITGIQAF 464
+ TYEGT DI+ L+ GR +TGI +F
Sbjct: 403 PIYTYEGTYDINTLVTGREVTGIASF 428
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 201/437 (45%), Gaps = 70/437 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIV---EDFRHETSDVRAIYAEFGRLGILGCTLR-GYG 82
T EE +++ SVK F + P + E+ + E S ++ ++ + G++G + YG
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQ----GLMGIEVDPEYG 84
Query: 83 CAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
GAS +S LV E+ +VD+ +Q++L+ I K+G+++QKA YLP+L +
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-V 143
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
G F L+E AGSD ++TR D + Y++ GSK WISS
Sbjct: 144 GSFCLSEAGAGSDSFALKTRA---------------------DKEGDYYVLNGSKMWISS 182
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
A A L ++ A DPT G + I F++++DTPG + P+N
Sbjct: 183 AEHAGLFLVMANV-DPTIGYKG--ITSFLVDRDTPGLHIGK--------------PEN-- 223
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
K GLRAS T ++ +NV+V + +L + + YK LN
Sbjct: 224 --------------------KLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLN 263
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R GIA +LG A+ CF Y+ +R+QF K L Q Q ++A++ T + A +
Sbjct: 264 EGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTY 323
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
RL E+ + S+ K A + +GG G + +Y V ++ + ++
Sbjct: 324 NAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGT 383
Query: 442 TYEGTSDIHALILGRAI 458
YEG S+I + + I
Sbjct: 384 IYEGASNIQLNTIAKHI 400
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/449 (26%), Positives = 195/449 (43%), Gaps = 72/449 (16%)
Query: 18 EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVE-DFRHETSDVRAIYAEFGRLGILGC 76
+DA+N L++E++ LR ++ F L PK E D +E ++R + + G LG+LG
Sbjct: 7 DDAING---LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI 63
Query: 77 TL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPE 135
T YG +G ++ LV EI R Y S+L + + + G++ QK KYLP+
Sbjct: 64 TAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPK 123
Query: 136 LAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITG 195
L G IG ++EPNAGSDV +M + K + N YI+ G
Sbjct: 124 LISGEYIGALAMSEPNAGSDVVSM---------------------KLKAEKKGNHYILNG 162
Query: 196 SKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDAT 255
+K WI++ P AD+ I++AK D P + I FI+E
Sbjct: 163 NKFWITNGPDADVLIVYAKT-DLAAVPASRGITAFIVE---------------------- 199
Query: 256 HGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKA 315
K PG+ TS K G+R S T + ++ ++ +L + K
Sbjct: 200 --------------KGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAAN--ILGHENKG 243
Query: 316 PFTL---LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+ L L+ R +A G LG + Y+ R F + + Q+ Q K+A+M T
Sbjct: 244 VYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTR 303
Query: 373 ISLALVSCCQVGRLKESNLDTPEMIS--ILKRNNCAKALDIARNARDMLGGNGISDEYHV 430
+ V + + T + + IL CA +A + GGNG +++ +
Sbjct: 304 LMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECAT--QVALDGIQCFGGNGYINDFPM 361
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAIT 459
R + + ++ GTS++ L++GRA
Sbjct: 362 GRFLRDAKLYEIGAGTSEVRRLVIGRAFN 390
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 191/437 (43%), Gaps = 74/437 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFR---HETSDVRAIYAEFGRLGILGCTLRGYGC 83
LTQE++L+ D+V+ VL+P E R + ++A+ AE G LG+ T +G
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKAL-AELGLLGM--TTPEEWGG 59
Query: 84 AGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIG 143
G ++ L E+ D + SV S L + ++GS+ QK +YL LA+G IG
Sbjct: 60 VGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIG 119
Query: 144 CFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA 203
F C LTEP AGSD ++ RA+ +++ G K+WI+SA
Sbjct: 120 AF-----------------C--LTEPQAGSDAKSL--RAEARRVKGGFVLNGVKSWITSA 158
Query: 204 PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQI 263
A L ++ A+ E I
Sbjct: 159 GHAHLYVVMARTEKG--------------------------------------------I 174
Query: 264 RGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL--LN 321
F++EK TPG + K GL A+ T + L+ V V ++ LL + L L+
Sbjct: 175 SAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEEN-LLGEEGRGLAYALAGLD 233
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
S R G+A +G A F +A++Y +R QF K L +Q K+A+M I+ A
Sbjct: 234 SGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVL 293
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
+ R K+ S K A A+++ R A +LGG G +Y V R+ + +V
Sbjct: 294 EAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTE 353
Query: 442 TYEGTSDIHALILGRAI 458
YEGTS+I L++ R +
Sbjct: 354 IYEGTSEIQRLVIAREL 370
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 68/371 (18%)
Query: 93 LVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNA 152
L E+ + D+G S SL I ++G++ QK K+L L +G +G FGLTEPNA
Sbjct: 74 LAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNA 133
Query: 153 GSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILW 212
G+D + QT T+ + G +Y + GSK +I++ AD+ I++
Sbjct: 134 GTDASGQQTIA---TKNDDG-----------------TYTLNGSKIFITNGGAADIYIVF 173
Query: 213 AKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDT 272
A D + G N I FI+E TPG + K ED
Sbjct: 174 AMT-DKSKG--NHGITAFILEDGTPG-------FTYGKKED------------------- 204
Query: 273 PGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARYGIAWGV 331
K G+ S T + +V+V + ML +K L+ R G+A
Sbjct: 205 ----------KMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQA 254
Query: 332 LGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI----SLALVSCCQVGRLK 387
LG AE + A Y RVQF KPL Q KLA+M I +L + C+ K
Sbjct: 255 LGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGK 314
