RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9220
(464 letters)
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 619 bits (1598), Expect = 0.0
Identities = 237/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)
Query: 14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
+F+W+D L + LT +E L+RD+ +++C L P+I+ R+E R I +E G LG+
Sbjct: 1 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 59
Query: 74 LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I YGS++Q+ KYL
Sbjct: 60 LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 119
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
P+LAKG L+GCFGLTEPN+GSD ++M+TR A Y+ S+ SY +
Sbjct: 120 PQLAKGELLGCFGLTEPNSGSDPSSMETR-------------------AHYNSSNKSYTL 160
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
G+KTWI+++P+ADL ++WA+CED
Sbjct: 161 NGTKTWITNSPMADLFVVWARCEDG----------------------------------- 185
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
IRGF++EK G I+GKF LRAS TG I +D V V ++ +L A+S
Sbjct: 186 --------CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
PF LN+ARYGIAWGVLGA+EFC AR Y LDR+QF PLA NQ+ Q KLA+MLT+I
Sbjct: 238 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 297
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
+L L +C Q+GRLK+ + PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 298 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 357
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 358 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 610 bits (1575), Expect = 0.0
Identities = 174/456 (38%), Positives = 251/456 (55%), Gaps = 65/456 (14%)
Query: 9 RSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEF 68
+ S + +D + I+++L+ EE+ +RD+V+S + P I + R + E
Sbjct: 12 QPRSQRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVEL 71
Query: 69 GRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQ 128
G LG+LG L+GYGCAG S ++ GL E+E DSG RS+ SVQ SL M AI +GSD+Q
Sbjct: 72 GELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQ 131
Query: 129 KAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188
K ++LP++A G+ IGCFGLTEP+ GSD A M+TR A
Sbjct: 132 KDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTR-------------------ATRSG-- 170
Query: 189 NSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILW 248
+ +I+TG+K WI++ +AD+ ++WA+ ++
Sbjct: 171 DDWILTGTKMWITNGSVADVAVVWARTDE------------------------------- 199
Query: 249 AKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLL 308
IRGF++ DTPG+ + IK K LRASVT + LD VR+ L
Sbjct: 200 -------------GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLP 246
Query: 309 LANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLAN 368
A S AP LN AR+GI +G LGAA C A +Y R QF++P+ Q+ Q KLA+
Sbjct: 247 GATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLAD 306
Query: 369 MLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEY 428
M + + +GR K++ PE +S+ K NN +A++IAR AR +LG +GI+ EY
Sbjct: 307 MTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEY 366
Query: 429 HVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
V+RH NNLE V TYEGTS++H LI+G+A+TG+ AF
Sbjct: 367 PVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAF 402
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 608 bits (1570), Expect = 0.0
Identities = 221/454 (48%), Positives = 283/454 (62%), Gaps = 63/454 (13%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
+ F+W+D L + L +E+++RD+ ++ L P++ E FRHET+D AI+ E G +
Sbjct: 4 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTD-AAIFREMGEI 62
Query: 72 GILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKA 130
G+LG T+ YG G ++S GL+ARE+ERVDSGYRSM SVQSSLVM I ++GSD QK
Sbjct: 63 GLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKE 122
Query: 131 KYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNS 190
KYLP+LA G IGCFGLTEPN GSD +M TR A+ P
Sbjct: 123 KYLPKLATGEWIGCFGLTEPNHGSDPGSMVTR-------------------ARKVP--GG 161
Query: 191 YIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAK 250
Y ++GSK WI+++P+AD+ ++WAK ++
Sbjct: 162 YSLSGSKMWITNSPIADVFVVWAKLDEDGRD----------------------------- 192
Query: 251 CEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLA 310
+IRGFI+EK G I GK GLRAS+TG I LD V ++ +L
Sbjct: 193 -----------EIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV 241
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANML 370
+ PFT LNSARYGIAWG LGAAE C+ +AR Y+LDR QF +PLAANQ+ Q KLA+M
Sbjct: 242 KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQ 301
Query: 371 TDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHV 430
T+I+L L ++GR+K+ E+ SI+KRN+C KALDIAR ARDMLGGNGISDE+ V
Sbjct: 302 TEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGV 361
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
RH+ NLEVVNTYEGT DIHALILGRA TGIQAF
Sbjct: 362 ARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 395
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 604 bits (1560), Expect = 0.0
Identities = 174/456 (38%), Positives = 245/456 (53%), Gaps = 66/456 (14%)
Query: 9 RSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEF 68
S + + + + LL Q+E+ + +V+ F D L P + F T + EF
Sbjct: 8 PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP-SELAKEF 66
Query: 69 GRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQ 128
G LG+LG L+GYGCAG + +S GL E+E DSG+RS SVQ SL M +I +YGS++Q
Sbjct: 67 GNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQ 126
Query: 129 KAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188
K ++LP LA G+ IGCFGLTEP+ GS+ A M+TR A+ D
Sbjct: 127 KNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTR-------------------ARRDG-- 165
Query: 189 NSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILW 248
+ +I+ G+K WI++ LAD+ +WA+ +D
Sbjct: 166 SDWILNGTKMWITNGNLADVATVWAQTDD------------------------------- 194
Query: 249 AKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLL 308
IRGF++ DTPG+ + I K LRASVT + LDNVR+ L
Sbjct: 195 -------------GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP 241
Query: 309 LANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLAN 368
LA AP + LN AR+GI +G LGAA +Y R F+KPL+ Q+ Q KLAN
Sbjct: 242 LAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLAN 301
Query: 369 MLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEY 428
M ++ ++ +GR+K++ PE IS+ K NN +A+ IAR R +LGG+GI+ EY
Sbjct: 302 MTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEY 361
Query: 429 HVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
+RH NNLE V TYEGTS++H L +G+A+TG AF
Sbjct: 362 SPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAF 397
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 592 bits (1530), Expect = 0.0
Identities = 176/447 (39%), Positives = 241/447 (53%), Gaps = 65/447 (14%)
Query: 19 DALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL 78
D + LLT EEK ++ + + F + P I + + + F LG LG TL
Sbjct: 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP-THLIPRFAELGFLGPTL 61
Query: 79 -RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELA 137
YG AG S + GL+ E+ERVDSG RS SVQSSLVM I YGS++QK ++LP+LA
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 138 KGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSK 197
+G ++GCFGLTEP+ GSD NM+TRA+ + +++++ G+K
Sbjct: 122 RGEMVGCFGLTEPDGGSDPY------------------GNMKTRARREG--DTWVLNGTK 161
Query: 198 TWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHG 257
WI++ LA L ++WAK E
Sbjct: 162 MWITNGNLAHLAVIWAKDEGG--------------------------------------- 182
Query: 258 PQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPF 317
++ GF++ DTPG++ +K K LRASVT + L+ VRV + L A KAP
Sbjct: 183 ----EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPL 238
Query: 318 TLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLAL 377
+ L AR+GIAWG +GA E + A ++ R F +PLA Q+ Q KLA ML + L
Sbjct: 239 SCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGL 298
Query: 378 VSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNL 437
+ ++ RLK+ TP +S+ KR N KAL AR ARD+LGG+GI+ EYH IRHM NL
Sbjct: 299 LLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNL 358
Query: 438 EVVNTYEGTSDIHALILGRAITGIQAF 464
E V TYEGT D+H L+LGR ITG+ AF
Sbjct: 359 ETVYTYEGTHDVHTLVLGREITGLNAF 385
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 594 bits (1534), Expect = 0.0
Identities = 138/453 (30%), Positives = 208/453 (45%), Gaps = 64/453 (14%)
Query: 12 STKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRL 71
+ D + + LLT EE+ +R V+ + + P + E + I + G +
Sbjct: 40 TFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFP-FHITPKLGAM 98
Query: 72 GILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAK 131
