Query psy9220
Match_columns 464
No_of_seqs 119 out of 1372
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:59:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 5.8E-73 1.3E-77 549.5 24.3 361 26-448 36-398 (398)
2 KOG0140|consensus 100.0 4.4E-71 9.6E-76 528.2 29.5 379 24-461 25-405 (408)
3 KOG0141|consensus 100.0 6.6E-69 1.4E-73 513.6 28.0 378 25-460 39-419 (421)
4 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.4E-64 3E-69 523.3 46.1 384 15-463 1-385 (386)
5 KOG0138|consensus 100.0 1.1E-65 2.5E-70 489.8 28.5 389 13-464 42-430 (432)
6 PRK03354 crotonobetainyl-CoA d 100.0 2.9E-61 6.2E-66 497.7 43.6 374 23-460 1-377 (380)
7 PLN02519 isovaleryl-CoA dehydr 100.0 5E-61 1.1E-65 499.9 44.7 378 23-461 22-403 (404)
8 PLN02526 acyl-coenzyme A oxida 100.0 6.5E-61 1.4E-65 500.3 45.2 378 23-464 25-402 (412)
9 cd01157 MCAD Medium chain acyl 100.0 4.4E-61 9.6E-66 495.4 43.4 375 27-460 1-377 (378)
10 cd01156 IVD Isovaleryl-CoA deh 100.0 6.4E-61 1.4E-65 493.7 44.0 373 27-460 2-376 (376)
11 PRK12341 putative acyl-CoA deh 100.0 5.9E-61 1.3E-65 495.4 43.8 374 23-460 1-378 (381)
12 cd01162 IBD Isobutyryl-CoA deh 100.0 9.6E-61 2.1E-65 492.7 43.8 371 27-460 1-374 (375)
13 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 8.6E-61 1.9E-65 492.6 42.7 368 27-457 1-370 (372)
14 cd01160 LCAD Long chain acyl-C 100.0 1.7E-60 3.7E-65 489.9 42.7 369 30-459 2-372 (372)
15 TIGR03203 pimD_small pimeloyl- 100.0 1.4E-60 3E-65 492.5 40.6 369 26-460 3-377 (378)
16 PTZ00461 isovaleryl-CoA dehydr 100.0 2.6E-60 5.7E-65 495.4 43.0 371 25-460 35-407 (410)
17 cd01161 VLCAD Very long chain 100.0 3.4E-60 7.4E-65 494.3 43.6 392 9-460 9-406 (409)
18 cd01158 SCAD_SBCAD Short chain 100.0 1.1E-58 2.3E-63 476.2 42.6 370 30-460 2-373 (373)
19 PRK09463 fadE acyl-CoA dehydro 100.0 4.3E-58 9.3E-63 503.8 42.7 382 15-454 66-466 (777)
20 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.5E-57 3.3E-62 472.2 41.6 372 31-460 3-394 (394)
21 TIGR03204 pimC_large pimeloyl- 100.0 1.9E-56 4.1E-61 464.3 43.3 372 25-461 2-395 (395)
22 PRK13026 acyl-CoA dehydrogenas 100.0 9.1E-57 2E-61 491.8 42.6 378 16-452 66-463 (774)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.3E-56 2.7E-61 464.6 41.1 378 26-463 4-391 (393)
24 KOG0137|consensus 100.0 4.6E-57 9.9E-62 463.6 27.5 383 19-456 68-456 (634)
25 cd01153 ACAD_fadE5 Putative ac 100.0 9.9E-55 2.1E-59 453.0 41.1 361 35-458 2-406 (407)
26 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.5E-55 5.4E-60 453.4 36.2 363 30-460 2-380 (380)
27 PLN02636 acyl-coenzyme A oxida 100.0 3.2E-54 7E-59 471.6 39.8 381 23-460 57-485 (686)
28 PLN02876 acyl-CoA dehydrogenas 100.0 5E-54 1.1E-58 482.7 41.4 377 25-460 400-818 (822)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 1.4E-53 3.1E-58 462.4 40.2 391 10-462 30-482 (622)
30 cd01163 DszC Dibenzothiophene 100.0 2.5E-52 5.5E-57 430.3 34.6 352 38-460 3-373 (377)
31 PLN02312 acyl-CoA oxidase 100.0 8.3E-52 1.8E-56 451.7 39.9 370 30-460 63-487 (680)
32 cd01154 AidB Proteins involved 100.0 4E-50 8.7E-55 419.8 39.9 353 39-459 38-417 (418)
33 cd01159 NcnH Naphthocyclinone 100.0 1.9E-49 4.1E-54 408.1 28.5 345 38-460 3-370 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 4.7E-48 1E-52 411.5 37.7 330 61-462 88-443 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.4E-47 5.2E-52 384.5 38.4 324 30-456 2-327 (327)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 1.5E-46 3.3E-51 408.8 32.9 299 104-460 90-431 (646)
37 KOG1469|consensus 100.0 6.8E-48 1.5E-52 363.3 18.5 334 66-458 34-380 (392)
38 cd01150 AXO Peroxisomal acyl-C 100.0 9.2E-46 2E-50 402.3 32.2 316 87-460 80-444 (610)
39 PTZ00457 acyl-CoA dehydrogenas 100.0 1.4E-44 3.1E-49 382.6 36.2 297 67-451 58-362 (520)
40 PLN02443 acyl-coenzyme A oxida 100.0 4.5E-43 9.7E-48 382.3 33.2 294 109-460 99-440 (664)
41 KOG0135|consensus 100.0 1.3E-32 2.8E-37 281.0 21.2 315 88-461 104-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 99.9 1.7E-25 3.6E-30 236.3 26.8 241 128-426 128-391 (477)
43 KOG0136|consensus 99.9 4.4E-24 9.6E-29 223.3 18.5 297 106-460 108-448 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 8E-22 1.7E-26 176.3 18.1 148 312-459 3-150 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.7 6E-17 1.3E-21 138.2 8.8 112 28-140 1-113 (113)
46 COG2368 Aromatic ring hydroxyl 99.6 7.8E-13 1.7E-17 136.1 23.8 241 128-425 132-398 (493)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.5 6.1E-14 1.3E-18 123.9 12.8 123 325-447 1-133 (134)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.5 9.3E-12 2E-16 132.1 25.4 236 127-421 136-398 (519)
49 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.6E-13 5.6E-18 100.3 6.8 50 165-216 3-52 (52)
50 PF11794 HpaB_N: 4-hydroxyphen 98.9 1.3E-08 2.8E-13 99.7 12.1 128 127-307 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 94.9 0.7 1.5E-05 43.9 13.4 72 354-425 42-118 (205)
52 PTZ00457 acyl-CoA dehydrogenas 84.7 9.8 0.00021 41.4 11.7 87 337-426 416-503 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 83.5 1 2.2E-05 39.0 2.9 35 108-142 91-125 (125)
54 KOG0137|consensus 64.0 74 0.0016 34.9 11.2 70 352-421 533-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 28.5 5.1E+02 0.011 29.9 11.3 102 352-460 559-662 (777)
No 1
>KOG0139|consensus
Probab=100.00 E-value=5.8e-73 Score=549.54 Aligned_cols=361 Identities=31% Similarity=0.527 Sum_probs=349.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCc
Q psy9220 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSG 104 (464)
Q Consensus 26 ~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~ 104 (464)
.|++.+..+.+.+++|+++.+.|+..+.|++..+| ..+++.+.++|++++.+|+ |||.|.++.....++|||++.|++
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~-~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~s 114 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYP-ASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDAS 114 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCC-HHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCcc
Confidence 58999999999999999999999999999999999 8999999999999999998 999999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEE
Q psy9220 105 YRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKY 184 (464)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~ 184 (464)
+++++.+|+.+...+|..+|+++||++|+|.+ .|+.+++||+|||++|| |+..+.|+|++
T Consensus 115 v~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGS-------------------Da~A~~T~Ak~ 174 (398)
T KOG0139|consen 115 VGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGS-------------------DAFALKTTAKK 174 (398)
T ss_pred ceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCc-------------------chHHhhhhHhh
Confidence 99999999999999999999999999887765 58889999999999999 99999999999
Q ss_pred eCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeE
Q psy9220 185 DPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264 (464)
Q Consensus 185 ~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
+ ++.|+|||.|.||||+..|++++|+|.+++. .++.+++
T Consensus 175 ~--Gd~~viNGsKmWItN~~~A~~~lVfan~d~~---------------------------------------~~~Kgit 213 (398)
T KOG0139|consen 175 D--GDDYVINGSKMWITNAGEADWFLVFANADPS---------------------------------------KGYKGIT 213 (398)
T ss_pred c--CCeEEEecceeeecCCcccceEEEEEecChh---------------------------------------hccCcee
Confidence 9 8999999999999999999999999998544 5678999
Q ss_pred EEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMAR 343 (464)
Q Consensus 265 ~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~ 343 (464)
+|+||+++||+++....+++|||++.++.++|+||+||++++||+++ ||++....|+.+|+.++++.+|.++.||+.++
T Consensus 214 ~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI 293 (398)
T KOG0139|consen 214 CFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETI 293 (398)
T ss_pred EEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhh
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy9220 344 SYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNG 423 (464)
Q Consensus 344 ~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g 423 (464)
.|+++|.+||++|.++|.+|+++|+|.+++|++|+++|+++++.|++.+...+++|||+++++.|..++++|+|++||.|
T Consensus 294 ~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~G 373 (398)
T KOG0139|consen 294 PYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVG 373 (398)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHhhhccceeccChHH
Q psy9220 424 ISDEYHVIRHMNNLEVVNTYEGTSD 448 (464)
Q Consensus 424 ~~~~~~l~r~~rda~~~~~~~G~~~ 448 (464)
|+++.|.+|+|||++...||+|+++
T Consensus 374 yt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 374 YTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred ccccccHHHHhhhceeeeeecCCCC
Confidence 9999999999999999999999863
No 2
>KOG0140|consensus
Probab=100.00 E-value=4.4e-71 Score=528.24 Aligned_cols=379 Identities=29% Similarity=0.450 Sum_probs=364.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcC
Q psy9220 24 SSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVD 102 (464)
Q Consensus 24 ~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~ 102 (464)
++.|+++++++.+.+++|..+++.|...++|+.+.+| .+++++..++||.+..+|+ |||.|++..+.+.+.|+|+++|
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P-~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGC 103 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFP-WEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGC 103 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCc-HHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccc
Confidence 5779999999999999999999999999999999999 9999999999999999999 9999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEE
Q psy9220 103 SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRA 182 (464)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A 182 (464)
.++...+..|+ ++++++..+|+++||++||++++...+++++++|||++|| |+..+.|+|
T Consensus 104 tg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGS-------------------DvagikTka 163 (408)
T KOG0140|consen 104 TGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGS-------------------DVAGIKTKA 163 (408)
T ss_pred hhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCc-------------------chhhhhhhh
Confidence 99987666664 7889999999999999999999999999999999999999 999999999
Q ss_pred EEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 183 KYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 183 ~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
++. +|.|+|||.|.||||+++|+|++|+||++++. +.|....
T Consensus 164 ~Kk--GDeYiiNGsKawItg~G~anwyfVlaRtd~~p------------------------------------k~p~~Ka 205 (408)
T KOG0140|consen 164 EKK--GDEYIINGSKAWITGAGHANWYFVLARTDPDP------------------------------------KTPAGKA 205 (408)
T ss_pred hhc--CCEEEEcCceeeeecCCccceEEEEEecCCCC------------------------------------CCCCCcc
Confidence 999 99999999999999999999999999998652 2355678
Q ss_pred eEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy9220 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSM 341 (464)
Q Consensus 263 ~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 341 (464)
++.|+|+.|+||++.......+|.|.+++..++|+||+||.+|+||.++ ||++.+..++..|..+|+.++|+|++|+++
T Consensus 206 ft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~ 285 (408)
T KOG0140|consen 206 FTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDE 285 (408)
T ss_pred eEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy9220 342 ARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGG 421 (464)
Q Consensus 342 a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 421 (464)
+.+|+.+|++||+||++||.+|..||+|.+.++.+|.++++++..+|++......++++|.++++.+.+++..++|++||
T Consensus 286 a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~at~AvQifGG 365 (408)
T KOG0140|consen 286 ATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAATNAVQIFGG 365 (408)
T ss_pred HHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred ccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCC
Q psy9220 422 NGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGI 461 (464)
Q Consensus 422 ~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~ 461 (464)
+||.+++|+++++||++.+++|||++++++..|+|.++.-
T Consensus 366 ~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 366 NGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred CCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 3
>KOG0141|consensus
Probab=100.00 E-value=6.6e-69 Score=513.55 Aligned_cols=378 Identities=31% Similarity=0.486 Sum_probs=363.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCC-hHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcC
Q psy9220 25 SLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSD-VRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVD 102 (464)
Q Consensus 25 ~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~ 102 (464)
..|++|++.+|+.+++|+++++.|...+.|+.+.++ .+++|+++.++|++|++.|+ |||.|.++.....++||++++.
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999983 48999999999999999998 9999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEE
Q psy9220 103 SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRA 182 (464)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A 182 (464)
++++..|..|+.+++.-|.+.|+++|+++|||++.+|+-++++|+|||++|| |+..+.+.|
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGS-------------------Dvv~mK~~A 179 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGS-------------------DVVSMKLKA 179 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCC-------------------ccceeeeec
Confidence 9999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 183 KYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 183 ~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
+++ +++|+|||.|.||||++.||.++|.|+++.... +..++
T Consensus 180 ek~--g~~yiLNGsK~witNG~~advliVyAkTd~~a~-------------------------------------~~~hG 220 (421)
T KOG0141|consen 180 EKK--GDDYILNGSKFWITNGPDADVLIVYAKTDHSAV-------------------------------------PPSHG 220 (421)
T ss_pred eec--CCcEEecCcEEEEecCCCCcEEEEEEecCCCCC-------------------------------------CCcCc
Confidence 999 999999999999999999999999999974421 33468
Q ss_pred eEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy9220 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSM 341 (464)
Q Consensus 263 ~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 341 (464)
+++|||+...||++..+..+++|||++.++++.|+|++||.++++|..+ |+++++.-++..|+.+++..+|++++++++
T Consensus 221 It~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~ 300 (421)
T KOG0141|consen 221 ITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDE 300 (421)
T ss_pred eEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy9220 342 ARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGG 421 (464)
Q Consensus 342 a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 421 (464)
+..|+++|++||++++.||.+|.++|+|++.+.++|+++|.+++..|++.-.....+.+++|+++.+-+|+..++|.+||
T Consensus 301 ~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~tqVald~iQ~~GG 380 (421)
T KOG0141|consen 301 TFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKATQVALDAIQCLGG 380 (421)
T ss_pred hhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhhHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred ccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 422 NGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 422 ~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
.||..++|+.|++||++.+.+..||+++.+..|+|.+..
T Consensus 381 nGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~ 419 (421)
T KOG0141|consen 381 NGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNK 419 (421)
T ss_pred cccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999854
No 4
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.4e-64 Score=523.31 Aligned_cols=384 Identities=61% Similarity=1.023 Sum_probs=358.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHH
Q psy9220 15 FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGL 93 (464)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~ 93 (464)
|||.+..+|++.+++++.++++.+++|+++++.|...+.++.+.+| .++|+++.+.||+++ +|+ |||.|+++.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~ 78 (386)
T cd01151 1 FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFD-RKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGL 78 (386)
T ss_pred CCCccccccccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCC-HHHHHHHHHCCCCcc-CccccCCCCCCHHHHHH
Confidence 5777777788789999999999999999999999888888888899 999999999999999 998 9999999999999
Q ss_pred HHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCC
Q psy9220 94 VAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGS 173 (464)
Q Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~ 173 (464)
++|+|++.|.++++.+.+|..+++..+..+++++|+++|++++++|++++++++|||++||
T Consensus 79 v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gs------------------- 139 (386)
T cd01151 79 IAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGS------------------- 139 (386)
T ss_pred HHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC-------------------
Confidence 9999999999988777777666667788999999999999999999999999999999998
Q ss_pred CCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhccc
Q psy9220 174 DVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253 (464)
Q Consensus 174 d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (464)
|+..+.|+|+++ ++||+|||+|.|||+++.||+++|.|+++++
T Consensus 140 d~~~~~t~A~~~--~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~----------------------------------- 182 (386)
T cd01151 140 DPGGMETRARKD--GGGYKLNGSKTWITNSPIADVFVVWARNDET----------------------------------- 182 (386)
T ss_pred ChhhCeEEEEEE--CCEEEEEEEEEeecCCCcCCEEEEEEEECCC-----------------------------------
Confidence 888999999998 8999999999999999999999999998533
Q ss_pred CCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccccChHHHHHhhhHHHHHHHHHHHH
Q psy9220 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLG 333 (464)
Q Consensus 254 ~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~g~~~~~~~l~~~r~~~aa~~~G 333 (464)
.++.+|+||++.||+++.+.|+++|++++++++++|+||+||++++++...|+......+...|+.+++.++|
T Consensus 183 -------~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~~aa~~lG 255 (386)
T cd01151 183 -------GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYGIAWGALG 255 (386)
T ss_pred -------CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1578899999999999999999999999999999999999999999987558877788889999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy9220 334 AAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIAR 413 (464)
Q Consensus 334 ~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~ 413 (464)
+++++++.+++|+++|++||+||+++|.+|+++++|.++++++|++++++++.+|.+......++++|.++++.+.++++
T Consensus 256 ~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~ 335 (386)
T cd01151 256 AAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIAR 335 (386)
T ss_pred HHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765667789999999999999999
Q ss_pred HHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCCCC
Q psy9220 414 NARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQA 463 (464)
Q Consensus 414 ~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~~~ 463 (464)
.++|++||.||.++++++|+|||++...+++|++++++..|++.++|++.
T Consensus 336 ~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~~~ 385 (386)
T cd01151 336 TAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGIQA 385 (386)
T ss_pred HHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999854
No 5
>KOG0138|consensus
Probab=100.00 E-value=1.1e-65 Score=489.79 Aligned_cols=389 Identities=61% Similarity=1.030 Sum_probs=373.3
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHH
Q psy9220 13 TKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGG 92 (464)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~ 92 (464)
.+| |.|+..++..|++|+..+++.+|+++++.+.|...+..+.+.|+ ++++.++...|++|.++..||+.|++...+.