Query: 388 ESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTS 447
+D +I KR A+ + A + GG G S+EY V RHM + ++ YEGT+
Sbjct: 315 PFTVDA----AIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTN 370
Query: 448 DIHALILGRAI 458
++ ++ G A+
Sbjct: 371 EVQLMVTGGAL 381
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/430 (24%), Positives = 177/430 (41%), Gaps = 63/430 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
L + ++L + + F + L P I E A + G LG+L + G AG
Sbjct: 6 LPETHQMLLQTCRDFAEKELFP-IAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAG 64
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+++ + EI R + + SV +SL +G I K+GS +QK ++ G+ IGCF
Sbjct: 65 LDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCF 124
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
L+E P GSD T A+ + +S+++ G+K WI++A
Sbjct: 125 ALSE-------------------PGNGSDAGAASTTARAE--GDSWVLNGTKAWITNAWE 163
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A +++A + QN I
Sbjct: 164 ASAAVVFASTD---------------------------------------RALQNKSISA 184
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F++ TPG + K G+R S T ++ ++ R+ +D +L +K L+ R
Sbjct: 185 FLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGR 244
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
GIA LG A+ A +Y +R+ F PL Q+ Q KLA+M + A + +
Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304
Query: 385 RLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYE 444
LK++ + ++ K A I+ A +LGG G E RH + + YE
Sbjct: 305 MLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYE 364
Query: 445 GTSDIHALIL 454
GTS+I L++
Sbjct: 365 GTSEIQRLVI 374
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/451 (25%), Positives = 188/451 (41%), Gaps = 86/451 (19%)
Query: 32 KLLRDSVKSFCDAVLHPKIVEDFRHETSDVRA-IYAEFGRLGILGCTL-RGYGCAGASHI 89
K + + ++F + + P ++E H ++ + + G LG+L + YG +
Sbjct: 33 KEIARTTRTFVEREVLP-LLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKV 91
Query: 90 SGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTE 149
+VA E+ G+ Y +S+ + +G+++QK KYLP+LA G I +
Sbjct: 92 ISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAY---- 146
Query: 150 PNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLC 209
C LTEP +GSD +TRA YI+ G K WIS+A A L
Sbjct: 147 -------------C--LTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLF 191
Query: 210 ILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIE 269
++AK D H F++E
Sbjct: 192 TVFAKV-------------------------------------DGEH------FTAFLVE 208
Query: 270 KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARYGIA 328
+DTPG + K G++AS T + L++V+V + +L + +K F +LN RY +
Sbjct: 209 RDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLG 268
Query: 329 WGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQ-VGRLK 387
G +G A+ ++ Y RVQF +P+ + Q KL M + I A + + VG +
Sbjct: 269 AGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLID 328
Query: 388 ESNLDT--PEMI-----------SILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434
E+ L PE + SI+K + + GG G S EY + R
Sbjct: 329 EALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAY 388
Query: 435 NNLEVVNTYEGTSDIHAL-----ILGRAITG 460
+ + +EGT++I+ L +L RA+ G
Sbjct: 389 RDARINRIFEGTNEINRLLIPGMLLRRALKG 419
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 182/440 (41%), Gaps = 74/440 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL--RGYGCA 84
L +E + R + + F + +P D+ R+ +A+ G G L C YG
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPH-YNDWEKRGIIPRSFWAKMGENGFL-CPWVDEKYGGL 67
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
A ++ E+E+V S + + + +V I YG+++QK K+LP+ G LI
Sbjct: 68 NADFAYSVVINEELEKVGSSLVGI-GLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITA 126
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+TEP AGSD+AN+ T + YI+ G KT+I++
Sbjct: 127 IAMTEPGAGSDLANISTTAV---------------------KDGDYYIVNGQKTFITNGI 165
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
ADL ++ K DP P + I ++E+DTPG R
Sbjct: 166 HADLIVVACKT-DPQAKPPHRGISLLVVERDTPGF-----------------------TR 201
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL---LN 321
G +E K GL A T + + +V LL K + L L
Sbjct: 202 GRKLE-------------KVGLHAQDTAELFFQDAKVPAYN--LLGEEGKGFYYLMEKLQ 246
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R +A AAE FS+ + Y+ R F K ++ Q Q +LA M T+I+L
Sbjct: 247 QERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTF-- 304
Query: 382 QVGRLKESNLDTPEM---ISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
V R+ E ++ ++ +S+ K A +A A + GG G +EY + R ++
Sbjct: 305 -VDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIP 363
Query: 439 VVNTYEGTSDIHALILGRAI 458
V Y GT+++ I+ R +
Sbjct: 364 VSAIYAGTNEMMKTIIARQL 383
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 180/433 (41%), Gaps = 69/433 (15%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVE-DFRH--ETSDVRAIYAEFGRLGILGCTL-RGYG 82
L + ++LR + + F + L P + D H TS V+ + G LG+L +
Sbjct: 10 LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVK----KMGELGLLAMDVPEELS 65
Query: 83 CAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
AG +++ + EI R + + SV +SL +G I K+GS +QK +++ G+ I
Sbjct: 66 GAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKI 125
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
GCF L+E P GSD T A+ + +S+++ G+K WI++
Sbjct: 126 GCFALSE-------------------PGNGSDAGAASTTAREE--GDSWVLNGTKAWITN 164
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
+ A +++A + QN
Sbjct: 165 SWEASATVVFASTD---------------------------------------RSRQNKG 185
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
I F++ TPG + K G+RAS T ++ ++ R+ ++ +L +K L+
Sbjct: 186 ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLD 245
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R GIA LG A+ A Y +R F PL Q Q KLA+M + A +
