RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9220
(464 letters)
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 559 bits (1443), Expect = 0.0
Identities = 237/450 (52%), Positives = 297/450 (66%), Gaps = 64/450 (14%)
Query: 15 FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGIL 74
FNWED LN+ LLT+EE+ +RD+ + FC L P+++E +R E D R I E G LG+L
Sbjct: 1 FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFD-RKIIEEMGELGLL 59
Query: 75 GCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLP 134
G T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I +GS++QK KYLP
Sbjct: 60 GATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLP 119
Query: 135 ELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIIT 194
+LA G LIGCFGLTEPN GSD G M+TRA+ D Y +
Sbjct: 120 KLASGELIGCFGLTEPNHGSD---------------PGG----METRARKD--GGGYKLN 158
Query: 195 GSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
GSKTWI+++P+AD+ ++WA+ ++
Sbjct: 159 GSKTWITNSPIADVFVVWARNDE------------------------------------- 181
Query: 255 THGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYK 314
+IRGFI+E+ G I+GKF LRAS+TG I +DNV V ++ +L A +
Sbjct: 182 -----TGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLR 236
Query: 315 APFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDIS 374
PF LN+ARYGIAWG LGAAE C+ AR Y+LDR QF +PLAA Q+ Q KLA+MLT+I+
Sbjct: 237 GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIA 296
Query: 375 LALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434
L L++C +VGRLK+ TPE IS+LKRNNC KAL+IAR AR+MLGGNGISDEYH+IRHM
Sbjct: 297 LGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHM 356
Query: 435 NNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 357 VNLESVNTYEGTHDIHALILGRAITGIQAF 386
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 265 bits (680), Expect = 6e-85
Identities = 132/445 (29%), Positives = 201/445 (45%), Gaps = 64/445 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV--RAIYAEFGRLGILGCTL-RGYGC 83
L++E++ LR V+ F + L P+ E R + R + G+LG T+ YG
Sbjct: 5 LSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGG 64
Query: 84 AGASHISGGLVAREIERVDSGYRSMYSVQSS---LVMGAIDKYGSDKQKAKYLPELAKGN 140
G S + V E+ R D+G + + I ++G+++QK +YLP LA G
Sbjct: 65 LGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGE 124
Query: 141 LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWI 200
LIG F LTEP AGSD+A+++T T A D Y++ G K WI
Sbjct: 125 LIGAFALTEPGAGSDLASLRT------------------TAAVRD--DGDYVLNGQKIWI 164
Query: 201 SSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN 260
S+AP+AD ++ A+ ++ I F++ KD
Sbjct: 165 SNAPVADWLLVLAR--TDPAPGKHKGISLFLVPKD------------------------- 197
Query: 261 PQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTL 319
TPG I K GLR S TG + D+VRV + +L +K
Sbjct: 198 ----------LTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMET 247
Query: 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVS 379
LN R GIA LG AE A +Y +R QF +P+A Q+ Q KLA+M ++ A +
Sbjct: 248 LNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLL 307
Query: 380 CCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEV 439
+ L ++ D ++ K AL++A A + GG G ++EY V R+ + +
Sbjct: 308 VLRAAELADAGDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARI 367
Query: 440 VNTYEGTSDIHALILGRAITGIQAF 464
+ YEGTS+I LI+ R + G+ A
Sbjct: 368 LRIYEGTSEIQRLIIARRLLGLPAG 392
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 235 bits (600), Expect = 7e-73
Identities = 141/446 (31%), Positives = 208/446 (46%), Gaps = 64/446 (14%)
Query: 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL 78
D LLT EE+ LR V+ + + P + E + I + G LGI G T+
Sbjct: 21 DYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHII-PKLGSLGIAGGTI 79
Query: 79 RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAK 138
+GYGC G S + + E+ RVD+ + V SSL M I GS+ QK KYLP LA+
Sbjct: 80 KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQ 139
Query: 139 GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
+ + C+ LTEP+ GSD +++ T T K + +I+ G K
Sbjct: 140 LDTVACWALTEPDYGSDASSLNT------------------TATKVE---GGWILNGQKR 178
Query: 199 WISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGP 258
WI ++ AD+ +++A+
Sbjct: 179 WIGNSTFADVLVIFAR------------------------------------------NT 196
Query: 259 QNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFT 318
QI GFI++K PG + + I+ K GLR G I L +V V + L NS++
Sbjct: 197 TTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNK 256
Query: 319 LLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALV 378
+L +R +AW +G + + M Y+ +R QF PLAA QI Q KL ML +I +
Sbjct: 257 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFL 316
Query: 379 SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
++ +L ES TP S+ K KA + R++LGGNGI ++ V + +LE
Sbjct: 317 VGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLE 376
Query: 439 VVNTYEGTSDIHALILGRAITGIQAF 464
+ TYEGT DI+AL+ GR ITGI +F
Sbjct: 377 PIYTYEGTYDINALVTGREITGIASF 402
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 231 bits (591), Expect = 6e-72
Identities = 128/433 (29%), Positives = 203/433 (46%), Gaps = 65/433 (15%)
Query: 29 QEEKLLRDSVKSFCDAVLHPKIVE-DFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAGA 86
+E +++R +V+ F + + P E D + E R + E LG++G + YG AG
Sbjct: 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFP--REVIKEMAELGLMGIPIPEEYGGAGL 58
Query: 87 SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFG 146
++ + E+ +VD+ + SV +SL I K+G+++QK KYLP LA G IG F
Sbjct: 59 DFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFA 118
Query: 147 LTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206
L+EP AGSD A ++T AK D + Y++ GSK WI++ A
Sbjct: 119 LSEP-------------------GAGSDAAALKTTAKKD--GDDYVLNGSKMWITNGGEA 157
Query: 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGF 266
D I++A DP+ G RG I F
Sbjct: 158 DFYIVFAVT-DPSKGY-----RG---------------------------------ITAF 178
Query: 267 IIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARY 325
