Query psy9223
Match_columns 457
No_of_seqs 354 out of 3037
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:03:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11029 FtsH protease regulat 100.0 1.5E-40 3.3E-45 327.7 29.2 255 57-435 13-330 (334)
2 KOG2621|consensus 100.0 4.8E-41 1E-45 310.8 9.3 228 52-279 43-283 (288)
3 TIGR01932 hflC HflC protein. H 100.0 3.7E-38 8E-43 312.0 27.8 251 57-431 13-316 (317)
4 cd03403 Band_7_stomatin_like B 100.0 6.7E-37 1.4E-41 288.2 27.0 201 67-269 1-215 (215)
5 PRK10930 FtsH protease regulat 100.0 1.5E-36 3.4E-41 307.0 21.9 208 55-264 88-342 (419)
6 TIGR01933 hflK HflK protein. H 100.0 2.6E-34 5.5E-39 278.4 30.6 163 64-228 1-179 (261)
7 cd03407 Band_7_4 A subgroup of 100.0 1.4E-34 3E-39 280.0 26.1 206 69-277 1-258 (262)
8 cd03405 Band_7_HflC Band_7_Hfl 100.0 1E-33 2.3E-38 271.3 30.1 170 64-234 1-188 (242)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 6.8E-33 1.5E-37 269.3 20.1 168 57-226 8-204 (266)
10 cd03406 Band_7_3 A subgroup of 100.0 6.2E-31 1.4E-35 253.5 25.7 171 61-233 2-201 (280)
11 cd03401 Band_7_prohibitin Band 100.0 1.1E-30 2.4E-35 242.4 22.2 171 63-234 1-191 (196)
12 cd03402 Band_7_2 A subgroup of 100.0 4.7E-31 1E-35 247.4 19.8 163 63-227 1-183 (219)
13 COG0330 HflC Membrane protease 100.0 1.9E-30 4.1E-35 255.4 23.9 211 57-269 14-277 (291)
14 KOG2620|consensus 100.0 4.7E-33 1E-37 254.4 5.0 202 65-397 10-216 (301)
15 smart00244 PHB prohibitin homo 99.9 3.1E-26 6.8E-31 205.0 18.6 144 62-207 1-159 (160)
16 PF01145 Band_7: SPFH domain / 99.9 1.9E-26 4.1E-31 210.3 13.8 159 65-225 1-179 (179)
17 KOG3090|consensus 99.9 4E-24 8.6E-29 191.3 14.0 209 57-270 31-274 (290)
18 cd03407 Band_7_4 A subgroup of 99.9 2.6E-21 5.6E-26 187.3 16.5 117 280-396 83-201 (262)
19 PRK10930 FtsH protease regulat 99.9 2.6E-20 5.7E-25 189.0 19.1 141 280-421 182-343 (419)
20 KOG2668|consensus 99.8 7.6E-19 1.7E-23 166.9 25.0 332 64-413 2-366 (428)
21 KOG2621|consensus 99.8 8.2E-21 1.8E-25 176.6 11.3 144 280-436 142-285 (288)
22 cd03403 Band_7_stomatin_like B 99.8 2.5E-18 5.4E-23 161.8 16.7 129 282-423 86-214 (215)
23 PRK11029 FtsH protease regulat 99.8 3E-18 6.5E-23 169.6 16.7 161 282-454 119-326 (334)
24 KOG3083|consensus 99.8 7.3E-19 1.6E-23 157.6 10.2 211 58-269 21-263 (271)
25 COG0330 HflC Membrane protease 99.8 6.9E-18 1.5E-22 166.2 18.0 142 280-421 112-273 (291)
26 cd03408 Band_7_5 A subgroup of 99.8 6.9E-18 1.5E-22 157.8 15.6 147 59-207 11-206 (207)
27 TIGR01933 hflK HflK protein. H 99.8 1.2E-17 2.6E-22 161.9 16.8 150 280-429 86-256 (261)
28 TIGR01932 hflC HflC protein. H 99.7 3.3E-17 7.1E-22 162.5 15.5 164 282-454 119-316 (317)
29 KOG2962|consensus 99.7 2.2E-16 4.8E-21 142.3 18.4 147 58-205 17-184 (322)
30 COG2268 Uncharacterized protei 99.7 2.7E-16 5.8E-21 161.1 20.6 176 59-234 29-241 (548)
31 cd03404 Band_7_HflK Band_7_Hfl 99.7 7.8E-16 1.7E-20 149.6 16.3 130 281-410 114-248 (266)
32 cd03405 Band_7_HflC Band_7_Hfl 99.7 1.4E-15 3E-20 145.8 16.0 131 281-411 92-241 (242)
33 cd03406 Band_7_3 A subgroup of 99.6 2E-15 4.4E-20 145.9 14.2 87 283-370 99-196 (280)
