RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9220
(464 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 149 bits (376), Expect = 1e-42
Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 63/292 (21%)
Query: 18 EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVE-DFRHETSDVRAIYAEFGRLGILGC 76
+DA+N L++E++ LR ++ F L PK E D +E ++R + + G LG+LG
Sbjct: 2 DDAIN---GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI 58
Query: 77 TLRGYGCA-GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPE 135
T G ++ LV EI R Y S+L + + + G++ QK KYLP+
Sbjct: 59 TAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPK 118
Query: 136 LAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITG 195
L G IG ++EP NAGSDV +M+ +A+ N YI+ G
Sbjct: 119 LISGEYIGALAMSEP-------------------NAGSDVVSMKLKAEKKG--NHYILNG 157
Query: 196 SKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDAT 255
+K WI++ P AD+ I++AK +
Sbjct: 158 NKFWITNGPDADVLIVYAKTDLA------------------------------------- 180
Query: 256 HGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
P + I FI+EK PG+ TS K G+R S T + ++ ++ +L
Sbjct: 181 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANIL 232
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 132 bits (331), Expect = 2e-36
Identities = 124/299 (41%), Positives = 174/299 (58%), Gaps = 63/299 (21%)
Query: 14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
+F+W+D L + LT +E L+RD+ +++C L P+I+ R+E R I +E G LG+
Sbjct: 1 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 59
Query: 74 LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS SVQSSLVM I YGS++Q+ KYL
Sbjct: 60 LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 119
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
P+LAKG L+GCFGLTEPN+GSD ++M+TR Y+ S+ SY +
Sbjct: 120 PQLAKGELLGCFGLTEPNSGSDPSSMETRAH-------------------YNSSNKSYTL 160
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
G+KTWI+++P+ADL ++WA+CE
Sbjct: 161 NGTKTWITNSPMADLFVVWARCE------------------------------------- 183
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANS 312
+ IRGF++EK G I+GKF LRAS TG I +D V V ++ +L A+S
Sbjct: 184 ------DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 236
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 117 bits (293), Expect = 5e-31
Identities = 57/281 (20%), Positives = 99/281 (35%), Gaps = 58/281 (20%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGA 86
LT+++K + + + F + P E R + LG++ +
Sbjct: 6 LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP-VPLLKRAWELGLMNTHIPESFGGLG 64
Query: 87 SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFG 146
I + E ++L + G+ +Q+ KYL + + L+ +
Sbjct: 65 LGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYC 124
Query: 147 LTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206
+TEP AGSDVA ++T+A+ + YII G K WI++ A
Sbjct: 125 VTEP-------------------GAGSDVAGIKTKAEKKG--DEYIINGQKMWITNGGKA 163
Query: 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGF 266
+ L A+ + P + GF
Sbjct: 164 NWYFLLARSDPD------------------------------------PKAPASKAFTGF 187
Query: 267 IIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
I+E DTPG + + G R S T I ++VRV ++ +L
Sbjct: 188 IVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVL 228
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 113 bits (283), Expect = 2e-30
Identities = 111/151 (73%), Positives = 124/151 (82%)
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
PF LN+ARYGIAWGVLGA+EFC AR Y LDR+QF PLA NQ+ Q KLA+MLT+I
Sbjct: 2 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
+L L +C Q+GRLK+ + PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 62 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 121
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 122 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 152
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 111 bits (277), Expect = 9e-29
Identities = 52/288 (18%), Positives = 96/288 (33%), Gaps = 62/288 (21%)
Query: 20 ALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLR 79
++ S L +E+K + F + P + E + E + + +LG G ++
Sbjct: 3 CIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFP-VDVMRKAAQLGFGGVYIQ 61
Query: 80 GYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKG 139
V E + Y ++ ID +G+++Q+ K+ P L
Sbjct: 62 TDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPL--- 118
Query: 140 NLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTW 199