T Consensus 42 P~f-~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~-~~i~pemGsmGvlG~tikGYGCaG~S~vayg 119 (432)
T KOG0138|consen 42 PEF-WQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFD-REIIPEMGSMGVLGPTIKGYGCAGVSSVAYG 119 (432)
T ss_pred Ccc-ccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCC-hhhhhhhhccccccCcccCcCCCchHHHHHH
Confidence 346 88999999999999999999999999999999999999999999 9999999999999999988999999999999
Q ss_pred HHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCC
Q psy9220 93 LVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAG 172 (464)
Q Consensus 93 ~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~ 172 (464)
.+..|+.|+|+++...+++|+++++..|..+|+++||++|||.+++|++++||++|||++||
T Consensus 120 l~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GS------------------ 181 (432)
T KOG0138|consen 120 LLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGS------------------ 181 (432)
T ss_pred HHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcc
Q psy9220 173 SDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCE 252 (464)
Q Consensus 173 ~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (464)
|.+.+.|+|++++.+..|.|||.|+||+|++.||+++|+||++-++
T Consensus 182 -dpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n--------------------------------- 227 (432)
T KOG0138|consen 182 -DPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDN--------------------------------- 227 (432)
T ss_pred -CcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCC---------------------------------
Confidence 9999999999995444699999999999999999999999997431
Q ss_pred cCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccccChHHHHHhhhHHHHHHHHHHH
Q psy9220 253 DATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVL 332 (464)
Q Consensus 253 ~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~g~~~~~~~l~~~r~~~aa~~~ 332 (464)
.+.-|||+++.+|.+...+.+++++|.+.++.+-.|||+||+|++|....++.-.+..++.+|+++|+..+
T Consensus 228 ---------~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~l 298 (432)
T KOG0138|consen 228 ---------KIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGAL 298 (432)
T ss_pred ---------ceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhc
Confidence 57889999999999999999999999999999999999999999997766777788899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q psy9220 333 GAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIA 412 (464)
Q Consensus 333 G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~ 412 (464)
|+++.|++.+.+|..+|+|||+|++.+|.+|.+|++|..++...-.++++..++.|+++..+..+++.|.+.|..+++++
T Consensus 299 Gase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiA 378 (432)
T KOG0138|consen 299 GASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIA 378 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCCCCC
Q psy9220 413 RNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464 (464)
Q Consensus 413 ~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~~~~ 464 (464)
+.+.+++||.|+.+++.+.|++-|+..+.+|||+.++|..+++|.++|+++|
T Consensus 379 r~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGia~F 430 (432)
T KOG0138|consen 379 RQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIAAF 430 (432)
T ss_pred HHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999987
No 6
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-61 Score=497.74 Aligned_cols=374 Identities=21% Similarity=0.298 Sum_probs=340.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhc-CCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHh
Q psy9220 23 ISSLLTQEEKLLRDSVKSFCDAVL-HPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIER 100 (464)
Q Consensus 23 ~~~~l~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~ 100 (464)
|++.++++++.+++.+++|+++++ .+...+.++.+.+| .++|+.|++.||+++.+|+ |||.|+++.+...+++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~ 79 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYP-ERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGR 79 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCC-HHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 355689999999999999999875 56556677788899 9999999999999999998 99999999999999999999
Q ss_pred cCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCcee
Q psy9220 101 VDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQT 180 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t 180 (464)
+|+++++.+.++. ....+..+++++||++||+++++|+.+.++++|||..|| |...+.|
T Consensus 80 ~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs-------------------~~~~~~t 138 (380)
T PRK03354 80 LGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGS-------------------DVGSLKT 138 (380)
T ss_pred cCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------chhhCEE
Confidence 9998875555442 234677889999999999999999999999999999998 8888999
Q ss_pred EEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCC
Q psy9220 181 RAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN 260 (464)
Q Consensus 181 ~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
+|+++ +|||+|||+|.|+|++.+|||++|+|+++++ ++.
T Consensus 139 ~a~~~--~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~---------------------------------------~~~ 177 (380)
T PRK03354 139 TYTRR--NGKVYLNGSKCFITSSAYTPYIVVMARDGAS---------------------------------------PDK 177 (380)
T ss_pred EEEEe--CCEEEEeeEEEEEcCCCcCCEEEEEEEcCCC---------------------------------------CCC
Confidence 99998 8999999999999999999999999997432 112
Q ss_pred CCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy9220 261 PQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCF 339 (464)
Q Consensus 261 ~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al 339 (464)
..+++|+||++.+|+++. .|+++|+++++++++.|+||+||+++++|.++ |+......+...|+.+++.++|++++++
T Consensus 178 ~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al 256 (380)
T PRK03354 178 PVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAF 256 (380)
T ss_pred CceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999986 68999999999999999999999999999877 8877777788899999999999999999
Q ss_pred HHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9220 340 SMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDML 419 (464)
Q Consensus 340 ~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~ 419 (464)
+.+++|+++|++||+||+++|.+|+++++|.++++++|+++++++...+.+......++++|.++++.+.++++.+++++
T Consensus 257 ~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~~~~~~ 336 (380)
T PRK03354 257 EDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVL 336 (380)
T ss_pred HHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998887665567889999999999999999999999
Q ss_pred CcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 420 GGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 420 Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
||.||.++++++|+|||++...+++|++++++..|+|.+++
T Consensus 337 Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 337 GGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred cCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998763
No 7
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=5e-61 Score=499.89 Aligned_cols=378 Identities=26% Similarity=0.425 Sum_probs=351.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHH--HHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q psy9220 23 ISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRA--IYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIE 99 (464)
Q Consensus 23 ~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e--~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~ 99 (464)
-++.+++++..+++.+++|+++.+.|...+.|+.+.+| .+ +|+.|++.||+++.+|+ |||.|+++.+...++|+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p-~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la 100 (404)
T PLN02519 22 SSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFP-KDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEIS 100 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCC-chHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHh
Confidence 45668999999999999999999999888888888888 55 79999999999999998 9999999999999999999
Q ss_pred hcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCce
Q psy9220 100 RVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQ 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (464)
+.|+++++.+.+|....+..+..+++++||++|+|++++|+.++|+++|||.+|| |...+.
T Consensus 101 ~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gs-------------------d~~~~~ 161 (404)
T PLN02519 101 RASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGS-------------------DVVSMK 161 (404)
T ss_pred hhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCC-------------------Ccccce
Confidence 9999998877777666666788899999999999999999999999999999988 888899
Q ss_pred eEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCC
Q psy9220 180 TRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259 (464)
Q Consensus 180 t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
|+|+++ +|||+|||+|.|+|+++.||+++|.|++++. ++
T Consensus 162 t~a~~~--~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~---------------------------------------~~ 200 (404)
T PLN02519 162 CKAERV--DGGYVLNGNKMWCTNGPVAQTLVVYAKTDVA---------------------------------------AG 200 (404)
T ss_pred EEEEEe--CCEEEEEeEEEeecCCCcCCEEEEEEEeCCC---------------------------------------CC
Confidence 999998 8899999999999999999999999998643 12
Q ss_pred CCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy9220 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFC 338 (464)
Q Consensus 260 ~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~a 338 (464)
..++++|+||.+.|||++.+.|+++|+++++++++.|+||+||++++||..+ |+......++..|+.+++.++|+++++
T Consensus 201 ~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~a 280 (404)
T PLN02519 201 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQAC 280 (404)
T ss_pred CCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999999999999877 888788888999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 339 FSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDM 418 (464)
Q Consensus 339 l~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~ 418 (464)
++.+++|+++|.+||+|++++|.+|+++++|.++++++++++++++..++.+.......+.+|+++++.+.+++..++++
T Consensus 281 l~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~~i 360 (404)
T PLN02519 281 LDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQC 360 (404)
T ss_pred HHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876556678889999999999999999999
Q ss_pred hCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCC
Q psy9220 419 LGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGI 461 (464)
Q Consensus 419 ~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~ 461 (464)
+||.||+++++++|+|||++...+++|++++++..|++.+++.
T Consensus 361 ~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 361 LGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred hCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999874
No 8
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=6.5e-61 Score=500.30 Aligned_cols=378 Identities=37% Similarity=0.590 Sum_probs=350.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q psy9220 23 ISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVD 102 (464)
Q Consensus 23 ~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~~v~e~l~~~~ 102 (464)
|+..++++++.+++.+++|+++.+.|...+.+....+| .++|+++.+.||+++.+++|||.|+++.+...++|++++.|
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p-~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~ 103 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFP-FHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVD 103 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCC-HHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhC
Confidence 66568999999999999999999998877767777899 99999999999999999449999999999999999999999
Q ss_pred CchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEE
Q psy9220 103 SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRA 182 (464)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A 182 (464)
.+.+..+.+|..+++..+..+++++||++|++++++|+.++++++|||+.|| |+..+.|+|
T Consensus 104 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs-------------------d~~~~~t~a 164 (412)
T PLN02526 104 ASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGS-------------------DASSLNTTA 164 (412)
T ss_pred chHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC-------------------ChhhCeeEE
Confidence 9887666677666666788999999999999999999999999999999888 888899999
Q ss_pred EEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 183 KYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 183 ~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
+++ +|||+|||+|.|||++..||+++|.++++++ .+
T Consensus 165 ~~~--~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~------------------------------------------~~ 200 (412)
T PLN02526 165 TKV--EGGWILNGQKRWIGNSTFADVLVIFARNTTT------------------------------------------NQ 200 (412)
T ss_pred EEE--CCEEEEEEEEeeecCCCccCEEEEEEEeCCC------------------------------------------CC
Confidence 998 8899999999999999999999999998533 14
Q ss_pred eEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9220 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMA 342 (464)
Q Consensus 263 ~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a 342 (464)
+++|+||.+.|||++.+.|+++|++++++++++|+||+||++++|+..+++......+...|+.+++.++|+++++++.+
T Consensus 201 ~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a 280 (412)
T PLN02526 201 INGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMC 280 (412)
T ss_pred eEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999977667777778899999999999999999999999
Q ss_pred HHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q psy9220 343 RSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGN 422 (464)
Q Consensus 343 ~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~ 422 (464)
++|+++|++||+||+++|.+|+++++|.++++++|++++++++.+|.+......++++|.++++.+.++++.++|++||.
T Consensus 281 ~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~ 360 (412)
T PLN02526 281 HRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGN 360 (412)
T ss_pred HHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999887655566789999999999999999999999999
Q ss_pred cccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCCCCC
Q psy9220 423 GISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464 (464)
Q Consensus 423 g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~~~~ 464 (464)
||.++++++|+|||++...+++|++++++..|+|.++|++++
T Consensus 361 G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~~~~ 402 (412)
T PLN02526 361 GILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASF 402 (412)
T ss_pred cccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999998753
No 9
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=4.4e-61 Score=495.40 Aligned_cols=375 Identities=28% Similarity=0.440 Sum_probs=342.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCch
Q psy9220 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGY 105 (464)
Q Consensus 27 l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~ 105 (464)
++++++.+++.+++|+++.+.|...+.|+.+.+| .++|+.|++.||+++.+|+ |||.|+++.+...++|++++.|.++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~ 79 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYP-WPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGV 79 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCC-HHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHH
Confidence 4688899999999999999999888888888899 9999999999999999998 9999999999999999999999887
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
++.+..+ .+....+..+++++||++||+++.+|+.++++++|||..|| |...+.|+|+++
T Consensus 80 ~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs-------------------~~~~~~t~a~~~ 139 (378)
T cd01157 80 QTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGS-------------------DVAGIKTKAEKK 139 (378)
T ss_pred HHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------chhcCeEEEEEc
Confidence 6544333 23444566789999999999999999999999999999998 888889999998
Q ss_pred CCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEE
Q psy9220 186 PSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265 (464)
Q Consensus 186 ~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
++||+|||+|.|||+++.||+++|.|+++++.. ++..+++++
T Consensus 140 --~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~------------------------------------~~~~~~~~~ 181 (378)
T cd01157 140 --GDEYIINGQKMWITNGGKANWYFLLARSDPDPK------------------------------------CPASKAFTG 181 (378)
T ss_pred --CCEEEEeeEEEeecCCccCCEEEEEEEeCCccc------------------------------------CCCCCceEE
Confidence 889999999999999999999999999753310 012346889
Q ss_pred EEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344 (464)
Q Consensus 266 flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 344 (464)
|+||++.||+++.+.|.++|+++++++++.|+||+||++++|+..+ |+......+...|+.+++.++|+++++++.+++
T Consensus 182 ~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~ 261 (378)
T cd01157 182 FIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATK 261 (378)
T ss_pred EEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 888888888899999999999999999999999
Q ss_pred HhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy9220 345 YMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGI 424 (464)
Q Consensus 345 ~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~ 424 (464)
|+++|++||+||+++|.+|+++++|.++++++|++++++++..|.+......++++|.++++.+.++++.+++++||.||
T Consensus 262 ~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~ 341 (378)
T cd01157 262 YALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAVQIFGGNGF 341 (378)
T ss_pred HHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999888765555668899999999999999999999999999
Q ss_pred cCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 425 SDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 425 ~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
.++++++|+|||++...+++|++++++..|++.++|
T Consensus 342 ~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 342 NSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999876
No 10
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=6.4e-61 Score=493.66 Aligned_cols=373 Identities=30% Similarity=0.488 Sum_probs=347.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCch
Q psy9220 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGY 105 (464)
Q Consensus 27 l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~ 105 (464)
++++++.+++.+++|+++.+.|...+.++.+.+| .++|+.+++.||+++.+|+ |||.|+++.+...++++|++.|+++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~-~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~ 80 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFP-RDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSV 80 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCC-HHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhH
Confidence 5789999999999999999999888888888899 9999999999999999998 9999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
++.+..|...+...+..+++++|+++|++++++|++++++++|||.+|| |...++++|+++
T Consensus 81 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs-------------------~~~~~~t~a~~~ 141 (376)
T cd01156 81 ALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGS-------------------DVVSMKLRAEKK 141 (376)
T ss_pred HHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------ChhhCeEEEEEe
Confidence 8777777655566788999999999999999999999999999999988 888899999998
Q ss_pred CCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEE
Q psy9220 186 PSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265 (464)
Q Consensus 186 ~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
++||+|||+|.|||+++.||+++|.|+++++ +..+++++
T Consensus 142 --~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~---------------------------------------~~~~~~~~ 180 (376)
T cd01156 142 --GDRYVLNGSKMWITNGPDADTLVVYAKTDPS---------------------------------------AGAHGITA 180 (376)
T ss_pred --CCEEEEEEEEEEecCCCcCCEEEEEEEeCCC---------------------------------------CCCCceEE
Confidence 8999999999999999999999999997643 11236789
Q ss_pred EEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344 (464)
Q Consensus 266 flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 344 (464)
|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+..+ |+......+...|+.+++.++|+++++++.+++
T Consensus 181 ~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~ 260 (376)
T cd01156 181 FIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIP 260 (376)
T ss_pred EEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 888888889999999999999999999999999
Q ss_pred HhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy9220 345 YMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGI 424 (464)
Q Consensus 345 ~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~ 424 (464)
|+++|++||+||+++|.+|+++++|..+++++|++++++++.+|.+......++.+|.++++.+.++++.+++++||.||
T Consensus 261 ~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~ 340 (376)
T cd01156 261 YAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGNGY 340 (376)
T ss_pred HHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999998876555678889999999999999999999999999
Q ss_pred cCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 425 SDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 425 ~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
+++++++|+|||++...+++|++++++..|++.+++
T Consensus 341 ~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 341 INDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred ccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999998764
No 11
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-61 Score=495.42 Aligned_cols=374 Identities=23% Similarity=0.278 Sum_probs=340.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcC-CchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHh
Q psy9220 23 ISSLLTQEEKLLRDSVKSFCDAVLH-PKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIER 100 (464)
Q Consensus 23 ~~~~l~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~ 100 (464)
|++.+++++..+++.+++|+++.+. +...+.++.+.+| .++|+.+++.||+++.+|+ |||.|+++.+...++|++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~ 79 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYP-REFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK 79 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCC-HHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 4556899999999999999999886 4566778888899 9999999999999999998 99999999999999999999
Q ss_pred cCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHH-hcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCce
Q psy9220 101 VDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPEL-AKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQ 179 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l-~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (464)
.|.+. +++ +...+...+..+|+++||++|++++ .+|+.+.++++|||+.|| |+..++
T Consensus 80 ~~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gs-------------------d~~~~~ 137 (381)
T PRK12341 80 CGAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGS-------------------DNNSAT 137 (381)
T ss_pred cChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCC-------------------chhhCe
Confidence 99873 232 3334455678899999999999998 599999999999999999 888999
Q ss_pred eEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCC
Q psy9220 180 TRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259 (464)
Q Consensus 180 t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
|+|+++ +|||+|||+|+|||+++.||+++|+|++++.. ..
T Consensus 138 t~a~~~--~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~~--------------------------------------~~ 177 (381)
T PRK12341 138 TTYTRK--NGKVYLNGQKTFITGAKEYPYMLVLARDPQPK--------------------------------------DP 177 (381)
T ss_pred eEEEEe--CCEEEEEeEEEEEcCCccCCEEEEEEEcCCCC--------------------------------------CC
Confidence 999998 88999999999999999999999999975331 11
Q ss_pred CCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy9220 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFC 338 (464)
Q Consensus 260 ~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~a 338 (464)
...+++|+||++.|||++. .|+++|++++++++++|+||+||++++||.++ |+......++..|+.+++.++|+++++
T Consensus 178 ~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~a 256 (381)
T PRK12341 178 KKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECA 256 (381)
T ss_pred CCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2367899999999999984 68999999999999999999999999999877 888777788899999999999999999
Q ss_pred HHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 339 FSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDM 418 (464)
Q Consensus 339 l~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~ 418 (464)
++.+++|+++|++||+||.++|.+|+++++|.++++++|++++++++..+++.+....++++|.++++.+.++++.++++
T Consensus 257 l~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~~~~~ 336 (381)
T PRK12341 257 FEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDAIQI 336 (381)
T ss_pred HHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876666778999999999999999999999
Q ss_pred hCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 419 LGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 419 ~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
+||.||.++++++|+|||++...+++|++++++..|++.+++
T Consensus 337 ~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 337 MGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred hcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999876
No 12
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=9.6e-61 Score=492.75 Aligned_cols=371 Identities=27% Similarity=0.435 Sum_probs=345.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCch
Q psy9220 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGY 105 (464)
Q Consensus 27 l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~ 105 (464)
+++++..+++.+++|+++.+.|...+.|..+.+| .++|+.+++.||+++.+|+ |||.|+++.+...+++++++.|+++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p-~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~ 79 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFP-VDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVST 79 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCC-HHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhH
Confidence 4788999999999999999999888888888999 9999999999999999998 9999999999999999999999998
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
++.+.+|. .....+..+++++|+++|++++.+|+.++++++|||.+|| |...+.++|+++
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gs-------------------d~~~~~t~a~~~ 139 (375)
T cd01162 80 AAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGS-------------------DAAALRTRAVRE 139 (375)
T ss_pred HHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCC-------------------ChhhCEEEEEEe
Confidence 86666664 4456678899999999999999999999999999999998 888899999998
Q ss_pred CCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEE
Q psy9220 186 PSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265 (464)
Q Consensus 186 ~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
++||+|||+|+|||+++.||+++|+|+++++ +..++++
T Consensus 140 --~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~----------------------------------------~~~~~~~ 177 (375)
T cd01162 140 --GDHYVLNGSKAFISGAGDSDVYVVMARTGGE----------------------------------------GPKGISC 177 (375)
T ss_pred --CCEEEEEEEEEEecCCCCCCEEEEEEEecCC----------------------------------------CCCceEE
Confidence 8899999999999999999999999997533 1135789
Q ss_pred EEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344 (464)
Q Consensus 266 flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 344 (464)
|+||++.||+++.+.|+++|+++++++++.||||+||.+++||.++ |+......+...|+.+++.++|+++++++.+++
T Consensus 178 ~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~ 257 (375)
T cd01162 178 FVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARA 257 (375)
T ss_pred EEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 888888888999999999999999999999999
Q ss_pred HhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy9220 345 YMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLD-TPEMISILKRNNCAKALDIARNARDMLGGNG 423 (464)
Q Consensus 345 ~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~-~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g 423 (464)
|+++|++||+||+++|.+|+++++|.+++++++++++++++.++++.+ ....++++|.++++.+.++++.+++++||.|
T Consensus 258 ~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g 337 (375)
T cd01162 258 YLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYG 337 (375)
T ss_pred HHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999987643 3556889999999999999999999999999
Q ss_pred ccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 424 ISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 424 ~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
|.++++++|+|||++...+++|++++++.++++.++|
T Consensus 338 ~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 338 YLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred cccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
No 13
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=8.6e-61 Score=492.58 Aligned_cols=368 Identities=26% Similarity=0.354 Sum_probs=338.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCch
Q psy9220 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGY 105 (464)
Q Consensus 27 l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~ 105 (464)
|++++..+++.+++|+++.+.|...+.++.+.+| +++|+.+.+.||+++.+|+ |||.|+++.+...++|++++.|.++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~-~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~ 79 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLD-RELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSM 79 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCC-HHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccH
Confidence 5778899999999999999999888888888899 9999999999999999998 9999999999999999999999998
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
+++... ..+.+..+..+++++|+++||+++.+|+.+.++++|||..|| |...+.|+|+++
T Consensus 80 ~~~~~~-~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gs-------------------d~~~~~t~a~~~ 139 (372)
T TIGR03207 80 SYVNLL-ASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGS-------------------DAARLRLRAERD 139 (372)
T ss_pred HHHHHh-hhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCc-------------------ChhhCEEEEEEe
Confidence 754333 234556678899999999999999999999999999999888 888999999998
Q ss_pred CCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEE
Q psy9220 186 PSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265 (464)
Q Consensus 186 ~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
++||+|||+|.|||++..||+++|+++++++. ....++++
T Consensus 140 --~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~--------------------------------------~~~~~~~~ 179 (372)
T TIGR03207 140 --GDDYVLNGEKTSISAADQADAAVVFARTGSEA--------------------------------------EGARGISA 179 (372)
T ss_pred --CCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCC--------------------------------------CCCCceEE
Confidence 88999999999999999999999999985431 11235789
Q ss_pred EEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344 (464)
Q Consensus 266 flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 344 (464)
|+||++.|||++. .|+++|++++++++++|+||+||++++++.++ |+......++..|+.+++.++|+++++++.+++
T Consensus 180 ~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~ 258 (372)
T TIGR03207 180 FLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWR 258 (372)
T ss_pred EEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 68999999999999999999999999999877 888888889999999999999999999999999
Q ss_pred HhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy9220 345 YMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGI 424 (464)
Q Consensus 345 ~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~ 424 (464)
|+++|++||+||+++|.+|+++++|.++++++|++++++++..+.+.+....++++|.++++.+.++++.++|++||.||
T Consensus 259 ~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~ 338 (372)
T TIGR03207 259 YVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGY 338 (372)
T ss_pred HHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999999999988765555678999999999999999999999999999
Q ss_pred cCcccHHHHHhhhccceeccChHHHHHHHHHHH
Q psy9220 425 SDEYHVIRHMNNLEVVNTYEGTSDIHALILGRA 457 (464)
Q Consensus 425 ~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~ 457 (464)
.++ +++|+|||++...+++|++++++.+|++.