G+ G +++GYGC G S + + EI RVD+ + V SSL M I GS+ QK K
Sbjct: 99 GVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEK 158
Query: 132 YLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSY 191
YLP LA+ N + C+ LTEP+ GSD + + T A +
Sbjct: 159 YLPSLAQLNTVACWALTEPDNGSDASGLGTT-------------------ATKVE--GGW 197
Query: 192 IITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKC 251
I G K WI ++ ADL I++A+
Sbjct: 198 KINGQKRWIGNSTFADLLIIFARNTT---------------------------------- 223
Query: 252 EDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN 311
QI GFI++KD PG + + I K GLR G I L NV V + L N
Sbjct: 224 --------TNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVN 275
Query: 312 SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT 371
S++ +L +R +AW +G + + M Y+ +R QF PLAA Q+ Q KL ML
Sbjct: 276 SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLG 335
Query: 372 DISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431
++ + ++ +L E+ TP S+ K +KA + A R++LGGNGI ++ V
Sbjct: 336 NVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVA 395
Query: 432 RHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
+ +LE + TYEGT DI+ L+ GR +TGI +F
Sbjct: 396 KAFCDLEPIYTYEGTYDINTLVTGREVTGIASF 428
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 266 bits (682), Expect = 2e-85
Identities = 104/434 (23%), Positives = 177/434 (40%), Gaps = 63/434 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
L + ++L + + F + L P + + A + G LG+L + G AG
Sbjct: 6 LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP-AAQVKKMGGLGLLAMDVPEELGGAG 64
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+++ + EI R + + SV +SL +G I K+GS +QK ++ G+ IGCF
Sbjct: 65 LDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCF 124
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
L+EP GSD T A+ + +S+++ G+K WI++A
Sbjct: 125 ALSEP-------------------GNGSDAGAASTTARAE--GDSWVLNGTKAWITNAWE 163
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A +++A D + I
Sbjct: 164 ASAAVVFAS-TDRALQN-----KS---------------------------------ISA 184
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F++ TPG + K G+R S T ++ ++ R+ +D +L +K L+ R
Sbjct: 185 FLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGR 244
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
GIA LG A+ A +Y +R+ F PL Q+ Q KLA+M + A + +
Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304
Query: 385 RLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYE 444
LK++ + ++ K A I+ A +LGG G E RH + + YE
Sbjct: 305 MLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYE 364
Query: 445 GTSDIHALILGRAI 458
GTS+I L++ +
Sbjct: 365 GTSEIQRLVIAGHL 378
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 263 bits (676), Expect = 2e-84
Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 61/437 (13%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVE-DFRHETSDVRAIYAEFGRLGILGCTL-RGYGCA 84
L++E++ LR ++ F L PK E D +E ++R + + G LG+LG T YG +
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G ++ LV EI R Y S+L + + + G++ QK KYLP+L G IG
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
++EP NAGSDV +M+ +A+ N YI+ G+K WI++ P
Sbjct: 133 LAMSEP-------------------NAGSDVVSMKLKAEKK--GNHYILNGNKFWITNGP 171
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
AD+ I++AK D P A+ G I
Sbjct: 172 DADVLIVYAK-TDLAAVP-------------------------------ASRG-----IT 194
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSA 323
FI+EK PG+ TS K G+R S T + ++ ++ +L N + L+
Sbjct: 195 AFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLE 254
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R +A G LG + Y+ R F + + Q+ Q K+A+M T + V
Sbjct: 255 RLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNV 314
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+ + T + + + + A +A + GGNG +++ + R + + ++
Sbjct: 315 AKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIG 374
Query: 444 EGTSDIHALILGRAITG 460
GTS++ L++GRA
Sbjct: 375 AGTSEVRRLVIGRAFNA 391
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 263 bits (675), Expect = 3e-84
Identities = 99/434 (22%), Positives = 167/434 (38%), Gaps = 59/434 (13%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
EE+ + + F A + P E R + + G+ G + YG AG
Sbjct: 7 EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFP-WDLVRKLAEFGVFGALVPEAYGGAG 65
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
S + I D + +SL G I GS+ QK +LP+LA G +G +
Sbjct: 66 LSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAW 125
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
GLTEP +GSD A ++T+A+ + + G+K +I+ +
Sbjct: 126 GLTEP-------------------GSGSDAAALKTKAEKVE--GGWRLNGTKQFITQGSV 164
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A + ++ A+ DP P E+ G I
Sbjct: 165 AGVYVVMAR-TDPPPSP----------ERKHQG------------------------ISA 189
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F + G + + K GL AS T + L+++ V ++ +L + +L+ R
Sbjct: 190 FAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGR 249
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
GIA +G + A +Y R F +P+A + KLA T++ A + +
Sbjct: 250 IGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAA 309
Query: 385 RLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYE 444
LK++ + K A+ A +LGG G +Y V R+ + + E
Sbjct: 310 ELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGE 369
Query: 445 GTSDIHALILGRAI 458
GTS+I L++ R +
Sbjct: 370 GTSEILKLVIARRL 383
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 262 bits (672), Expect = 6e-84
Identities = 120/437 (27%), Positives = 178/437 (40%), Gaps = 65/437 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLR----GYG 82
LT ++ F + L P + E D + + E LGI G G G
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYD-KELIDELLSLGITGAYFEEKYGGSG 63
Query: 83 CAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
G +S L E+ + D+G S SL I ++G++ QK K+L L +G +
Sbjct: 64 DDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKL 123
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
G FGLTEP NAG+D + QT A + +Y + GSK +I++
Sbjct: 124 GAFGLTEP-------------------NAGTDASGQQTIATKN-DDGTYTLNGSKIFITN 163
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
AD+ I++A D + G HG
Sbjct: 164 GGAADIYIVFAM-TDKSKG---------------------------------NHG----- 184
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
I FI+E TPG+ + K G+ S T + +V+V + ML +K L+
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLD 244
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R G+A LG AE + A Y RVQF KPL Q KLA+M I A
Sbjct: 245 GGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVY 304
Query: 382 QVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVN 441
+ K+ +I KR A+ + A + GG G S+EY V RHM + ++
Sbjct: 305 KAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQ 364
Query: 442 TYEGTSDIHALILGRAI 458
YEGT+++ ++ G A+
Sbjct: 365 IYEGTNEVQLMVTGGAL 381
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 262 bits (672), Expect = 1e-83
Identities = 113/442 (25%), Positives = 184/442 (41%), Gaps = 67/442 (15%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
L++E ++L+ V++F + + P + G LG G + YG G
Sbjct: 5 LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 86 A--SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIG 143
++ +V EI R S R +++ I YGS+ K KY+P+L+ +G
Sbjct: 65 MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 144 CFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA 203
FG+TEP +AGSDV M + A+ + +++ GSKTWIS+A
Sbjct: 125 GFGITEP-------------------DAGSDVMAMSSTAEDK--GDHWLLNGSKTWISNA 163
Query: 204 PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQI 263
AD+ I +A D G + G +
Sbjct: 164 AQADVLIYYAY-TDKAAG---------------------------------SRG-----L 184
Query: 264 RGFIIE-KDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLN 321
F+IE ++ PG +TS ++ K G AS TG + LDNV+V ++ +L + + F LN
Sbjct: 185 SAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLN 243
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
R A G +G A+ C A Y +R QF KP+ Q+ Q +A M ++ A +
Sbjct: 244 HTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAY 303
Query: 382 QVGRLKESNLDTPEMI-SILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVV 440
+ K+ + ++ K A A +LG G S EY V R +
Sbjct: 304 KAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTY 363
Query: 441 NTYEGTSDIHALILGRAITGIQ 462
EG+++I +I+ G++
Sbjct: 364 YMVEGSANICKMIIALDQLGVR 385
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 260 bits (667), Expect = 3e-83
Identities = 105/437 (24%), Positives = 177/437 (40%), Gaps = 66/437 (15%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGYGCA 84
LT+E++ L+ + F V+ P E E +V + + +G+L + YG