I+E+DTPG + K G+R S T + ++VRV ++ +L +K L+ R
Sbjct: 179 IVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI 238
Query: 326 GIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGR 385
GIA LG A+ A Y +R QF KP+A Q Q KLA+M T+I A + + R
Sbjct: 239 GIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAAR 298
Query: 386 LKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEG 445
LK++ + ++ K A+ + +A + GG G + +Y V R+ + ++ YEG
Sbjct: 299 LKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEG 358
Query: 446 TSDIHALILGRAI 458
TS+I L++ + +
Sbjct: 359 TSEIQRLVIAKHL 371
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 227 bits (581), Expect = 6e-71
Identities = 113/429 (26%), Positives = 162/429 (37%), Gaps = 105/429 (24%)
Query: 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHI 89
E++ LRDS + F L P E + AE G L
Sbjct: 2 EQRELRDSAREFAAEELEPYARERRETPEEPWELL-AELGLLL----------------- 43
Query: 90 SGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTE 149
+ YG+++QK +YLP LA G I F LTE
Sbjct: 44 --------------------------GAALLLAYGTEEQKERYLPPLASGEAIAAFALTE 77
Query: 150 PNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLC 209
P AGSD+A ++T A+ D + Y++ G K +IS+ ADL
Sbjct: 78 PGAGSDLAGIRTT-------------------ARKDG--DGYVLNGRKIFISNGGDADLF 116
Query: 210 ILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIE 269
I+ A+ ++ GP + I F++
Sbjct: 117 IVLARTDEE--------------------------------------GPGHRGISAFLVP 138
Query: 270 KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY-KAPFTLLNSARYGIA 328
DTPG I K G+R S TG + D+VRV +D +L + LN R +A
Sbjct: 139 ADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198
Query: 329 WGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKE 388
LGAA A Y R QF KPLA Q Q KLA+M ++ A + + L +
Sbjct: 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLD 258
Query: 389 SNLD-TPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTS 447
D ++ K A ++A A + GG G S EY V R++ + EGT+
Sbjct: 259 QGPDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTA 318
Query: 448 DIHALILGR 456
+I LI+ R
Sbjct: 319 EIQRLIIAR 327
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 170 bits (432), Expect = 4e-48
Identities = 118/459 (25%), Positives = 192/459 (41%), Gaps = 80/459 (17%)
Query: 15 FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGI 73
F + L T+E +L V+ F + V P + + + R + LG+
Sbjct: 17 FPYPSVLTEE--QTEELNMLVGPVEKFFEEVNDPAKND----QLEKIPRKTLTQLKELGL 70
Query: 74 LGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKY 132
G + YG G ++ +A EI +D G+ S+ I +G++ QK KY
Sbjct: 71 FGLQVPEEYGGLGLNNTQYARLA-EIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKY 129
Query: 133 LPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYI 192
LP+LA G I F LTEP ++GSD A+++T A Y+
Sbjct: 130 LPKLASGEWIAAFALTEP-------------------SSGSDAASIRTTAVLSEDGKHYV 170
Query: 193 ITGSKTWISSAPLADLCILWAKCE--DPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAK 250
+ GSK WI++ +AD+ ++AK E D T G +I FI+E+ G
Sbjct: 171 LNGSKIWITNGGIADIFTVFAKTEVKDAT-GSVKDKITAFIVERSFGG------------ 217
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LL 309
T+GP EK K G++ S T + ++V++ + +L +
Sbjct: 218 ---VTNGPP---------EK------------KMGIKGSNTAEVYFEDVKIPVENVLGEV 253
Query: 310 ANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANM 369
+ +K +LN+ R+G+ ++G + C A Y +R QF K + + Q KLANM
Sbjct: 254 GDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANM 313
Query: 370 LTDISLALVSCCQVGRLKESNLDTPEMI------SILKRNNCAKALDIARNARDMLGGNG 423
L + N+D +I K A + A + GG G
Sbjct: 314 ---AILQYATESMAYMTS-GNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMG 369
Query: 424 ISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQ 462
EY V R + +L + +EGT++I L + A+TG+Q
Sbjct: 370 FMREYGVERVLRDLRIFRIFEGTNEILRLFI--ALTGLQ 406
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 166 bits (423), Expect = 3e-47
Identities = 116/442 (26%), Positives = 189/442 (42%), Gaps = 79/442 (17%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
L E ++LR SV+ F + P + + R ++ + G+LG+LG T YG +G
Sbjct: 2 LDDEIEMLRQSVREFAQKEIAP-LAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSG 60
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+++ ++ EI R Y S+L + I + GS QK KYLP+L G IG
Sbjct: 61 MGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGAL 120
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
++EPNAGSDV +M+ R + + Y++ GSK WI++ P
Sbjct: 121 AMSEPNAGSDVVSMKLRA---------------------EKKGDRYVLNGSKMWITNGPD 159
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD +++AK DP HG I
Sbjct: 160 ADTLVVYAK-TDP---------------------------------SAGAHG-----ITA 180
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSAR 324
FI+EK PG+ + K G+R S T + ++ V ++ +L N + L+ R
Sbjct: 181 FIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYER 240
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
+A G +G + +A Y R QF +P+ Q+ Q KLA+M T ++ + V
Sbjct: 241 LVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVA 300
Query: 385 RLKESNLDTPEMISILKRNNCA--------KALDIARNARDMLGGNGISDEYHVIRHMNN 436
+ D M + A KA +A +A +LGGNG ++Y R + +
Sbjct: 301 K----ACDRGNM----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRD 352
Query: 437 LEVVNTYEGTSDIHALILGRAI 458
++ GTS+I +++GR +
Sbjct: 353 AKLYEIGAGTSEIRRMVIGREL 374
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 146 bits (370), Expect = 1e-39
Identities = 117/440 (26%), Positives = 179/440 (40%), Gaps = 81/440 (18%)
Query: 30 EEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV----RAIYAEFGRLGILGC-TLRGYGCA 84
E RD V+ F K V F HE R ++ + G G+LG YG
Sbjct: 2 EHDAFRDVVRRFFA-----KEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGI 56
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G +S ++ E+ R G S+ + +V I + GS +QK + LP++ G IG
Sbjct: 57 GGDLLSAAVLWEELARA-GGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGA 115
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+TEP AG SD+ ++T A+ D + Y++ GSKT+I++