T Consensus 339 ~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 339 DRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred CCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 999 99999999999999999999999999874
No 14
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.7e-60 Score=489.86 Aligned_cols=369 Identities=28% Similarity=0.414 Sum_probs=340.9
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhH
Q psy9220 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSM 108 (464)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~ 108 (464)
+++++++.+++|+++.+.|...+.|+.+.+| +++|++|++.||+++.+|+ |||.|+++.+...++|++++.+.+ ++.
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~ 79 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVP-REVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPG 79 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCC-HHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHH
Confidence 6778999999999999999888888888899 9999999999999999998 999999999999999999996544 556
Q ss_pred HHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCC
Q psy9220 109 YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188 (464)
Q Consensus 109 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~ 188 (464)
+.+|...+...+..+++++|+++|++++.+|+.++|+++|||.+|| |...+.|+++++ +
T Consensus 80 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gs-------------------d~~~~~t~a~~~--~ 138 (372)
T cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGS-------------------DLQGIRTTARKD--G 138 (372)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------chhhCeEEEEEe--C
Confidence 6666655666788899999999999999999999999999999998 888899999998 8
Q ss_pred CeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEE
Q psy9220 189 NSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFII 268 (464)
Q Consensus 189 ~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV 268 (464)
+||+|||+|.|||+++.||+++|.|+++++. +...++++|+|
T Consensus 139 ~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~--------------------------------------~~~~~~~~~lv 180 (372)
T cd01160 139 DHYVLNGSKTFITNGMLADVVIVVARTGGEA--------------------------------------RGAGGISLFLV 180 (372)
T ss_pred CEEEEeeEEEEecCCCccCEEEEEEEeCCCC--------------------------------------CCCCceEEEEE
Confidence 8999999999999999999999999986431 12246889999
Q ss_pred eCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9220 269 EKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYML 347 (464)
Q Consensus 269 ~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~ 347 (464)
|++.||+++.+.|+++|++++++++++|+||+||++++||.++ |+......+...|+.+++.++|+++++++.+++|++
T Consensus 181 ~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~ 260 (372)
T cd01160 181 ERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVK 260 (372)
T ss_pred eCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877 888888889999999999999999999999999999
Q ss_pred hhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCc
Q psy9220 348 DRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDE 427 (464)
Q Consensus 348 ~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~ 427 (464)
+|++||+|++++|.+|+++++|..++++++++++++++..+.+......++++|.++++.+.++++.+++++||.||+++
T Consensus 261 ~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~ 340 (372)
T cd01160 261 QRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMRE 340 (372)
T ss_pred hhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCC
Confidence 99999999999999999999999999999999999999888776556678999999999999999999999999999999
Q ss_pred ccHHHHHhhhccceeccChHHHHHHHHHHHhh
Q psy9220 428 YHVIRHMNNLEVVNTYEGTSDIHALILGRAIT 459 (464)
Q Consensus 428 ~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~ 459 (464)
++++|+|||+++..+++|++++++..|++.++
T Consensus 341 ~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~~ 372 (372)
T cd01160 341 YPIARAYRDARVQPIYGGTTEIMKELISRQMV 372 (372)
T ss_pred CHHHHHHHHhhcccccCCHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998763
No 15
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.4e-60 Score=492.47 Aligned_cols=369 Identities=20% Similarity=0.252 Sum_probs=329.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCchhh--hhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcC
Q psy9220 26 LLTQEEKLLRDSVKSFCDAVLHPKIVE--DFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVD 102 (464)
Q Consensus 26 ~l~~~~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~ 102 (464)
.++++++++++.+++|+++.+.+.... .+..+.+| +++|+++.+.||+++.+|+ |||.|+++.+...++|++++.+
T Consensus 3 ~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 3 DLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWS-KAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCC-HHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 578999999999999999998875443 45667899 9999999999999999998 9999999999999999999976
Q ss_pred CchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEE
Q psy9220 103 SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRA 182 (464)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A 182 (464)
.+.. +..+..++..++..+|+++||++|||++++|+.+.++++|||++|| |...+.|+|
T Consensus 82 ~~~~--~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gs-------------------d~~~~~t~a 140 (378)
T TIGR03203 82 VLEP--YLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRY-------------------DLGDVSTTA 140 (378)
T ss_pred cchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCC-------------------CcccceEEE
Confidence 5432 1122223445778899999999999999999999999999999998 888999999
Q ss_pred EEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 183 KYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 183 ~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
+++ +++|+|||+|.|||+++.||+++|+|+++++. ++.++
T Consensus 141 ~~~--g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~--------------------------------------~~~~g 180 (378)
T TIGR03203 141 KKT--GDGWVIDGEKFVVLNGETADTLIVTARTKGAR--------------------------------------RDRTG 180 (378)
T ss_pred EEc--CCEEEEEeEEEEecCCccCCEEEEEEecCCCC--------------------------------------CCCCc
Confidence 998 88999999999999999999999999985331 12246
Q ss_pred eEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy9220 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSM 341 (464)
Q Consensus 263 ~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 341 (464)
+++|+||.+.|||++.+.+.++|+ .+++++||||+||++++||..+ |++.....++..|+.+++.++|+++++++.
T Consensus 181 ~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 257 (378)
T TIGR03203 181 IGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKT 257 (378)
T ss_pred eEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999777666666 4689999999999999999877 899999999999999999999999999999
Q ss_pred HHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9220 342 ARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESN--LDTPEMISILKRNNCAKALDIARNARDML 419 (464)
Q Consensus 342 a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~--~~~~~~~~~aK~~~~~~a~~v~~~a~~~~ 419 (464)
+++|+++|+|||+||++||.+|++||+|.++++++|+++++++...+.+ .+....++++|.++++.+.++++.++|+|
T Consensus 258 a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~ 337 (378)
T TIGR03203 258 TVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSIQLH 337 (378)
T ss_pred HHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999887753 24456789999999999999999999999
Q ss_pred CcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 420 GGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 420 Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
||+||+++++++|+|||++...+++|++++++..+++. .|
T Consensus 338 Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~-~~ 377 (378)
T TIGR03203 338 GGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA-GG 377 (378)
T ss_pred cceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cC
Confidence 99999999999999999999999999999999999883 44
No 16
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-60 Score=495.38 Aligned_cols=371 Identities=26% Similarity=0.391 Sum_probs=343.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCC
Q psy9220 25 SLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDS 103 (464)
Q Consensus 25 ~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~ 103 (464)
+.++++++.+++.+++|+++.+.|...+.|+.+.+| .++|+.+++.||+++.+|+ |||.|+++.+...++|++++.|+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~-~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~ 113 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFN-RDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDP 113 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCC-HHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCc
Confidence 468999999999999999999999988888888899 9999999999999999998 99999999999999999999998
Q ss_pred chhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEE
Q psy9220 104 GYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAK 183 (464)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~ 183 (464)
++++.+..|.......+..+++++||++|++++++|+.++++++|||.+|| |+..+.|+|+
T Consensus 114 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gs-------------------d~~~~~t~a~ 174 (410)
T PTZ00461 114 GFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGT-------------------DVLGMRTTAK 174 (410)
T ss_pred hHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------ChHHCeEEEE
Confidence 876655556544555677899999999999999999999999999999998 8888999999
Q ss_pred EeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCe
Q psy9220 184 YDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQI 263 (464)
Q Consensus 184 ~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
++. +|+|+|||+|.|||++..||+++|.|+++ + ++
T Consensus 175 ~~~-~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~-~-------------------------------------------~~ 209 (410)
T PTZ00461 175 KDS-NGNYVLNGSKIWITNGTVADVFLIYAKVD-G-------------------------------------------KI 209 (410)
T ss_pred EcC-CCeEEEEeEEEeECCCccCCEEEEEEEeC-C-------------------------------------------ce
Confidence 873 45899999999999999999999999864 2 36
Q ss_pred EEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9220 264 RGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMA 342 (464)
Q Consensus 264 ~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a 342 (464)
++|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.++ |+......+...|+.+++.++|+++++++.+
T Consensus 210 ~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a 289 (410)
T PTZ00461 210 TAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELM 289 (410)
T ss_pred EEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999877 8888888899999999999999999999999
Q ss_pred HHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q psy9220 343 RSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGN 422 (464)
Q Consensus 343 ~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~ 422 (464)
++|+++|++||+||+++|.+|+++++|..+++++|++++++++.++.+......++++|.++++.+.++++.++|++||+
T Consensus 290 ~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~ 369 (410)
T PTZ00461 290 TSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVMGGM 369 (410)
T ss_pred HHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998877655556788999999999999999999999999
Q ss_pred cccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 423 GISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 423 g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
||..+++++|+|||++...+++|++++++..|++.+++
T Consensus 370 G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~ 407 (410)
T PTZ00461 370 GYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLK 407 (410)
T ss_pred ccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998754
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.4e-60 Score=494.30 Aligned_cols=392 Identities=27% Similarity=0.430 Sum_probs=351.5
Q ss_pred cccCcc--cCcccccccCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCC
Q psy9220 9 RSYSTK--FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAG 85 (464)
Q Consensus 9 ~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g 85 (464)
-..+++ |.++++ |+..++++++.+++.+++|+++.+.|. ..++.+.+| .++|+.+++.||+++.+|+ |||.|
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~-~~~~~~l~~~Gl~~l~vP~~~GG~g 83 (409)
T cd01161 9 GDIVTKQVFPYPSV--LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIP-RKTLTQLKELGLFGLQVPEEYGGLG 83 (409)
T ss_pred CCcchhhcCCCccc--cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCC-HHHHHHHHhCCCCCCCCChhhCCCC
Confidence 334444 345555 666789999999999999999999885 356667899 9999999999999999998 99999
Q ss_pred CCHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccC
Q psy9220 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFG 165 (464)
Q Consensus 86 ~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~ 165 (464)
+++.+...++|++++ |+++++.+.+|...+...+..+++++|+++|++++++|+.++++++|||++||
T Consensus 84 ~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs----------- 151 (409)
T cd01161 84 LNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGS----------- 151 (409)
T ss_pred CCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCC-----------
Confidence 999999999999999 99887777777655555677899999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhh
Q psy9220 166 LTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLC 245 (464)
Q Consensus 166 ~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|...+.|+|++++++++|+|||+|.|||++..||+++|.|++++...
T Consensus 152 --------~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~------------------------- 198 (409)
T cd01161 152 --------DAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDA------------------------- 198 (409)
T ss_pred --------ChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCC-------------------------
Confidence 88889999999754668999999999999999999999999863200
Q ss_pred hhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHH
Q psy9220 246 ILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSAR 324 (464)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r 324 (464)
.+...+++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||..+ |+......+..+|
T Consensus 199 ----------~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r 268 (409)
T cd01161 199 ----------TGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGR 268 (409)
T ss_pred ----------CCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHH
Confidence 01112467899999999999999999999999999999999999999999999877 8888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHH
Q psy9220 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL--DTPEMISILKR 402 (464)
Q Consensus 325 ~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~--~~~~~~~~aK~ 402 (464)
+.+++.++|+++++++.+++|+++|++||+||.++|.+|+++++|.++++++|++++++++.+|++. +....++++|.
T Consensus 269 ~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~ 348 (409)
T cd01161 269 FGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKV 348 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 34567899999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 403 NNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 403 ~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++.+|++.+++
T Consensus 349 ~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~ 406 (409)
T cd01161 349 FASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQ 406 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999865
No 18
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.1e-58 Score=476.15 Aligned_cols=370 Identities=33% Similarity=0.543 Sum_probs=346.3
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhH
Q psy9220 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSM 108 (464)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~ 108 (464)
++.++++.+++|+++.+.+...+.++.+.+| .++|+.|++.||+++.+|+ |||.|.++.+...+++++++.|+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~-~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~ 80 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFP-REVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVI 80 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCC-HHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHH
Confidence 5788999999999999988888888888899 9999999999999999998 9999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCC
Q psy9220 109 YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188 (464)
Q Consensus 109 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~ 188 (464)
+.+|...+...+..+++++|+++|++++.+|+.++++++|||.+|| |...+.++++++ +
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs-------------------~~~~~~~~a~~~--~ 139 (373)
T cd01158 81 VSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGS-------------------DAAALKTTAKKD--G 139 (373)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC-------------------CHHHCEeEEEEe--C
Confidence 8888766667888999999999999999999999999999999888 888889999998 8
Q ss_pred CeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEE
Q psy9220 189 NSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFII 268 (464)
Q Consensus 189 ~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV 268 (464)
+||+|||+|.|+|++..||+++|.++++++ ++..++++|+|
T Consensus 140 ~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~---------------------------------------~~~~~~~~~lv 180 (373)
T cd01158 140 DDYVLNGSKMWITNGGEADFYIVFAVTDPS---------------------------------------KGYRGITAFIV 180 (373)
T ss_pred CEEEEeeEEEEEcCCCcCCEEEEEEEcCCC---------------------------------------CCCCceEEEEE
Confidence 899999999999999999999999987533 12246789999
Q ss_pred eCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9220 269 EKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYML 347 (464)
Q Consensus 269 ~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~ 347 (464)
|.+.|||++.+.|+++|+++++++++.|+||+||++++|+.++ |+......+...|+.+++.++|+++++++.+++|++
T Consensus 181 p~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~ 260 (373)
T cd01158 181 ERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAK 260 (373)
T ss_pred cCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877 888888888899999999999999999999999999
Q ss_pred hhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCc
Q psy9220 348 DRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDE 427 (464)
Q Consensus 348 ~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~ 427 (464)
+|++||+++.++|.+|++++++.++++++++++++++..++.+.+....++++|.++++.+.++++.+++++||.||.++
T Consensus 261 ~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~ 340 (373)
T cd01158 261 ERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKD 340 (373)
T ss_pred hCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCC
Confidence 99999999999999999999999999999999999999998776666778999999999999999999999999999999
Q ss_pred ccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 428 YHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 428 ~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
++++|+|||++...+++|++++++..+++++++
T Consensus 341 ~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 341 YPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred ChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999875
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-58 Score=503.77 Aligned_cols=382 Identities=22% Similarity=0.290 Sum_probs=329.8
Q ss_pred cCcccccccCCC-CCHHHHHHHHH-HHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHH
Q psy9220 15 FNWEDALNISSL-LTQEEKLLRDS-VKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISG 91 (464)
Q Consensus 15 ~~~~~~~~~~~~-l~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~ 91 (464)
++|....+.+.. |++|++.+++. +++|++.. ......++.+.+| +++|+.+++.||+++.+|+ |||.|++..+.
T Consensus 66 ~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~--~~~~~~~~~~~~P-~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~ 142 (777)
T PRK09463 66 PDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMV--NDWQITHELADLP-PEVWQFIKEHGFFGMIIPKEYGGLEFSAYAH 142 (777)
T ss_pred CChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHhccccCCC-HHHHHHHHHCCCCcCCCchhhCCCCCCHHHH
Confidence 344444444433 89999999996 77777632 1112222346899 9999999999999999998 99999999999
Q ss_pred HHHHHHHHhcCCchhhHHHhhhhhH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCC
Q psy9220 92 GLVAREIERVDSGYRSMYSVQSSLV-MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPN 170 (464)
Q Consensus 92 ~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~ 170 (464)
+.++|++++.|++++..+.++.+++ ..++..+|+++||++|||++++|+.++|+++|||++||
T Consensus 143 a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGS---------------- 206 (777)
T PRK09463 143 SRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGS---------------- 206 (777)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCC----------------
Confidence 9999999999988876666776665 35788999999999999999999999999999999999
Q ss_pred CCCCCCCceeEE-----EEeCCCC---eEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCch
Q psy9220 171 AGSDVANMQTRA-----KYDPSSN---SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLA 242 (464)
Q Consensus 171 ~~~d~~~~~t~A-----~~~~~~~---g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (464)
|+..+.|++ +++ ++ ||+|||+|.|||+++.||+++|++++.++..
T Consensus 207 ---Daa~i~Tta~~~~a~~d--Gd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~---------------------- 259 (777)
T PRK09463 207 ---DAGSIPDTGVVCKGEWQ--GEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDG---------------------- 259 (777)
T ss_pred ---Ccccccccceeeeeeec--CCcccceEEEEEEEeeCCCCccCEEEEEEEecCccc----------------------
Confidence 877777544 333 44 6999999999999999999999998643310
Q ss_pred hhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccc---c-ChHHHHH
Q psy9220 243 DLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA---N-SYKAPFT 318 (464)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~---~-g~~~~~~ 318 (464)
........++++|+||.+.|||++.+.+.++|++ ..+++++|+||+||.+++||.. + |++.+..