+ + LTEP +GSD A++ T AK + YI+ GSK +
Sbjct: 119 ----------------CTMEKFASYCLTEPGSGSDAASLLTSAKKQG--DHYILNGSKAF 160
Query: 200 ISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQ 259
IS A +D+ ++ + P
Sbjct: 161 ISGAGESDIYVVMCRTGGPGP--------------------------------------- 181
Query: 260 NPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
I ++EK TPG + K G + T ++ ++ V +
Sbjct: 182 -KGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 228
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 107 bits (266), Expect = 3e-27
Identities = 55/282 (19%), Positives = 100/282 (35%), Gaps = 58/282 (20%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGA 86
EE+ + + F A + P E R + + G+ G +
Sbjct: 6 EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFP-WDLVRKLAEFGVFGALVPEAYGGAG 64
Query: 87 -SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
S + I D + +SL G I GS+ QK +LP+LA G +G +
Sbjct: 65 LSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAW 124
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
GLT EP +GSD A ++T+A+ + + G+K +I+ +
Sbjct: 125 GLT-------------------EPGSGSDAAALKTKAEKVE--GGWRLNGTKQFITQGSV 163
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A + ++ A+ + P + ++ I
Sbjct: 164 AGVYVVMARTDPPPSPER-----------------------------------KHQGISA 188
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
F + G + + K GL AS T + L+++ V ++ +L
Sbjct: 189 FAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 230
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 103 bits (256), Expect = 7e-26
Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 62/282 (21%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAG 85
L + ++LR + + F + L P + + + + G LG+L + AG
Sbjct: 7 LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP-TSQVKKMGELGLLAMDVPEELSGAG 65
Query: 86 ASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCF 145
+++ + EI R + + SV +SL +G I K+GS +QK +++ G+ IG
Sbjct: 66 LDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIG-- 123
Query: 146 GLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPL 205
CF L+EP GSD T A+ + +S+++ G+K WI+++
Sbjct: 124 -----------------CFALSEPGNGSDAGAASTTAREEG--DSWVLNGTKAWITNSWE 164
Query: 206 ADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRG 265
A +++A + N I
Sbjct: 165 ASATVVFASTDRSRQ---------------------------------------NKGISA 185
Query: 266 FIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
F++ TPG + K G+RAS T ++ ++ R+ ++ +L
Sbjct: 186 FLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLL 227
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 98.0 bits (243), Expect = 6e-25
Identities = 44/148 (29%), Positives = 66/148 (44%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+K LN R +A G +G A AR Y +R F +P+A Q Q KL +ML
Sbjct: 4 FKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIG 63
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
I A + L + L +I K A + A A + GG G E+ V +
Sbjct: 64 IETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEK 123
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAITG 460
+ ++++ YEGT++I LI+ R I
Sbjct: 124 LLRDVKLNQIYEGTNEIQRLIIARHILA 151
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 96.9 bits (240), Expect = 1e-24
Identities = 47/146 (32%), Positives = 68/146 (46%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+K L+ R G+A LG AE + A Y RVQF KPL Q KLA+M
Sbjct: 4 FKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQ 63
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
I A + K+ +I KR A+ + A + GG G S+EY V R
Sbjct: 64 IEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVAR 123
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAI 458
HM + ++ YEGT+++ ++ G A+
Sbjct: 124 HMRDAKITQIYEGTNEVQLMVTGGAL 149
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 98.2 bits (243), Expect = 3e-24
Identities = 52/281 (18%), Positives = 98/281 (34%), Gaps = 61/281 (21%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGA 86
LT+E++ L+ + F V+ P E E + + +G+L +
Sbjct: 5 LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP-WPVIEKLHEVGLLNAIIPEEYGGMG 63
Query: 87 SHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFG 146
+ ++ E + S L + + G+++QK ++L
Sbjct: 64 LKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRP----------- 112
Query: 147 LTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLA 206
F L+EP GSD A ++TRA + Y++ G+K WIS+ A