Sbjct: 5 LTEEQRQLQALARRFAKEVILPVAQE--YDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGM 62
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G + +V E+ G + S L + + G+++QK ++L L + +
Sbjct: 63 GLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAA 121
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
F L+EP GSD A ++TRA + Y++ G+K WIS+
Sbjct: 122 FALSEP-------------------GNGSDAAALKTRAIRQ--GDHYVLNGTKMWISNGG 160
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
A+ +++A +P +G +
Sbjct: 161 EAEWVVVFAT-VNPELRH-----KG---------------------------------VV 181
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSA 323
++E+ TPG++ I GK G RAS T + ++V+V + L +K LN
Sbjct: 182 ALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKT 241
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R +A G +G A AR Y +R F +P+A Q Q KL +ML I A +
Sbjct: 242 RIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYA 301
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
L + L +I K A + A A + GG G E+ V + + ++++ Y
Sbjct: 302 AWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIY 361
Query: 444 EGTSDIHALILGRAITG 460
EGT++I LI+ R I
Sbjct: 362 EGTNEIQRLIIARHILA 378
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 260 bits (666), Expect = 1e-82
Identities = 119/434 (27%), Positives = 196/434 (45%), Gaps = 64/434 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
T EE +++ SVK F + P + + + +++ + G++G + YG G
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKME-KSVIQGLFQQGLMGIEVDPEYGGTG 87
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
AS +S LV E+ +VD+ +Q++L+ I K+G+++QKA YLP+L +G
Sbjct: 88 ASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLT-TEKVG-- 144
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
F L+E AGSD ++TRA + + Y++ GSK WISSA
Sbjct: 145 -----------------SFCLSEAGAGSDSFALKTRADKE--GDYYVLNGSKMWISSAEH 185
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A L ++ A DPT G +G I
Sbjct: 186 AGLFLVMANV-DPTIGY-----KG---------------------------------ITS 206
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F++++DTPG + K GLRAS T ++ +NV+V + +L + + YK LN R
Sbjct: 207 FLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGR 266
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
GIA +LG A+ CF Y+ +R+QF K L Q Q ++A++ T + A +
Sbjct: 267 IGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAA 326
Query: 385 RLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYE 444
RL E+ + S+ K A + +GG G + +Y V ++ + ++ YE
Sbjct: 327 RLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYE 386
Query: 445 GTSDIHALILGRAI 458
G S+I + + I
Sbjct: 387 GASNIQLNTIAKHI 400
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 255 bits (654), Expect = 2e-81
Identities = 119/435 (27%), Positives = 184/435 (42%), Gaps = 68/435 (15%)
Query: 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCA 84
LTQE++L+ D+V+ VL+P E R LG+LG T +G
Sbjct: 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYP-WPQLKALAELGLLGMTTPEEWGGV 60
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G ++ L E+ D + SV S L + ++GS+ QK +YL LA+G IG
Sbjct: 61 GLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGA 120
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
F LTEP AGSD +++ A+ +++ G K+WI+SA
Sbjct: 121 FCLTEP-------------------QAGSDAKSLRAEARRVK--GGFVLNGVKSWITSAG 159
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
A L ++ A+ T +G I
Sbjct: 160 HAHLYVVMAR----TE-------KG---------------------------------IS 175
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSA 323
F++EK TPG + K GL A+ T + L+ V V ++ +L L+S
Sbjct: 176 AFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSG 235
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R G+A +G A F +A++Y +R QF K L +Q K+A+M I+ A +
Sbjct: 236 RVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEA 295
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
R K+ S K A A+++ R A +LGG G +Y V R+ + +V Y
Sbjct: 296 ARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIY 355
Query: 444 EGTSDIHALILGRAI 458
EGTS+I L++ R +
Sbjct: 356 EGTSEIQRLVIAREL 370
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 259 bits (665), Expect = 2e-80
Identities = 104/453 (22%), Positives = 177/453 (39%), Gaps = 84/453 (18%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
+ E K++ + + F + P++ +HE + E G LG+LG + YG G
Sbjct: 33 FSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIG 92
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+S L+A + R + + + I +G+++QK KYLP LA G + +
Sbjct: 93 LDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAY 151
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
LTEP +GSD +T A+ + Y++ G K WI+++
Sbjct: 152 ALTEP-------------------GSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAF 192
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD+ I++AK I+ +
Sbjct: 193 ADVFIVYAK-----------------IDGE--------------------------HFSA 209
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
FI+EKD G TS + K G++ S T ++ L++ V ++ +L + + F +LN R
Sbjct: 210 FIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGR 269
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
Y + G +G+A+ ++ Y R QF +P+A + Q KLANM A S +
Sbjct: 270 YKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTV 329
Query: 385 RLKESNLDTPEMISILKRNNCAK-------------------ALDIARNARDMLGGNGIS 425
L ES + T + A + GG G
Sbjct: 330 GLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFM 389
Query: 426 DEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
EY + R + + +EGT++I+ LI+
Sbjct: 390 AEYEIERMYRDSRINRIFEGTNEINRLIVPGTF 422
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 252 bits (645), Expect = 8e-80
Identities = 102/435 (23%), Positives = 171/435 (39%), Gaps = 66/435 (15%)
Query: 26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCA 84
L +QE L + + D VL P + + ET ++ + G G+L +G
Sbjct: 15 LPSQEAAELIELTREIADKVLDPIVDRHEKDETYP-EGVFEQLGAAGLLSLPQPEEWGGG 73
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G + V EI + SV SL + +G+++QK ++LP + G IG
Sbjct: 74 GQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGA 132
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+ L+EP AGSD A ++ A Y+I GSK+WI+
Sbjct: 133 YSLSEP-------------------QAGSDAAALRCAATPTD--GGYVINGSKSWITHGG 171
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
AD L+A+ + + G +
Sbjct: 172 KADFYTLFARTGEGSRG-----------------------------------------VS 190
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSA 323
F++ D PG + K GL A T S DN R+ D+ + + F+ L+S
Sbjct: 191 CFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSG 250
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R GIA G A+ A +Y +R F + + +Q LA+M ++ A +
Sbjct: 251 RLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDA 310
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
R ++ + SI K A+ + +A + GG G + +Y V R+M +++ +
Sbjct: 311 ARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIF 370
Query: 444 EGTSDIHALILGRAI 458
EGT+ I L++ R +
Sbjct: 371 EGTNQIQRLVIARGL 385
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 248 bits (636), Expect = 2e-78
Identities = 101/441 (22%), Positives = 176/441 (39%), Gaps = 77/441 (17%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGYGCA 84
L +E LR+++++ + + P E E + A G + YG
Sbjct: 19 LPEEHIALREAIRALAEKEIAPYAAE--VDEKARFPEEALAALNSSGFSAIHVPEEYGGQ 76
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
GA ++ +V E+ RVD + +V + L + GS++ K + LP +A G +
Sbjct: 77 GADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILRGSEELKKQVLPAVASGEAMAS 135
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+ L+E AGSD A+M+TRA D + +I+ GSK WI++
Sbjct: 136 YALSER-------------------EAGSDAASMRTRAVAD--GDDWILNGSKCWITNGG 174
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
+ + A DP G G I
Sbjct: 175 KSTWYTVMAV-TDPDKGA-----NG---------------------------------IS 195
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSA 323
F++ KD G+ + K G++ S T + +N R+ D+++ + +K L+
Sbjct: 196 AFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHT 255
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R I +G A+ A +Y +R QF +P++ NQ Q LA+M I A +
Sbjct: 256 RPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSA 315
Query: 384 GRLKESNLDTPEMISILKRNNCAK------ALDIARNARDMLGGNGISDEYHVIRHMNNL 437
E IS +K A+++ +A + GG G + ++ V R M +
Sbjct: 316 AARAERGEGDLGFISAA-----SKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDA 370
Query: 438 EVVNTYEGTSDIHALILGRAI 458
++ YEGT+ I +++ RA+
Sbjct: 371 KITQIYEGTNQIQRVVMSRAL 391
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 248 bits (636), Expect = 2e-78