T Consensus 260 -----------~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~ 327 (777)
T PRK09463 260 -----------LLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLME 327 (777)
T ss_pred -----------ccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHH
Confidence 0000123578999999999999999999999998 5789999999999999999974 4 9999999
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q psy9220 319 LLNSAR-YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMI 397 (464)
Q Consensus 319 ~l~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~ 397 (464)
.++.+| +.+++.++|++++|++.+.+|+++|+|||+||+++|.+|++||+|..++++++++.+.+++.+|.+......+
T Consensus 328 ~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~a 407 (777)
T PRK09463 328 CLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLS 407 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999888888876566789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCc--ccHHHHHhhhccceeccChHHHHHHHH
Q psy9220 398 SILKRNNCAKALDIARNARDMLGGNGISDE--YHVIRHMNNLEVVNTYEGTSDIHALIL 454 (464)
Q Consensus 398 ~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~--~~l~r~~rda~~~~~~~G~~~~~~~~i 454 (464)
+++|+++++.+.+++++++|+|||+||+++ ++++|+|||++...+++|++++++..|
T Consensus 408 A~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 408 AIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999999999999999999999987 899999999999999999999999865
No 20
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.5e-57 Score=472.16 Aligned_cols=372 Identities=22% Similarity=0.304 Sum_probs=326.0
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcC-------CCC---hHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q psy9220 31 EKLLRDSVKSFCDAVLHPKIVEDFRHE-------TSD---VRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIE 99 (464)
Q Consensus 31 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~---~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~ 99 (464)
.+.+++.+++|+++++.|...+.++.+ .+| .+++|+.+++.||+++.+|+ |||.|+++.+...++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 467999999999999998876666421 133 15888899999999999998 9999999999999999999
Q ss_pred hcCCc-hhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCC-CCCCcccccccccCCCCCCCCCCCCC
Q psy9220 100 RVDSG-YRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPN-AGSDVANMQTRCFGLTEPNAGSDVAN 177 (464)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~-~gs~~~~~~~~~~~~~~~~~~~d~~~ 177 (464)
+.+.. ..+....+...++..+..+++++|+++|++++++|+.++++++|||. .|| |...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gs-------------------d~~~ 143 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASS-------------------DATN 143 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCC-------------------chhh
Confidence 98633 22111222222345688899999999999999999999999999997 467 8888
Q ss_pred ceeEEEEeCCCCeEEEEeEEEeecCCCC--CCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCC
Q psy9220 178 MQTRAKYDPSSNSYIITGSKTWISSAPL--ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDAT 255 (464)
Q Consensus 178 ~~t~A~~~~~~~g~~lnG~K~~vs~~~~--Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
+.|+|+++ ++||+|||+|.|+|++.+ +|+++|+++++++.
T Consensus 144 ~~t~a~~~--~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~~~~------------------------------------ 185 (394)
T cd01155 144 IECSIERD--GDDYVINGRKWWSSGAGDPRCKIAIVMGRTDPDG------------------------------------ 185 (394)
T ss_pred CEEEEEEE--CCEEEEEEEEEEEcCCCCCCCCEEEEEEEeCCCc------------------------------------
Confidence 99999998 889999999999999954 88999999875330
Q ss_pred CCCCCCCeEEEEEeCCCCCeEEeccCCccCCcc--cCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHH
Q psy9220 256 HGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRA--SVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVL 332 (464)
Q Consensus 256 ~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~--~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~ 332 (464)
++...++++|+||++.||+++.+.|+++|+++ ++++++.|+||+||++++|+.++ |+......++..|+..++.++
T Consensus 186 -~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~l 264 (394)
T cd01155 186 -APRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLI 264 (394)
T ss_pred -CCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHH
Confidence 01224678999999999999999999999997 57899999999999999999877 888888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHHH
Q psy9220 333 GAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL--DTPEMISILKRNNCAKALD 410 (464)
Q Consensus 333 G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~--~~~~~~~~aK~~~~~~a~~ 410 (464)
|+++++++.+++|+++|++||+||+++|.+|+++++|.++++++|++++++++.++... .....++++|.++++.+.+
T Consensus 265 G~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~a~~ 344 (394)
T cd01155 265 GAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALK 344 (394)
T ss_pred HHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988743 2456789999999999999
Q ss_pred HHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 411 IARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 411 v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
+++.+++++||+||.++++++|+|||++...+++|++++++..|++.+++
T Consensus 345 ~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 345 IIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998753
No 21
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.9e-56 Score=464.29 Aligned_cols=372 Identities=20% Similarity=0.298 Sum_probs=323.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCchhhhh-hcCCCCh---HHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q psy9220 25 SLLTQEEKLLRDSVKSFCDAVLHPKIVEDF-RHETSDV---RAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIE 99 (464)
Q Consensus 25 ~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~---~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~ 99 (464)
+.+++++.++++.+++|+++.+.|...+.. ....+|. +++|+++.+.||+++.+|+ |||.|+++.+...++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988765432 2334551 2899999999999999998 9999999999999999999
Q ss_pred hcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCce
Q psy9220 100 RVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQ 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (464)
+.+.+..+.+.+ .+....+..+|+++||++|||++++|+.+.++++|||++|| |+..+.
T Consensus 82 ~~~~~~~~~~~~--~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gs-------------------d~~~~~ 140 (395)
T TIGR03204 82 SAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGS-------------------DLASLK 140 (395)
T ss_pred hcCCCccchhHh--HhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCC-------------------Chhhce
Confidence 998877643332 23344678889999999999999999999999999999999 888899
Q ss_pred eEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCC
Q psy9220 180 TRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259 (464)
Q Consensus 180 t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
|+|+++ +++|+|||+|.|||+++.||+++|+|+++++. ++
T Consensus 141 t~a~~~--g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~--------------------------------------~~ 180 (395)
T TIGR03204 141 TKAEKK--GDKWIINGQKTWTTLAQHADWIFCLCRTDPTA--------------------------------------KK 180 (395)
T ss_pred EEEEEc--CCEEEEeeEEEeecCCccCCeEEEEEEeCCCC--------------------------------------CC
Confidence 999988 78999999999999999999999999975320 12
Q ss_pred CCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy9220 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFC 338 (464)
Q Consensus 260 ~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~a 338 (464)
..++++|+||.+.||+++.+.....| ++++++++|+||+||++++||..+ |+......++..|+.+++ +|+++++
T Consensus 181 ~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~ 256 (395)
T TIGR03204 181 QMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKER 256 (395)
T ss_pred CCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 24679999999999999977655555 678999999999999999998866 888889999999999876 8999999
Q ss_pred HHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CchhHHHHHHHHHHHHHHHHHHHHH
Q psy9220 339 FSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKE-SNL-DTPEMISILKRNNCAKALDIARNAR 416 (464)
Q Consensus 339 l~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d-~~~-~~~~~~~~aK~~~~~~a~~v~~~a~ 416 (464)
++.+++|+++|++||+||+++|.+|++|++|.++++++|+++|+++.... .+. .....++++|.++++.+.++++.++
T Consensus 257 l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~a~ 336 (395)
T TIGR03204 257 IRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLM 336 (395)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975432 222 2345799999999999999999999
Q ss_pred HH----------hCcccccCc----ccHHHHHhhhccceeccChHHHHHHHHHHHhhCC
Q psy9220 417 DM----------LGGNGISDE----YHVIRHMNNLEVVNTYEGTSDIHALILGRAITGI 461 (464)
Q Consensus 417 ~~----------~Gg~g~~~~----~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~ 461 (464)
|+ |||+||.++ ++++|+|||++...+++|++++++..|+|.++++
T Consensus 337 q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~~ 395 (395)
T TIGR03204 337 EVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLGL 395 (395)
T ss_pred HhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcCC
Confidence 85 889999865 4699999999999999999999999999999874
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=9.1e-57 Score=491.76 Aligned_cols=378 Identities=21% Similarity=0.248 Sum_probs=320.0
Q ss_pred CcccccccCC-CCCHHHHHHHH-HHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHH
Q psy9220 16 NWEDALNISS-LLTQEEKLLRD-SVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGG 92 (464)
Q Consensus 16 ~~~~~~~~~~-~l~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~ 92 (464)
+|....+.+. .|++|++.+.+ .++++++. +.. ....++.+.+| +++|+.+++.||+++.+|+ |||.|++..+..
T Consensus 66 ~~~~l~~~p~~~l~~eeq~fl~~~v~~l~~~-~~e-~~~~~~~~~~P-~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a 142 (774)
T PRK13026 66 DWQKLHSYPKPTLTAEEQAFIDNEVETLLTM-LDD-WDIVQNRKDLP-PEVWDYLKKEGFFALIIPKEYGGKGFSAYANS 142 (774)
T ss_pred ChhhcCCCCccccCHHHHHHHHHHHHHHHhh-hhh-hhhhhhhcCCC-HHHHHHHHHCCCCcCCCChhhCCCCCCHHHHH
Confidence 3443333433 36777776666 67777652 222 23335567899 9999999999999999998 999999999999
Q ss_pred HHHHHHHhcCCchhhHHHhhhhhH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCC
Q psy9220 93 LVAREIERVDSGYRSMYSVQSSLV-MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNA 171 (464)
Q Consensus 93 ~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~ 171 (464)
.++|++++.+.+++..+.++++++ ..++..+|+++||++|||++++|+.++|+++|||++||
T Consensus 143 ~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGS----------------- 205 (774)
T PRK13026 143 TIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGS----------------- 205 (774)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCC-----------------
Confidence 999999998888776666666554 45788999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEE---eCCCC---eEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhh
Q psy9220 172 GSDVANMQTRAKY---DPSSN---SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLC 245 (464)
Q Consensus 172 ~~d~~~~~t~A~~---~~~~~---g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|+..+.|+++. ..+++ ||+|||+|.|||+++.||+++|++++.++..
T Consensus 206 --Daasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~------------------------- 258 (774)
T PRK13026 206 --DAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDG------------------------- 258 (774)
T ss_pred --chhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccc-------------------------
Confidence 88888866542 11154 6999999999999999999988887543310
Q ss_pred hhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccc---c-ChHHHHHhhh
Q psy9220 246 ILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA---N-SYKAPFTLLN 321 (464)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~---~-g~~~~~~~l~ 321 (464)
...+++..++++|+||.+.|||++.+.++++|++.. +++++||||+||.+++||.+ + |+..+...++
T Consensus 259 --------~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~ 329 (774)
T PRK13026 259 --------LLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLS 329 (774)
T ss_pred --------cccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHH
Confidence 000022457899999999999999999999999874 68999999999999999975 5 8999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCchhHH
Q psy9220 322 SAR-YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT---DISLALVSCCQVGRLKESNLDTPEMI 397 (464)
Q Consensus 322 ~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~---~l~~~r~~~~~~~~~~d~~~~~~~~~ 397 (464)
.+| +.+++.++|++++|++.+.+|+++|+|||+||+++|.||++||+|.. .++++|.++++++ |.+......+
T Consensus 330 ~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~a 406 (774)
T PRK13026 330 AGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVT 406 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHH
Confidence 999 89999999999999999999999999999999999999999999999 7899999988765 4454455788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCc--ccHHHHHhhhccceeccChHHHHHH
Q psy9220 398 SILKRNNCAKALDIARNARDMLGGNGISDE--YHVIRHMNNLEVVNTYEGTSDIHAL 452 (464)
Q Consensus 398 ~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~--~~l~r~~rda~~~~~~~G~~~~~~~ 452 (464)
+++|+++++.+.+++++++|+|||.||+++ ++++|+|||++...+++|++++++.
T Consensus 407 A~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~ 463 (774)
T PRK13026 407 AIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRN 463 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999999986
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.3e-56 Score=464.57 Aligned_cols=378 Identities=35% Similarity=0.563 Sum_probs=344.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCchhhhhh---cCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhc
Q psy9220 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFR---HETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERV 101 (464)
Q Consensus 26 ~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~ 101 (464)
.+++++..+++.+++|+++.+.|.....+. .+.+| +++++.+.+.|++++.+|+ |||.|.+..+...+.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~ 82 (393)
T COG1960 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFP-RELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARA 82 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCH-HHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhh
Confidence 345888999999999999999887777775 67888 9999999999999999998 999999999999999999999
Q ss_pred CCchhhHHHhhhh---hHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCc
Q psy9220 102 DSGYRSMYSVQSS---LVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANM 178 (464)
Q Consensus 102 ~~~~~~~~~~~~~---~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~ 178 (464)
+++.+..+.++.. .....+..+|+++|+++|+|++++|+.++|+++|||.+|| |+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gs-------------------d~~~~ 143 (393)
T COG1960 83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGS-------------------DLASL 143 (393)
T ss_pred CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCc-------------------chhcC
Confidence 9987755554432 2333566799999999999999999999999999999999 88888
Q ss_pred e-eEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCC
Q psy9220 179 Q-TRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHG 257 (464)
Q Consensus 179 ~-t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
. |++++. +|+|+|||+|+|||+++.||+++|+|++++..
T Consensus 144 ~~t~a~~~--~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~~-------------------------------------- 183 (393)
T COG1960 144 RTTAAVRD--DGDYVLNGQKIWISNAPVADWLLVLARTDPAP-------------------------------------- 183 (393)
T ss_pred ceeEEEec--CCCEEEEeEEEEEcCCCCCCEEEEEEEcCCcc--------------------------------------
Confidence 7 777776 55699999999999999999999999997551
Q ss_pred CCCCCeEEEEEeCC-CCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHH
Q psy9220 258 PQNPQIRGFIIEKD-TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAA 335 (464)
Q Consensus 258 ~~~~~~~~flV~~~-~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a 335 (464)
++.+++++|+||.+ .||+++.+.|++.|+++++++++.|+||+||.+++||..+ |+......++.+|+.+++.++|.+
T Consensus 184 ~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a 263 (393)
T COG1960 184 GKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIA 263 (393)
T ss_pred cccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHH
Confidence 23457999999999 5999999997655999999999999999999999999776 999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy9220 336 EFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNA 415 (464)
Q Consensus 336 ~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a 415 (464)
+++++.+.+|+++|++||++++++|.+|+++++|.++++++|+++++++...+...+....++++|.++++.+.++++.+
T Consensus 264 ~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~~~~~~a 343 (393)
T COG1960 264 EAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVADEA 343 (393)
T ss_pred HHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988876445789999999999999999999
Q ss_pred HHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCCCC
Q psy9220 416 RDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQA 463 (464)
Q Consensus 416 ~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~~~ 463 (464)
+|++||.||..+++++|+|||++...+++|++++++..+++.+++.++
T Consensus 344 ~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~ 391 (393)
T COG1960 344 VQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPA 391 (393)
T ss_pred HHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999998865
No 24
>KOG0137|consensus
Probab=100.00 E-value=4.6e-57 Score=463.62 Aligned_cols=383 Identities=25% Similarity=0.408 Sum_probs=350.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcCC--chhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHH
Q psy9220 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHP--KIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVA 95 (464)
Q Consensus 19 ~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~ 95 (464)
+..+....++.|+.++.+++-..+++.+.. .....|..+..+ .+.++.|+++|+|++.+|+ |||.|+.+.+++.+.
T Consensus 68 ~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~-~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~ 146 (634)
T KOG0137|consen 68 DVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIE-ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLF 146 (634)
T ss_pred hhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccc-hhHHHHHHHhCceeeccCcccCccccchHHHHHHh
Confidence 455566667888888776665555555432 235567777888 8999999999999999997 999999999999999
Q ss_pred HHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCC
Q psy9220 96 REIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDV 175 (464)
Q Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~ 175 (464)
|.++.+|.++.+.+..|.+.+.-.|..+|+++||++|||++++|+++++|++|||..|| |.
T Consensus 147 e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gs-------------------da 207 (634)
T KOG0137|consen 147 EIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGS-------------------DA 207 (634)
T ss_pred hccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCc-------------------cc
Confidence 99999999988777777667777899999999999999999999999999999999999 99
Q ss_pred CCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCC
Q psy9220 176 ANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDAT 255 (464)
Q Consensus 176 ~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
..+.|+|+..++++.|+|||.|.||+++..||+++|+|+++.++.
T Consensus 208 as~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~----------------------------------- 252 (634)
T KOG0137|consen 208 ASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPA----------------------------------- 252 (634)
T ss_pred ccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCC-----------------------------------
Confidence 999999999998899999999999999999999999999974411
Q ss_pred CCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHH
Q psy9220 256 HGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGA 334 (464)
Q Consensus 256 ~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~ 334 (464)
+|...+.+++|||+++..|++-.++..++|.+++.+.+++|+||.||.+++||.++ |++++..+++.+|+..++..+|.
T Consensus 253 ~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~ 332 (634)
T KOG0137|consen 253 DGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGL 332 (634)
T ss_pred CccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHH
Confidence 23556789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHHHH
Q psy9220 335 AEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESN--LDTPEMISILKRNNCAKALDIA 412 (464)
Q Consensus 335 a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~--~~~~~~~~~aK~~~~~~a~~v~ 412 (464)
|+++++++..|+..|+|||++|.++..+|+++++|...++++++++|..+..+|+. .+...++++.|+++++.++.++
T Consensus 333 mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~ 412 (634)
T KOG0137|consen 333 MKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVV 412 (634)
T ss_pred HHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999983 5677899999999999999999
Q ss_pred HHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHH
Q psy9220 413 RNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGR 456 (464)
Q Consensus 413 ~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r 456 (464)
++++|++||+||..+.++||.+||++.+.+++|++++++..|+.
T Consensus 413 se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAl 456 (634)
T KOG0137|consen 413 SEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIAL 456 (634)
T ss_pred HhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999998854
No 25
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.9e-55 Score=453.04 Aligned_cols=361 Identities=24% Similarity=0.337 Sum_probs=320.2
Q ss_pred HHHHHHHHHhhcCCchhhhhhcCC--------CCh--HHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCC
Q psy9220 35 RDSVKSFCDAVLHPKIVEDFRHET--------SDV--RAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDS 103 (464)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~~~~--------~~~--~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~ 103 (464)
++.+++|+++.+.|...+.|+... +|. .++|++|++.||+++.+|+ |||.|.++.+...++|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999999998877776653 772 4679999999999999998 99999999999999999999999
Q ss_pred chhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEE
Q psy9220 104 GYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAK 183 (464)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~ 183 (464)
++++.+.++. ....+..+++++||++|++++++|+.++++++|||++|| |+..+.|+++
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gs-------------------d~~~~~t~a~ 140 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGS-------------------DLGALRTKAV 140 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCC-------------------CcccceEEEE
Confidence 8876655543 345678889999999999999999999999999999998 8888999999
Q ss_pred EeCCCCeEEEEeEEEeecCCCCC----CEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCC
Q psy9220 184 YDPSSNSYIITGSKTWISSAPLA----DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259 (464)
Q Consensus 184 ~~~~~~g~~lnG~K~~vs~~~~A----d~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
+++ +|+|+|||+|.|+|++.+| ++++|+++++++. ++
T Consensus 141 ~~~-~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~~~~--------------------------------------~~ 181 (407)
T cd01153 141 YQA-DGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAP--------------------------------------PG 181 (407)
T ss_pred ECC-CCcEEEeeEEEEEeCCCcccccccEEEEEEeCCCCC--------------------------------------CC
Confidence 874 4689999999999999886 5788999875331 12
Q ss_pred CCCeEEEEEeCCC-----CCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHH
Q psy9220 260 NPQIRGFIIEKDT-----PGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLG 333 (464)
Q Consensus 260 ~~~~~~flV~~~~-----~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G 333 (464)
.+++++|+||++. |||++.+.|+++|+++++++++.|+||+|| +|+.++ |+......+...|+.+++.++|
T Consensus 182 ~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~lG 258 (407)
T cd01153 182 VKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTG 258 (407)
T ss_pred CCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2367899999987 899999999999999999999999999999 788777 8888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcc--------cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------------
Q psy9220 334 AAEFCFSMARSYMLDRVQFNKP--------LAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDT------------ 393 (464)
Q Consensus 334 ~a~~al~~a~~~~~~R~~~g~~--------l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~------------ 393 (464)
+++++++.+++|+++|++||+| +.++|.+|++|++|.+++++++++++++++.+|.....