Sbjct: 246 MGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTW 305
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
+ LK++ + ++ K A I+ A +LGG G E R+ + +
Sbjct: 306 RAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITE 365
Query: 442 TYEGTSDIHALIL 454
YEGTS+I L++
Sbjct: 366 IYEGTSEIQRLVI 378
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 192/459 (41%), Gaps = 63/459 (13%)
Query: 2 SLFRPLLRSYSTKFNW--EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETS 59
S+ R RS TK N E L S T+++K + + + F + P E +
Sbjct: 14 SISRFHWRSQHTKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEY 73
Query: 60 DVRAIYAEFGRLGILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMG 118
V I + LG++ + G G L++ E+ +G ++ +SL
Sbjct: 74 PVPLIRRAW-ELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQM 131
Query: 119 AIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANM 178
I G+D+QK KYL + + L+ + C +TEP AGSDVA +
Sbjct: 132 PIIIAGNDQQKKKYLGRMTEEPLMCAY-----------------C--VTEPGAGSDVAGI 172
Query: 179 QTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPG 238
+T+A + + YII G K WI++ A+ L A+ DP +P+
Sbjct: 173 KTKA--EKKGDEYIINGQKMWITNGGKANWYFLLARS-DP-----DPK------------ 212
Query: 239 APLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDN 298
P N GFI+E DTPG + + G R S T I ++
Sbjct: 213 ------------------APANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFED 254
Query: 299 VRVSQDQMLLLANS-YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLA 357
V+V ++ +L+ + +K + R +A G +G A+ A Y L+R F K L
Sbjct: 255 VKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLV 314
Query: 358 ANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARD 417
+Q LA M + LA +S + +S SI K A +A +A
Sbjct: 315 EHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQ 374
Query: 418 MLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGR 456
+LGGNG + EY V + M + ++ YEGTS I LI+ R
Sbjct: 375 ILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAR 413
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 186/434 (42%), Gaps = 64/434 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
LT+E++ L+ + F V+ P + +++ + + + +G+L + YG G
Sbjct: 5 LTEEQRQLQALARRFAKEVILP-VAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMG 63
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+ +V E+ G ++ + S L + + G+++QK ++L L
Sbjct: 64 LKMLDEVIVGEELAYACMGIYTI-PMASDLGITPVLLAGTEEQKERFLRPL--------- 113
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
TE A + F L+EP GSD A ++TRA + Y++ G+K WIS+
Sbjct: 114 --TEKPALA--------AFALSEPGNGSDAAALKTRAIR--QGDHYVLNGTKMWISNGGE 161
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A+ +++A NP++R + +
Sbjct: 162 AEWVVVFATV--------NPELR-------------------------------HKGVVA 182
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVS-QDQMLLLANSYKAPFTLLNSAR 324
++E+ TPG++ I GK G RAS T + ++V+V ++++ +K LN R
Sbjct: 183 LVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTR 242
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
+A G +G A AR Y +R F +P+A Q Q KL +ML I A +
Sbjct: 243 IPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAA 302
Query: 385 RLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYE 444
L + L +I K A + A A + GG G E+ V + + ++++ YE
Sbjct: 303 WLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYE 362
Query: 445 GTSDIHALILGRAI 458
GT++I LI+ R I
Sbjct: 363 GTNEIQRLIIARHI 376
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 116/441 (26%), Positives = 184/441 (41%), Gaps = 61/441 (13%)
Query: 18 EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCT 77
E L S T+++K + + + F + P E + V I + LG++
Sbjct: 7 EPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAW-ELGLMNTH 65
Query: 78 L-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPEL 136
+ G G L++ E+ +G ++ +SL I G+D+QK KYL +
Sbjct: 66 IPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRM 124
Query: 137 AKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196
+ L+ + C +TEP AGSDVA ++T+A + + YII G
Sbjct: 125 TEEPLMCAY-----------------C--VTEPGAGSDVAGIKTKA--EKKGDEYIINGQ 163
Query: 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATH 256
K WI++ A+ L A+ DP +P+
Sbjct: 164 KMWITNGGKANWYFLLARS-DP-----DPK------------------------------ 187
Query: 257 GPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKA 315
P N GFI+E DTPG + + G R S T I ++V+V ++ +L+ + +K
Sbjct: 188 APANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKV 247
Query: 316 PFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISL 375
+ R +A G +G A+ A Y L+R F K L +Q LA M + L
Sbjct: 248 AMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVEL 307
Query: 376 ALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMN 435
A +S + +S SI K A +A +A +LGGNG + EY V + M
Sbjct: 308 ARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMR 367
Query: 436 NLEVVNTYEGTSDIHALILGR 456
+ ++ YEGTS I LI+ R
Sbjct: 368 DAKIYQIYEGTSQIQRLIVAR 388
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 185/464 (39%), Gaps = 93/464 (20%)
Query: 19 DALNISSLLT-----QEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
D + I + T E K + + + F + P++ +HE + E G LG+
Sbjct: 20 DEITIDQVFTPEDFSSEHKXIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGL 79
Query: 74 LGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKY 132
LG + YG G +S L+A + R G+ + + I +G+++QK KY
Sbjct: 80 LGADVPEEYGGIGLDKVSSALIAEKFSRA-GGFAITHGAHVGIGSLPIVLFGNEEQKKKY 138
Query: 133 LPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYI 192
LP LA G + + LTEP +GSD +T A+ + Y+
Sbjct: 139 LPLLATGEKLAAYALTEP-------------------GSGSDALGAKTTARLNAEGTHYV 179
Query: 193 ITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCE 252