Sbjct: 116 IAMTEPGAG-------------------SDLQGIRTTARKD--GDHYVLNGSKTFITNGM 154
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
LAD+ I+ A+ T G G I
Sbjct: 155 LADVVIVVAR----TGGEARG-----------------------------AGG-----IS 176
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL---LN 321
F++E+ TPG+ K G +A T + D+ RV + LL K + L L
Sbjct: 177 LFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAEN--LLGEENKGFYYLMQNLP 234
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA---LV 378
R IA G L AAEF R+Y+ R F K LA Q+ + K+A + T +++ L
Sbjct: 235 QERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLD 294
Query: 379 SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLE 438
+C R ++ LD E S+ K +A + GG G EY + R +
Sbjct: 295 NCAW--RHEQGRLDVAE-ASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDAR 351
Query: 439 VVNTYEGTSDIHALILGRAI 458
V Y GT++I ++ R +
Sbjct: 352 VQPIYGGTTEIMKELISRQM 371
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 142 bits (359), Expect = 4e-38
Identities = 109/440 (24%), Positives = 191/440 (43%), Gaps = 72/440 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAG 85
L +E++ +++ ++F + P + + + V + LG G +R G +G
Sbjct: 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKA-AELGFGGIYIRDDVGGSG 59
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
S + ++ + + S+ + + ID +G+D+Q+ ++LP+L + +
Sbjct: 60 LSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASY 118
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
C LTEP +GSD A ++TRA + + Y++ GSK +IS A
Sbjct: 119 -----------------C--LTEPGSGSDAAALRTRAVRE--GDHYVLNGSKAFISGAGD 157
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
+D+ ++ A+ T G I F++EK TPG + + E
Sbjct: 158 SDVYVVMAR----TGGEGPKGISCFVVEKGTPG-------LSFGANEK------------ 194
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL----LN 321
K G A T ++ ++ RV + L F + LN
Sbjct: 195 -----------------KMGWNAQPTRAVIFEDCRVPVENRL---GGEGQGFGIAMAGLN 234
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA-LVSC 380
R IA LGAA+ +AR+Y+ +R QF KPLA Q Q KLA+M T++ + L+
Sbjct: 235 GGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVR 294
Query: 381 CQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVV 440
L + D ++ ++ KR + D+A A + GG G +Y V +++ +L V
Sbjct: 295 RAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVH 354
Query: 441 NTYEGTSDIHALILGRAITG 460
EGT++I LI+ RA+
Sbjct: 355 QILEGTNEIMRLIIARALLT 374
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 131 bits (330), Expect = 7e-34
Identities = 108/447 (24%), Positives = 179/447 (40%), Gaps = 85/447 (19%)
Query: 24 SSLLTQEEKLLRDSVKSFCDAVL--HPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RG 80
S L + ++SV+ F + H ++ DV ++ G + G T
Sbjct: 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVN-LWKLMGDFNLHGITAPEE 81
Query: 81 YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGN 140
YG G ++ + EI R Y S+L + + + G+ QK KYLP+L G
Sbjct: 82 YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGE 141
Query: 141 LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWI 200
+G ++EPN+GSDV +M+ + + Y++ G+K W
Sbjct: 142 HVGALAMSEPNSGSDVVSMKCKA---------------------ERVDGGYVLNGNKMWC 180
Query: 201 SSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN 260
++ P+A +++AK D G G
Sbjct: 181 TNGPVAQTLVVYAK-TDVAAGS---------------------------------KG--- 203
Query: 261 PQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL- 319
I FIIEK PG+ T+ K G+R S T + +N V ++ +L K + +
Sbjct: 204 --ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEEN--VLGQEGKGVYVMM 259
Query: 320 --LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLAL 377
L+ R +A G LG + C + Y+ R QF +P+ Q Q KLA+M T + +
Sbjct: 260 SGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSR 319
Query: 378 VSCCQVGRLKESNLDTPEMISILKRNNCA--------KALDIARNARDMLGGNGISDEYH 429
V R ++ + R +CA +A +A A LGGNG +EY
Sbjct: 320 SYVYSVARDCDN--------GKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYP 371
Query: 430 VIRHMNNLEVVNTYEGTSDIHALILGR 456
R + + ++ GTS+I +++GR
Sbjct: 372 TGRLLRDAKLYEIGAGTSEIRRMLIGR 398
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 130 bits (328), Expect = 8e-34
Identities = 95/338 (28%), Positives = 147/338 (43%), Gaps = 58/338 (17%)
Query: 124 GSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAK 183
G+D+QK KYL + + L+ + +TEP AGSDVA ++T+
Sbjct: 97 GNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA-------------------- 136
Query: 184 YDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLAD 243
+ + YII G K WI++ A+ L A+ DP +P
Sbjct: 137 -EKKGDEYIINGQKMWITNGGKANWYFLLAR-SDP-----DP------------------ 171
Query: 244 LCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQ 303
KC P + GFI+E DTPG + + G R S T I+ ++VRV +
Sbjct: 172 ------KC------PASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPK 219
Query: 304 DQMLLLANS-YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIP 362
+ +L+ + +K + R +A G +G A+ A Y L+R F K +A +Q
Sbjct: 220 ENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAV 279
Query: 363 QLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGN 422
LA+M + LA ++ + +S SI K A +A +A + GGN
Sbjct: 280 SFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAVQIFGGN 339
Query: 423 GISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITG 460
G + EY V + M + ++ YEGTS I LI+ R G
Sbjct: 340 GFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 117 bits (295), Expect = 8e-32
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 28 TQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAGA 86
T+E++ LRD+V+ F + + P ++ E R ++ + G LG+LG T+ YG AG
Sbjct: 1 TEEQEALRDTVREFAEEEVAP-HAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGL 59
Query: 87 SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKG 139
++ LVA E+ R D+ SV SSLV I ++G+++QK KYLP+LA G
Sbjct: 60 DYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLASG 112
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal
domain. C-terminal domain of Acyl-CoA dehydrogenase is
an all-alpha, four helical up-and-down bundle.