T Consensus 259 ~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~ 338 (407)
T cd01153 259 LAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSA 338 (407)
T ss_pred HHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHH
Confidence 9999999999999999999999 78888999999999999999999999999988765311
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHH-HHHHHh
Q psy9220 394 --PEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHAL-ILGRAI 458 (464)
Q Consensus 394 --~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~-~i~r~l 458 (464)
...++++|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++. .++|.+
T Consensus 339 ~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~~ 406 (407)
T cd01153 339 LADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKI 406 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhccc
Confidence 23467899999999999999999999999999999999999999999999999998886 666654
No 26
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.5e-55 Score=453.40 Aligned_cols=363 Identities=24% Similarity=0.352 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhh-----hhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCC
Q psy9220 30 EEKLLRDSVKSFCDAVLHPKIVED-----FRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDS 103 (464)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~ 103 (464)
+++++++.+++|+++++.|..... +..+.+| .++++.|++.||+++.+|+ |||.|.++.+...++|++++.|.
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDR-RRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHH-HHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 577899999999999998876433 2345577 8999999999999999998 99999999999999999999999
Q ss_pred chhhH-HHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEE
Q psy9220 104 GYRSM-YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRA 182 (464)
Q Consensus 104 ~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A 182 (464)
++++. +.+ ..+...+..+|+++|+++||+++++|+.+.++++|||.+|| |...+.+++
T Consensus 81 ~~~~~~~~~--~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gs-------------------d~~~~~t~a 139 (380)
T cd01152 81 PVPFNQIGI--DLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGS-------------------DLAGLRTRA 139 (380)
T ss_pred CcccchhhH--HHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCc-------------------chhhCeeeE
Confidence 88754 332 23445688899999999999999999999999999999888 888899999
Q ss_pred EEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 183 KYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 183 ~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
+++ ++||+|||+|.|||+++.||+++|+|+++++. ++..+
T Consensus 140 ~~~--~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~--------------------------------------~~~~~ 179 (380)
T cd01152 140 VRD--GDDWVVNGQKIWTSGAHYADWAWLLVRTDPEA--------------------------------------PKHRG 179 (380)
T ss_pred EEc--CCeEEEecEEEEEcCccccCEEEEEEEeCCCc--------------------------------------cCcCC
Confidence 997 88999999999999999999999999975321 11236
Q ss_pred eEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy9220 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSM 341 (464)
Q Consensus 263 ~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 341 (464)
+++|+||++.||+++.+.|+++| ++++++++|+||+||.+++||.++ |+......+...|+.+++. +..+++.
T Consensus 180 ~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~----~~~~~~~ 253 (380)
T cd01152 180 ISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGS----AATFFEL 253 (380)
T ss_pred eEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchh----hhHHHHH
Confidence 78999999999999999998888 567899999999999999999877 8888888888888877644 4555556
Q ss_pred HHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy9220 342 ARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGG 421 (464)
Q Consensus 342 a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 421 (464)
+++|+++|.+||+||+++|.+|+++++|.+++++++++++++++.++.+......++++|.++++.+.++++.+++++||
T Consensus 254 a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg 333 (380)
T cd01152 254 LLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELALELLGT 333 (380)
T ss_pred HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 67788888999999999999999999999999999999999999998765555678999999999999999999999999
Q ss_pred ccccCc--------ccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 422 NGISDE--------YHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 422 ~g~~~~--------~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
.||.++ ++++|+|||++...+++|++++++..|++.++|
T Consensus 334 ~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 334 AALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred cccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 999988 799999999999999999999999999999886
No 27
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.2e-54 Score=471.56 Aligned_cols=381 Identities=23% Similarity=0.342 Sum_probs=334.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhc---CCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9220 23 ISSLLTQEEKLLRDSVKSFCDAVL---HPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIE 99 (464)
Q Consensus 23 ~~~~l~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~~v~e~l~ 99 (464)
|...++++..++++.+++|+++.. .|.....++.+.++.+++++.+++.|++++.+|+- ++.+...+.|+++
T Consensus 57 l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~-----~~~~~~~~~e~l~ 131 (686)
T PLN02636 57 LSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE-----DPAKYFAITEAVG 131 (686)
T ss_pred HHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC-----CHHHHHHHHHHHH
Confidence 344467778889999999998773 56555666666777678889999999999998753 6788899999999
Q ss_pred hcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCce
Q psy9220 100 RVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQ 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (464)
+.+.+++..+.+|..++...|..+|+++||++|||++.+|++++||++|||++|| |+..++
T Consensus 132 ~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGS-------------------dv~~le 192 (686)
T PLN02636 132 SVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGS-------------------NVQGLQ 192 (686)
T ss_pred hhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCccc-------------------CcccCe
Confidence 9998887677888878888899999999999999999999999999999999999 999999
Q ss_pred eEEEEeCCCCeEEEE-----eEEEeecCCCC-CCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhccc
Q psy9220 180 TRAKYDPSSNSYIIT-----GSKTWISSAPL-ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253 (464)
Q Consensus 180 t~A~~~~~~~g~~ln-----G~K~~vs~~~~-Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (464)
|+|++++++++|+|| |.|+||+|++. ||+++|+|++..+.++
T Consensus 193 TtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~-------------------------------- 240 (686)
T PLN02636 193 TTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHD-------------------------------- 240 (686)
T ss_pred eEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCC--------------------------------
Confidence 999998767899999 99999999976 9999999998632100
Q ss_pred CCCCCCCCCeEEEEEeCC-------CCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccc----------------
Q psy9220 254 ATHGPQNPQIRGFIIEKD-------TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA---------------- 310 (464)
Q Consensus 254 ~~~~~~~~~~~~flV~~~-------~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~---------------- 310 (464)
..++.+.++++||||.+ .|||++.++..++|+++.+++.+.||||+||.+++||..
T Consensus 241 -~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~ 319 (686)
T PLN02636 241 -SKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTI 319 (686)
T ss_pred -ccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCc
Confidence 00123568999999987 599999999999999999999999999999999999521
Q ss_pred c-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc------cccCccHHHHHHHHHHHHHHH----HHH
Q psy9220 311 N-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKP------LAANQIPQLKLANMLTDISLA----LVS 379 (464)
Q Consensus 311 ~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~------l~~~~~i~~~la~~~~~l~~~----r~~ 379 (464)
+ |+......+..+|+.+++.++|++++|++.|++|+.+|+|||+| |.++|.+|++|++|.++++++ +.+
T Consensus 320 ~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l 399 (686)
T PLN02636 320 NKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYL 399 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 77888999999999999999999999999999999999999999 999999999999999999995 467
Q ss_pred HHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHH
Q psy9220 380 CCQVGRLKESNL-----DTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALIL 454 (464)
Q Consensus 380 ~~~~~~~~d~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i 454 (464)
++.+++..+++. +....++++|.++++.+.+++++|+|+|||+||..+++++++|||++...+++|++++++.++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~i 479 (686)
T PLN02636 400 VERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQV 479 (686)
T ss_pred HHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHH
Confidence 777776665443 356679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q psy9220 455 GRAITG 460 (464)
Q Consensus 455 ~r~l~~ 460 (464)
+|.+++
T Consensus 480 Ar~ll~ 485 (686)
T PLN02636 480 AADLLK 485 (686)
T ss_pred HHHHHH
Confidence 998864
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=5e-54 Score=482.67 Aligned_cols=377 Identities=20% Similarity=0.271 Sum_probs=330.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcC-------CCChHHHHHHHH-HcCCCCCCCCC----------------
Q psy9220 25 SLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHE-------TSDVRAIYAEFG-RLGILGCTLRG---------------- 80 (464)
Q Consensus 25 ~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~e~~~~l~-~~Gl~~l~vP~---------------- 80 (464)
+.+++++.++++.+++|+++++.|...+.++.. .+|..+.|+++. ++||+++.+|+
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 447899999999999999999887765554321 245236777775 99999999997
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHhcCCchhhH-HHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCC
Q psy9220 81 ---------YGCAGASHISGGLVAREIERVDSGYRSM-YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEP 150 (464)
Q Consensus 81 ---------~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp 150 (464)
|||.|+++.+...++|++++.+.+.... +..+...++..+..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 8999999999999999999986542211 112222344578889999999999999999999999999999
Q ss_pred C-CCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCC--CCCCEEEEEEEecCCCCCCCCCCc
Q psy9220 151 N-AGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA--PLADLCILWAKCEDPTHGPQNPQI 227 (464)
Q Consensus 151 ~-~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~--~~Ad~~~v~A~~~~~~~~~~~~~~ 227 (464)
+ +|| |+.++.|+|+++ ++||+|||+|+|||++ +.||+++|+|+++++.
T Consensus 560 ~~~gs-------------------d~~~~~t~a~~~--g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~-------- 610 (822)
T PLN02876 560 QVASS-------------------DATNIECSIRRQ--GDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNA-------- 610 (822)
T ss_pred CccCc-------------------ccccceEEEEEc--CCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCC--------
Confidence 7 567 888999999998 8899999999999999 5799999999975331
Q ss_pred cccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCccc--CeeEEEEceeEeCccC
Q psy9220 228 RGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRAS--VTGSISLDNVRVSQDQ 305 (464)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~--~~~~v~f~nv~Vp~~~ 305 (464)
+..+++++|+||.+.|||++.+.|.++|++++ ++++++|+||+||+++
T Consensus 611 ------------------------------~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~ 660 (822)
T PLN02876 611 ------------------------------PKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKN 660 (822)
T ss_pred ------------------------------CCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhh
Confidence 12235789999999999999999999999984 5889999999999999
Q ss_pred cccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 306 MLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384 (464)
Q Consensus 306 llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~ 384 (464)
+||..+ |+......++.+|+.+++.++|++++|++.+++|+++|++||+||+++|.+|+++++|.++++++|+++++++
T Consensus 661 ~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa 740 (822)
T PLN02876 661 ILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAA 740 (822)
T ss_pred eecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776 8888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 385 RLKESNL--DTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 385 ~~~d~~~--~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
..+++.. .....++++|.++++.+.+++++++|++||+||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 741 ~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~ 818 (822)
T PLN02876 741 DQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQ 818 (822)
T ss_pred HHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHH
Confidence 9998732 345679999999999999999999999999999999999999999999999999999999999999875
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-53 Score=462.36 Aligned_cols=391 Identities=21% Similarity=0.297 Sum_probs=329.6
Q ss_pred ccCcccCcccccccCC--------CC-CHHHHHHHHHHHHHHHhhcCCchhhhhhcCCC---------C--hHHHHHHHH
Q psy9220 10 SYSTKFNWEDALNISS--------LL-TQEEKLLRDSVKSFCDAVLHPKIVEDFRHETS---------D--VRAIYAEFG 69 (464)
Q Consensus 10 ~~~~~~~~~~~~~~~~--------~l-~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---------~--~~e~~~~l~ 69 (464)
..|++|...++.+++. .+ .+..+.+++.+++|+++++.|...+.|+++.. | +.++|+.+.
T Consensus 30 ~~d~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~ 109 (622)
T PTZ00456 30 IRDVQFLVEEVFNMYDHYEKLGKTDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALK 109 (622)
T ss_pred HHHHHHHHHHHHCcHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHH
Confidence 4566777777666543 12 35566889999999999999988777766532 3 258999999
Q ss_pred HcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeec
Q psy9220 70 RLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLT 148 (464)
Q Consensus 70 ~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t 148 (464)
+.||+++.+|+ |||.|++......+.|.+.+.+.+++. +.......+..|..+|+++||++|||++++|++++++++|
T Consensus 110 e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~-~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alT 188 (622)
T PTZ00456 110 AGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSM-YPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLT 188 (622)
T ss_pred HcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhcc
Confidence 99999999998 999999987444444546667766542 2222223446788999999999999999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCC----CEEEEEEEecCCCCCCCC
Q psy9220 149 EPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA----DLCILWAKCEDPTHGPQN 224 (464)
Q Consensus 149 Ep~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~A----d~~~v~A~~~~~~~~~~~ 224 (464)
||++|| |+..+.|+|++++ +|+|+|||+|.|||++.++ ++++|+||+++..
T Consensus 189 Ep~aGS-------------------D~~~l~T~A~~~g-dG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~----- 243 (622)
T PTZ00456 189 EPQCGT-------------------DLGQVKTKAEPSA-DGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSL----- 243 (622)
T ss_pred CCccCC-------------------CcccCeeEEEECC-CCcEEEeeEEEEecCCchhhccCcEEEEEEEecCCC-----
Confidence 999999 9999999999983 3469999999999999873 6889999986431
Q ss_pred CCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCC----------CCeEEeccCCccCCcccCeeEE
Q psy9220 225 PQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDT----------PGYETSVIKGKFGLRASVTGSI 294 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~----------~Gv~i~~~~~~~G~~~~~~~~v 294 (464)
++.+++++|+||++. +|+++....+++|+++++++++
T Consensus 244 ---------------------------------~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l 290 (622)
T PTZ00456 244 ---------------------------------PTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQL 290 (622)
T ss_pred ---------------------------------CCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEE
Confidence 223468889998764 4788888889999999999999
Q ss_pred EEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------------CcccccCcc
Q psy9220 295 SLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQF------------NKPLAANQI 361 (464)
Q Consensus 295 ~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~------------g~~l~~~~~ 361 (464)
.|+|+ .+++||.++ |+...+..++.+|+.+++.++|+++++++.+++|+++|+|| ++||+++|.
T Consensus 291 ~fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~ 367 (622)
T PTZ00456 291 SFENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHAN 367 (622)
T ss_pred EeeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHH
Confidence 99994 689999988 99999999999999999999999999999999999999984 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C----------chhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcc
Q psy9220 362 PQLKLANMLTDISLALVSCCQVGRLKESNL---D----------TPEMISILKRNNCAKALDIARNARDMLGGNGISDEY 428 (464)
Q Consensus 362 i~~~la~~~~~l~~~r~~~~~~~~~~d~~~---~----------~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~ 428 (464)
+|++|++|.+.++++|+++++++..+|... + ....++++|.++++.+.++++.++|+|||+||++++
T Consensus 368 Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~ 447 (622)
T PTZ00456 368 VRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGN 447 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCc
Confidence 999999999999999999999999988642 1 123578999999999999999999999999999999
Q ss_pred cHHHHHhhhccceeccChHHHHH-HHHHHHhhCCC
Q psy9220 429 HVIRHMNNLEVVNTYEGTSDIHA-LILGRAITGIQ 462 (464)
Q Consensus 429 ~l~r~~rda~~~~~~~G~~~~~~-~~i~r~l~~~~ 462 (464)
+++|+|||++...+++|++++++ ..|+|.++|.+
T Consensus 448 ~ler~~RDari~~i~eGt~~iq~~dli~rkllg~~ 482 (622)
T PTZ00456 448 GMEQILRDARIGTLYEGTTGIQALDFIGRKVLSLK 482 (622)
T ss_pred hHHHHHHHhhcccccCChHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999997 59999988543
No 30
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.5e-52 Score=430.29 Aligned_cols=352 Identities=18% Similarity=0.195 Sum_probs=305.3
Q ss_pred HHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhH
Q psy9220 38 VKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLV 116 (464)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~ 116 (464)
++++.+ .+.+...+.|+.+.+| .+.|+.+++.||+++.+|+ |||.|+++.+...++|++++.|+++++++.+|...
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p-~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~- 79 (377)
T cd01163 3 ARPLAA-RIAEGAAERDRQRGLP-YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGF- 79 (377)
T ss_pred HHHHHH-HHhhhhhhhhhcCCCC-HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 455554 4677788889999999 9999999999999999998 99999999999999999999999998777776543
Q ss_pred HHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeE
Q psy9220 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196 (464)
Q Consensus 117 ~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~ 196 (464)
...+..+|+++||++|++++.+|++++ .++|||++|+ .....++++++ ++||+|||+
T Consensus 80 ~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~--------------------~~~~~~~~~~~--~~g~~lnG~ 136 (377)
T cd01163 80 VEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR--------------------PGTFLTATVRD--GGGYVLNGK 136 (377)
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC--------------------CCCceEEEEec--CCEEEEece
Confidence 467888999999999999999999765 5899998653 33456667776 789999999
Q ss_pred EEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeE
Q psy9220 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYE 276 (464)
Q Consensus 197 K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~ 276 (464)
|.|||++..||+++|.++++++ ++++|+||.+.|||+
T Consensus 137 K~~is~a~~Ad~~~v~a~~~~~-------------------------------------------~~~~~lV~~~~~Gv~ 173 (377)
T cd01163 137 KFYSTGALFSDWVTVSALDEEG-------------------------------------------KLVFAAVPTDRPGIT 173 (377)
T ss_pred EEeecCCccceEEEEEEEcCCC-------------------------------------------cEEEEEEeCCCCcee
Confidence 9999999999999999986432 467899999999999
Q ss_pred EeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCc
Q psy9220 277 TSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRV-QFNK 354 (464)
Q Consensus 277 i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~-~~g~ 354 (464)
+.+.|+++|++++++++++|+||+||+++++|..+ ++. ....+...|+.+++.++|+++++++.+++|+++|+ +||+
T Consensus 174 i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~ 252 (377)
T cd01163 174 VVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIH 252 (377)
T ss_pred ecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999877 543 23345678899999999999999999999999995 7876
Q ss_pred ----ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 355 ----PLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL------------DTPEMISILKRNNCAKALDIARNARDM 418 (464)
Q Consensus 355 ----~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~------------~~~~~~~~aK~~~~~~a~~v~~~a~~~ 418 (464)
++.++|.+|+++++|.++++++|+++++++..+|++. +....++++|.++++.+.++++.++|+
T Consensus 253 ~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~ 332 (377)
T cd01163 253 SGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEV 332 (377)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999887641 123467899999999999999999999
Q ss_pred hCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 419 LGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 419 ~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
+||+||.++++++|+|||++...+|...+ ....+++.++++
T Consensus 333 ~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~ 373 (377)
T cd01163 333 GGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALN 373 (377)
T ss_pred hCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcC
Confidence 99999999999999999999999887764 455677776654
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=8.3e-52 Score=451.74 Aligned_cols=370 Identities=21% Similarity=0.275 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHhhcC-------------Cc-hhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHH
Q psy9220 30 EEKLLRDSVKSFCDAVLH-------------PK-IVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVA 95 (464)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~-------------~~-~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~~v~ 95 (464)
+..+.++.+++++++... |. ....++....+ .+.++++.+.|+++..+|+-| .+ ++.....++
T Consensus 63 ~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~l~~~g~~~~~~pe~g-~~-~~~~~~~~~ 139 (680)
T PLN02312 63 HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREIT-MKRILYLLERGVFRGWLTETG-PE-AELRKLALL 139 (680)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhH-HHHHHHHHHhhhcCCCCCCCC-Cc-cHHHHHHHH
Confidence 445667777777664311 11 11233445667 788999999999999999832 33 577888999
Q ss_pred HHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCC
Q psy9220 96 REIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDV 175 (464)
Q Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~ 175 (464)
|++++.+.+++..+.+|..++...|..+|+++||++|||++.+|++++||++|||++|| |+
T Consensus 140 Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGS-------------------dv 200 (680)
T PLN02312 140 EVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGS-------------------NV 200 (680)
T ss_pred HHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCc-------------------ch
Confidence 99999988887667888777778899999999999999999999999999999999999 99
Q ss_pred CCceeEEEEeCCCCeEEEE-----eEEEeecCC-CCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhh
Q psy9220 176 ANMQTRAKYDPSSNSYIIT-----GSKTWISSA-PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWA 249 (464)
Q Consensus 176 ~~~~t~A~~~~~~~g~~ln-----G~K~~vs~~-~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (464)
..++|+|++++++++|+|| |.|+|++++ ..||+++|+|++..+
T Consensus 201 ~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~------------------------------- 249 (680)
T PLN02312 201 RGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHIN------------------------------- 249 (680)
T ss_pred hcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCC-------------------------------
Confidence 9999999998666899999 799999998 799999999998633
Q ss_pred hcccCCCCCCCCCeEEEEEe---CC---CCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccc--------------
Q psy9220 250 KCEDATHGPQNPQIRGFIIE---KD---TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLL-------------- 309 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~~flV~---~~---~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~-------------- 309 (464)
.++.+++.|+|| .+ .|||++.++..++|+++.+++.+.||||+||.+++||.