+ G K WI+++ AD+ I++AK D H FI+EKD G
Sbjct: 180 LNGEKQWITNSAFADVFIVYAKI-DGEH------FSAFIVEKDYAGVS------------ 220
Query: 253 DATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLAN 311
TS + K G++ S T ++ L++ V ++ +L +
Sbjct: 221 ------------------------TSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGK 256
Query: 312 SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT 371
+ F +LN RY + G +G+A+ ++ Y R QF +P+A + Q KLAN
Sbjct: 257 GHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAA 316
Query: 372 DISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARD-------------- 417
A S + L ES T + ++ A A IA A +
Sbjct: 317 KTYAAESSVYRTVGLFESRXSTLSEEEV--KDGKAVAASIAEYAIECSLNKVFGSEVLDY 374
Query: 418 -------MLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALIL 454
+ GG G EY + R + + +EGT++I+ LI+
Sbjct: 375 TVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIV 418
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 115/449 (25%), Positives = 186/449 (41%), Gaps = 69/449 (15%)
Query: 18 EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCT 77
E S LT+++K + + + F + P E R V + + LG++
Sbjct: 7 EPGSGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAW-ELGLMNTH 65
Query: 78 L-RGYGCAGASHISGGLVAREIERVDSGYRSMYSV----QSSLVMGAIDKYGSDKQKAKY 132
+ +G G I L+ E+ +G ++ Q L++G G+ +Q+ KY
Sbjct: 66 IPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIG-----GNYQQQKKY 120
Query: 133 LPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYI 192
L + + L+ + C +TEP AGSDVA ++T+A + + YI
Sbjct: 121 LGRMTEEPLMCAY-----------------C--VTEPGAGSDVAGIKTKA--EKKGDEYI 159
Query: 193 ITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCE 252
I G K WI++ A+ L A+ DP P+ P + F
Sbjct: 160 INGQKMWITNGGKANWYFLLARS-DPD--PKAPASKAFT--------------------- 195
Query: 253 DATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS 312
GFI+E DTPG + + G R S T I ++VRV ++ +L +
Sbjct: 196 ------------GFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGA 243
Query: 313 -YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT 371
+K + R +A G +G A+ A Y L+R F K LA +Q LA+M
Sbjct: 244 GFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAM 303
Query: 372 DISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431
+ LA +S + +S SI K A +A +A + GGNG + EY V
Sbjct: 304 KVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVE 363
Query: 432 RHMNNLEVVNTYEGTSDIHALILGRAITG 460
+ M + ++ YEGT+ I +I+ R G
Sbjct: 364 KLMRDAKIYQIYEGTAQIQRIIIAREHIG 392
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 184/440 (41%), Gaps = 69/440 (15%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
LT+++K + + + F + P E R V + + LG++ + +G G
Sbjct: 6 LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAW-ELGLMNTHIPESFGGLG 64
Query: 86 ASHISGGLVAREIERVDSGYRSMYSV----QSSLVMGAIDKYGSDKQKAKYLPELAKGNL 141
I L+ E+ +G ++ Q L++G G+ +Q+ KYL + + L
Sbjct: 65 LGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIG-----GNYQQQKKYLGRMTEEPL 119
Query: 142 IGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWIS 201
+ + C +TEP AGSDVA ++T+A + + YII G K WI+
Sbjct: 120 MCAY-----------------C--VTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWIT 158
Query: 202 SAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNP 261
+ A+ L A+ DP P+ P + F
Sbjct: 159 NGGKANWYFLLARS-DPD--PKAPASKAFT------------------------------ 185
Query: 262 QIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLL 320
GFI+E DTPG + + G R S T I ++VRV ++ +L + +K
Sbjct: 186 ---GFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTF 242
Query: 321 NSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSC 380
+ R +A G +G A+ A Y L+R F K LA +Q LA+M + LA +S
Sbjct: 243 DKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSY 302
Query: 381 CQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVV 440
+ +S SI K A +A +A + GGNG + EY V + M + ++
Sbjct: 303 QRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIY 362
Query: 441 NTYEGTSDIHALILGRAITG 460
YEGT+ I +I+ R G
Sbjct: 363 QIYEGTAQIQRIIIAREHIG 382
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 154/371 (41%), Gaps = 70/371 (18%)
Query: 95 AREIERV---DSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPN 151
AR +E V D G S+ I +G+ QK KYLP+LA G + F
Sbjct: 113 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAF------ 166
Query: 152 AGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCIL 211
C LTEP++GSD A+++T A P Y + GSK WIS+ LAD+ +
Sbjct: 167 -----------C--LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTV 213
Query: 212 WAK--CEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIE 269
+AK DP G +I F++E+ G THGP
Sbjct: 214 FAKTPVTDPATGAVKEKITAFVVERGFGG---------------ITHGPPEK-------- 250
Query: 270 KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARYGIA 328
K G++AS T + D VRV + +L + + +K +LN+ R+G+A
Sbjct: 251 -------------KMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMA 297
Query: 329 WGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANM-----LTDISLALVSCCQV 383
+ G + A + +R QF + + + Q KLA M +T+ +VS
Sbjct: 298 AALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSA--- 354
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+ + D +I K A + ++GG G E V R + +L + +
Sbjct: 355 -NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIF 413
Query: 444 EGTSDIHALIL 454
EGT+DI L +
Sbjct: 414 EGTNDILRLFV 424
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 154/371 (41%), Gaps = 70/371 (18%)
Query: 95 AREIERV---DSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPN 151
AR +E V D G S+ I +G+ QK KYLP+LA G + F
Sbjct: 93 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAF------ 146
Query: 152 AGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCIL 211