Identities = 108/437 (24%), Positives = 176/437 (40%), Gaps = 63/437 (14%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGYGCA 84
T+++K + + + F + P E +T + + LG++ + G
Sbjct: 16 FTEQQKEFQATARKFAREEIIPVAAE--YDKTGEYPVPLIRRAWELGLMNTHIPENCGGL 73
Query: 85 GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
G L++ E+ +G ++ +SL I G+D+QK KYL + + L+
Sbjct: 74 GLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCA 132
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+ +TEP AGSDVA ++T+A+ + YII G K WI++
Sbjct: 133 YCVTEP-------------------GAGSDVAGIKTKAEKK--GDEYIINGQKMWITNGG 171
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
A+ L A+ DP + P
Sbjct: 172 KANWYFLLAR-SDP--------------DPKAPA----------------NKA-----FT 195
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTLLNSA 323
GFI+E DTPG + + G R S T I ++V+V ++ +L+ + +K +
Sbjct: 196 GFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKE 255
Query: 324 RYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQV 383
R +A G +G A+ A Y L+R F K L +Q LA M + LA +S +
Sbjct: 256 RPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRA 315
Query: 384 GRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+S SI K A +A +A +LGGNG + EY V + M + ++ Y
Sbjct: 316 AWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIY 375
Query: 444 EGTSDIHALILGRAITG 460
GTS I LI+ R
Sbjct: 376 GGTSQIQRLIVAREHID 392
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 253 bits (648), Expect = 3e-78
Identities = 100/448 (22%), Positives = 175/448 (39%), Gaps = 79/448 (17%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
+ K + + ++F + + P + E + + G LG+L + YG
Sbjct: 28 FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLD 87
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+ +VA E+ G+ Y +S+ + +G+++QK KYLP+LA G I +
Sbjct: 88 LPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAY 146
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
LTEP +GSD +TRA YI+ G K WIS+A
Sbjct: 147 CLTEP-------------------GSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGF 187
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A L ++AK ++ +
Sbjct: 188 AHLFTVFAK-----------------VDGE--------------------------HFTA 204
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F++E+DTPG + K G++AS T + L++V+V + +L + +K F +LN R
Sbjct: 205 FLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGR 264
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
Y + G +G A+ ++ Y RVQF +P+ + Q KL M + I A + +
Sbjct: 265 YKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTV 324
Query: 385 RLKESNLDTPEMISILKRNN--------CAK------ALDIARNARDMLGGNGISDEYHV 430
L + L + + K + + GG G S EY +
Sbjct: 325 GLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPI 384
Query: 431 IRHMNNLEVVNTYEGTSDIHALILGRAI 458
R + + +EGT++I+ L++ +
Sbjct: 385 ERAYRDARINRIFEGTNEINRLLIPGML 412
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 253 bits (647), Expect = 8e-78
Identities = 101/435 (23%), Positives = 163/435 (37%), Gaps = 59/435 (13%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
TQ K L + V F + V P D + + LG G + G G
Sbjct: 50 QTQFLKELVEPVSRFFEEVNDP-AKNDALEMVEE--TTWQGLKELGAFGLQVPSELGGVG 106
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+ + + D G S+ I +G+ QK KYLP+LA G + F
Sbjct: 107 LCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAF 166
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
LTEP ++GSD A+++T A P Y + GSK WIS+ L
Sbjct: 167 CLTEP-------------------SSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGL 207
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
AD+ ++AK D G +I
Sbjct: 208 ADIFTVFAKTPV----------------------------------TDPATGAVKEKITA 233
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
F++E+ G + K G++AS T + D VRV + +L + + +K +LN+ R
Sbjct: 234 FVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGR 293
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVG 384
+G+A + G + A + +R QF + + + Q KLA M+ + V
Sbjct: 294 FGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVS 353
Query: 385 RLKESNLDTPEM-ISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTY 443
+ ++ +I K A + ++GG G E V R + +L + +
Sbjct: 354 ANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIF 413
Query: 444 EGTSDIHALILGRAI 458
EGT+DI L +
Sbjct: 414 EGTNDILRLFVALQG 428
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 245 bits (629), Expect = 2e-77
Identities = 95/438 (21%), Positives = 172/438 (39%), Gaps = 72/438 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAG 85
L +E+K + F + P + E + E + + +LG G ++ G +G
Sbjct: 19 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFP-VDVMRKAAQLGFGGVYIQTDVGGSG 77
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
S + ++ + + + S+ + + ID +G+++Q+ K+ P L +
Sbjct: 78 LSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASY 136
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
LTEP +GSD A++ T AK + YI+ GSK +IS A
Sbjct: 137 CLTEP-------------------GSGSDAASLLTSAKKQ--GDHYILNGSKAFISGAGE 175
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
+D+ ++ + P +G I
Sbjct: 176 SDIYVVMCRTGGPGP-------KG---------------------------------ISC 195
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYKAPFTLLNSAR 324
++EK TPG + K G + T ++ ++ V + + LN R
Sbjct: 196 IVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGR 255
Query: 325 YGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA--LV--SC 380
IA LGAA + R ++ R QF +PLA+NQ Q LA+M T + A +V +
Sbjct: 256 INIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAA 315
Query: 381 CQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVV 440
L+E D + S+ K + I A M GG G +Y V +++ + V
Sbjct: 316 V---ALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVH 372
Query: 441 NTYEGTSDIHALILGRAI 458
EG++++ +++ R++
Sbjct: 373 QILEGSNEVMRILISRSL 390
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 242 bits (619), Expect = 2e-76
Identities = 83/433 (19%), Positives = 150/433 (34%), Gaps = 81/433 (18%)
Query: 40 SFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAGASHISGGLVAREI 98
+ ++ + E R + G G+L + +G G G +
Sbjct: 6 ALLTDLVGDRAAEWDTSGELP-RDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHV 64
Query: 99 ERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVAN 158
+ S RS+ + + + + G Q+A +L EL G L
Sbjct: 65 GSLCSSLRSVMTS-QGMAAWTVQRLGDAGQRATFLKELTSGKL-----------A----- 107
Query: 159 MQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDP 218
G +E AGSD++ M+TR + D ++ ++ G K W ++A AD +++ ++
Sbjct: 108 ----AVGFSERQAGSDLSAMRTRVRLD--GDTAVVDGHKVWTTAAAYADHLVVFGL-QED 160
Query: 219 THGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETS 278
G ++ DTPG
Sbjct: 161 GSGAV------------------------------------------VVVPADTPGVRVE 178
Query: 279 VIKGKFGLRASVTGSISLDNVRVSQDQML-LLANSYK-APFTLLNSARYGIAWGVLGAAE 336
+ G RA+ + LD VRV +L S L R +AWG +G
Sbjct: 179 RVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILR 238
Query: 337 FCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEM 396
C + A ++ R QF +PL +Q+ +A++ T +A C +
Sbjct: 239 ACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVP 298
Query: 397 ISILKRNNCAK------ALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIH 450
+I AK A A A +L G + + V R + +++ EG+S++
Sbjct: 299 ATI-----LAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMC 353
Query: 451 ALILGRAITGIQA 463
++L + + A
Sbjct: 354 RVMLAQHALALPA 366
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 240 bits (616), Expect = 1e-75
Identities = 107/446 (23%), Positives = 178/446 (39%), Gaps = 80/446 (17%)
Query: 24 SSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGY 81
+ L +E + R + + F + +P + + + R+ +A+ G G L + Y
Sbjct: 7 ARYLREEHHMFRAAFRKFLEKEAYPHYND--WEKRGIIPRSFWAKMGENGFLCPWVDEKY 64
Query: 82 GCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNL 141
G A ++ E+E+V S + + + +V I YG+++QK K+LP+ G L
Sbjct: 65 GGLNADFAYSVVINEELEKVGSSLVGI-GLHNDIVTPYIASYGTEEQKQKWLPKCVTGEL 123
Query: 142 IGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWIS 201
I +TEP AGSD+AN+ T A D + YI+ G KT+I+
Sbjct: 124 ITAIAMTEP-------------------GAGSDLANISTTAVKD--GDYYIVNGQKTFIT 162
Query: 202 SAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNP 261
+ ADL ++ K DP P + G
Sbjct: 163 NGIHADLIVVACKT-DPQAKPPH-------------------------------RG---- 186
Query: 262 QIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML---------LLANS 312
I ++E+DTPG+ K GL A T + + +V +L L+
Sbjct: 187 -ISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEK- 244
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
L R +A AAE FS+ + Y+ R F K ++ Q Q +LA M T+