T Consensus 250 --------~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~ 321 (680)
T PLN02312 250 --------GKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAI 321 (680)
T ss_pred --------CCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCC
Confidence 123578999998 33 89999999999999999999999999999999999984
Q ss_pred --cc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc----c---cccCccHHHHHHHHHHHHHHHHHH
Q psy9220 310 --AN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK----P---LAANQIPQLKLANMLTDISLALVS 379 (464)
Q Consensus 310 --~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~----~---l~~~~~i~~~la~~~~~l~~~r~~ 379 (464)
++ |+......+..+|+.+++.++|++++|++.+++|+++|+|||+ | |++||.+|++|++|.+++++++..
T Consensus 322 ~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~ 401 (680)
T PLN02312 322 KDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFA 401 (680)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34 7888888999999999999999999999999999999999995 4 999999999999999999998888
Q ss_pred HHHHHHHHhcC-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHH
Q psy9220 380 CCQVGRLKESN-----LDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALIL 454 (464)
Q Consensus 380 ~~~~~~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i 454 (464)
..++.+.++.+ .+....++++|.++++.+.+++++|+|+|||+||..+++++++|||++...+++|++++++.++
T Consensus 402 a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~i 481 (680)
T PLN02312 402 ANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQV 481 (680)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHH
Confidence 77777766543 2356789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q psy9220 455 GRAITG 460 (464)
Q Consensus 455 ~r~l~~ 460 (464)
+|.+++
T Consensus 482 Ar~ll~ 487 (680)
T PLN02312 482 SKALLA 487 (680)
T ss_pred HHHHHH
Confidence 998864
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=4e-50 Score=419.75 Aligned_cols=353 Identities=24% Similarity=0.324 Sum_probs=302.9
Q ss_pred HHHHHhhcCCchhhhhhcCC------CC--hHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHH
Q psy9220 39 KSFCDAVLHPKIVEDFRHET------SD--VRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMY 109 (464)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~------~~--~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~ 109 (464)
.++++++ .|....+|+.+. +| +.++++.+.+.||+++ +|+ |||.|. .....+.+.++..+.+.+..+
T Consensus 38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGRR--HVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCcH--HHHHHHHHHHHhcchhccCcH
Confidence 3445555 677788887776 44 3567888999999999 775 776553 333445667777766555444
Q ss_pred HhhhhhHHHHHHhcCCHHHHHHHhHHHhcCC----ceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 110 SVQSSLVMGAIDKYGSDKQKAKYLPELAKGN----LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 110 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~----~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
.++. .++..|..+|+++|+ +||+++++|+ .++|+++|||++|| |+..++|+|+++
T Consensus 114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GS-------------------D~~~~~T~A~~~ 172 (418)
T cd01154 114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGS-------------------DLGANETTAERS 172 (418)
T ss_pred HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCccc-------------------chhhCeEEEEEC
Confidence 4443 466788899988865 6999999997 88999999999888 999999999987
Q ss_pred CCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEE
Q psy9220 186 PSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265 (464)
Q Consensus 186 ~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
+ +|+|+|||+|+|+|++ .||+++|+|++++.. ++.+++++
T Consensus 173 ~-g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~--------------------------------------~~~~gls~ 212 (418)
T cd01154 173 G-GGVYRLNGHKWFASAP-LADAALVLARPEGAP--------------------------------------AGARGLSL 212 (418)
T ss_pred C-CCcEEEEEEEEEecCc-ccCEEEEEEECCCCC--------------------------------------CCCCcEEE
Confidence 4 6789999999999999 999999999986431 23357899
Q ss_pred EEEeCCCC-----CeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy9220 266 FIIEKDTP-----GYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCF 339 (464)
Q Consensus 266 flV~~~~~-----Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al 339 (464)
|+||++.| ||++.+.|+++|+++++++++.|+|| .+++||..+ |+++....++..|+.+++.++|++++++
T Consensus 213 flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al 289 (418)
T cd01154 213 FLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRAL 289 (418)
T ss_pred EEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 99999999999999999999999998 478999877 9999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c------hhHHHHHHHHHHHHHHHH
Q psy9220 340 SMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLD--T------PEMISILKRNNCAKALDI 411 (464)
Q Consensus 340 ~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~--~------~~~~~~aK~~~~~~a~~v 411 (464)
+.+++|+++|++||++|+++|.+|++|++|.+++++++++++++++.++.... . ...++++|.++++.+.++
T Consensus 290 ~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~aK~~~~e~a~~v 369 (418)
T cd01154 290 SEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPV 369 (418)
T ss_pred HHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998886421 1 225678999999999999
Q ss_pred HHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhh
Q psy9220 412 ARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAIT 459 (464)
Q Consensus 412 ~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~ 459 (464)
++.+++++||.||.++++++|+|||+++..+++|++++++..+.|.+.
T Consensus 370 ~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 370 TSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999875
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.9e-49 Score=408.09 Aligned_cols=345 Identities=17% Similarity=0.158 Sum_probs=294.1
Q ss_pred HHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhH
Q psy9220 38 VKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLV 116 (464)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~ 116 (464)
++++++ .+++.+.+.|+.+.+| .++++.+++.||+++.+|+ |||.|+++.+...++|+|++.|+++++++..+. ..
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p-~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~ 79 (370)
T cd01159 3 AEDLAP-LIRERAPEAERARRLP-DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-TH 79 (370)
T ss_pred HHHHHH-HHHHhHHHHHHcCCCC-HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HH
Confidence 344444 3677788889999999 9999999999999999998 999999999999999999999999886554443 34
Q ss_pred HHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeE
Q psy9220 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196 (464)
Q Consensus 117 ~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~ 196 (464)
...+..+++++|++.|+++. .+. + .|+ ..+.|+|+++ ++||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~-~---------~g~---------------------~~~~t~A~~~--~~gy~lnG~ 125 (370)
T cd01159 80 SRMLAAFPPEAQEEVWGDGP-DTL-L---------AGS---------------------YAPGGRAERV--DGGYRVSGT 125 (370)
T ss_pred HHHHHhCCHHHHHHHhCCCC-Cce-E---------Eee---------------------ecCCceeEEe--CCeEEEecc
Confidence 45667788899998887642 111 0 011 2346788888 889999999
Q ss_pred EEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeE
Q psy9220 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYE 276 (464)
Q Consensus 197 K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~ 276 (464)
|.|||++..||+++|.|+++++ ++.+++++|+||++ ||+
T Consensus 126 K~~it~~~~ad~~~v~a~~~~~---------------------------------------~~~~~~~~~lV~~~--Gv~ 164 (370)
T cd01159 126 WPFASGCDHADWILVGAIVEDD---------------------------------------DGGPLPRAFVVPRA--EYE 164 (370)
T ss_pred ccCccCCCcCceeEeeeECCCC---------------------------------------CCCCcceEEEEEhH--HCE
Confidence 9999999999999999998543 12246899999987 999
Q ss_pred EeccCCccCCcccCeeEEEEceeEeCccCcccccc-------ChH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9220 277 TSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-------SYK---APFTLLNSARYGIAWGVLGAAEFCFSMARSYM 346 (464)
Q Consensus 277 i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-------g~~---~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~ 346 (464)
+.+.|+++|++++++++++|+||+||++++|+..+ ++. +........|+.+++.++|+++++++.+.+|+
T Consensus 165 ~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~ 244 (370)
T cd01159 165 IVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELA 244 (370)
T ss_pred EecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999997532 211 23345567889999999999999999999999
Q ss_pred hhhccc---CcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C---chhHHHHHHHHHHHHHHHHHHHH
Q psy9220 347 LDRVQF---NKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL-----D---TPEMISILKRNNCAKALDIARNA 415 (464)
Q Consensus 347 ~~R~~~---g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~-----~---~~~~~~~aK~~~~~~a~~v~~~a 415 (464)
++|.+| |++|+++|.+|+++++|.+++++++++++++++.++++. . ....++++|.++++.+.++++.+
T Consensus 245 ~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a 324 (370)
T cd01159 245 GKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSAEAVDRL 324 (370)
T ss_pred ccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 688999999999999999999999999999999887641 1 12457899999999999999999
Q ss_pred HHHhCcccccCcccHHHHHhhhccceeccChH-HHHHHHHHHHhhC
Q psy9220 416 RDMLGGNGISDEYHVIRHMNNLEVVNTYEGTS-DIHALILGRAITG 460 (464)
Q Consensus 416 ~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~-~~~~~~i~r~l~~ 460 (464)
++++||.||.++++++|+|||+++..+++|++ ++++..|+|.++|
T Consensus 325 ~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 325 FHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 99999999999999999999999999999999 9999999999986
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-48 Score=411.51 Aligned_cols=330 Identities=19% Similarity=0.243 Sum_probs=281.9
Q ss_pred hHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcC
Q psy9220 61 VRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKG 139 (464)
Q Consensus 61 ~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G 139 (464)
+.++++.+.+.|+.++.+++ +| .+. .....+..+-..-.....++++..+.++..+..+++++|+++|+|++++|
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~l~~~~~~g~~cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg 163 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDAR-SGA---FVARAARFMLHAQVEAGTLCPITMTFAATPLLLQMLPAPFQDWLTPLLSD 163 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccC-chH---HHHHHHHHHHHhhhhHHhhchHHHHHHHHHHHHhcCHHHHHHHHHHHhCC
Confidence 46777778889999999975 76 222 22222222222222223345555455666777889999999999999999
Q ss_pred C-------------ceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCC
Q psy9220 140 N-------------LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206 (464)
Q Consensus 140 ~-------------~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~A 206 (464)
+ .+.++++|||+.|| |+..++|+|++.+ +|+|+|||+|+||| ++.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GS-------------------Dv~~~~T~A~~~~-gg~w~LnG~K~fiS-a~~A 222 (538)
T PRK11561 164 RYDSHLLPGGQKRGLLIGMGMTEKQGGS-------------------DVLSNTTRAERLA-DGSYRLVGHKWFFS-VPQS 222 (538)
T ss_pred CcccccccchhhhhheeEEEecCCCCCC-------------------chhhCeeEEEECC-CCeEEEEEEEEEEE-chhh
Confidence 7 34567777777666 9999999999853 67899999999999 6999
Q ss_pred CEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCC-----CeEEeccC
Q psy9220 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTP-----GYETSVIK 281 (464)
Q Consensus 207 d~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~-----Gv~i~~~~ 281 (464)
|+++|+|+++ + ++++|+||++.| ||++...+
T Consensus 223 D~~lVlArt~-~-------------------------------------------Gls~FlVp~~~p~g~~nGv~i~rl~ 258 (538)
T PRK11561 223 DAHLVLAQAK-G-------------------------------------------GLSCFFVPRFLPDGQRNAIRLERLK 258 (538)
T ss_pred CEEEEEEEEC-C-------------------------------------------ceEEEEEECCCCCCCCCceEEeccc
Confidence 9999999985 3 589999999988 79999999
Q ss_pred CccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCc
Q psy9220 282 GKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQ 360 (464)
Q Consensus 282 ~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~ 360 (464)
+++|++++++++|+|+|| .+++||.++ |++.+...++..|+..++.++|+++++++.+++|+++|++||+||+++|
T Consensus 259 ~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q 335 (538)
T PRK11561 259 DKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQP 335 (538)
T ss_pred ccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCH
Confidence 999999999999999999 488999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHH
Q psy9220 361 IPQLKLANMLTDISLALVSCCQVGRLKESNLDT------PEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434 (464)
Q Consensus 361 ~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~------~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~ 434 (464)
.+|++|++|.+++++++++++++++.+|.+.+. ....+++|.++++.+.+++++++|++||+||.++++++|+|
T Consensus 336 ~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~ 415 (538)
T PRK11561 336 LMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLY 415 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHH
Confidence 999999999999999999999999999876422 23456899999999999999999999999999999999999
Q ss_pred hhhccceeccChHHHHHHHHHHHhhCCC
Q psy9220 435 NNLEVVNTYEGTSDIHALILGRAITGIQ 462 (464)
Q Consensus 435 rda~~~~~~~G~~~~~~~~i~r~l~~~~ 462 (464)
||++...+++|++++++..+.|.+.+.+
T Consensus 416 RDa~v~~I~eGt~~i~~ldv~r~l~~~~ 443 (538)
T PRK11561 416 REMPVNSIWEGSGNIMCLDVLRVLNKQP 443 (538)
T ss_pred HHHhhhhcccCCHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999998754
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.4e-47 Score=384.48 Aligned_cols=324 Identities=35% Similarity=0.506 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhhHH
Q psy9220 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMY 109 (464)
Q Consensus 30 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~ 109 (464)
+++++++.+++|+.+.+.+.....+.....+ + +.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~g~~----------------------------------- 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRETPEEP-W---ELLAELGLL----------------------------------- 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHhhCCCC-H---HHHHHHHHH-----------------------------------
Confidence 5678999999999999988777665555555 4 444555555
Q ss_pred HhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCC
Q psy9220 110 SVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSN 189 (464)
Q Consensus 110 ~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~ 189 (464)
+++..|..+|+++|+++||+++.+|+.++++++|||.+|| |...+.++++++ ++
T Consensus 43 -----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs-------------------~~~~~~~~a~~~--~~ 96 (327)
T cd00567 43 -----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGS-------------------DLAGIRTTARKD--GD 96 (327)
T ss_pred -----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCC-------------------chhhCEeEEEEe--CC
Confidence 2334577789999999999999999999999999999998 888899999998 88
Q ss_pred eEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEe
Q psy9220 190 SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIE 269 (464)
Q Consensus 190 g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~ 269 (464)
||+|||+|.|+|+++.||+++|.++++++. ++..++.+|+||
T Consensus 97 g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~--------------------------------------~~~~~~~~~lvp 138 (327)
T cd00567 97 GYVLNGRKIFISNGGDADLFIVLARTDEEG--------------------------------------PGHRGISAFLVP 138 (327)
T ss_pred EEEEEEEEEEecCCccCCEEEEEEEeCCCC--------------------------------------CCCCceEEEEEe
Confidence 999999999999999999999999986431 122367899999
Q ss_pred CCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9220 270 KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLD 348 (464)
Q Consensus 270 ~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~ 348 (464)
.+.||+++.+.|.++|++++++++++|+||+||++++++..+ ++......+...|+.+++.++|+++++++.+++|+++
T Consensus 139 ~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~ 218 (327)
T cd00567 139 ADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQ 218 (327)
T ss_pred CCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877 7777888899999999999999999999999999999
Q ss_pred hcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCc
Q psy9220 349 RVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLD-TPEMISILKRNNCAKALDIARNARDMLGGNGISDE 427 (464)
Q Consensus 349 R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~-~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~ 427 (464)
|.+||+|+.++|.+|++++++..++++++++++.+++.++.+.. ....++++|.++++.+.++++.+++++||.||.++
T Consensus 219 r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~ 298 (327)
T cd00567 219 RKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSRE 298 (327)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCC
Confidence 99999999999999999999999999999999999999987654 56788999999999999999999999999999999
Q ss_pred ccHHHHHhhhccceeccChHHHHHHHHHH
Q psy9220 428 YHVIRHMNNLEVVNTYEGTSDIHALILGR 456 (464)
Q Consensus 428 ~~l~r~~rda~~~~~~~G~~~~~~~~i~r 456 (464)
++++|+|||++...+++|++++++..+++
T Consensus 299 ~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 299 YPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred CHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 99999999999999999999999887753
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-46 Score=408.79 Aligned_cols=299 Identities=25% Similarity=0.326 Sum_probs=267.8
Q ss_pred chhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEE
Q psy9220 104 GYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAK 183 (464)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~ 183 (464)
+....+.+|..+....|..+|+++|+++|||++.+|++++|+++|||++|| |+..++|+|+
T Consensus 90 ~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGS-------------------dv~~leTtAt 150 (646)
T PTZ00460 90 QGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGS-------------------DVQNLETTAT 150 (646)
T ss_pred CCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccC-------------------CcccceEEEE
Confidence 333345666666667788899999999999999999999999999999999 9999999999
Q ss_pred EeCCCCeEEEE-----eEEEeecC-CCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCC
Q psy9220 184 YDPSSNSYIIT-----GSKTWISS-APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHG 257 (464)
Q Consensus 184 ~~~~~~g~~ln-----G~K~~vs~-~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
+++++++|+|| |.|+|+++ +..||+++|+|++..+
T Consensus 151 ~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~--------------------------------------- 191 (646)
T PTZ00460 151 YDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVN--------------------------------------- 191 (646)
T ss_pred EcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcC---------------------------------------
Confidence 98667899998 99999998 6899999999998633
Q ss_pred CCCCCeEEEEEeC-------CCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccc------cc-----C-hHHHHH
Q psy9220 258 PQNPQIRGFIIEK-------DTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLL------AN-----S-YKAPFT 318 (464)
Q Consensus 258 ~~~~~~~~flV~~-------~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~------~~-----g-~~~~~~ 318 (464)
.++.+++.|+||. ..|||++.++..++|+++.+++.+.||||+||.+++||. .+ | ++....