C LTEP++GSD A+++T A P Y + GSK WIS+ LAD+ +
Sbjct: 147 -----------C--LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTV 193
Query: 212 WAK--CEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIE 269
+AK DP G +I F++E+ G THGP
Sbjct: 194 FAKTPVTDPATGAVKEKITAFVVERGFGG---------------ITHGPPEK-------- 230
Query: 270 KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARYGIA 328
K G++AS T + D VRV + +L + + +K +LN+ R+G+A
Sbjct: 231 -------------KMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMA 277
Query: 329 WGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANM-----LTDISLALVSCCQV 383
+ G + A + +R QF + + + Q KLA M +T+ +VS
Sbjct: 278 AALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSA--- 334
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+ + D +I K A + ++GG G E V R + +L + +
Sbjct: 335 -NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIF 393
Query: 444 EGTSDIHALIL 454
EGT+DI L +
Sbjct: 394 EGTNDILRLFV 404
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 115/441 (26%), Positives = 183/441 (41%), Gaps = 61/441 (13%)
Query: 18 EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCT 77
E L S T+++K + + + F + P E + V I + LG++
Sbjct: 7 EPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAW-ELGLMNTH 65
Query: 78 L-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPEL 136
+ G G L++ E+ +G ++ +SL I G+D+QK KYL +
Sbjct: 66 IPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRM 124
Query: 137 AKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196
+ L+ + C +TEP AGSDVA ++T+A + + YII G
Sbjct: 125 TEEPLMCAY-----------------C--VTEPGAGSDVAGIKTKA--EKKGDEYIINGQ 163
Query: 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATH 256
K WI++ A+ L A+ DP +P+
Sbjct: 164 KMWITNGGKANWYFLLARS-DP-----DPK------------------------------ 187
Query: 257 GPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKA 315
P N GFI+E DTPG + + G R S T I ++V+V ++ +L+ + +K
Sbjct: 188 APANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKV 247
Query: 316 PFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISL 375
+ R +A G +G A+ A Y L+R F K L +Q LA M + L
Sbjct: 248 AMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVEL 307
Query: 376 ALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMN 435
A +S + +S SI K A +A +A +LGGNG + EY V + M
Sbjct: 308 ARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMR 367
Query: 436 NLEVVNTYEGTSDIHALILGR 456
+ ++ Y GTS I LI+ R
Sbjct: 368 DAKIYQIYGGTSQIQRLIVAR 388
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/446 (26%), Positives = 193/446 (43%), Gaps = 75/446 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVE-----DFRHETSDVRAIYAEFGRLGILGCTL-RG 80
L++E ++L+ V++F + + P + F +E + VR + G LG G +
Sbjct: 5 LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEA-VRPM----GELGFFGTVIPEE 59
Query: 81 YGCAGASH--ISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAK 138
YG G ++ +V EI R S R +++ I YGS+ K KY+P+L+
Sbjct: 60 YGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSS 119
Query: 139 GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
+G FG+TEP+ AGSDV M + A + + +++ GSKT
Sbjct: 120 AEFLGGFGITEPD-------------------AGSDVMAMSSTA--EDKGDHWLLNGSKT 158
Query: 199 WISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGP 258
WIS+A AD+ I +A D G + + F+IE P
Sbjct: 159 WISNAAQADVLIYYAYT-DKAAGSRG--LSAFVIE------------------------P 191
Query: 259 QNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPF 317
+N PG +TS ++ K G AS TG + LDNV+V ++ +L + + F
Sbjct: 192 RN-----------FPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVF 239
Query: 318 TLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLAL 377
LN R A G +G A+ C A Y +R QF KP+ Q+ Q +A M ++ A
Sbjct: 240 GSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAAR 299
Query: 378 VSCCQVGRLK-ESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNN 436
+ + K E L+ +++ K A A +LG G S EY V R +
Sbjct: 300 LLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRD 359
Query: 437 LEVVNTYEGTSDIHALILGRAITGIQ 462
EG+++I +I+ G++
Sbjct: 360 APTYYMVEGSANICKMIIALDQLGVR 385
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 180/438 (41%), Gaps = 70/438 (15%)
Query: 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV--RAIYAEFGRLGILGCTL-RGYG 82
L +QE L + + D VL P IV+ RHE + ++ + G G+L +G
Sbjct: 15 LPSQEAAELIELTREIADKVLDP-IVD--RHEKDETYPEGVFEQLGAAGLLSLPQPEEWG 71
Query: 83 CAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
G + V EI + SV S L + +G+++QK ++LP + G I
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
G + L+EP AG SD A ++ A P+ Y+I GSK+WI
Sbjct: 131 GAYSLSEPQAG-------------------SDAAALRCAAT--PTDGGYVINGSKSWI-- 167
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
THG + AD L+A+ + + G
Sbjct: 168 ----------------THGGK------------------ADFYTLFARTGEGSRG----- 188
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
+ F++ D PG + K GL A T S DN R+ D+ + + F+ L+
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALD 248
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
S R GIA G A+ A +Y +R F + + +Q LA+M ++ A +
Sbjct: 249 SGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYL 308
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
R ++ + SI K A+ + +A + GG G + +Y V R+M +++
Sbjct: 309 DAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQ 368
Query: 442 TYEGTSDIHALILGRAIT 459
+EGT+ I L++ R +T
Sbjct: 369 IFEGTNQIQRLVIARGLT 386
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 178/440 (40%), Gaps = 75/440 (17%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG------ 80
L +E LR+++++ + + P E D +A + E +
Sbjct: 19 LPEEHIALREAIRALAEKEIAPYAAE------VDEKARFPEEALAALNSSGFSAIHVPEE 72
Query: 81 YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGN 140