Sbjct: 245 -------LQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATE 297
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
I+L +V + +S+ K A +A A + GG G +EY + R
Sbjct: 298 IALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIAR 357
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAI 458
++ V Y GT+++ I+ R +
Sbjct: 358 RYRDIPVSAIYAGTNEMMKTIIARQL 383
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 238 bits (610), Expect = 2e-74
Identities = 95/451 (21%), Positives = 163/451 (36%), Gaps = 87/451 (19%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGYGCA 84
T E + LR +V++F + + P E ++ R ++ + LG+LG G +
Sbjct: 26 TTAEREALRKTVRAFAEREVLPHAHE--WERAGEIPRELHRKAAELGLLGAGFPEDAGGS 83
Query: 85 GASHISGGLVAREIERVD-SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIG 143
G ++ E+ G + + + G + Y+ +G IG
Sbjct: 84 GGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIG 143
Query: 144 CFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSA 203
+TEP GSDV +++TRA D + Y+I G+KT+I+S
Sbjct: 144 ALAITEP-------------------GGGSDVGHLRTRADLD--GDHYVINGAKTYITSG 182
Query: 204 PLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQI 263
AD + A+ T PGA G +
Sbjct: 183 VRADYVVTAAR----T---------------GGPGA----------------GG-----V 202
Query: 264 RGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML---------LLANSYK 314
+++K TPG+E + K G R+S T +S +VRV ++ + A
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAA--- 259
Query: 315 APFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDIS 374
+ R G+A A+ C + + +R F +PL + Q Q LA M I
Sbjct: 260 -----FVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRID 314
Query: 375 LA--LVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+A V R + + K +A A + GG G E V R
Sbjct: 315 VARVYTRHV-VERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVER 373
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAITGIQA 463
++ ++ GT++I + + + G Q+
Sbjct: 374 QYRDMRILGIGGGTTEILTSLAAKTL-GFQS 403
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 238 bits (609), Expect = 3e-74
Identities = 101/447 (22%), Positives = 168/447 (37%), Gaps = 83/447 (18%)
Query: 24 SSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV-RAIYAEFGRLGILGCTL-RGY 81
+ T E + L +SF + + PK+ E ++ R ++ +G+LG
Sbjct: 26 EAWTTPERRALSQMARSFVEREIAPKLAE--WEHVGEIPRDLHLNAAEVGLLGIGFPEEV 83
Query: 82 GCAGASHISGGLVAREIERVD-SGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGN 140
G +G + I LV I S + + I GSD +Y+ G
Sbjct: 84 GGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGK 143
Query: 141 LIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWI 200
+IG G+TEP AGSDVAN++TRA + ++Y++ G+KT+I
Sbjct: 144 MIGSLGVTEP-------------------GAGSDVANLRTRAVRE--GDTYVVNGAKTFI 182
Query: 201 SSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQN 260
+S AD + T G G
Sbjct: 183 TSGVRADFVTTAVR---------------------TGG--------------PGYGG--- 204
Query: 261 PQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML---------LLAN 311
+ +I+K++PG+E S K G R S T +S +VRV D ++ ++
Sbjct: 205 --VSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQ 262
Query: 312 SYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLT 371
+ R GIA A +A+S+ +R F +PL QI + KLA M
Sbjct: 263 --------FQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMAR 314
Query: 372 DISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431
+ +A V + + D +S+ K + A + GG G E +
Sbjct: 315 QVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIE 374
Query: 432 RHMNNLEVVNTYEGTSDIHALILGRAI 458
RH + ++ GT++I ++ + I
Sbjct: 375 RHYRDCRILGIGGGTNEIMNEVIAKRI 401
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 235 bits (601), Expect = 1e-72
Identities = 66/459 (14%), Positives = 135/459 (29%), Gaps = 74/459 (16%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVE-----DFRHETSDVRAIYAEFGRLGILGCTL-RG 80
L+ + R ++F + VL E D R Y E R G++ +
Sbjct: 6 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65
Query: 81 YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKG- 139
G S + ++ E+ V+ ++L + + S + K+L G
Sbjct: 66 LGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGE 124
Query: 140 -NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKT 198
+ +EPN ++ +QT A+ N ++I+G K
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGG--------------PGLQTTARKV--GNEWVISGEKL 168
Query: 199 WISSA-----PLADLCILWAKCEDPTHGPQNPQIRG------FIIEKDTPGAPLADLCIL 247
W S++ ADL + + D PQ+P + ++ ++T
Sbjct: 169 WPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK----- 223
Query: 248 WAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
Y+ G + V + +L
Sbjct: 224 -------------------------DAYQILGEPELAGHITTSGPHTRFTEFHVPHENLL 258
Query: 308 LLANS--YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQF-NKPLAANQIPQL 364
T + + +G A F A + + +K + +Q
Sbjct: 259 CTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVAD 318
Query: 365 KLANMLTDISLA--LV--SCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLG 420
KL + + + LV + + EM K A++ +A +G
Sbjct: 319 KLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVG 378
Query: 421 GNGISDEYHVIRHMNNLEVVNTYEGTS-DIHALILGRAI 458
+ + R +N + ++G + + + R +
Sbjct: 379 MKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 214 bits (548), Expect = 6e-65
Identities = 64/456 (14%), Positives = 130/456 (28%), Gaps = 72/456 (15%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDV------RAIYAEFGRLGILGCTL-R 79
L+ +K + +S +L P +H + + YA GIL +
Sbjct: 7 LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISP 66
Query: 80 GYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKG 139
+G G + I ++ E V+ + L + I + Q A++L G
Sbjct: 67 AHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPI-NLAAGPQHAEFLAPFLSG 124
Query: 140 --NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSK 197
+ + +EP ++ QT A+ + + ++I G K
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGA--------------PGFQTTARLE--GDEWVINGEK 168
Query: 198 TWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHG 257
W ++ D G LA + A
Sbjct: 169 MWATNCAGWD----------------------------FKGCDLACVVCRDATTPLEEGQ 200
Query: 258 PQNPQIRGFII------EKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN 311
++ ++ +E G + + NVRV +L A
Sbjct: 201 DPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAG 260
Query: 312 S-YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK-PLAANQIPQLKLANM 369
K F + + + +G F A + + + PL Q L+ +
Sbjct: 261 QGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGV 320
Query: 370 LTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAK------ALDIARNARDMLGGNG 423
A + E+ + + AK A+ + + +G +
Sbjct: 321 KIQTEAARALTWKAAHAMENGPGDYDARR--ELALAAKVFCSEAAVKACTDVINAVGISA 378
Query: 424 ISDEYHVIRHMNNLEVVNTYEGTSD-IHALILGRAI 458
+ +N V+ ++G + I L + +
Sbjct: 379 YDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLM 414
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 195 bits (499), Expect = 3e-58
Identities = 62/458 (13%), Positives = 130/458 (28%), Gaps = 95/458 (20%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
LT + + D + + + + R T + +F +LG++G T+ G G
Sbjct: 9 LTPAGRTVVDLLAGVIPRIS-AEAADRDRTGTFP-VEAFEQFAKLGLMGATVPAELGGLG 66
Query: 86 ASHI-SGGLVAREIERVDSGYRSMYSVQSSLVMGA--IDKYGSDK---QKAKYLPELAKG 139
+ + + D+ + VQ S + ++G+ + L +A+G
Sbjct: 67 LTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEG 126
Query: 140 NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTW 199
C A D + T D + ++++G K
Sbjct: 127 EAAVCG-------------------------ALKDAPGVVTELHSDG-AGGWLLSGRKVL 160
Query: 200 ISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259
+S AP+A + A+ G
Sbjct: 161 VSMAPIATHFFVHAQ-RRDDDGS-----VF------------------------------ 184
Query: 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS---YKAP 316
+ ++ +D PG G+RAS T + D V D++L A
Sbjct: 185 ---LAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAV 241
Query: 317 FTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA 376
+ + G A+ +A + R P A + +A + T +
Sbjct: 242 LAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGE--PRAGA---RALVAGLDTRLYAL 296
Query: 377 LVSCCQVGRLKESNLDTPEMISILKRNNCAK------------ALDIARNARDMLGGNGI 424
+ ++ + A + + ++GG
Sbjct: 297 RTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAY 356
Query: 425 SDEYHVIRHMNNLEVVNTYEGTSDIHAL-ILGRAITGI 461
+ + + R ++ + S + A+ L G+
Sbjct: 357 TAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALGL 394
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 196 bits (501), Expect = 4e-58
Identities = 61/454 (13%), Positives = 144/454 (31%), Gaps = 85/454 (18%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTL-RGYGCAG 85
+T ++L D + + + E R T + + G++G T+ G G