T Consensus 192 ~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~~ 271 (646)
T PTZ00460 192 GKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYA 271 (646)
T ss_pred CCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHHH
Confidence 1235789999993 249999999999999999999999999999999999985 22 2 667778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc------ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q psy9220 319 LLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK------PLAANQIPQLKLANMLTDISLALVSCCQVGRLKESN-- 390 (464)
Q Consensus 319 ~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~------~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~-- 390 (464)
.+..+|+.+++.++|++++|++.+++|+++|+|||+ ||++||.+|++|++|.+++++++.+++++++.++..
T Consensus 272 ~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~ 351 (646)
T PTZ00460 272 SMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFN 351 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888999999999999999999999999999999997 999999999999999999999999999999887652
Q ss_pred ----CC------chhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 391 ----LD------TPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 391 ----~~------~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
.+ ....++++|.++++.+.+++++|+|+|||+||..+++++++|||++...+++|++++++.+++|.+++
T Consensus 352 ~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~ 431 (646)
T PTZ00460 352 RVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLK 431 (646)
T ss_pred hhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHH
Confidence 12 24578999999999999999999999999999999999999999999999999999999999998764
No 37
>KOG1469|consensus
Probab=100.00 E-value=6.8e-48 Score=363.29 Aligned_cols=334 Identities=24% Similarity=0.367 Sum_probs=299.3
Q ss_pred HHHHHcCCCCCCCCC----CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhh--hhhHHHHHHhcCCHHHHHHHhHHHhcC
Q psy9220 66 AEFGRLGILGCTLRG----YGCAGASHISGGLVAREIERVDSGYRSMYSVQ--SSLVMGAIDKYGSDKQKAKYLPELAKG 139 (464)
Q Consensus 66 ~~l~~~Gl~~l~vP~----~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~--~~~~~~~l~~~g~~~q~~~~l~~l~~G 139 (464)
+..+.+|+|++++|. || .|+++.+++.++|.+++.--.- -.+..+ .+..+..+.+||+++||.+||-++.+|
T Consensus 34 E~aK~eGlWNLFlp~~~qkyg-~GLtnveYa~icElmGrs~~AP-eVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG 111 (392)
T KOG1469|consen 34 EMAKVEGLWNLFLPAVSQKYG-AGLTNVEYAHICELMGRSFFAP-EVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEG 111 (392)
T ss_pred HHHHhcchHHhhhHHHHHhhc-cCccchhHHHHHHHhccccccc-hhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcC
Confidence 344678999999983 55 9999999999999999842211 122222 245778899999999999999999999
Q ss_pred CceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCC--CCCCEEEEEEEecC
Q psy9220 140 NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA--PLADLCILWAKCED 217 (464)
Q Consensus 140 ~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~--~~Ad~~~v~A~~~~ 217 (464)
++..||++|||+..| ||..++++..+++ ++.|+|||+|+|+|++ |.|.+++++.+++.
T Consensus 112 ~irScFaMTEP~VAS------------------SDATNIe~SI~r~--~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~ 171 (392)
T KOG1469|consen 112 NIRSCFAMTEPDVAS------------------SDATNIECSIRRD--GDSYVINGKKWWISGAGDPKCRIAIFMGKTDN 171 (392)
T ss_pred CceeeEeecCCcccc------------------cccccceEEEEEc--CCEEEEecceeeecCCCCCceEEEEEecccCC
Confidence 999999999999887 6999999999999 9999999999999998 67999999999875
Q ss_pred CCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCccc--CeeEEE
Q psy9220 218 PTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRAS--VTGSIS 295 (464)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~--~~~~v~ 295 (464)
. .. +...+.++.|||.++|||+|..+.+.+|..+. +..+++
T Consensus 172 ~-~~------------------------------------~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~ 214 (392)
T KOG1469|consen 172 T-SA------------------------------------SRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIH 214 (392)
T ss_pred C-cc------------------------------------chhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEE
Confidence 4 22 33456788899999999999999999999887 466999
Q ss_pred EceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHH
Q psy9220 296 LDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDIS 374 (464)
Q Consensus 296 f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~ 374 (464)
|+||+||..|++..++ ||.+.+..+..+|+.+|+..+|.++++++...+.+.+|..||++|.++..+.+.+|+...+++
T Consensus 215 F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~sRveiE 294 (392)
T KOG1469|consen 215 FENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAESRVEIE 294 (392)
T ss_pred EEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHHHhHhh
Confidence 9999999999887777 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHH
Q psy9220 375 LALVSCCQVGRLKESN--LDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHAL 452 (464)
Q Consensus 375 ~~r~~~~~~~~~~d~~--~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~ 452 (464)
.+|.++.++++.+|.- +.....++|.|..+...+.++++.++|++||.|...++++.++|..+++.++.+|++++++.
T Consensus 295 qaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ 374 (392)
T KOG1469|consen 295 QARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLS 374 (392)
T ss_pred hhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchh
Confidence 9999999999999983 55677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy9220 453 ILGRAI 458 (464)
Q Consensus 453 ~i~r~l 458 (464)
.+++.-
T Consensus 375 ai~~le 380 (392)
T KOG1469|consen 375 AIAKLE 380 (392)
T ss_pred hhhhhh
Confidence 888753
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=9.2e-46 Score=402.27 Aligned_cols=316 Identities=21% Similarity=0.282 Sum_probs=280.0
Q ss_pred CHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCC
Q psy9220 87 SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGL 166 (464)
Q Consensus 87 ~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~ 166 (464)
++.+...+.|++++.|.+++..+.+|..+.+..|..+|+++|+++|||++.+|+.++|+++|||++||
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGS------------ 147 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGS------------ 147 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCc------------
Confidence 56788889999999998887667788777778899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEeCCCCeEEEE-----eEEEeecCCC-CCCEEEEEEEecCCCCCCCCCCccccccccCCCCCC
Q psy9220 167 TEPNAGSDVANMQTRAKYDPSSNSYIIT-----GSKTWISSAP-LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAP 240 (464)
Q Consensus 167 ~~~~~~~d~~~~~t~A~~~~~~~g~~ln-----G~K~~vs~~~-~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (464)
|+..++|+|+++++.++|+|| |.|+|+++++ .|++++|+|++..+
T Consensus 148 -------dv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~---------------------- 198 (610)
T cd01150 148 -------NLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITP---------------------- 198 (610)
T ss_pred -------CcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccC----------------------
Confidence 999999999999545899999 9999999986 59999999998533
Q ss_pred chhhhhhhhhcccCCCCCCCCCeEEEEEeCC-------CCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccc----
Q psy9220 241 LADLCILWAKCEDATHGPQNPQIRGFIIEKD-------TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLL---- 309 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~-------~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~---- 309 (464)
.++.++.+|+||.+ .|||++.+.+.++|+++.+++.+.||||+||.+++|+.
T Consensus 199 -----------------g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v 261 (610)
T cd01150 199 -----------------GKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDV 261 (610)
T ss_pred -----------------CCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhccccccc
Confidence 12347899999953 39999999999999999999999999999999999986
Q ss_pred ------------cc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-------cccCccHHHHHHHH
Q psy9220 310 ------------AN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKP-------LAANQIPQLKLANM 369 (464)
Q Consensus 310 ------------~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~-------l~~~~~i~~~la~~ 369 (464)
++ ++..+...+..+|+.+++.++|.+++|++.+++|+..|+|||.| |+++|.+|++|+++
T Consensus 262 ~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~ 341 (610)
T cd01150 262 SPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQ 341 (610)
T ss_pred CCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHH
Confidence 44 77888888999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHH----HHH---HHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhh
Q psy9220 370 LTDISLALVSCCQ----VGR---LKESNL-----DTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNL 437 (464)
Q Consensus 370 ~~~l~~~r~~~~~----~~~---~~d~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda 437 (464)
.++.++.+..... ..+ ..+++. +....++++|.++++.+.+++++|+|+|||+||..+++++++|||+
T Consensus 342 la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~ 421 (610)
T cd01150 342 LAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDN 421 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhc
Confidence 9999987643333 222 333331 2346789999999999999999999999999999999999999999
Q ss_pred ccceeccChHHHHHHHHHHHhhC
Q psy9220 438 EVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 438 ~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
+...++||++++++.+++|.+++
T Consensus 422 ~~~~t~EG~n~vl~~~iar~ll~ 444 (610)
T cd01150 422 DPFCTYEGDNTVLLQQTANYLLK 444 (610)
T ss_pred cceeeeecchHhHHHHHHHHHHH
Confidence 99999999999999999998875
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-44 Score=382.61 Aligned_cols=297 Identities=18% Similarity=0.196 Sum_probs=261.3
Q ss_pred HHHHc-CCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEE
Q psy9220 67 EFGRL-GILGCTLRG-YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144 (464)
Q Consensus 67 ~l~~~-Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~ 144 (464)
.++++ ||+++.+|+ |||.|+++.+...++|++++.+.+....+..|..++...+..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 57789 999999998 9999999999999999999988776544445555666678889999999999999999999999
Q ss_pred EeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCC
Q psy9220 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQN 224 (464)
Q Consensus 145 ~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~ 224 (464)
+++|| +.|| |+..+.|+|++++ +|+|+|||+|.|+ +++.||+++|+|++++...
T Consensus 138 ~AltE-~aGS-------------------D~a~i~TtA~~~~-gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~---- 191 (520)
T PTZ00457 138 WATEE-GCGS-------------------DISMNTTKASLTD-DGSYVLTGQKRCE-FAASATHFLVLAKTLTQTA---- 191 (520)
T ss_pred EEeCC-CCCC-------------------ccccceeEEEEcC-CCeEEEEEEEEEE-cCchhcEEEEEeecCCccc----
Confidence 99988 8888 8889999999863 5689999999966 8999999999999853200
Q ss_pred CCccccccccCCCCCCchhhhhhhhhcccCCCC-CCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCc
Q psy9220 225 PQIRGFIIEKDTPGAPLADLCILWAKCEDATHG-PQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQ 303 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~ 303 (464)
+ ..+ ...+++++|+||.+.|||++.. ++++|||| |.
T Consensus 192 ----------------------------~-~~g~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~ 228 (520)
T PTZ00457 192 ----------------------------A-EEGATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PA 228 (520)
T ss_pred ----------------------------c-cccccCcCceEEEEEECCCCceEEec------------CEEEECCC--CH
Confidence 0 000 0124689999999999999863 59999997 99
Q ss_pred cCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHH
Q psy9220 304 DQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQ 382 (464)
Q Consensus 304 ~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~ 382 (464)
+++||..+ |++.....++.+|+.+++.++|+++++++.+++|++ +|.+|+++|+|.++++++|+++|+
T Consensus 229 ~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaVq~~LAdma~~ieAarsl~y~ 297 (520)
T PTZ00457 229 ADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGATDTVASFACAMYAMESTLYA 297 (520)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 999999999999999999999999999999999986 389999999999999999999999
Q ss_pred HHHHHhcC-CCchhHHHHHHHHHH---HHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHH
Q psy9220 383 VGRLKESN-LDTPEMISILKRNNC---AKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHA 451 (464)
Q Consensus 383 ~~~~~d~~-~~~~~~~~~aK~~~~---~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~ 451 (464)
+++.+|++ .+...+++++|++++ +.+++++++++| +++|+||++||++.+.+++|++++++
T Consensus 298 AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 298 LTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999997 567889999999999 888888888877 89999999999999999999999998
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.5e-43 Score=382.30 Aligned_cols=294 Identities=24% Similarity=0.328 Sum_probs=258.9
Q ss_pred HHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCC
Q psy9220 109 YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188 (464)
Q Consensus 109 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~ 188 (464)
+.+|..+.+..|..+|+++|+++|||++.+|++++||++|||++|| |+..++|+|++++++
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGS-------------------dv~~leTtAt~d~~~ 159 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGS-------------------NVQGLETTATFDPKT 159 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCccc-------------------chhhCeEEEEEeCCC
Confidence 4566656667788899999999999999999999999999999999 999999999999777
Q ss_pred CeEEEE-----eEEEeecCC-CCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC
Q psy9220 189 NSYIIT-----GSKTWISSA-PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262 (464)
Q Consensus 189 ~g~~ln-----G~K~~vs~~-~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
++|+|| |.|+|++++ ..||+++|+|++..+ .++.+
T Consensus 160 ~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~---------------------------------------~~~~G 200 (664)
T PLN02443 160 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITN---------------------------------------GKDHG 200 (664)
T ss_pred CEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCC---------------------------------------CCCCC
Confidence 899998 999999997 689999999998533 12357
Q ss_pred eEEEEEeCC-------CCCeEEeccCCccC---CcccCeeEEEEceeEeCccCccccc-----cCh--------HHHHHh
Q psy9220 263 IRGFIIEKD-------TPGYETSVIKGKFG---LRASVTGSISLDNVRVSQDQMLLLA-----NSY--------KAPFTL 319 (464)
Q Consensus 263 ~~~flV~~~-------~~Gv~i~~~~~~~G---~~~~~~~~v~f~nv~Vp~~~llg~~-----~g~--------~~~~~~ 319 (464)
+..|+||.+ .|||++.+++.++| +++.+++.+.|+||+||.+++||.. +|. +.....
T Consensus 201 v~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~ 280 (664)
T PLN02443 201 IHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGT 280 (664)
T ss_pred eEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHH
Confidence 899999975 79999999999999 5668999999999999999999853 121 244567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--cCccH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy9220 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLA--ANQIP-----QLKLANMLTDISLALVSCCQVGRLKES--- 389 (464)
Q Consensus 320 l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~--~~~~i-----~~~la~~~~~l~~~r~~~~~~~~~~d~--- 389 (464)
+..+|+.+++.++|++++|++.+++|+.+|+|||.|++ ++|.+ |++|+++.+.+++++.+.+++++.++.
T Consensus 281 l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~ 360 (664)
T PLN02443 281 MVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999987 55555 999999999999999999999887753
Q ss_pred ---CCC------chhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 390 ---NLD------TPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 390 ---~~~------~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
..+ ....++++|.++++.+.+++++|+|+|||+||..++++++++||++...+++|++++++.+++|.+++
T Consensus 361 ~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 361 RLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred hhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHH
Confidence 111 23347999999999999999999999999999999999999999999999999999999999998764
No 41
>KOG0135|consensus
Probab=100.00 E-value=1.3e-32 Score=281.04 Aligned_cols=315 Identities=23% Similarity=0.376 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCC
Q psy9220 88 HISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLT 167 (464)
Q Consensus 88 ~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~ 167 (464)
......+.|.++.+|.+++.-+.+|..+...++...|++..++ |+..+-+-+.++|||+||.+|||
T Consensus 104 ~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGS------------- 169 (661)
T KOG0135|consen 104 ELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGS------------- 169 (661)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCc-------------
Confidence 4578889999999999999999999989889999999999888 99999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEeCCCCeEEEE-----eEEEeecCCC-CCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCc
Q psy9220 168 EPNAGSDVANMQTRAKYDPSSNSYIIT-----GSKTWISSAP-LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPL 241 (464)
Q Consensus 168 ~~~~~~d~~~~~t~A~~~~~~~g~~ln-----G~K~~vs~~~-~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
++..++|+|+++|..+.|+|| ..|.||.|++ +|++.+|+|++.-+
T Consensus 170 ------Nt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~----------------------- 220 (661)
T KOG0135|consen 170 ------NTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVP----------------------- 220 (661)
T ss_pred ------cccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeec-----------------------
Confidence 999999999999988999999 5899999975 79999999998644
Q ss_pred hhhhhhhhhcccCCCCCCCCCeEEEEEeCC-------CCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc---
Q psy9220 242 ADLCILWAKCEDATHGPQNPQIRGFIIEKD-------TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN--- 311 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~flV~~~-------~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~--- 311 (464)
.++.++..|||+.. .|||+|.++-.+.|++|..+|.+.|+||++|.+++|...+
T Consensus 221 ----------------g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVt 284 (661)
T KOG0135|consen 221 ----------------GQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVT 284 (661)
T ss_pred ----------------CccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcC
Confidence 24568889999843 4899999999999999999999999999999999995422
Q ss_pred --C------------hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------cccccCccHHHHHHHHH
Q psy9220 312 --S------------YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFN-------KPLAANQIPQLKLANML 370 (464)
Q Consensus 312 --g------------~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g-------~~l~~~~~i~~~la~~~ 370 (464)
| +-.....+..+|++++..++|.++-++.+|++|+..|+||| .+|.++|.-|.+|--+.
T Consensus 285 pDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~L 364 (661)
T KOG0135|consen 285 PDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYL 364 (661)
T ss_pred CCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHH
Confidence 2 23345568899999999999999999999999999999998 36889999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhc----------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccc
Q psy9220 371 TDISLALVSCCQVGRLKES----------NLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVV 440 (464)
Q Consensus 371 ~~l~~~r~~~~~~~~~~d~----------~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~ 440 (464)
+...+.+-........+.+ .++....++-.|.+++....++.++|.+.|||+||...+.+..+-.|-...
T Consensus 365 Aaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~ 444 (661)
T KOG0135|consen 365 AAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPF 444 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCcc
Confidence 8887776655554433322 134566788999999999999999999999999999999999999999999
Q ss_pred eeccChHHHHHHHHHHHhhCC
Q psy9220 441 NTYEGTSDIHALILGRAITGI 461 (464)
Q Consensus 441 ~~~~G~~~~~~~~i~r~l~~~ 461 (464)
.+|||.|.++..++++.|++.
T Consensus 445 ~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 445 QTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred ceeecCceeHHHHHHHHHHHH
Confidence 999999999999999998863
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.94 E-value=1.7e-25 Score=236.32 Aligned_cols=241 Identities=16% Similarity=0.121 Sum_probs=200.5
Q ss_pred HHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCC
Q psy9220 128 QKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLAD 207 (464)
Q Consensus 128 q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad 207 (464)
--++|+..+.+.++..+.+++.|. |. |++.+.|.. |... ..++++.. ++||+|||.|.|+|++ .||
T Consensus 128 n~~~y~~~~~~~dl~~~~a~~dp~-~d-------Rs~~~~~~~---d~~~-~~~Vve~~-~dGiVV~GaK~~~T~~-~ad 193 (477)
T TIGR02309 128 NVRNYYEYLRDNDLALTHALTNPQ-VN-------RAKPPSEQP---DPYI-ALGVVEQT-DKGVIVRGARMTATFP-IAD 193 (477)
T ss_pred HHHHHHHHHHHhCceeeccccCCC-CC-------CCCChhhcC---CCCc-ceeEEEEc-CCCEEEeCHHHhhhhc-ccc
Confidence 367899999999999999999999 33 566666654 5432 33444442 8899999999999996 999
Q ss_pred EEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCC-CCCCeEEEEEeCCCCCeEEeccCCccCC
Q psy9220 208 LCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGP-QNPQIRGFIIEKDTPGYETSVIKGKFGL 286 (464)
Q Consensus 208 ~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~flV~~~~~Gv~i~~~~~~~G~ 286 (464)
+++|++++.... ++ .++-.+.|+||.|+||+++..+..++|.