Length = 150
Score = 100 bits (251), Expect = 4e-25
Identities = 41/139 (29%), Positives = 62/139 (44%)
Query: 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVS 379
LN R IA LG A A Y R F +PL Q+ + KLA+M ++ A +
Sbjct: 11 LNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIRHKLADMAAELEAARLL 70
Query: 380 CCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEV 439
+ ++ P ++ K A ++A A +LGG G S EY + R + V
Sbjct: 71 VYRAAEALDAGGPDPAEAAMAKLYASELAQEVADLAMQLLGGYGYSREYPLERLYRDARV 130
Query: 440 VNTYEGTSDIHALILGRAI 458
+ EGTS+I I+ R +
Sbjct: 131 LRIGEGTSEIQRNIIARRL 149
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 102 bits (256), Expect = 7e-24
Identities = 85/361 (23%), Positives = 142/361 (39%), Gaps = 85/361 (23%)
Query: 5 RPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV--- 61
S + D N T E LR++V F V+ ED D+
Sbjct: 19 TAAATMTSASRAFMDLYNP----TPEHAALRETVAKFSREVVDKHARED------DINMH 68
Query: 62 --RAIYAEFGRLGILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMG 118
R ++ + G LG++G T+ G AG ++ ++ E+ + D G+ Y S L +
Sbjct: 69 FNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVN 128
Query: 119 AIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANM 178
S Q+A++LP++ G +G G++EP AG+DV M
Sbjct: 129 NFYYSASPAQRARWLPKVLTGEHVGAMGMSEPG-------------------AGTDVLGM 169
Query: 179 QTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPG 238
+T AK D S+ +Y++ GSK WI++ +AD+ +++AK
Sbjct: 170 RTTAKKD-SNGNYVLNGSKIWITNGTVADVFLIYAKV----------------------- 205
Query: 239 APLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDN 298
+ +I F++E+ T G+ K G+RAS + ++
Sbjct: 206 ---------------------DGKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFED 244
Query: 299 VRVSQDQMLLLANSYKAPFTL---LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKP 355
V V + LL K + L R +A +G AE + SY +R F KP
Sbjct: 245 VVVPAEN--LLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKP 302
Query: 356 L 356
+
Sbjct: 303 I 303
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 89.4 bits (222), Expect = 3e-19
Identities = 85/417 (20%), Positives = 149/417 (35%), Gaps = 102/417 (24%)
Query: 79 RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAK 138
YG G +A R D+ Q + + +G++ Q+ K++P LA
Sbjct: 57 EEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGA--AATLLAHGTEAQREKWIPRLA- 113
Query: 139 GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
G M LTEP+AGSD+ ++T+A Y + S+ I G K
Sbjct: 114 -------------EGEWTGTM-----CLTEPDAGSDLGALRTKAVYQ-ADGSWRINGVKR 154
Query: 199 WISSAP--LAD---LCILWAKCEDPTHGPQNPQIRG---FIIEKDTPGAPLADLCILWAK 250
+IS+ +++ +L A+ E G ++G F++ K +
Sbjct: 155 FISAGEHDMSENIVHLVL-ARSEGAPPG-----VKGLSLFLVPKFLDDGERNGV------ 202
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA 310
+ I+ K GL S T + DN + L+
Sbjct: 203 -----------TVAR--------------IEEKMGLHGSPTCELVFDNAKG-----ELIG 232
Query: 311 ---NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLA 367
F ++N AR G+ G AE + A +Y +R Q + A P + +
Sbjct: 233 EEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKA--APAVTII 290
Query: 368 N------------MLTDISLALVSCCQV----GRLKESNLDTPE--------MISILKRN 403
+ + S AL K + + + + ++K
Sbjct: 291 HHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGF 350
Query: 404 NCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHAL-ILGRAIT 459
AL+ +A + GG+G + EY + ++ + + YEGT+ I AL ++GR I
Sbjct: 351 GSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKIV 407
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 85.7 bits (212), Expect = 3e-18
Identities = 92/372 (24%), Positives = 146/372 (39%), Gaps = 74/372 (19%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
L ++ + L D+ + F + P E + D R + + G +G +G L +G G
Sbjct: 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLD-RELMRDMGEMGFIGPELPEEHGGLG 59
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
++ G++ +I R D S ++ +SL + ++ PE+AK
Sbjct: 60 MGCLAAGVIHEQIARADLSM-SYVNLLASLNGQILAQHA--------RPEIAK------- 103
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
P G +A LTEP GSD A ++ RA+ D + Y++ G KT IS+A
Sbjct: 104 ----PWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLNGEKTSISAADQ 157
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD +++A+ + G I
Sbjct: 158 ADAAVVFART---------------------------------GSEAEGARG-----ISA 179
Query: 266 FIIEKDTPGYETSVIKGKF---GLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNS 322
F++ D PG + + +F G RA GSI +NVRV D ML N + ++
Sbjct: 180 FLVPMDLPG----ITRNRFDCHGQRAIGRGSIFFENVRVPADHML--GNEGQGFVQVMQG 233
Query: 323 ---ARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVS 379
+R I VL A Y+ +R F KPL+A Q LA+ T + A +
Sbjct: 234 FDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLL 293
Query: 380 CCQVGRLKESNL 391
C Q LK+ L
Sbjct: 294 CLQTLWLKDHGL 305
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar
to fadE6, fadE17, and fadE26. Putative acyl-CoA
dehydrogenases (ACAD). Mitochondrial acyl-CoA
dehydrogenases (ACAD) catalyze the alpha, beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. The mitochondrial ACD's are generally
homotetramers and have an active site glutamate at a
conserved position.