Sbjct: 20 VTPAGRVLLDRLAAHLPRIR-STAAEHDRDGTFP-TDTFDALRKDGLMGATVPAELGGLG 77
Query: 86 ASHISGGLVA-REIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGC 144
+ VA + R D+ +Q S + ++ ++A+ L E ++
Sbjct: 78 VDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAG 137
Query: 145 FGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAP 204
+ G+ + + + T + ++++G KT +S AP
Sbjct: 138 DAVVCS--------------GIKDHHTA-----VTTLRPDG--AGGWLLSGRKTLVSMAP 176
Query: 205 LADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR 264
+ ++ A+ D T GP +
Sbjct: 177 VGTHFVINART-DGTDGP-----PR---------------------------------LA 197
Query: 265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS-YKAPFTL--LN 321
++ +DTPG+ G+RAS T I D+ + D +L+ + L
Sbjct: 198 SPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQT 257
Query: 322 SARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCC 381
+ + +G A+ + A + + R + + +A + + + +
Sbjct: 258 VSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQA-----AALTLVAEIDSRLYALRATAG 312
Query: 382 QVGRLKESNLDTPEMISILKRNNCAK------------ALDIARNARDMLGGNGISDEYH 429
++ + + A +I + ++GG + +
Sbjct: 313 SALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHP 372
Query: 430 VIRHMNNLEVVNTYEGTSDIHAL-ILGRAITGIQ 462
+ R + +++ + + + A+ L GI+
Sbjct: 373 LARLLRDVQAGRFMQPYAYVDAVDFLSAQALGIE 406
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 163 bits (415), Expect = 2e-44
Identities = 65/395 (16%), Positives = 115/395 (29%), Gaps = 96/395 (24%)
Query: 107 SMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGL 166
+ + + + AI G+++Q+ K+L K +IGC+ T
Sbjct: 97 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQT------------------ 138
Query: 167 TEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWIS------SAPLADLCILWAK--CEDP 218
E GS+V ++T A DP ++ ++I S ++ +++A+
Sbjct: 139 -ELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGK 197
Query: 219 THGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETS 278
+G GFI+ Q+R P
Sbjct: 198 DYGIH-----GFIV-----------------------------QLRSLEDHSPLPNITVG 223
Query: 279 VIKGKFG---LRASVTGSISLDNVRVSQDQML-------------LLANSYKAPFTLLNS 322
I K G + G + D+VR+ +DQML + + +
Sbjct: 224 DIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVY 283
Query: 323 ARYGIAWGVLGAAEFCFSMARSYMLDRVQF-------NKPLAANQIPQLKLANMLTDISL 375
R I A +A Y R QF + + Q +L +L
Sbjct: 284 VRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYA 343
Query: 376 ALVSCCQVGRLKESNLDTPE------------MISILKRNNCAKALDIARNARDMLGGNG 423
+ L + + LK D R + GG+G
Sbjct: 344 FRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403
Query: 424 ISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
+ TYEG + + L + R +
Sbjct: 404 YLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFL 438
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 161 bits (408), Expect = 2e-43
Identities = 59/401 (14%), Positives = 111/401 (27%), Gaps = 92/401 (22%)
Query: 97 EIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDV 156
V G+ + + + + + +Q+ ++ + G + T
Sbjct: 88 FKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQT-------- 139
Query: 157 ANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITG-----SKTWISSAPL-ADLCI 210
E G+ + ++T A YDP + +I+ K W ++ I
Sbjct: 140 -----------EMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAI 188
Query: 211 LWAK--CEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFII 268
+ A+ + +G F++ IR
Sbjct: 189 VLAQLITQGECYGLH-----AFVV-----------------------------PIREIGT 214
Query: 269 EKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML------------LLANSYKAP 316
K PG I KFG G + +DN R+ ++ ML + S K
Sbjct: 215 HKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLT 274
Query: 317 FTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFN-------KPLAANQIPQLKLANM 369
+ + R + + ++A Y R Q + Q Q KL +
Sbjct: 275 YGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPL 334
Query: 370 LTDISLALVSCCQVGRLKESNLDTPE------------MISILKRNNCAKALDIARNARD 417
L + ++ + + LK A R
Sbjct: 335 LATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM 394
Query: 418 MLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
GG+G S + T+EG + + L R +
Sbjct: 395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFL 435
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 103 bits (258), Expect = 4e-24
Identities = 69/370 (18%), Positives = 122/370 (32%), Gaps = 105/370 (28%)
Query: 117 MGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVA 176
M + YGS++QK ++L L +GN+ CF +TEP+ A SD
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDV------------------ASSDAT 165
Query: 177 NMQTRAKYDPSSNSYIITGSKTWISSA--PLADLCILWAKCEDPTHGPQNPQIRGFIIEK 234
N++ + D +SY+I G K W S A P + I+ + ++ ++ Q ++
Sbjct: 166 NIECSIQRD--EDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNT-SLSRHKQHSMILVPM 222
Query: 235 DTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTP--GYETSVIKGKFGLRASVTG 292
+TP G I + GY + G
Sbjct: 223 NTP---------------------------GVKIIRPLSVFGYTDNFHGGH--------F 247
Query: 293 SISLDNVRVSQDQMLL-------LANSYKAPFTLLNSARYGIA-------WGVLGAAEFC 338
I + VRV ++L ++ R G +G AE
Sbjct: 248 EIHFNQVRVPATNLILGEGRGFEISQ-----------GRLGPGRIHHCMRT--VGLAERA 294
Query: 339 FSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRL----------KE 388
+ R+ F K L A+++ +A I + RL
Sbjct: 295 LQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAI--------EKIRLLTLKAAHSMDTL 346
Query: 389 SNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSD 448
+ + I+++K I A + GG G+S +Y + V+ +G +
Sbjct: 347 GSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDE 406
Query: 449 IHALILGRAI 458
+H +
Sbjct: 407 VHLSAIATME 416
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 99.4 bits (248), Expect = 1e-22
Identities = 62/349 (17%), Positives = 112/349 (32%), Gaps = 70/349 (20%)
Query: 119 AIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANM 178
+ + +Y L G + M G+TE GSDV +
Sbjct: 152 PFQDWTTPLLSDRYDSHLLPGGQKRGLLIG----------M-----GMTEKQGGSDVMSN 196
Query: 179 QTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPG 238
TRA+ SY + G K W S P +D ++ A+ + F + + P
Sbjct: 197 TTRAERLED-GSYRLVGHK-WFFSVPQSDAHLVLAQTAG--------GLSCFFVPRFLPD 246
Query: 239 APLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDN 298
G +N +E+ +K K G R++ + + +
Sbjct: 247 ------------------GQRN----AIRLER---------LKDKLGNRSNASCEVEFQD 275
Query: 299 ---VRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKP 355
+ + + R+ A G FS+A + R F P
Sbjct: 276 AIGWLLGL-----EGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNP 330
Query: 356 LAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPE------MISILKRNNCAKAL 409
L + + L+ M + ++ R + D E K C + +
Sbjct: 331 LIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGM 390
Query: 410 DIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
A ++LGG G +E + R + V + +EG+ +I L + R +
Sbjct: 391 PFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVL 439
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 89.4 bits (222), Expect = 1e-19
Identities = 48/428 (11%), Positives = 106/428 (24%), Gaps = 106/428 (24%)
Query: 62 RAIYAEFGRLGILGCTL-RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAI 120
+G+ + YG S + +G ++
Sbjct: 66 DENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAG--------TAWAFSL- 116
Query: 121 DKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQT 180
+ + + Q + S
Sbjct: 117 --LCTHSHQIAMFSKQL----------------------QDEIWLKDPDATASSSIAPFG 152
Query: 181 RAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAP 240
+ + I+ G W S A+ I+ D +I +
Sbjct: 153 KVEEVE--GGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKI---YSFGVIPRS----- 202
Query: 241 LADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVR 300
+ I + + +++S + + L NV
Sbjct: 203 ------------------------DYEIVDN---WYA------QAIKSSGSKMLKLVNVF 229
Query: 301 VSQDQMLLLANS----------------YKAPFTLLNSARYGIAWGVLGAAEFCFSMARS 344
+ + ++ + + P+ ++ G + LG AE +
Sbjct: 230 IPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFAS--GFSAVSLGIAERMIEAFKE 287
Query: 345 YMLDRVQ--FNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMIS---- 398
+RV+ + +++A ++ A + + + +
Sbjct: 288 KQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETL 347
Query: 399 ILKRNNCAKALDIARNARDML----GGNGISDEYHVIRHMNNLEVVNTYEGTS-DIHALI 453
R N A A+ + A D L G D + R + + + T D+ A I
Sbjct: 348 AFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQI 407
Query: 454 LGRAITGI 461
LGR + G+
Sbjct: 408 LGRELMGM 415
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 87.6 bits (216), Expect = 1e-18
Identities = 42/376 (11%), Positives = 99/376 (26%), Gaps = 61/376 (16%)