34 cd03400 Band_7_1 A subgroup of 99.6 1.9E-15 4.2E-20 129.6 11.7 103 104-207 3-123 (124)
35 cd03399 Band_7_flotillin Band_ 99.6 2.8E-15 6E-20 129.4 10.8 103 104-206 2-126 (128)
36 KOG2620|consensus 99.6 2.7E-15 5.8E-20 138.2 8.4 174 10-228 7-187 (301)
37 cd03401 Band_7_prohibitin Band 99.5 1.5E-13 3.2E-18 127.4 11.8 101 282-386 94-194 (196)
38 cd02106 Band_7 The band 7 doma 99.4 8.1E-12 1.8E-16 105.6 13.3 103 105-207 3-120 (121)
39 cd03402 Band_7_2 A subgroup of 99.4 1.6E-12 3.4E-17 122.2 9.7 90 280-369 87-183 (219)
40 KOG3090|consensus 99.3 5.2E-12 1.1E-16 113.9 8.3 129 284-428 132-277 (290)
41 PF01145 Band_7: SPFH domain / 99.0 9.5E-10 2.1E-14 99.9 8.9 88 280-367 91-179 (179)
42 PF13421 Band_7_1: SPFH domain 99.0 2.4E-08 5.3E-13 93.1 18.1 146 61-208 13-207 (211)
43 cd03400 Band_7_1 A subgroup of 99.0 6.7E-10 1.4E-14 95.2 6.5 69 281-349 54-123 (124)
44 KOG3083|consensus 98.9 1.2E-09 2.6E-14 98.8 5.8 135 284-422 121-261 (271)
45 cd03399 Band_7_flotillin Band_ 98.7 9.5E-09 2.1E-13 88.5 4.7 67 280-346 58-124 (128)
46 smart00244 PHB prohibitin homo 98.7 4.9E-08 1.1E-12 86.9 7.5 68 282-349 91-159 (160)
47 cd03408 Band_7_5 A subgroup of 98.5 8.8E-08 1.9E-12 89.4 5.0 69 281-349 136-206 (207)
48 cd02106 Band_7 The band 7 doma 98.5 2.6E-07 5.6E-12 77.7 7.1 70 281-350 52-121 (121)
49 KOG2962|consensus 98.2 5.7E-05 1.2E-09 69.1 15.3 60 289-348 123-185 (322)
50 COG4260 Membrane protease subu 98.2 4.6E-05 1E-09 71.9 14.6 147 61-208 38-234 (345)
51 PTZ00491 major vault protein; 98.0 0.0028 6E-08 69.1 25.9 167 65-234 465-692 (850)
52 KOG2668|consensus 97.6 0.00024 5.1E-09 69.0 8.5 86 284-369 100-187 (428)
53 PF13421 Band_7_1: SPFH domain 96.2 0.017 3.6E-07 54.1 7.5 56 295-350 152-207 (211)
54 COG2268 Uncharacterized protei 96.0 0.029 6.4E-07 58.8 8.9 87 283-369 141-234 (548)
55 PF12127 YdfA_immunity: SigmaW 94.5 0.44 9.5E-06 45.5 10.8 118 104-227 120-249 (316)
56 COG1580 FliL Flagellar basal b 92.1 1.3 2.8E-05 39.5 9.3 72 123-195 76-157 (159)
57 PRK13665 hypothetical protein; 92.0 0.78 1.7E-05 43.6 8.2 116 104-225 125-252 (316)
58 PTZ00491 major vault protein; 89.1 3.7 8.1E-05 45.5 11.3 65 284-348 577-651 (850)
59 COG4260 Membrane protease subu 87.9 1.1 2.3E-05 43.2 5.5 54 298-351 182-235 (345)
60 PF03748 FliL: Flagellar basal 85.4 10 0.00022 30.4 9.6 52 141-194 43-96 (99)
61 PF11978 MVP_shoulder: Shoulde 84.9 5.3 0.00011 33.4 7.4 80 117-196 10-116 (118)
62 PRK07718 fliL flagellar basal 84.9 5.8 0.00012 34.6 8.3 70 123-194 62-139 (142)
63 PRK06654 fliL flagellar basal 80.5 13 0.00029 33.7 8.9 75 117-194 92-176 (181)
64 PRK12785 fliL flagellar basal 71.5 46 0.001 29.8 10.0 69 124-194 87-163 (166)
65 PRK04057 30S ribosomal protein 70.9 31 0.00066 32.0 8.9 77 116-192 100-184 (203)
66 PF12127 YdfA_immunity: SigmaW 69.7 61 0.0013 31.4 10.6 88 290-382 175-262 (316)
67 COG1580 FliL Flagellar basal b 69.7 6.9 0.00015 34.8 4.2 54 283-337 102-157 (159)
68 PRK07021 fliL flagellar basal 67.6 64 0.0014 28.7 10.1 72 123-194 78-159 (162)