Length = 380
Score = 83.9 bits (208), Expect = 1e-17
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 30/216 (13%)
Query: 28 TQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEF----GRLGILGCTL-RGYG 82
EE R V+++ A L P++ E+ + R + G + YG
Sbjct: 1 PSEEAF-RAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYG 59
Query: 83 CAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
GAS + + E+ + + L I YG+D+QK ++LP + G I
Sbjct: 60 GRGASLMEQLIFREEMAAAGAPVP-FNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEI 118
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
C Q G +EP AGSD+A ++TRA D + +++ G K W S
Sbjct: 119 WC---------------Q----GFSEPGAGSDLAGLRTRAVRD--GDDWVVNGQKIWTSG 157
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPG 238
A AD L + DP P++ I +++ D+PG
Sbjct: 158 AHYADWAWLLVR-TDPE-APKHRGISILLVDMDSPG 191
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 82.1 bits (203), Expect = 5e-17
Identities = 92/452 (20%), Positives = 158/452 (34%), Gaps = 100/452 (22%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGR------LGILGCTLRG 80
LT+E++LL S++ ++ E++ + EF R + +LG
Sbjct: 5 LTEEQELLLASIRE----LITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVP-EE 59
Query: 81 YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPE-LAKG 139
+G A +++ LV E+ + + + + + + ++ ++GS +Q K L G
Sbjct: 60 FGGTPADYVTQMLVLEEVSKCGA---PAFLITNGQCIHSMRRFGSAEQLRKTAESTLETG 116
Query: 140 NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTW 199
+ LTEP AGSD + T Y + + G KT+
Sbjct: 117 DPAYALALTEPGAGSDNNSATT---------------------TYTRKNGKVYLNGQKTF 155
Query: 200 ISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259
I+ A ++ A+ DP + ++ PG + L
Sbjct: 156 ITGAKEYPYMLVLAR--DPQPKDPKKAFTLWWVDSSKPGIKINPL--------------- 198
Query: 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML---------LLA 310
K G T + LDNV V + ++ ++
Sbjct: 199 ----------------------HKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANML 370
N R A LG AE F A Y R+QF KP+ NQ+ Q KL M
Sbjct: 237 N--------FEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMA 288
Query: 371 TDI----SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISD 426
I ++ Q ++ ++ K A+++ +A ++GG G +D
Sbjct: 289 IKIENMRNMVYKVAWQ----ADNGQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTD 344
Query: 427 EYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
E V R ++ GT +I I GR I
Sbjct: 345 EARVSRFWRDVRCERIGGGTDEIMIYIAGRQI 376
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain.
Central domain of Acyl-CoA dehydrogenase has a
beta-barrel fold.
Length = 52
Score = 74.1 bits (183), Expect = 7e-17
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 163 CFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAK 214
F LTEP AGSD+A+++T A+ D + +++ G K WI++A LADL ++ A+
Sbjct: 1 AFALTEPGAGSDLASLETTAERDG--DGWVLNGRKWWITNAALADLALVLAR 50
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to
the AidB gene product. AidB is one of several genes
involved in the SOS adaptive response to DNA alkylation
damage, whose expression is activated by the Ada
protein. Its function has not been entirely elucidated;
however, it is similar in sequence and function to
acyl-CoA dehydrogenases. It has been proposed that aidB
directly destroys DNA alkylating agents such as
nitrosoguanidines (nitrosated amides) or their reaction
intermediates.
Length = 418
Score = 79.0 bits (195), Expect = 8e-16
Identities = 75/308 (24%), Positives = 114/308 (37%), Gaps = 57/308 (18%)
Query: 165 GLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQN 224
+TE GSD+ +T A+ Y + G K W +SAPLAD ++ A+ E G
Sbjct: 152 WMTEKQGGSDLGANETTAERSGGG-VYRLNGHK-WFASAPLADAALVLARPEGAPAGA-- 207
Query: 225 PQIRG---FIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIK 281
RG F++ + G +N GY +K
Sbjct: 208 ---RGLSLFLVPRLLED------------------GTRN-------------GYRIRRLK 233
Query: 282 GKFGLRASVTGSISLDNV---RVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFC 338
K G R+ TG + D+ + + +LN +R A LG
Sbjct: 234 DKLGTRSVATGEVEFDDAEAYLIGDEG-----KGIYYILEMLNISRLDNAVAALGIMRRA 288
Query: 339 FSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRL-KESNLDTPE-- 395
S A Y R F KPL + + + LA M D+ A + R + D P
Sbjct: 289 LSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEA 348
Query: 396 -----MISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIH 450
+ K C +A + A ++ GGNG +E+ V R +V +EGT +I
Sbjct: 349 HMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQ 408
Query: 451 ALILGRAI 458
AL + R +
Sbjct: 409 ALDVLRVL 416
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 71.0 bits (175), Expect = 5e-13
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 122 KYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQ---TRCFGLTEPNAGSDVANM 178
YG+D+QK YLP LA+G I CF LT P AGSD ++ C G + G +V M
Sbjct: 174 HYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQ---GEEVLGM 230
Query: 179 QTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTH---GPQNPQIRGFIIEKD 235
+ +T +K +I+ AP+A + L K DP ++ I +I D
Sbjct: 231 R-------------LTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD 277
Query: 236 TPG 238
TPG
Sbjct: 278 TPG 280
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 69.5 bits (170), Expect = 8e-13