T Consensus 194 ~~~V~~~~~~~~-------------------------------------~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~ 236 (477)
T TIGR02309 194 EILIFPSTVLKA-------------------------------------GAEKDPYALAFAIPTNTPGLHFVCREALDGG 236 (477)
T ss_pred eEEEeccCCCCC-------------------------------------ccCCCCeEEEEEeeCCCCceEEEeCCccCCC
Confidence 999999875430 01 1112688999999999999999888998
Q ss_pred ccc-----------CeeEEEEceeEeCccCc--cccc---c-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9220 287 RAS-----------VTGSISLDNVRVSQDQM--LLLA---N-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDR 349 (464)
Q Consensus 287 ~~~-----------~~~~v~f~nv~Vp~~~l--lg~~---~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R 349 (464)
++. ..+.+.||||+||+|+| +|.. + ++.... .++..++.++|.+.++++.++.|++.
T Consensus 237 ~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~- 310 (477)
T TIGR02309 237 DSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG-----AVNHMAHQVVALKIAKTEAFLGVAAL- 310 (477)
T ss_pred CCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 876 77999999999999999 7765 3 343332 23667899999999999999999999
Q ss_pred cccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q psy9220 350 VQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL-----DTPEMISILKRNNCAKALDIARNARDMLGGNGI 424 (464)
Q Consensus 350 ~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~ 424 (464)
.+|++++.++|++|++|++|.+.++++|+++++++...+.+. +....++++|.++++...++. +++|++||.|+
T Consensus 311 ~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~ 389 (477)
T TIGR02309 311 MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGL 389 (477)
T ss_pred HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcE
Confidence 999999999999999999999999999999999999988743 456789999999999999995 99999999998
Q ss_pred cC
Q psy9220 425 SD 426 (464)
Q Consensus 425 ~~ 426 (464)
..
T Consensus 390 ~~ 391 (477)
T TIGR02309 390 IT 391 (477)
T ss_pred Ee
Confidence 63
No 43
>KOG0136|consensus
Probab=99.92 E-value=4.4e-24 Score=223.28 Aligned_cols=297 Identities=19% Similarity=0.234 Sum_probs=244.3
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEe
Q psy9220 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYD 185 (464)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~ 185 (464)
...+.+|..+....|..-++++|.++||++..+.++++|+|.||-+||+ ++..++|+|+++
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGT-------------------nl~~LET~AtyD 168 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGT-------------------NLRGLETTATYD 168 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccc-------------------cccccceeeeec
Confidence 3456778777777888999999999999999999999999999999999 999999999999
Q ss_pred CCCCeEEEE-----eEEEeecCC-CCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCC
Q psy9220 186 PSSNSYIIT-----GSKTWISSA-PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259 (464)
Q Consensus 186 ~~~~g~~ln-----G~K~~vs~~-~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
+..+.|+|| ..|||..+. ..++|.+|+|++--. ..
T Consensus 169 ~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~---------------------------------------gk 209 (670)
T KOG0136|consen 169 PKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITK---------------------------------------GK 209 (670)
T ss_pred CCcceEEecCCCcceecccCCccccccchheeeeeeeec---------------------------------------cc
Confidence 988899998 799998886 569999999997433 12
Q ss_pred CCCeEEEEEeCC-------CCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-----Ch-------HHHHHhh
Q psy9220 260 NPQIRGFIIEKD-------TPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-----SY-------KAPFTLL 320 (464)
Q Consensus 260 ~~~~~~flV~~~-------~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-----g~-------~~~~~~l 320 (464)
..++..|+||.. .|||.++++..++|..+..+|-+.|+||+||.+++|.+-. |. +.....+
T Consensus 210 ~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tM 289 (670)
T KOG0136|consen 210 CYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTM 289 (670)
T ss_pred ccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccceeee
Confidence 346788999964 4899999999999999999999999999999999995421 21 2222233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------cccccCccHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy9220 321 NSARYGIAWGVLGAAEFCFSMARSYMLDRVQFN-------KPLAANQIPQLKLANMLTDISL-------ALVSCCQVGRL 386 (464)
Q Consensus 321 ~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g-------~~l~~~~~i~~~la~~~~~l~~-------~r~~~~~~~~~ 386 (464)
-..|..+.....-....|..+|.+|+..|+|+. ..|.|||.-|.+|=-..+..++ ++.+..++.+.
T Consensus 290 v~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~ 369 (670)
T KOG0136|consen 290 VYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKE 369 (670)
T ss_pred EEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666778899999999999985 2478999999996544444333 34455566666
Q ss_pred HhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhC
Q psy9220 387 KESNL-----DTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 387 ~d~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
++++. +....++-.|..++..+..-+++|...|||+||..-+.+..+|-++-...+|||.|.++.++++|+|.+
T Consensus 370 l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmK 448 (670)
T KOG0136|consen 370 LENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVK 448 (670)
T ss_pred HhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHH
Confidence 66653 345678899999999999999999999999999999999999999999999999999999999999864
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.89 E-value=8e-22 Score=176.27 Aligned_cols=148 Identities=26% Similarity=0.354 Sum_probs=144.6
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9220 312 SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL 391 (464)
Q Consensus 312 g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~ 391 (464)
|+.++...+..+|+.+++.++|.++.+++.+.+|+++|++||+++.++|.++.+++++..+++++++++++++..++.+.
T Consensus 3 G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~ 82 (150)
T PF00441_consen 3 GWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAGQ 82 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhh
Q psy9220 392 DTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAIT 459 (464)
Q Consensus 392 ~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~ 459 (464)
.....++++|.++++.+.++++.+++++|+.||.++++++++|||++...+++|++++++..|+|++|
T Consensus 83 ~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 83 NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 77889999999999999999999999999999999999999999999999999999999999999985
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.69 E-value=6e-17 Score=138.18 Aligned_cols=112 Identities=31% Similarity=0.525 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCchh
Q psy9220 28 TQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSGYR 106 (464)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~~~ 106 (464)
|++++++++.+++|+++++.|...+.|..+.+| +++|+++.+.||+++.+|+ |||.|+++.+...++++++++|.+++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~ 79 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFP-REVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLA 79 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCH-HHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCC-HHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccccc
Confidence 578999999999999999999989998888999 9999999999999999998 99999999999999999999999988
Q ss_pred hHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCC
Q psy9220 107 SMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGN 140 (464)
Q Consensus 107 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~ 140 (464)
+.+.+|..+++..|..+|+++||++|||++++|+
T Consensus 80 ~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 80 FALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred chhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 8788887777789999999999999999999996
No 46
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.56 E-value=7.8e-13 Score=136.07 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=174.7
Q ss_pred HHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCC
Q psy9220 128 QKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLAD 207 (464)
Q Consensus 128 q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad 207 (464)
--.+|+.++.+.++..+.|+|.|.. - |++.++|.. |. .+-.+++... ++|.+|+|.|..+|+++.+|
T Consensus 132 n~~~~~k~vqk~DL~~~hA~tdpk~-d-------Rsk~p~e~~---dp-diyvrVvee~-~dGIVVrGAK~~aT~~a~td 198 (493)
T COG2368 132 NAREYYKEVQKNDLALTHAITDPKG-D-------RSKRPSEQK---DP-DIYVRVVEET-EDGIVVRGAKALATGSALTD 198 (493)
T ss_pred HHHHHHHHHHhcCceeeeceecCCc-c-------CCCChhhcc---CC-CeeEEEEEEe-cCceEEEChHHHhccccccc
Confidence 4678999999999999999999983 2 677777766 53 3344444443 78999999999999999999
Q ss_pred EEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCC-CCeEEEEEeCCCCCeEEeccCCc---
Q psy9220 208 LCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN-PQIRGFIIEKDTPGYETSVIKGK--- 283 (464)
Q Consensus 208 ~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~flV~~~~~Gv~i~~~~~~--- 283 (464)
..+|+-...-. +.+ +--..|.||.|+||+++..+...
T Consensus 199 ei~V~Pt~~~~---------------------------------------~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~ 239 (493)
T COG2368 199 EIFVLPTRSMQ---------------------------------------EDDKDFAVAFAIPMDTEGVKFICRRSYELG 239 (493)
T ss_pred eEEEeeccccC---------------------------------------CCCCceEEEEEcccCCCceEEEecCcchhh
Confidence 99999432111 111 23456999999999998766421
Q ss_pred cCCccc------------CeeEEEEceeEeCccCcccccc-----ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9220 284 FGLRAS------------VTGSISLDNVRVSQDQMLLLAN-----SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYM 346 (464)
Q Consensus 284 ~G~~~~------------~~~~v~f~nv~Vp~~~llg~~~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~ 346 (464)
-|+.+. ..+-+.||||+||+|+++--.. .+.....+....|...+.+-.+.....+..+..-+
T Consensus 240 ~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~ 319 (493)
T COG2368 240 RGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIA 319 (493)
T ss_pred cccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 121122 2234999999999999985433 22222333344555555555666665555555444
Q ss_pred hhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy9220 347 LDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNL-----DTPEMISILKRNNCAKALDIARNARDMLGG 421 (464)
Q Consensus 347 ~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 421 (464)
+. ..+.++++||++|+||.+-.+.++++...++.....+. +....+..+|.++.+.-.++.+.+.++.||
T Consensus 320 ~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg 394 (493)
T COG2368 320 ET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGG 394 (493)
T ss_pred Hh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcC
Confidence 43 45678999999999999999999999998888776543 567789999999999999999999998887
Q ss_pred cccc
Q psy9220 422 NGIS 425 (464)
Q Consensus 422 ~g~~ 425 (464)
.-.+
T Consensus 395 ~~i~ 398 (493)
T COG2368 395 GIIT 398 (493)
T ss_pred ceee
Confidence 5443
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.55 E-value=6.1e-14 Score=123.94 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--cCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCc----h
Q psy9220 325 YGIAWGVLGAAEFCFSMARSYMLDRVQ--FNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKES----NLDT----P 394 (464)
Q Consensus 325 ~~~aa~~~G~a~~al~~a~~~~~~R~~--~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~----~~~~----~ 394 (464)
+.+++.++|+++++++++.++++.|.. .+.++.+.+.+|.+++++...+++++++++++++.+++ +... .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468999999999999999999999987 67899999999999999999999999999999998553 3321 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChH
Q psy9220 395 EMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTS 447 (464)
Q Consensus 395 ~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~ 447 (464)
......|.++.+.+.++++.+++++|+.++..++|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 45678899999999999999999999999999999999999999998887654
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.48 E-value=9.3e-12 Score=132.06 Aligned_cols=236 Identities=10% Similarity=0.072 Sum_probs=165.1
Q ss_pred HHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCC
Q psy9220 127 KQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206 (464)
Q Consensus 127 ~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~A 206 (464)
+--++|+..+.+.++..+.+++.|. |. |++...|.+ |.. ..+++.. ++|.+|+|.|...|+++.+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk-~D-------Rsk~p~e~~---D~~---v~VVee~-~dGIVVrGAK~~aT~a~~a 200 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPP-ID-------RNKPIDQVK---DVY---IKIEEER-DDGIVVSGAKVVATNSALT 200 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCC-CC-------CCCccccCC---CCc---eEEEEEc-CCcEEEeCHHHHhcccchh
Confidence 3467899999999999999999999 33 556666532 432 2444442 7899999999999999999
Q ss_pred CEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCC-eEEEEEeCCCCCeEEeccCCccC
Q psy9220 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ-IRGFIIEKDTPGYETSVIKGKFG 285 (464)
Q Consensus 207 d~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~flV~~~~~Gv~i~~~~~~~G 285 (464)
|.++|.-....-. +. +++ -..|.||.|+||+++..+... .
T Consensus 201 ~ei~V~~~~~~~~-------------------------------------~~-d~dyAvaFavP~dtpGlk~IcR~s~-~ 241 (519)
T TIGR02310 201 HYNFIGFGSAQII-------------------------------------GD-NDDFALMFIAPMDAEGVKLICRHSY-E 241 (519)
T ss_pred cceeeccCccccc-------------------------------------CC-CCCeEEEEEeEcCCCceEEEeCCch-h
Confidence 9999853221000 01 123 356899999999999876422 1
Q ss_pred Cc----------------ccCeeEEEEceeEeCccCcccccc-----ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9220 286 LR----------------ASVTGSISLDNVRVSQDQMLLLAN-----SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344 (464)
Q Consensus 286 ~~----------------~~~~~~v~f~nv~Vp~~~llg~~~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 344 (464)
+. +-.-+-+.||||+||+|+|+--.+ .+.....+....-...+...++.++..+..+..
T Consensus 242 ~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~~~~~~q~~~r~~~k~dfl~G~a~~ 321 (519)
T TIGR02310 242 LVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGFARLFPMQACTRLAVKLDFITGLLHK 321 (519)
T ss_pred hccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 113457899999999999995433 122222222222223333556666666666666
Q ss_pred HhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9220 345 YMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESN-----LDTPEMISILKRNNCAKALDIARNARDML 419 (464)
Q Consensus 345 ~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~~~ 419 (464)
-+.. ..+..+++||++|++|..-.+..++++..+....... .+.......+|.+.++.-.++.+.+.+..
T Consensus 322 ~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ 396 (519)
T TIGR02310 322 ALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTV 396 (519)
T ss_pred HHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 5554 4567899999999999999999999998887765543 25566789999999999999999887655
Q ss_pred Cc
Q psy9220 420 GG 421 (464)
Q Consensus 420 Gg 421 (464)
||
T Consensus 397 ag 398 (519)
T TIGR02310 397 TS 398 (519)
T ss_pred cC
Confidence 53
No 49
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.44 E-value=2.6e-13 Score=100.34 Aligned_cols=50 Identities=42% Similarity=0.773 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEec
Q psy9220 165 GLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCE 216 (464)
Q Consensus 165 ~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~ 216 (464)
+++||..|+|+.+++|+|+++ +++|+|||+|+||++++.||+++|+||++
T Consensus 3 a~tE~~~g~d~~~~~t~a~~~--~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 3 ALTEPGAGSDLAAVETTARRD--GDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp E--BTTBSSSGGG-SSEEEEE--TTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred EEcCCCCCCCcccCEEEeecc--cceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 333333444999999999999 88999999999999999999999999983
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.90 E-value=1.3e-08 Score=99.70 Aligned_cols=128 Identities=18% Similarity=0.304 Sum_probs=81.8
Q ss_pred HHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCC
Q psy9220 127 KQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206 (464)
Q Consensus 127 ~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~A 206 (464)
+-.++|+..+.+.++..+.+++.|.. . |+...+++ |. .+-.++++.. ++|.+|+|.|...|+++.+
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~-D-------Rs~~~~q~----d~-d~~lrVVee~-~dGIvVrGAK~~~T~a~~a 188 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQG-D-------RSKPPHQE----DP-DVYLRVVEET-DDGIVVRGAKMLATGAPYA 188 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SS-S-------TTSTGGSS----SC-CSB-EEEEE--SSEEEEEEEEEEEETGCCS
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCc-C-------CCCCcccc----CC-CceEEEEEEc-CCCEEEeChhhhhcCCccc
Confidence 34678899999999999999999993 2 44455311 11 1233444432 7899999999999999999
Q ss_pred CEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCC-CCeEEEEEeCCCCCeEEeccCCccC
Q psy9220 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN-PQIRGFIIEKDTPGYETSVIKGKFG 285 (464)
Q Consensus 207 d~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~flV~~~~~Gv~i~~~~~~~G 285 (464)
|.++|+-...-. +++ +-...|.||.++||+++..+.....
T Consensus 189 dei~V~p~~~~~---------------------------------------~~d~dyAv~FavP~~tpGlk~i~R~s~~~ 229 (264)
T PF11794_consen 189 DEILVFPTRAMR---------------------------------------PGDEDYAVAFAVPMNTPGLKIICRESYAD 229 (264)
T ss_dssp SEEEE--SSSST---------------------------------------TCCGGG-EEEEEETT-TTEEEEE---TTG
T ss_pred ccEEEeeccCCC---------------------------------------CCCCceEEEEEccCCCCCEEEEeCCCCCC
Confidence 999999644311 112 2346799999999999987754333
Q ss_pred Cccc------------CeeEEEEceeEeCccCcc
Q psy9220 286 LRAS------------VTGSISLDNVRVSQDQML 307 (464)
Q Consensus 286 ~~~~------------~~~~v~f~nv~Vp~~~ll 307 (464)
.+.+ .-+-+.||||+||+|+|+
T Consensus 230 ~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 230 GRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 3311 345789999999999986
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=94.86 E-value=0.7 Score=43.94 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=58.5
Q ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchhHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Q psy9220 354 KPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESN-----LDTPEMISILKRNNCAKALDIARNARDMLGGNGIS 425 (464)
Q Consensus 354 ~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~ 425 (464)
..+.++++||++|+||...++.+++++..+......+ .+.......+|.+.++...++++.+.++.||.=+.
T Consensus 42 ~G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~ 118 (205)
T PF03241_consen 42 NGIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT 118 (205)
T ss_dssp TTGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 4567899999999999999999999999887766542 25667899999999999999999888888776554
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=84.73 E-value=9.8 Score=41.39 Aligned_cols=87 Identities=9% Similarity=-0.017 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy9220 337 FCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDT-PEMISILKRNNCAKALDIARNA 415 (464)
Q Consensus 337 ~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~-~~~~~~aK~~~~~~a~~v~~~a 415 (464)
.-|..++++...| +|+.|.+.|.+..+|+++.++++++-+.+-++-+.+.++.+. ..+..+++.+|.+...++-..+
T Consensus 416 ~~~~~~v~~~~~~--~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~ 493 (520)
T PTZ00457 416 VAFGNAVEATFVR--SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLS 493 (520)
T ss_pred HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 468899999999999999999999999999998888877544 3346799999999988888877
Q ss_pred HHHhCcccccC
Q psy9220 416 RDMLGGNGISD 426 (464)
Q Consensus 416 ~~~~Gg~g~~~ 426 (464)
-++... ++..
T Consensus 494 ~~~~~~-~~~~ 503 (520)
T PTZ00457 494 EESCNV-GKTA 503 (520)
T ss_pred HHHhcc-Cccc
Confidence 787776 5444
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=83.45 E-value=1 Score=39.02 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCce
Q psy9220 108 MYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142 (464)
Q Consensus 108 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~ 142 (464)
.+.+|..+....|...||++|+++|+|+..+.+++
T Consensus 91 p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 91 PLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred hhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 45588888888999999999999999998877653
No 54
>KOG0137|consensus
Probab=64.03 E-value=74 Score=34.91 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred cCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q psy9220 352 FNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLD-TPEMISILKRNNCAKALDIARNARDMLGG 421 (464)
Q Consensus 352 ~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~-~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 421 (464)
+|+.|.+.|.+-+++|+..+.++++-+.+-+|-+..-.+.+ ..-+...++++|++...++.+.+-++.++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999998877754 34578999999999999888888777766
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=28.52 E-value=5.1e+02 Score=29.88 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=61.5
Q ss_pred cCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccHH
Q psy9220 352 FNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431 (464)
Q Consensus 352 ~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~ 431 (464)
.|..|...|.+..+|+++.+.++++-+.+.++- +++.+.. ...+++.++.+...++-+..-++..... .-.+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEA-DLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 467888999999999999999999988776665 3333322 2445555444433333332324433322 22244
Q ss_pred HHHhhhc--cceeccChHHHHHHHHHHHhhC
Q psy9220 432 RHMNNLE--VVNTYEGTSDIHALILGRAITG 460 (464)
Q Consensus 432 r~~rda~--~~~~~~G~~~~~~~~i~r~l~~ 460 (464)
..+|-.- ....+.++++-+..++++.+..
T Consensus 632 ~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 4444332 2334667888888888887763
Done!