69 PRK05697 flagellar basal body- 64.9 38 0.00081 29.4 7.8 54 141-194 77-134 (137)
70 PRK13665 hypothetical protein; 64.5 1.1E+02 0.0024 29.5 11.2 83 295-383 185-268 (316)
71 PRK08455 fliL flagellar basal 55.7 98 0.0021 28.2 9.2 68 125-194 104-179 (182)
72 PF01015 Ribosomal_S3Ae: Ribos 55.6 54 0.0012 30.2 7.5 76 116-191 106-189 (194)
73 PRK05696 fliL flagellar basal 55.6 97 0.0021 27.8 9.1 70 125-194 88-167 (170)
74 PRK01558 V-type ATP synthase s 52.4 1.1E+02 0.0024 28.1 9.2 42 343-384 9-54 (198)
75 COG1890 RPS1A Ribosomal protei 50.3 1.6E+02 0.0035 27.4 9.5 78 116-193 108-193 (214)
76 COG5499 Predicted transcriptio 46.6 1.1E+02 0.0023 25.4 6.9 95 226-326 13-113 (120)
77 PF03748 FliL: Flagellar basal 41.2 52 0.0011 26.1 4.6 53 282-336 42-96 (99)
78 PTZ00399 cysteinyl-tRNA-synthe 40.6 2.5E+02 0.0053 31.1 11.0 45 313-358 519-569 (651)
79 PRK01005 V-type ATP synthase s 40.3 2.2E+02 0.0048 26.5 9.1 12 371-382 46-57 (207)
80 PRK07718 fliL flagellar basal 38.6 48 0.001 28.8 4.2 50 285-336 88-139 (142)
81 PRK06568 F0F1 ATP synthase sub 36.8 3E+02 0.0065 24.3 9.9 17 297-313 27-44 (154)
82 PRK05697 flagellar basal body- 34.7 60 0.0013 28.1 4.1 53 284-336 78-134 (137)
83 PRK01558 V-type ATP synthase s 33.8 2.8E+02 0.006 25.5 8.7 17 350-366 29-45 (198)
84 PRK09098 type III secretion sy 30.7 4.7E+02 0.01 24.8 10.0 41 345-385 32-72 (233)
85 PRK08455 fliL flagellar basal 30.7 76 0.0016 28.9 4.3 50 285-336 128-179 (182)
86 PF03179 V-ATPase_G: Vacuolar 30.0 1.1E+02 0.0024 24.8 4.9 40 344-383 4-45 (105)
87 PLN03086 PRLI-interacting fact 27.9 2.8E+02 0.0061 30.0 8.5 7 415-421 90-96 (567)
88 PTZ00399 cysteinyl-tRNA-synthe 27.3 4.9E+02 0.011 28.8 10.6 46 172-218 520-571 (651)
89 COG4864 Uncharacterized protei 26.9 5.4E+02 0.012 24.2 9.8 82 119-203 139-232 (328)
90 TIGR01147 V_ATP_synt_G vacuola 25.0 4E+02 0.0086 22.3 7.2 38 345-382 7-46 (113)
91 KOG0994|consensus 25.0 1.2E+03 0.027 27.7 20.1 30 340-369 1559-1588(1758)
92 PRK08404 V-type ATP synthase s 24.9 3.7E+02 0.008 21.9 7.0 23 345-367 4-26 (103)
93 PRK07021 fliL flagellar basal 21.0 1.5E+02 0.0033 26.2 4.4 52 285-336 104-159 (162)
94 PTZ00321 ribosomal protein L11 20.6 2.4E+02 0.0052 27.9 5.7 67 292-361 144-221 (342)
95 PTZ00321 ribosomal protein L11 20.5 5.9E+02 0.013 25.3 8.3 41 150-190 144-195 (342)
96 PRK02292 V-type ATP synthase s 20.5 6.3E+02 0.014 22.7 10.0 10 422-431 123-132 (188)
97 PRK09173 F0F1 ATP synthase sub 20.3 5.8E+02 0.013 22.2 9.9 10 339-348 24-33 (159)
No 1
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.5e-40 Score=327.73 Aligned_cols=255 Identities=19% Similarity=0.331 Sum_probs=218.9
Q ss_pred EEeeCCceeeecceeEEEEEEeceEeeC-----cccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE
Q psy9223 57 VSFDVPPQEIVQEYERAVIFRLGRVREG-----GPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV 131 (457)
Q Consensus 57 ~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~-----~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~ 131 (457)
++|+++|+++|++||+|||++|||+++. .+++|||||++||++++.++|+|.+.++.+++.++|+|++.|+||++