Identities = 64/296 (21%), Positives = 111/296 (37%), Gaps = 43/296 (14%)
Query: 164 FGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQ 223
+TEP AGSDV +++T Y + + GSK +I+S+ ++ A+ P
Sbjct: 122 SAITEPGAGSDVGSLKT--TYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGA---SPD 176
Query: 224 NPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGK 283
P + ++ PG + L K
Sbjct: 177 KPVYTEWFVDMSKPGIKVTKL-------------------------------------EK 199
Query: 284 FGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMA 342
GLR I+ D+V + + M N + + R+ +A G A F A
Sbjct: 200 LGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDA 259
Query: 343 RSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKR 402
Y RVQF + + Q+ Q K A+M ++ + ++ T ++ K
Sbjct: 260 ARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKY 319
Query: 403 NNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
A ++ +A +LGG GI+ + + R +L V G+ ++ L LGRA+
Sbjct: 320 FCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAV 375
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 68.1 bits (167), Expect = 4e-12
Identities = 79/398 (19%), Positives = 129/398 (32%), Gaps = 111/398 (27%)
Query: 99 ERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVAN 158
D + + L AI G+D+ + +L +IGCF TE GS++
Sbjct: 92 GGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQ- 150
Query: 159 MQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII-----TGSKTWISS-APLADLCILW 212
GL +T A YDP + ++I T +K W + A +++
Sbjct: 151 ------GL------------ETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVF 192
Query: 213 AK--CEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEK 270
A+ HG + FI+ P+ D TH P
Sbjct: 193 AQLITPGKNHG-----LHAFIV-------PIRDP---------KTHQP------------ 219
Query: 271 DTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML------LLANSYKAPFTLLNS-- 322
PG I K GL G + NVR+ ++ +L +Y +PF N
Sbjct: 220 -LPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRY 278
Query: 323 ---------ARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIP-------QLKL 366
R G+ + + + ++A Y R QF + ++ Q +L
Sbjct: 279 GAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRL 338
Query: 367 ANML----------TDISLALVSCCQVGRLKESNLD-TPEM---ISILKRNN---CAKAL 409
L + + L + N + E+ + LK A+ +
Sbjct: 339 FPQLAAAYAFHFAAKSLVEMYHEI--IKELLQGNSELLAELHALSAGLKAVATWTAAQGI 396
Query: 410 DIARNARDMLGGNGISDE--YHVIRHMNNLEVVNTYEG 445
R A GG+G +R N + TYEG
Sbjct: 397 QECREA---CGGHGYLAMNRLPTLRDDN--DPFCTYEG 429
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 65.1 bits (159), Expect = 2e-11
Identities = 73/330 (22%), Positives = 120/330 (36%), Gaps = 86/330 (26%)
Query: 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVA 176
M + +YGS++QK ++L L G + F +TEP+ S SD
Sbjct: 101 MEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVAS------------------SDAT 142
Query: 177 NMQTRAKYDPSSNSYIITGSKTWISSA--PLADLCILWAKCEDPTHGPQNPQIRGFIIEK 234
N++ + D + Y+I G K W S A P + I+ + DP P++ Q ++
Sbjct: 143 NIECSIERD--GDDYVINGRKWWSSGAGDPRCKIAIVMGR-TDPDGAPRHRQQSMILVPM 199
Query: 235 DTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSI 294
DTPG + + + G+ D P G I
Sbjct: 200 DTPGVTII----------------RPLSVFGY---DDAPH-------GHA--------EI 225
Query: 295 SLDNVRVSQDQMLL-------LANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYML 347
+ DNVRV ++L +A P + + R ++GAAE + +
Sbjct: 226 TFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMR------LIGAAERALELMCQRAV 279
Query: 348 DRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDT-------PE--MIS 398
R F K LA + + +A +I A + + + +DT E MI
Sbjct: 280 SREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHM----IDTVGNKAARKEIAMIK 335
Query: 399 ILKRNNCAKALDIARNARDMLGGNGISDEY 428
+ AL I A + G G+S +
Sbjct: 336 VAAPR---MALKIIDRAIQVHGAAGVSQDT 362
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 65.7 bits (161), Expect = 2e-11
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 123 YGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTR---CFGLTEPNAGSDVANMQ 179
YG+ +QK +LP LA G I CF LT P AGSD + C G E G +V ++
Sbjct: 174 YGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFE---GEEVLGLR 230
Query: 180 TRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTH---GPQNPQIRGFIIEKDT 236
+T K +I+ AP+A + L K DP + I +I D
Sbjct: 231 -------------LTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDH 277
Query: 237 PG 238
PG
Sbjct: 278 PG 279
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 61.2 bits (148), Expect = 3e-10
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 27 LTQEEKLLRDSVKSF----CDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL--RG 80
++EE+ RD V+SF A K+VE RH T D + G + +
Sbjct: 4 FSKEEQAFRDEVRSFFKDNVPADTRQKLVEG-RHLTKDEMVTWWRILNKKGWGVSHWPKQ 62
Query: 81 YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGN 140
YG G + + + E++ + + V S+V I +G+++QK ++LP +A +
Sbjct: 63 YGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVD 120
Query: 141 LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWI 200
C G +EP +GSD+A+++T K + + +II G KTW
Sbjct: 121 DWWCQGFSEPGSGSDLASLKT---------------------KAEKKGDKWIINGQKTWT 159
Query: 201 SSAPLADLCILWAKC---EDPTHGPQ 223