Sbjct: 113 --------LTEKPALAAFALSEPGNGSDAAALKTRAIRQG--DHYVLNGTKMWISNGGEA 162
Query: 207 DLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGF 266
+ +++A + +
Sbjct: 163 EWVVVFATVNPELR---------------------------------------HKGVVAL 183
Query: 267 IIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
++E+ TPG++ I GK G RAS T + ++V+V + L
Sbjct: 184 VVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRL 224
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 97.9 bits (243), Expect = 1e-23
Identities = 43/300 (14%), Positives = 84/300 (28%), Gaps = 56/300 (18%)
Query: 9 RSYSTKFNWEDALNISSLLTQEEKL-LRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAE 67
R+ +T FN E +I L E R +++ P + + + +
Sbjct: 9 RASAT-FNPELITHI--LDGSPENTRRRREIENLILN--DPDFQHEDYNFLTRSQRYEVA 63
Query: 68 FGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDK 127
+ + +R YG + I V G+ + + + + + +
Sbjct: 64 VKKSATMVKKMREYGISDPEEIMW-----FKNSVHRGHPEPLDLHLGMFLPTLLHQATAE 118
Query: 128 QKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPS 187
Q+ ++ + G + TE G+ + ++T +
Sbjct: 119 QQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTA--------------TYDPKTQEFI 164
Query: 188 SNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCIL 247
NS +T K W + + F++
Sbjct: 165 LNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYG--LHAFVV--------------- 207
Query: 248 WAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
IR K PG I KFG G + +DN R+ ++ ML
Sbjct: 208 --------------PIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 93.2 bits (230), Expect = 3e-23
Identities = 31/148 (20%), Positives = 62/148 (41%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+ L+ R +A G LG + Y+ R F + + Q+ Q K+A+M T
Sbjct: 3 VYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTR 62
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ V + + T + + + + A +A + GGNG +++ + R
Sbjct: 63 LMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGR 122
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAITG 460
+ + ++ GTS++ L++GRA
Sbjct: 123 FLRDAKLYEIGAGTSEVRRLVIGRAFNA 150
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 91.5 bits (226), Expect = 1e-22
Identities = 36/146 (24%), Positives = 62/146 (42%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+ +L+ R GIA +G + A +Y R F +P+A + KLA T+
Sbjct: 4 FYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATE 63
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ A + + LK++ + K A+ A +LGG G +Y V R
Sbjct: 64 LEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVER 123
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAI 458
+ + + EGTS+I L++ R +
Sbjct: 124 YWRDARLTRIGEGTSEILKLVIARRL 149
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 94.0 bits (233), Expect = 3e-22
Identities = 47/302 (15%), Positives = 90/302 (29%), Gaps = 60/302 (19%)
Query: 9 RSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEF 68
R+ + F+ ED + I ++ + D + + P + R S +
Sbjct: 10 RNKAE-FDVED-MKIVWAGSRHAFEVSDRIARLVAS--DPVFEKSNRARLSRKELFKSTL 65
Query: 69 GRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQ 128
+ + + G + I++ + + + + AI G+++Q
Sbjct: 66 RKCAHAFKRIIELR---LNEEEAGRLRHFIDQP-----AYVDLHWGMFVPAIKGQGTEEQ 117
Query: 129 KAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSS 188
+ K+L K +IGC+ TE GS+V ++T +
Sbjct: 118 QKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA--------------TLDPKTDEFVI 163
Query: 189 NSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILW 248
++ T SK W + I GFI++ +
Sbjct: 164 HTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYG--IHGFIVQLRSLEDH-------- 213
Query: 249 AKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFG---LRASVTGSISLDNVRVSQDQ 305
P I K G + G + D+VR+ +DQ
Sbjct: 214 ---------------------SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQ 252
Query: 306 ML 307
ML
Sbjct: 253 ML 254
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 92.8 bits (229), Expect = 4e-22
Identities = 66/285 (23%), Positives = 102/285 (35%), Gaps = 64/285 (22%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGA 86
LT ++ F + L P + E D + + E LGI G
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYD-KELIDELLSLGITGAYFEEKYGGSG 63
Query: 87 SHISG----GLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLI 142
L E+ + D+G S SL I ++G++ QK K+L L +G +
Sbjct: 64 DDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKL 123