YG GA ++ +V E+ RVD + +V MG I + GS++ K + LP +A G
Sbjct: 73 YGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILR-GSEELKKQVLPAVASGE 131
Query: 141 LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWI 200
+ + L+E AGSD A +M+TRA D + +I+ GSK WI
Sbjct: 132 AMASYALSEREAGSDAA-------------------SMRTRAVAD--GDDWILNGSKCWI 170
Query: 201 SSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN 260
++ + + A DP G
Sbjct: 171 TNGGKSTWYTVMA-VTDPDKGANG------------------------------------ 193
Query: 261 PQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTL 319
I F++ KD G+ + K G++ S T + +N R+ D+++ +K
Sbjct: 194 --ISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALAT 251
Query: 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA-LV 378
L+ R I +G A+ A +Y +R QF +P++ NQ Q LA+M I A L+
Sbjct: 252 LDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLM 311
Query: 379 SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
R + D + + K A+++ +A + GG G + ++ V R M + +
Sbjct: 312 VYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAK 371
Query: 439 VVNTYEGTSDIHALILGRAI 458
+ YEGT+ I +++ RA+
Sbjct: 372 ITQIYEGTNQIQRVVMSRAL 391
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/435 (24%), Positives = 173/435 (39%), Gaps = 67/435 (15%)
Query: 28 TQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAGA 86
T E + L +SF + + PK+ E + H R ++ +G+LG G +G
Sbjct: 30 TPERRALSQMARSFVEREIAPKLAE-WEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGG 88
Query: 87 SHISGGLVAREIERVDSGYRSMYSV-QSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+ I LV I ++ + + I GSD +Y+ G +IG
Sbjct: 89 NAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSL 148
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
G+TEP AG SDVAN++TRA + ++Y++ G+KT+I+S
Sbjct: 149 GVTEPGAG-------------------SDVANLRTRAVRE--GDTYVVNGAKTFITSGVR 187
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD + P +G G L
Sbjct: 188 ADFVTTAVRTGGPGYG----------------GVSL------------------------ 207
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSAR 324
+I+K++PG+E S K G R S T +S +VRV D ++ NS + + R
Sbjct: 208 LVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAER 267
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
GIA A +A+S+ +R F +PL QI + KLA M + +A V
Sbjct: 268 LGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVM 327
Query: 385 RLKESNLDTPEMISILKRNNCAKALD-IARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+ + D +S+ K N A D + A + GG G E + RH + ++
Sbjct: 328 QRWLAGEDVVAEVSMAK-NTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIG 386
Query: 444 EGTSDIHALILGRAI 458
GT++I ++ + I
Sbjct: 387 GGTNEIMNEVIAKRI 401
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 181/444 (40%), Gaps = 84/444 (18%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLR-GYGCAG 85
L +E+K + F + P + E + E V + + +LG G ++ G +G
Sbjct: 19 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVD-VMRKAAQLGFGGVYIQTDVGGSG 77
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGA--IDKYGSDKQKAKYLPELAKGNLIG 143
S + ++ E + +G S + S M A ID +G+++Q+ K+ P L
Sbjct: 78 LSRLDTSVI---FEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCT----- 129
Query: 144 CFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA 203
+ + C LTEP +GSD A++ T AK + YI+ GSK +IS A
Sbjct: 130 ------------MEKFASYC--LTEPGSGSDAASLLTSAK--KQGDHYILNGSKAFISGA 173
Query: 204 PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQI 263
+D+ ++ + T GP I
Sbjct: 174 GESDIYVVMCR----------------------------------------TGGPGPKGI 193
Query: 264 RGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRV-------SQDQMLLLANSYKAP 316
++EK TPG + K G + T ++ ++ V S+ Q L+A
Sbjct: 194 SCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIA------ 247
Query: 317 FTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA 376
LN R IA LGAA + R ++ R QF +PLA+NQ Q LA+M T + A
Sbjct: 248 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAA 307
Query: 377 --LVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434
+V V L+E D + S+ K + I A M GG G +Y V +++
Sbjct: 308 RLMVRNAAVA-LQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYV 366
Query: 435 NNLEVVNTYEGTSDIHALILGRAI 458
+ V EG++++ +++ R++
Sbjct: 367 RDSRVHQILEGSNEVMRILISRSL 390
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/435 (24%), Positives = 173/435 (39%), Gaps = 71/435 (16%)
Query: 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETS----DVRAIYAEFGRLGILGCTLRGYGCAG 85
EE+ + + F A + P E R T D+ AEFG G L YG AG
Sbjct: 10 EERQVLGPFREFLKAEVAPGAAE--RDRTGAFPWDLVRKLAEFGVFGAL--VPEAYGGAG 65
Query: 86 ASHISGGLVAREIERV---DSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
+S L AR +E + D + +SL G I GS+ QK +LP+LA G +
Sbjct: 66 ---LSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEAL 122
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
G +GLTEP +GSD A ++T+ + + + G+K +I+
Sbjct: 123 GAWGLTEPGSGSDAAALKTKA---------------------EKVEGGWRLNGTKQFITQ 161
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
+A + ++ A+ DP P+ ++
Sbjct: 162 GSVAGVYVVMART-DPPPSPER----------------------------------KHQG 186
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
I F + G + + K GL AS T + L+++ V ++ +L + +L+
Sbjct: 187 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLD 246
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R GIA +G + A +Y R F +P+A + KLA T++ A +
Sbjct: 247 GGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYL 306
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
+ LK++ + K A+ A +LGG G +Y V R+ + +
Sbjct: 307 KAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTR 366
Query: 442 TYEGTSDIHALILGR 456
EGTS+I L++ R
Sbjct: 367 IGEGTSEILKLVIAR 381
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 50/292 (17%)