T Consensus 13 ~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~ 92 (334)
T PRK11029 13 LVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSY 92 (334)
T ss_pred HHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEE
Confidence 4577889999999999999999999842 15899999999999999999999999999999999999999999999
Q ss_pred EEEEec------------------hhHHHHHHHHHHHHHccCcHHHHHh-hHHHHHHHHHHHHHhh--------------
Q psy9223 132 VYYRRF------------------LRKRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHA-------------- 178 (457)
Q Consensus 132 v~yrI~------------------~~l~~~~~~alR~vi~~~~l~~l~~-~R~~i~~~i~~~l~~~-------------- 178 (457)
++|||. ..+.+.+++++|+++|+++++++++ +|+++..++++.+++.
T Consensus 93 V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~ 172 (334)
T PRK11029 93 IKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD 172 (334)
T ss_pred EEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 999997 2234567899999999999999998 5999999999999854
Q ss_pred -------------------------ccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 179 -------------------------TEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKE 233 (457)
Q Consensus 179 -------------------------l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~ae 233 (457)
+..|||+|.+|.|++++||+++.++|+++++|||+++|...+|||++++.+..++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~ 252 (334)
T PRK11029 173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT 252 (334)
T ss_pred cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999877766
Q ss_pred HHHHHhcChHHHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhhhhhhhHhhhhhcccccCcccHHHHHhhHHHHHHHH
Q psy9223 234 AADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAM 313 (457)
Q Consensus 234 a~~~~~~~~~~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i 313 (457)
|...
T Consensus 253 A~~e---------------------------------------------------------------------------- 256 (334)
T PRK11029 253 ADYE---------------------------------------------------------------------------- 256 (334)
T ss_pred HHhH----------------------------------------------------------------------------
Confidence 6210
Q ss_pred HHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy9223 314 QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQK 393 (457)
Q Consensus 314 ~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~ 393 (457)
..++.|+-++++.+++|||++++.+..++| +.++
T Consensus 257 ---------------------------------~~~~~AeA~~~a~i~~aegeA~a~~~~~~a---~~~~---------- 290 (334)
T PRK11029 257 ---------------------------------VTRTLAEAERQGRIMRGEGDAEAAKLFADA---FSQD---------- 290 (334)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HhcC----------
Confidence 011224444677888888888888777766 3333
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHhhh
Q psy9223 394 IQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSIS 435 (457)
Q Consensus 394 a~~~~~~~~r~le~~~~i~~~~~~~~v~~~~~~~~~~~~~~~ 435 (457)
++|+.+++||++|++.++++++++++|++++|+.+|+++.