+ A AD W C DPT Q
Sbjct: 160 TLAQHAD----WIFCLCRTDPTAKKQ 181
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 61.4 bits (149), Expect = 4e-10
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 54/264 (20%)
Query: 90 SGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTE 149
S G + RE+ + SMY S + +GS++QK +YL +L G G LTE
Sbjct: 130 SVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTE 189
Query: 150 PNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSN-SYIITGSKTWISSAP--LA 206
P G+D+ ++T K +PS++ SY ITG+K +IS+ L
Sbjct: 190 PQCGTDLGQVKT---------------------KAEPSADGSYKITGTKIFISAGDHDLT 228
Query: 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGF 266
+ + P P + F++ + K + + +N + G
Sbjct: 229 ENIVHIVLARLPNSLPTTKGLSLFLVPRHVV------------KPDGSLETAKNVKCIG- 275
Query: 267 IIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSARY 325
+EK K G++ S T +S +N S ++ N+ K FT +N+AR
Sbjct: 276 -LEK------------KMGIKGSSTCQLSFEN---SVGYLIGEPNAGMKQMFTFMNTARV 319
Query: 326 GIAWGVLGAAEFCFSMARSYMLDR 349
G A + AE F A Y +R
Sbjct: 320 GTALEGVCHAELAFQNALRYARER 343
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 56.4 bits (136), Expect = 2e-08
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 80/292 (27%)
Query: 111 VQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPN 170
VQ SL G++ G+ K + KY + + GCF +T E +
Sbjct: 143 VQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMT-------------------ELH 183
Query: 171 AGSDVANMQTRAKYDPSSNSYIIT-----GSKTWISSAPL-ADLCILWAKCEDPTH---G 221
GS+V +QT A +DP ++ ++I K WI +A + ++A+ + PTH G
Sbjct: 184 HGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKG 243
Query: 222 PQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIK 281
+ + FI+ P+ D+ TH + PG E
Sbjct: 244 VSDMGVHAFIV-------PIRDM---------KTH-------------QVLPGVEIRDCG 274
Query: 282 GKFGLRASVTGSISLDNVRVSQDQML-----------------LLANSYKAPFTLLNSAR 324
K GL G++ +VR+ +D +L + + A L R
Sbjct: 275 HKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGR 334
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKP------LAANQIPQLKLANML 370
G+A+G +G + ++A Y L R QF P + Q Q KL ML
Sbjct: 335 VGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPML 386
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase.
Length = 664
Score = 48.7 bits (116), Expect = 4e-06
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 64/201 (31%)
Query: 119 AIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANM 178
AI G+++Q+ K+LP K +IGC+ TE G GS+V +
Sbjct: 109 AIKGQGTEEQQKKWLPLAYKMQIIGCYAQTE--------------LG-----HGSNVQGL 149
Query: 179 QTRAKYDPSSNSYII-----TGSKTWISS-APLADLCILWAK--CEDPTHGPQNPQIRGF 230
+T A +DP ++ ++I T SK W ++ +++A+ HG I GF
Sbjct: 150 ETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHG-----IHGF 204
Query: 231 IIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASV 290
I+ Q+R PG I KFG A
Sbjct: 205 IV-----------------------------QLRSLDDHSPLPGVTVGDIGMKFGNGAYN 235
Query: 291 T---GSISLDNVRVSQDQMLL 308
T G + D+VR+ +DQML+
Sbjct: 236 TMDNGFLRFDHVRIPRDQMLM 256
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional.
Length = 646
Score = 47.9 bits (114), Expect = 9e-06
Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 53/203 (26%)
Query: 109 YSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTE 168
+V ++V+ A G+D+Q ++P L ++GC+ TE GSDV
Sbjct: 95 STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDV------------ 142
Query: 169 PNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIR 228
N++T A YD +N ++I P + W P
Sbjct: 143 -------QNLETTATYDKQTNEFVI--------HTPSVEAVKFW------------PGEL 175
Query: 229 GFIIEKDTPGAPLADLCILWAKC--EDATHG--PQNPQIRGFIIEKDTPGYETSVIKGKF 284
GF L + +++AK G P +IR K G E I K
Sbjct: 176 GF----------LCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKM 225
Query: 285 GLRASVTGSISLDNVRVSQDQML 307
G G +S D+ R+ D +L
Sbjct: 226 GYAVKDNGFLSFDHYRIPLDSLL 248
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal
domain.
Length = 134
Score = 41.5 bits (98), Expect = 1e-04
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 326 GIAWGVLGAAEFCFSMARSYMLDRVQ--FNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
G A LGAA + +RV+ PLA + Q +LA +I A + +
Sbjct: 2 GFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLERA 61
Query: 384 GRLKESNLDTPEMISILKRN----NCAKALDIARNARDML----GGNGISDEYHVIRHMN 435
++ D + ++ +R + A A ++A A D L GG+ + + + R
Sbjct: 62 ADRIWAHADRGDEVTPEERARARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWR 121
Query: 436 NLEVVNTYEGTS 447
+ + G
Sbjct: 122 DAHAGAAHAGLD 133
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase.
Length = 822
Score = 44.0 bits (104), Expect = 2e-04
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVA 176
M + +YG+ +Q+ ++L L +G + F +TEP S SD
Sbjct: 526 MEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVAS------------------SDAT 567
Query: 177 NMQTRAKYDPSSNSYIITGSKTWISSA--PLADLCILWAKCEDPTHGPQNPQIRGFIIEK 234
N++ + +SY+I G+K W S A P + I+ K D P++ Q +++
Sbjct: 568 NIECSIRRQ--GDSYVINGTKWWTSGAMDPRCRVLIVMGK-TDFN-APKHKQQSMILVDI 623
Query: 235 DTPGAPLADLCILWAKCEDATHG 257
TPG + +++ +DA HG
Sbjct: 624 QTPGVQIKRPLLVFG-FDDAPHG 645
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit.