Query: 143 GCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISS 202
G FGLTEPNAG+D + QT A + +Y + GSK +I++
Sbjct: 124 G-------------------AFGLTEPNAGTDASGQQTIATKND-DGTYTLNGSKIFITN 163
Query: 203 APLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQ 262
AD+ I++A + N
Sbjct: 164 GGAADIYIVFAMTDK---------------------------------------SKGNHG 184
Query: 263 IRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
I FI+E TPG+ + K G+ S T + +V+V + ML
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 87.2 bits (215), Expect = 1e-20
Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 19/158 (12%)
Query: 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK-------PLAANQIPQLKLANMLTD 372
+ R I A +A Y R QF + + Q +L +L
Sbjct: 9 MVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLAS 68
Query: 373 ISLALVSCCQVGRLKESNLDTPE------------MISILKRNNCAKALDIARNARDMLG 420
+ L + + LK D R + G
Sbjct: 69 AYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCG 128
Query: 421 GNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
G+G + TYEG + + L + R +
Sbjct: 129 GHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFL 166
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 85.8 bits (211), Expect = 2e-20
Identities = 41/146 (28%), Positives = 63/146 (43%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+K L+ R GIA LG A+ A Y +R F PL Q Q KLA+M
Sbjct: 3 FKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALA 62
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ A + + LK++ + ++ K A I+ A +LGG G E R
Sbjct: 63 LESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAER 122
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAI 458
+ + + YEGTS+I L++ +
Sbjct: 123 YYRDARITEIYEGTSEIQRLVIAGHL 148
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 82.4 bits (202), Expect = 2e-19
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+ LN R IA LGAA + R ++ R QF +PLA+NQ Q LA+M T
Sbjct: 4 FLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATR 63
Query: 373 -ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVI 431
++ L+ L+E D + S+ K + I A M GG G +Y V
Sbjct: 64 LVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQ 123
Query: 432 RHMNNLEVVNTYEGTSDIHALILGRAI 458
+++ + V EG++++ +++ R++
Sbjct: 124 QYVRDSRVHQILEGSNEVMRILISRSL 150
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 82.0 bits (201), Expect = 4e-19
Identities = 44/148 (29%), Positives = 67/148 (45%)
Query: 313 YKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTD 372
+K + R +A G +G A+ A Y L+R F K LA +Q LA+M
Sbjct: 4 FKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMK 63
Query: 373 ISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ LA +S + +S SI K A +A +A + GGNG + EY V +
Sbjct: 64 VELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEK 123
Query: 433 HMNNLEVVNTYEGTSDIHALILGRAITG 460
M + ++ YEGT+ I +I+ R G
Sbjct: 124 LMRDAKIYQIYEGTAQIQRIIIAREHIG 151
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 76.8 bits (188), Expect = 5e-17
Identities = 23/155 (14%), Positives = 40/155 (25%), Gaps = 19/155 (12%)
Query: 323 ARYGIAWGVLGAAEFCFSMARSYMLDRVQFNK-------PLAANQIPQLKLANMLTDISL 375
R + + ++A Y R Q + Q Q KL +L
Sbjct: 4 VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYA 63
Query: 376 ALVSCCQVGRLKESNLDTPE------------MISILKRNNCAKALDIARNARDMLGGNG 423
+ ++ + + LK A R GG+G
Sbjct: 64 FHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHG 123
Query: 424 ISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAI 458
S + T+EG + + L R +
Sbjct: 124 YSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFL 158
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 75.1 bits (183), Expect = 8e-17
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVS 379
L R +AWG +G C + A ++ R QF +PL +Q+ +A++ T +A
Sbjct: 10 LAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARV 69
Query: 380 CCQVGRLKESNLDTPEMISILKRNNCAKALDI-ARNARDMLGGNGISDEYHVIRHMNNLE 438
C + +IL ++ A+ A A +L G + + V R + +
Sbjct: 70 CEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAK 129
Query: 439 VVNTYEGTSDIHALILGRAITGI 461
++ EG+S++ ++L + +
Sbjct: 130 LMEIIEGSSEMCRVMLAQHALAL 152
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 76.6 bits (188), Expect = 3e-16
Identities = 25/208 (12%), Positives = 51/208 (24%), Gaps = 68/208 (32%)
Query: 118 GAIDKYGSD--KQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDV 175
KYG++ K +YL + + +LI +T+P +A