Query: 163 CFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGP 222
+TEP GSDV +++TRA D + Y+I G+KT+I+S AD + A+
Sbjct: 144 ALAITEPGGGSDVGHLRTRADLD--GDHYVINGAKTYITSGVRADYVVTAAR-------- 193
Query: 223 QNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKG 282
T GP + +++K TPG+E +
Sbjct: 194 --------------------------------TGGPGAGGVSLIVVDKGTPGFEVTRKLD 221
Query: 283 KFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPF-TLLNSARYGIAWGVLGAAEFCFSM 341
K G R+S T +S +VRV ++ N+ A + R G+A A+ C +
Sbjct: 222 KMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDL 281
Query: 342 ARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLK---ESNLDTPEMIS 398
+ +R F +PL + Q Q LA M I +A V V + E+NL
Sbjct: 282 TVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAE---V 338
Query: 399 ILKRNNCAKALD-IARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDI 449
+N +A + +A A + GG G E V R ++ ++ GT++I
Sbjct: 339 CFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEI 390
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 155/390 (39%), Gaps = 91/390 (23%)
Query: 86 ASHISGGLVARE----IERVDSGYRSMYSVQSSLVMGA--IDKYGSDKQKAKYLPELAKG 139
A H GL +RE V S S+ SV +S M A + + G Q+A +L EL G
Sbjct: 45 AEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSG 104
Query: 140 NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTW 199
L G +E AGSD++ M+TR + D ++ ++ G K W
Sbjct: 105 KLA--------------------AVGFSERQAGSDLSAMRTRVRLD--GDTAVVDGHKVW 142
Query: 200 ISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259
++A AD ++ F +++D GA +
Sbjct: 143 TTAAAYADHLVV------------------FGLQEDGSGAVV------------------ 166
Query: 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL 319
++ DTPG + G RA+ + LD VRV +L + P +
Sbjct: 167 -------VVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGA-VLAGSGASLPMLV 218
Query: 320 LNSARYG---IAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA 376
S YG +AWG +G C + A ++ R QF +PL +Q+ +A++ T +A
Sbjct: 219 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIA 278
Query: 377 LVSCCQVGRLKESNLD--TPEMI--SILKRNNCAKALDIARNARDMLGGNGISDEYHVI- 431
C + D +PEM+ +IL ++ A+ + + + E HV+
Sbjct: 279 ARVC----EYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVE 334
Query: 432 RHMNNLEVVNTYEGTSDI-------HALIL 454
R + +++ EG+S++ HAL L
Sbjct: 335 RAYRDAKLMEIIEGSSEMCRVMLAQHALAL 364
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 146/378 (38%), Gaps = 70/378 (18%)
Query: 84 AGASHISGGLVAREIERVDSGYRSMYSVQSSLV--MGAIDKYGSDKQKAKYLPELAKGNL 141
+G SH+ L+A E + +++ Q+ M + YGS++QK ++L L +GN+
Sbjct: 90 SGLSHVDYALIAEETGKCFFA-PDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNI 148
Query: 142 IGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWIS 201
CF +TEP+ S SD N++ + D +SY+I G K W S
Sbjct: 149 TSCFCMTEPDVAS------------------SDATNIECSIQRD--EDSYVINGKKWWSS 188
Query: 202 SA--PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259
A P + I+ + ++ T ++ Q ++ +TPG +
Sbjct: 189 GAGNPKCKIAIVLGRTQN-TSLSRHKQHSMILVPMNTPGVKI------------------ 229
Query: 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLL-LANSYKAPFT 318
IR + GY + G F I + VRV ++L ++
Sbjct: 230 ---IRPLSVF----GYTDNFHGGHF--------EIHFNQVRVPATNLILGEGRGFEISQG 274
Query: 319 LLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALV 378
L R +G AE + R+ F K L A+++ +A+ + + +A+
Sbjct: 275 RLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEV----VAHWIAESRIAIE 330
Query: 379 SCCQVGRLKESNLDT------PEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ ++DT + I+++K I A + GG G+S +Y +
Sbjct: 331 KIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLAN 390
Query: 433 HMNNLEVVNTYEGTSDIH 450
V+ +G ++H
Sbjct: 391 MYAITRVLRLADGPDEVH 408
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 60/203 (29%)
Query: 115 LVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSD 174
+ + AI G+DKQ+ K+LP K +IGC + TE GS+
Sbjct: 124 MFIPAIKGQGTDKQQEKWLPLAYKMQIIGC-------------------YAQTELGHGSN 164
Query: 175 VANMQTRAKYDPSSNSYII-----TGSKTWISS-APLADLCILWAKCEDPTHGPQNPQIR 228
V ++T A +DP ++ ++I T SK W ++ +++A+ T G ++ +
Sbjct: 165 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL--ITDG-KDYGVN 221
Query: 229 GFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFG--- 285
GFI+ Q+R K PG I KFG
Sbjct: 222 GFIV-----------------------------QLRSLEDHKPLPGVTVGDIGMKFGNGA 252
Query: 286 LRASVTGSISLDNVRVSQDQMLL 308
+ G +S D+VR+ +DQML+
Sbjct: 253 YNSMDNGVLSFDHVRIPRDQMLM 275
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 131/348 (37%), Gaps = 67/348 (19%)
Query: 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVA 176
M + +YGS +QK +L L +G++ F +TEP+ S SD
Sbjct: 118 MEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVAS------------------SDAT 159
Query: 177 NMQTRAKYDPSSNSYIITGSKTWISSAPLADL-CILWAKCEDPTHGPQNPQIRGFIIEKD 235
NM A + + +I G K W + D I++ DP + + + ++ D
Sbjct: 160 NMAATAVVE--GDEVVINGRKWWSTGVGHPDCKVIIFMGLTDP-NAHRYARHSMVLVPMD 216
Query: 236 TPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSIS 295
TPG + + P + GF D PG G +S
Sbjct: 217 TPGITVERML---------------PTM-GFY---DEPGGH---------------GVVS 242
Query: 296 LDNVRVSQDQMLL-LANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK 354
DNVR+ D + ++ L R A ++G AE A LDR F K
Sbjct: 243 FDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGK 302
Query: 355 PLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAK--ALDIA 412
PL + ++A+ I+ + L LDT ++ L + K A ++A
Sbjct: 303 PLVNLGGNRERIADARIAINQTRLLVLHAAWL----LDTVGIMGALSAVSEIKVAAPNMA 358
Query: 413 RNARDML----GGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGR 456
+ DM GG G+S+++ + N + +G ++H ++ R
Sbjct: 359 QQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVAR 406