Members of this protein family are the PimD proteins of
species such as Rhodopseudomonas palustris,
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 378
Score = 40.0 bits (93), Expect = 0.002
Identities = 84/440 (19%), Positives = 160/440 (36%), Gaps = 91/440 (20%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSD-VRAIYAEFGRLGILGCTLRGYGCAG 85
L++E++LL++SV+ + ++ E +A++ + G+LG
Sbjct: 4 LSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPF------- 56
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVM-----------GAIDKYGSDKQKAKYLP 134
S GG A +E + M ++ +LV+ G + GS QKA +LP
Sbjct: 57 -SEADGGFGAGSVETM----IVMEALGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLP 111
Query: 135 ELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIIT 194
+ G+ +T F E N+ D+ ++ T AK + + ++I
Sbjct: 112 GIIDGS-------------------KTFAFAQLEKNSRYDLGDVSTTAK--KTGDGWVID 150
Query: 195 GSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
G K + + AD I+ A+ T G + +D G
Sbjct: 151 GEKFVVLNGETADTLIVTAR----TKGAR----------RDRTG---------------- 180
Query: 255 THGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSY 313
I F++ G + GL A+ I+ V V D + N+
Sbjct: 181 --------IGVFLVPAGAKGVTIKGYPTQDGLHAA---DITFTGVVVGADAAIGDPENAL 229
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
+++ AR + +G + Y+ R QF P+ + Q+ Q + A+M +
Sbjct: 230 PLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAV 289
Query: 374 SLALVSCCQVGRLKESNLDTPEMISIL--KRNNCAKALD-IARNARDMLGGNGISDEYHV 430
A S + D E + + + K+L + + + + GG G++ E +
Sbjct: 290 EQAR-SMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKI 348
Query: 431 IRHMNNLEVVNTYEGTSDIH 450
+ L ++ G +D H
Sbjct: 349 GHYFKRLTMIEHTFGDTDFH 368
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase.
Length = 680
Score = 37.4 bits (87), Expect = 0.016
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 163 CFGLTEPNAGSDVANMQTRAKYDPSSNSYII-----TGSKTWISSA 203
CF +TE GS+V ++T YDP + ++I + K WI A
Sbjct: 188 CFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGA 233
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 35.8 bits (83), Expect = 0.048
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Query: 236 TPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSIS 295
+ GA +D + A E+ + D PG FG R + +G+++
Sbjct: 140 STGALFSDWVTVSALDEEGKL-------VFAAVPTDRPGITVVDDWDGFGQRLTASGTVT 192
Query: 296 LDNVRVSQDQMLLLANSYKAP------FTLLNSARY-GIAWGVLG-AAEFCFSMARSY 345
DNVRV D++L N+ + L+ +A GIA L A + S R +
Sbjct: 193 FDNVRVEPDEVLPRPNAPDRGTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPW 250
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB
family. Members of this protein family belong to the
greater family of acyl-CoA dehydrogenases. This family
includes the sulfate starvation induced protein SfnB of
Pseudomonas putida strain DS1, which is both encoded
nearby to and phylogenetically closely correlated with
the dimethyl sulphone monooxygenase SfnG. This family
shows considerable sequence similarity to the
Rhodococcus dibenzothiophene desulfurization enzyme
DszC, although that enzyme falls outside of the scope of
this family [Central intermediary metabolism, Sulfur
metabolism].
Length = 391
Score = 34.9 bits (81), Expect = 0.072
Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 79/277 (28%)
Query: 50 IVEDFRHETS----DVRAIYAE---FGRLGILGCTL-RGYGCAGASHISGGLVAREIERV 101
+ +F + + R +AE F + G+ G T+ R YG AG S+ + V I
Sbjct: 17 LAAEFAPGAAERDRERRLPWAELDAFSQSGLWGITVPRAYGGAGVSYATLAEVIAIISAA 76
Query: 102 DSGYRSMYSV-QSSLVM-GAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANM 159
D S+ + Q+ + GS++QK + E+ G G NA S+
Sbjct: 77 DP---SLGQIPQNHFYALEVLRLTGSEEQKRFFFGEVLAGERFG-------NAFSERG-- 124
Query: 160 QTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPT 219
TR +V + QTR + D + Y + G K + + A A + A +D
Sbjct: 125 -TR-----------NVLDFQTRLRRDG--DGYRLNGRKFYSTGALFAHWIPVLALDDD-- 168
Query: 220 HGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSV 279
P + + +D PG + D D G
Sbjct: 169 ---GRPVLA--FVPRDAPGLTVID---------------------------DWSG----- 191
Query: 280 IKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAP 316
FG R + +G++ LD+VRV + ++ + ++ P
Sbjct: 192 ----FGQRTTASGTVLLDDVRVPAEHVVPIQRAFDRP 224
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
Length = 538
Score = 29.7 bits (67), Expect = 3.7
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 23/84 (27%)
Query: 125 SDKQKAKYLPELAK-GNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAK 183
SD+ + LP K G LIG G+TE GSDV + TR E A
Sbjct: 162 SDRYDSHLLPGGQKRGLLIG-MGMTEKQGGSDVLSNTTR----AERLAD----------- 205
Query: 184 YDPSSNSYIITGSKTWISSAPLAD 207
SY + G K W S P +D
Sbjct: 206 -----GSYRLVGHK-WFFSVPQSD 223
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 28.4 bits (64), Expect = 8.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 253 DATHGPQNPQIRGFIIEKD 271
DATH P+ Q+ G +I+K+
Sbjct: 166 DATHLPEFHQVEGLVIDKN 184
>gnl|CDD|185001 PRK15041, PRK15041, methyl-accepting chemotaxis protein I;
Provisional.
Length = 554
Score = 28.4 bits (63), Expect = 9.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 49 KIVEDFRHETSD--VRAIYAE-FGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGY 105
++++ RH V+ I + +G L +LR H+ G L+ R + V +G
Sbjct: 224 RLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLR--------HMQGELM-RTVGDVRNGA 274
Query: 106 RSMYSVQSSLVMGAIDKYGSDKQKAKYLPELA 137
++YS S + G D +Q+A L E A
Sbjct: 275 NAIYSGASEIATGNNDLSSRTEQQAASLEETA 306
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,275,295
Number of extensions: 2225792
Number of successful extensions: 1692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1600
Number of HSP's successfully gapped: 62
Length of query: 464
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 364
Effective length of database: 6,502,202
Effective search space: 2366801528
Effective search space used: 2366801528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)