Sbjct: 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSA------------QKD 165
Query: 176 ANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKD 235
++ R + + ++ G+K + + + I+
Sbjct: 166 PDLFLRI-VEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT----------------- 207
Query: 236 TPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGS-- 293
F D G + R G+
Sbjct: 208 ---------------------EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADI 246
Query: 294 -------------ISLDNVRVSQDQMLL 308
+ DNV + D++ L
Sbjct: 247 DLGNKQFGGQEALVVFDNVFIPNDRIFL 274
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 76.4 bits (186), Expect = 3e-16
Identities = 36/302 (11%), Positives = 71/302 (23%), Gaps = 70/302 (23%)
Query: 27 LTQEEKLLRDSVKSFCDAVLHPKIVE-----DFRHETSDVRAIYAEFGRLGILGCTL--- 78
L+ + R ++F + VL E D R Y E R G++ +
Sbjct: 5 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64
Query: 79 --RGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPEL 136
I + + +++ K
Sbjct: 65 LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISG-- 122
Query: 137 AKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGS 196
+G + +EPN ++ + N ++I+G
Sbjct: 123 -EGEPLASLMHSEPNGTANWLQKGG----------------PGLQTTARKVGNEWVISGE 165
Query: 197 KTWISSAPLADLC-----ILWAKCEDPTHGPQNP------QIRGFIIEKDTPGAPLADLC 245
K W S++ D + + D PQ+P QI ++ ++T
Sbjct: 166 KLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIA------- 218
Query: 246 ILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQ 305
Y+ G + V +
Sbjct: 219 -----------------------NNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHEN 255
Query: 306 ML 307
+L
Sbjct: 256 LL 257
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 61.5 bits (148), Expect = 8e-12
Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 11/158 (6%)
Query: 318 TLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQF-NKPLAANQIPQLKLANMLTDISLA 376
T + + +G A F A + + +K + +Q KL + + +
Sbjct: 11 TAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETS 70
Query: 377 LVSCCQVGRLKESNLDTPE----MISILKRNNCAKALDIARNARDMLGGNGISDEYHVIR 432
+ + E + M K A++ +A +G + + R
Sbjct: 71 RLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPR 130
Query: 433 HMNNLEVVNTYEGTSD------IHALILGRAITGIQAF 464
+N + ++G + + ++ A
Sbjct: 131 LLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAAT 168
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 51.3 bits (121), Expect = 5e-08
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 245 CILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQD 304
+A ++ ++ DTPG + G RA+ + LD VRV
Sbjct: 143 AAAYADHLVVFGLQEDGSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAG 202
Query: 305 QML 307
+L
Sbjct: 203 AVL 205
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
[TaxId: 63363]}
Length = 485
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 4 FRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRA 63
FR + + E A+N + + L + + F I ED T +VR
Sbjct: 288 FRGFEAYWEVPYGEETAVNGRWVKAPGKTLFKKLLSYFPKNPF---IAEDLGFITDEVRY 344
Query: 64 IYAEFGRLGI 73
+ F G
Sbjct: 345 LRETFKIPGS 354
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Murine minute virus, strain i [TaxId: 10794]}
Length = 549
Score = 27.6 bits (61), Expect = 4.1
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 169 PNAGSDVANMQTRAKYDPSSNSYIITGS----KTWISSAPLADLCILWAKCEDPTHGPQN 224
P + + + + S T+ +P+ +W K D H P+
Sbjct: 384 PPPLNGILTNANPIGTKNDIHFSNVFNSYGPLTTFSHPSPVYPQGQIWDKELDLEHKPRL 443
Query: 225 PQIRGFIIEKDTPG 238
F+ + + PG
Sbjct: 444 HITAPFVCKNNAPG 457
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 27.4 bits (60), Expect = 4.8
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 4 FRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRA 63
FR ++ + A+ + + L +++ + I ED T DV
Sbjct: 322 FRGFAGFWAVPSEEKIAILGRWKVGPGKPLFDAILQAVGKINI---IAEDLGVITEDVVQ 378
Query: 64 IYAEFGRLGI 73
+ G+
Sbjct: 379 LRKSIEAPGM 388
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 26.6 bits (59), Expect = 7.9
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 91 GGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQ-----KAKYLP 134
G V G + S L+ AI YG D A YLP
Sbjct: 15 GKEPVALFREVYHGAITATSYAEILLNQAIRTYGPDHPVGYPDTAYYLP 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,659,330
Number of extensions: 74723
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 40
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)