Query: 79 RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQK--AKYLPEL 136
R Y I+ G R + + + + +I G + + +L L
Sbjct: 83 RKYHETILREIAAGSYGRLPDAHNYTFTTYADDPEVWEKQSIGAEGRNLTQNIHNFLKLL 142
Query: 137 AKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196
+ +L +P + + + R + + + I+ G
Sbjct: 143 REKDLNCPLNFVDPQTD--------------RSSDAAQARSPNLRIV-EKTDDGIIVNGV 187
Query: 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATH 256
K + D + G Q+ I +TPG + C
Sbjct: 188 KAVGTGIAFGDYMHIGCL---YRPGIPGEQVIFAAIPTNTPG--VTVFC----------- 231
Query: 257 GPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAP 316
+ + G E + DNV + +Q+ + N A
Sbjct: 232 RESTVKNDPAEHPLASQGDEL-------------DSTTVFDNVFIPWEQVFHIGNPEHAK 278
Query: 317 F---TLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
+ + Y I + AE +A + + ++A ++
Sbjct: 279 LYPQRIFDWVHYHILIRQVLRAELIVGLAILIT-----EHIGTSKLPTVSARVAKLVAFH 333
Query: 374 SLA---LVSCCQVGRLKESNLDTPE--MISILKRNNCAKALDIARNARDMLGGNGISDEY 428
L++ + G + P + + + + + D+ G + +
Sbjct: 334 LAMQAHLIASEETGFHTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLM--I 391
Query: 429 HVIRHMNNLEVVNTYE 444
++ + +
Sbjct: 392 PSEGQWDDSQSGQWFV 407
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 80.6 bits (198), Expect = 2e-16
Identities = 42/343 (12%), Positives = 91/343 (26%), Gaps = 51/343 (14%)
Query: 96 REIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQK--------AKYLPELAKGNLIGCFGL 147
R + + + + Y D++ +YL + + +LI +
Sbjct: 90 RLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAM 149
Query: 148 TEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLAD 207
T+P +A + ++ R + + ++ G+K + + +
Sbjct: 150 TDPKGDRGLAPSAQK------------DPDLFLRIV-EKREDGIVVRGAKAHQTGSINSH 196
Query: 208 LCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFI 267
I+ F D G + +
Sbjct: 197 EHIIMPTI--AMTEADKDYAVSFACPSDADGLFM------------------IYGRQSCD 236
Query: 268 IEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGI 327
K G + + +FG + DNV + D++ L A + A Y
Sbjct: 237 TRKMEEGADIDLGNKQFG---GQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHR 293
Query: 328 AWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLA---LVSCCQVG 384
+ + KL M ++C G
Sbjct: 294 QSYGGCKVGVGDVVI--GAAALAADYNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEG 351
Query: 385 RLKESNLDTPE--MISILKRNNCAKALDIARNARDMLGGNGIS 425
+ + + ++ K+N +I R A D+ GG ++
Sbjct: 352 YPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT 394
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 80.2 bits (197), Expect = 2e-16
Identities = 35/323 (10%), Positives = 72/323 (22%), Gaps = 58/323 (17%)
Query: 115 LVMGAIDKYGSD--KQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAG 172
+ A Y + + Y L +L LT P
Sbjct: 110 MAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSG-----------Q 158
Query: 173 SDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFII 232
D K ++ G++ + ++ I + F +
Sbjct: 159 PDPYIPVGVVKQT--EKGIVVRGARMTATFPLADEVLIFPSILLQAG---SEKYALAFAL 213
Query: 233 EKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTG 292
TPG + G D P + +
Sbjct: 214 PTSTPGLHF----------------VCREALVGGDSPFDHPLS------SRVE---EMDC 248
Query: 293 SISLDNVRVSQDQMLL-----LANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYML 347
+ D+V V +++ + L N+ LN + + E +A
Sbjct: 249 LVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAA---- 304
Query: 348 DRVQFNKPLAANQIPQLKLANMLTDISLA---LVSCCQVGRLKESNLDTP--EMISILKR 402
+ Q K+A ++ + + + L P + +
Sbjct: 305 -LMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGARN 363
Query: 403 NNCAKALDIARNARDMLGGNGIS 425
I + I+
Sbjct: 364 LYPRLYPRIREILEQIGASGLIT 386
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/329 (12%), Positives = 92/329 (27%), Gaps = 72/329 (21%)
Query: 160 QTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPT 219
Q +G S + Y + G+ W S A +L
Sbjct: 104 QEDVWGNDTDVRISSSYAPMGAGQVVD--GGYTVNGAWAWSSGCDHASWAVLGGPVIKD- 160
Query: 220 HGPQNPQIRGFIIEKDTPGAPLADLCIL--WAKCEDATHGPQNPQIRGFIIEKDTPGYET 277
+ F+I P D I W +
Sbjct: 161 --GRPVDFVSFLI-------PREDYRIDDVW----------------------NV----- 184
Query: 278 SVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPF---TLLNSARYGIAWG---- 330
GLR + + ++ +++V V ++L + Y + WG
Sbjct: 185 ------VGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHP 238
Query: 331 ------VLGAAEFCFSMARSYMLDRVQFN---KPLAANQIPQLKLANMLTDI----SLAL 377
++G A + + RV+ + + ++++A +DI
Sbjct: 239 TTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLS 298
Query: 378 VSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDML----GGNGISDEYHVIRH 433
+ L + + P + + R + +A A ++ D L G +++ + R
Sbjct: 299 GNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRF 358
Query: 434 MNNLEVVNTYEGTS-DIHALILGRAITGI 461
+ + + ++ G G+
Sbjct: 359 WRDAHAGRVHAANDPERAYVMYGTGEFGL 387
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 57.5 bits (139), Expect = 4e-09
Identities = 46/307 (14%), Positives = 83/307 (27%), Gaps = 84/307 (27%)
Query: 191 YIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCIL--- 247
Y++ G ++ S L A D G P I+ P D I+
Sbjct: 146 YVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVIL-------PRTDYQIVEDT 198
Query: 248 WAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
W D GLR + + + +D V + L
Sbjct: 199 W----------------------DV-----------IGLRGTGSKDLIVDGAFVPGYRTL 225
Query: 308 LLANS---------------YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQF 352
A + P++ + GI V+G E + + DRV
Sbjct: 226 NAAKVMDGRAQKEAGRPEPLFNMPYSCMFPL--GITAAVIGITEGALACHIAVQKDRVAI 283
Query: 353 N-KPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMIS----ILKRNNCAK 407
+ + + + +I+ + VS + +D + I+ + R
Sbjct: 284 TGQKIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVDAGKEITFEERAIGRRTQIA 343
Query: 408 ALDIARNARDML----GGNGISDEYHVIRHMNNLEVVNTYEGTSDIHAL--------ILG 455
A A A D + GG + + + R + HA+
Sbjct: 344 AAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLA-------HAVHVPGPTNHASA 396
Query: 456 RAITGIQ 462
G +
Sbjct: 397 LTQLGGE 403
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 7e-06
Identities = 90/535 (16%), Positives = 158/535 (29%), Gaps = 175/535 (32%)
Query: 2 SLFRPLLRSYSTKFNWEDAL---NI----SSLLTQEEKLLRDS---VKSFCDAVLHPKIV 51
F +L T+F L +I + LL + + L + +K++ A + K
Sbjct: 78 GQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 52 EDFRHETSDVRA-------IYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSG 104
D + ++ RA + A FG G G + E+
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFG----------GQG-----NTDDYF--EEL------ 173
Query: 105 YRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNL--IGCFG--------LTEPNAGS 154
R +Y LV I A+ L EL + L F L P+
Sbjct: 174 -RDLYQTYHVLVGDLIK------FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 155 DVANM-------------QTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIIT-----GS 196
D + Q + +T G +++ K + ++T +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 197 KTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATH 256
+W S I F I G +C +A
Sbjct: 287 DSWESFFVSVRKAITVL----------------FFI-----G----------VRCYEAY- 314
Query: 257 GPQ---NPQIRGFIIEKD--TPGYETSVIKGKFGL-RASVTGSISLDNVRVSQDQMLLLA 310
P P I +E + P S+ L + V ++ N + + + ++
Sbjct: 315 -PNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 311 NSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK---PLAANQ--IP--- 362
L+N A+ + V G + S+ Y L+ K P +Q IP
Sbjct: 370 --------LVNGAKNLV---VSGPPQ---SL---YGLNL-TLRKAKAPSGLDQSRIPFSE 411
Query: 363 -QLKLANMLTDIS-------LALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIA-- 412
+LK +N ++ L S L ++N+ AK + I
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-----------AKDIQIPVY 460
Query: 413 --RNARDM--LGGNGISDEYHVIRHMN-NLEVVNTYEGTSDIHALILGR-AITGI 461
+ D+ L G+ I + E ++ T H L G +G+
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---HILDFGPGGASGL 512
Score = 39.3 bits (91), Expect = 0.003
Identities = 66/383 (17%), Positives = 103/383 (26%), Gaps = 151/383 (39%)
Query: 2 SLFRPLLRS-YSTKFNWEDALNISSLLTQEEK------LLRDSVKSFCDAVLHPKI-VED 53
L+R+ + + LNI L LL + S P I V
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SC------PLIGVIQ 245
Query: 54 FRHETSDVRAIYAEFGRLGILGCT---LRGYGCAGASHISGGLVAREIERVDS------- 103
H Y + +LG T LR Y H G + A I DS
Sbjct: 246 LAH--------YVVTAK--LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 104 -----------GYRS---------------------------MYSVQSSLVMGAIDKYGS 125
G R M S+ S+L + Y
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYV- 353
Query: 126 DKQKAKYLPELAKGNLIGCFGLTEPN-------AG--SDVANMQTRCFGLTEPNAGSDVA 176
+ +LP + + L N +G + + P +G D