T Consensus 291 --p~~~~~~~~lea~~~~~~~~~~~~vl~~~~~~~~~l~~~~ 330 (334)
T PRK11029 291 --PDFYAFIRSLRAYENSFSGNQDVMVLSPDSDFFRYMKTPT 330 (334)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcEEEECCChHHHHHhhccc
Confidence 4567799999999999988888899999999999997553
No 2
>KOG2621|consensus
Probab=100.00 E-value=4.8e-41 Score=310.81 Aligned_cols=228 Identities=71% Similarity=1.012 Sum_probs=216.9
Q ss_pred EEEEEEEeeCCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE
Q psy9223 52 VDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV 131 (457)
Q Consensus 52 i~v~~~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~ 131 (457)
+++-..+-+++|+++|+++|++|++|+|+....+..|||+.|.+|+||++.+||+|.+.+++++++++|+|...|.||++
T Consensus 43 vi~TfP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAv 122 (288)
T KOG2621|consen 43 VLMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAV 122 (288)
T ss_pred HHHHhHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceE
Confidence 33344555678999999999999999999986678899999999999999999999999999999999999999999999
Q ss_pred EEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcH
Q psy9223 132 VYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQ 198 (457)
Q Consensus 132 v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~ 198 (457)
|+|||. .+.+.+++++||+++|+.++.|++++|+.+..+++..|++.+..|||+|++|+|+||.+|.
T Consensus 123 Vyyri~dpi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~ 202 (288)
T KOG2621|consen 123 VYYRISDPIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPA 202 (288)
T ss_pred EEEEecCHHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechH
Confidence 999999 6778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhh
Q psy9223 199 QLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMK 278 (457)
Q Consensus 199 ~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~ 278 (457)
+.+++|....+|.+++.|+++.||||..|.+++++|+..++++|..++||||+++..++...|+++++|.|.+.+..++.
T Consensus 203 qlqramaaeAeA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia~e~~~tivfP~p~e~l~~~~~ 282 (288)
T KOG2621|consen 203 QLQRAMAAEAEATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIAAEKNSTIVFPLPIDLLTALMS 282 (288)
T ss_pred hhhhhhhchhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhhcCCCCCcccCCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred h
Q psy9223 279 N 279 (457)
Q Consensus 279 ~ 279 (457)
.
T Consensus 283 ~ 283 (288)
T KOG2621|consen 283 K 283 (288)
T ss_pred c
Confidence 4
No 3
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=3.7e-38 Score=311.98 Aligned_cols=251 Identities=20% Similarity=0.311 Sum_probs=205.9
Q ss_pred EEeeCCceeeecceeEEEEEEeceEeeC-----cccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE
Q psy9223 57 VSFDVPPQEIVQEYERAVIFRLGRVREG-----GPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV 131 (457)
Q Consensus 57 ~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~-----~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~ 131 (457)
++|+++|+++|++||+||+++||++++. ++++||+||++||++++..+|+|.++++.+.+.++|+|+++|+|+++
T Consensus 13 ~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~ 92 (317)
T TIGR01932 13 IVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTY 92 (317)
T ss_pred HHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEE
Confidence 5567889999999999999999999732 13479999999999999999999999999889999999999999999
Q ss_pred EEEEec------------------hhHHHHHHHHHHHHHccCcHHHHHhh-HHHH-------------------------
Q psy9223 132 VYYRRF------------------LRKRLLAATTLRNVLGTRNLAEILSE-RESI------------------------- 167 (457)
Q Consensus 132 v~yrI~------------------~~l~~~~~~alR~vi~~~~l~~l~~~-R~~i------------------------- 167 (457)
++|||. ..+.+.+++++|+++|++++++++++ |+++
T Consensus 93 V~yrV~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (317)
T TIGR01932 93 IRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKG 172 (317)
T ss_pred EEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchh
Confidence 999999 12666788999999999999999975 6655
Q ss_pred ----HHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Q psy9223 168 ----SHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPA 243 (457)
Q Consensus 168 ----~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~ 243 (457)
...+++.+...+.+|||+|.+|.|++++||+++.++|++++.|+++++|...+++|++++++..++|-.