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 60/203 (29%)
Query: 115 LVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSD 174
+ + AI G+++Q+ K+L K +IGC + TE GS+
Sbjct: 105 MFVPAIKGQGTEEQQKKWLSLANKMQIIGC-------------------YAQTELGHGSN 145
Query: 175 VANMQTRAKYDPSSNSYII-----TGSKTWISS-APLADLCILWAKCEDPTHGPQNPQIR 228
V ++T A DP ++ ++I T SK W ++ +++A+ T+G ++ I
Sbjct: 146 VQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARL--ITNG-KDYGIH 202
Query: 229 GFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFG--- 285
GFI+ Q+R P I K G
Sbjct: 203 GFIV-----------------------------QLRSLEDHSPLPNITVGDIGTKMGNGA 233
Query: 286 LRASVTGSISLDNVRVSQDQMLL 308
+ G + D+VR+ +DQML+
Sbjct: 234 YNSMDNGFLMFDHVRIPRDQMLM 256
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 239 APLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDN 298
AP+ ++ A+ D T GP P++ ++ +DTPG+ G+RAS T I D+
Sbjct: 175 APVGTHFVINART-DGTDGP--PRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDD 231
Query: 299 VRVSQDQMLL 308
+ D +L+
Sbjct: 232 CPIPADHVLM 241
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 57/305 (18%)
Query: 164 FGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQ 223
G+TE GSDV + TRA+ SY + G K W S P +D ++ A+ T G
Sbjct: 182 MGMTEKQGGSDVMSNTTRAE-RLEDGSYRLVGHK-WFFSVPQSDAHLVLAQ----TAG-- 233
Query: 224 NPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGK 283
+ F + + P Q IR +E+ +K K
Sbjct: 234 --GLSCFFVPRFLPDG-------------------QRNAIR---LER---------LKDK 260
Query: 284 FGLRASVTGSISLDNVRVSQDQMLLL----ANSYKAPFTLLNSARYGIAWGVLGAAEFCF 339
G R++ + + QD + L + + R+ A G F
Sbjct: 261 LGNRSNASCEVEF------QDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAF 314
Query: 340 SMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMI-- 397
S+A + R F PL + + L+ M + ++ R + D E +
Sbjct: 315 SLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWA 374
Query: 398 ----SILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALI 453
K C + + A ++LGG G +E + R + V + +EG+ +I L
Sbjct: 375 RLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLD 434
Query: 454 LGRAI 458
+ R +
Sbjct: 435 VLRVL 439
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 26/172 (15%)
Query: 161 TRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTH 220
T + TE G+ + ++T A YDP + +I+ ++P W
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFIL--------NSPTVTSIKWWP------- 177
Query: 221 GPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVI 280
G + + LA L I +C H P IR K PG I
Sbjct: 178 --------GGLGKTSNHAIVLAQL-ITQGECY-GLHAFVVP-IREIGTHKPLPGITVGDI 226
Query: 281 KGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVL 332
KFG G + +DN R+ ++ ML+ K T + + +G +
Sbjct: 227 GPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTM 278
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 238 GAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLD 297
GA +DL ++ +D + PQ I I G + G+R + +GS
Sbjct: 184 GAKGSDLLFVFGVVQDDS--PQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFH 241
Query: 298 NVRVSQDQMLLLANSYKAPFT--------------LLNSARYGIAWGVLGAA-EFCFSMA 342
NV+V D++L N++ F + + GIA G L AA E+ + A
Sbjct: 242 NVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQA 301
Query: 343 RSYMLDRVQ 351
R + +Q
Sbjct: 302 RPWTPAGIQ 310
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 35/191 (18%)
Query: 171 AGSDVANMQTRAKYDPSSN--SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIR 228
AGS++ QT+AKY S I++G K+ A + + + H + ++
Sbjct: 78 AGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELG 137
Query: 229 GFIIEKD-TPGAPLADLCILWA-KCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGL 286
G ++ TPG C W K +D HG Q Y+ +VI G G+
Sbjct: 138 GTVLTAHLTPGHTRG--CTTWTMKLKD--HGKQ---------------YQ-AVIIGSIGV 177
Query: 287 RASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYM 346
G+ +DN+ + +A YK +L S R I LG+ F + Y+
Sbjct: 178 NP---GAKLVDNITYPK-----IAEDYKHSIKVLESMRCDI---FLGSHAGMFDLKNKYV 226
Query: 347 LDRVQFNKPLA 357
L N P
Sbjct: 227 LLSKGQNNPFV 237
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 196 SKTWISSAPLADLCILWAKCEDPTHGPQ-NPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
K+WI+ PLA L + +A+ + + RG + TP P+ D + + + D
Sbjct: 36 EKSWIARTPLALLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLD- 94
Query: 255 THGPQNPQIRGFIIEKDTPGYETSV 279
G + ++RG TP T+V
Sbjct: 95 --GADHRRLRGLATHPFTPRRITAV 117
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 171 AGSDVANMQTRAKYDPSSN--SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIR 228
AGS++ QT+AKY S I++G K+ A + + + H + ++
Sbjct: 78 AGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELG 137
Query: 229 GFIIEKD-TPGAPLADLCILWA-KCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGL 286
G ++ TPG C W K +D HG Q Y+ +VI G G+
Sbjct: 138 GTVLTAHLTPGHTRG--CTTWTMKLKD--HGKQ---------------YQ-AVIIGSIGV 177
Query: 287 RASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYM 346
G +DN+ + +A YK +L S R I LG+ F + Y+
Sbjct: 178 NP---GYKLVDNITYPK-----IAEDYKHSIKVLESMRCDI---FLGSHAGMFDLKNKYV 226
Query: 347 LDRVQFNKPLA 357
L N P
Sbjct: 227 LLSKGQNNPFV 237
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 196 SKTWISSAPLADLCILWAKCEDPTHGPQ-NPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
K+WI+ PLA L + +A+ + + RG + TP P+ D + + + D
Sbjct: 46 EKSWIARTPLALLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLD- 104
Query: 255 THGPQNPQIRGFIIEKDTPGYETSV 279
G + ++RG TP T+V
Sbjct: 105 --GADHRRLRGLATHPFTPRRITAV 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,647,376
Number of Sequences: 62578
Number of extensions: 556386
Number of successful extensions: 1277
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 93
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)