Sbjct: 354 -NKTNSHLPAGKQVEI----SLV--NGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLD-- 403
Query: 177 NMQTRAKYD---PS-SNSYI-ITGSKTWISSAP-------------LADLC---ILWAKC 215
Q+R + SN ++ + +P DL + +
Sbjct: 404 --QSRIPFSERKLKFSNRFLPVA--------SPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 216 E------DPTHGPQNPQ-IRGFIIEKDTPGAPLADLCIL-----WAKC--EDATH----G 257
+ D G + + + G I E+ + D CI+ W ATH G
Sbjct: 454 DIQIPVYDTFDG-SDLRVLSGSISER------IVD-CIIRLPVKWETTTQFKATHILDFG 505
Query: 258 PQNPQIRGFIIEKDTPGYETSVI 280
P G + ++ G VI
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVI 528
Score = 28.9 bits (64), Expect = 5.4
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 57/148 (38%)
Query: 342 AR--SYMLDRVQFNKPLAANQIPQLKLA------NML--TDI-SLALVSCCQVGRLKESN 390
+ Y+ V+ +K +Q+ L L L DI +LA +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALA------------AK 107
Query: 391 LDTPEMISILKRNNCAKALDIAR----------------------NARDML--GGNGISD 426
L +++K K AR NA+ + GG G +D
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 427 EYHVIRHMNNL-EVVNTYEGTSDIHALI 453
+Y L ++ TY + LI
Sbjct: 168 DY-----FEELRDLYQTYH--VLVGDLI 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 69/513 (13%), Positives = 138/513 (26%), Gaps = 149/513 (29%)
Query: 7 LLRSYSTKFNWEDALNISSLLTQEEKL---LRDS----VKSFCDAVLHPK---IVEDFRH 56
+ +S +K + + ++ +L L V+ F + VL ++ +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 57 ETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSS-- 114
E + + + R Y + V+R + +++ ++ +
Sbjct: 101 EQRQPSMMTRMY-----IEQRDRLYN--DNQVFAKYNVSRL-QPYLKLRQALLELRPAKN 152
Query: 115 LV---MGAIDKYGSDKQ------KAKYLPELAKGNLIGCFGLTEPNAGSD---VANMQTR 162
++ + GS K Y + I F L N S + +Q
Sbjct: 153 VLIDGVL-----GSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKL 205
Query: 163 CFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLAD-LCIL---WAK---- 214
+ + +PN S + I + + S P + L +L
Sbjct: 206 LYQI-DPNWTSRSDHSSN----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 215 -----C-----------------EDPTHGPQNPQIRGF--------------IIEKDTP- 237
C TH + +D P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 238 ----GAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGS 293
P L I+ D N + +K T++I+ +S+
Sbjct: 321 EVLTTNPRR-LSIIAESIRDGLATWDN--WKHVNCDK-----LTTIIE------SSLN-V 365
Query: 294 ISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFN 353
+ R D++ + S P LL + W + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIWFDV-IKSDVMVVVNKLH------K 413
Query: 354 KPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEM-ISILKRNNCAKALDIA 412
L Q + ++ + I L LK + + SI+ N K D
Sbjct: 414 YSLVEKQPKESTIS--IPSIYL---------ELKVKLENEYALHRSIVDHYNIPKTFD-- 460
Query: 413 RNARDMLGGNGIS----DEY---HVIRHMNNLE 438
+ + D+Y H+ H+ N+E
Sbjct: 461 --------SDDLIPPYLDQYFYSHIGHHLKNIE 485
Score = 39.1 bits (90), Expect = 0.004
Identities = 71/500 (14%), Positives = 129/500 (25%), Gaps = 164/500 (32%)
Query: 8 LRSYS--TKFN----WEDALNIS------SLLTQEEKLLRDSVKSFCDAVLHPKIVEDFR 55
SY K + W LN+ ++L +KLL ++ H + +
Sbjct: 171 CLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIK 224
Query: 56 HETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSL 115
++ AE RL + + LV VQ++
Sbjct: 225 LRIHSIQ---AELRRL-----------LKSKPYENCLLVLLN-------------VQNAK 257
Query: 116 VMGAIDKYGSDKQKAKYLPELAKGNLIGCFGL--TEPNAGSDVANMQTRC--------FG 165
A + + C L T +D + T
Sbjct: 258 AWNAFN--------------------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 166 LTEPNAGSDVAN-MQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQN 224
LT S + + R + P ++T + P L I+ D N
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPRE---VLTTN-------PRR-LSIIAESIRDGLATWDN 346
Query: 225 ----------------------PQIRG-----FIIEKDTPGAPLADLCILWAKCEDATHG 257
+ R + P L ++W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVI----- 400
Query: 258 PQNPQI------RGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN 311
+ + + ++EK S+ L+ + +L + ++ +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-------HRSIV--D 451
Query: 312 SYKAP-------FTLLNSARYGIAWGV---LGAAEFC--FSMARSYMLDRVQF--NK--- 354
Y P +Y + L E ++ R LD +F K
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRH 509
Query: 355 -PLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNN----CAKAL 409
A N + N L + C E ++ ++ L + C+K
Sbjct: 510 DSTAWNASGS--ILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKYT 565
Query: 410 DIARNARDMLGGNGISDEYH 429
D+ R A M I +E H
Sbjct: 566 DLLRIAL-MAEDEAIFEEAH 584
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 15/39 (38%)
Query: 99 ERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELA 137
E+ +++ +Q+SL + Y D A P LA
Sbjct: 18 EK-----QALKKLQASLKL-----YADD--SA---PALA 41
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.2 bits (65), Expect = 3.7
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 252 EDATHGPQNPQIRGFIIEKD 271
ED +H I +
Sbjct: 240 EDKSHLMTYHSASCAIAGEG 259
Score = 28.8 bits (64), Expect = 4.5
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 216 EDPTHGPQNPQIRGFIIEKDTPGAPLADL 244
ED +H I + + D
Sbjct: 240 EDKSHLMTYHSASCAIAGEG---VDINDG 265
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 29.0 bits (65), Expect = 3.7
Identities = 29/158 (18%), Positives = 45/158 (28%), Gaps = 44/158 (27%)
Query: 110 SVQSSLVMGAID--KYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLT 167
S+ ++V +D + + +Y+PEL AGS
Sbjct: 116 SLCGTVVGALVDEGRIDPAQPVTEYVPEL---------------AGSVYDGPSVL----- 155
Query: 168 EPNAGSDVANMQTRAKY-----DPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGP 222
V +MQ Y DP+S S W + G
Sbjct: 156 ------QVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGS 209
Query: 223 Q--------NPQIRGFIIEKDTPGAPLADLCI--LWAK 250
N + +I+E+ T G + LWAK
Sbjct: 210 TGEFQYCSANTDVLAWIVERVT-GLRYVEALSTYLWAK 246
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.2 bits (65), Expect = 3.8
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 252 EDATHGPQNPQIRGFIIEKD 271
ED +H I +
Sbjct: 240 EDKSHLMTYHSASCAIAGEG 259
Score = 28.8 bits (64), Expect = 5.1
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 216 EDPTHGPQNPQIRGFIIEKDTPGAPLADL 244
ED +H I + + D
Sbjct: 240 EDKSHLMTYHSASCAIAGEG---VDINDG 265
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S
genomics center for infectious disease, ssgcid, ligase;
HET: AMP; 2.25A {Burkholderia thailandensis}
Length = 283
Score = 28.2 bits (64), Expect = 5.0
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 408 ALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALIL 454
I R A L G +Y IR NL + + + ++L
Sbjct: 221 LAAIERRAVAHLSARGWQPDYVSIRRRENLVAPSAAQIEAGDPLVVL 267
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.4 bits (63), Expect = 5.8
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 252 EDATHGPQNPQIRGFIIEKD 271
ED +H I +
Sbjct: 240 EDKSHLMTYHSASCAIAGEG 259
Score = 28.0 bits (62), Expect = 7.9
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 216 EDPTHGPQNPQIRGFIIEKDTPGAPLADL 244
ED +H I + + D
Sbjct: 240 EDKSHLMTYHSASCAIAGEG---VDINDG 265
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus}
SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Length = 361
Score = 28.2 bits (63), Expect = 6.0
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 289 SVTGSISLDNVRVS----QDQMLLLANSYKAPFTLLNSARYGIAWGVLGAA 335
G D++ V + Q L ++ P + G+ GAA
Sbjct: 86 GANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAA 136
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.4 bits (63), Expect = 6.6
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 252 EDATHGPQNPQIRGFIIEKD 271
ED +H I +
Sbjct: 240 EDKSHLMTYHSASCAIAGEG 259
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 28.0 bits (63), Expect = 7.2
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 45 VLHPKIVEDFR--HETSDVRAI 64
VL V+D R D +
Sbjct: 315 VLDKNYVKDHRTGLMRHDPENV 336
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 9.0
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 31/68 (45%)
Query: 42 CDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERV 101
C PKIVE F G + C C GLV + + V
Sbjct: 27 CKVY-PPKIVERFSE---------------GDVVCA----LC--------GLVLSD-KLV 57
Query: 102 DSG--YRS 107
D+ +R+
Sbjct: 58 DTRSEWRT 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0828 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,940,304
Number of extensions: 416025
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 94
Length of query: 464
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 367
Effective length of database: 3,993,456
Effective search space: 1465598352
Effective search space used: 1465598352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)