T Consensus 173 r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~------- 245 (317)
T TIGR01932 173 REILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEY------- 245 (317)
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 567888889999999999999999999999999999999999999999999999888876543332210
Q ss_pred HHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhhhhhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcc
Q psy9223 244 ALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEP 323 (457)
Q Consensus 244 ~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~ 323 (457)
T Consensus 246 -------------------------------------------------------------------------------- 245 (317)
T TIGR01932 246 -------------------------------------------------------------------------------- 245 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHH
Q psy9223 324 WGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLR 403 (457)
Q Consensus 324 ~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r 403 (457)
-..+..|+.++++.+++|||++++++..++| +.++ ++++.+++
T Consensus 246 ----------------------e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a---~~~~------------p~~~~~~~ 288 (317)
T TIGR01932 246 ----------------------EVRKILSEAYRTARIIKGEGDAEAAKIYSDA---YGKD------------PEFYSFWR 288 (317)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HccC------------HHHHHHHH
Confidence 0011222334455666677766666655554 3333 45667899
Q ss_pred HHHHHHHHHhCCCCEEEEeCcHHHHHHH
Q psy9223 404 YLQTLQSISQEKNSTIVFPIPLRYLQTL 431 (457)
Q Consensus 404 ~le~~~~i~~~~~~~~v~~~~~~~~~~~ 431 (457)
|||+|+++++++++++++|++++||++|
T Consensus 289 ~le~~~~~~~~~~~~~vl~~~~~~~~~~ 316 (317)
T TIGR01932 289 SLEAYEKSFKDNQDEKVLSTDSEFFQYM 316 (317)
T ss_pred HHHHHHHHhCCCCCEEEECCCcHHHHhh
Confidence 9999999999888899999999999876
No 4
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=6.7e-37 Score=288.21 Aligned_cols=201 Identities=57% Similarity=0.834 Sum_probs=194.1
Q ss_pred ecceeEEEEEEeceEeeCcccCCceeEEcCceeEE-EEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec--------
Q psy9223 67 VQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDY-AKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-------- 137 (457)
Q Consensus 67 V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-------- 137 (457)
|++||+||+++||++. ++++||+||++||++++ +.+|++.++++++.++++|+|+++|.+++++.|||.
T Consensus 1 V~~ge~~Vv~~~G~~~--~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~ 78 (215)
T cd03403 1 VPQYERGVVERLGKYH--RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYG 78 (215)
T ss_pred CCcceEEEEEEcCcCc--cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhc
Confidence 6899999999999998 67999999999999999 999999999999988999999999999999999996
Q ss_pred -----hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHH
Q psy9223 138 -----LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATR 212 (457)
Q Consensus 138 -----~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~ 212 (457)
..+.+.+++++|+++|++++++++++|+.+.+.+++.+++.+++|||+|++|.|+++++|+++.++|++++.|++
T Consensus 79 ~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~ 158 (215)
T cd03403 79 VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAER 158 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhcCCCeeEeccc
Q psy9223 213 EGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIP 269 (457)
Q Consensus 213 ~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~~~~~r~le~l~~~~~~~~~~iv~~~~ 269 (457)
+++|.+++|+|++++++..++|.+....||.++.+|++|+++..+++.++++++|++
T Consensus 159 ~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 215 (215)
T cd03403 159 EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKEAASTVVFPAP 215 (215)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccCCeEEeeCC
Confidence 999999999999999999999999998899999999999999999999999998764
No 5
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.5e-36 Score=307.04 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=177.6
Q ss_pred EEEEeeCCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEE
Q psy9223 55 RTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYY 134 (457)
Q Consensus 55 ~~~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~y 134 (457)
++++|+++|||+|+++|+|||++|||++ .+++|||||++||+++|..+|++.+.....++.++|+|++.|+|+++|+|
T Consensus 88 ~v~i~l~sg~yiV~e~E~gVV~rFGk~~--~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqY 165 (419)
T PRK10930 88 VVIIWAASGFYTIKEAERGVVTRFGKFS--HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQY 165 (419)
T ss_pred HHHHHHHheEEEECCCeEEEEEECCcCc--ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEE
Confidence 3456888999999999999999999997 79999999999999999999998877666678999999999999999999
Q ss_pred Eec-------------hhHHHHHHHHHHHHHccCcHHHHHhh-HHHHHHHHHHHHHhhcccc--CcEEEEEEeecCCCcH
Q psy9223 135 RRF-------------LRKRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQ 198 (457)
Q Consensus 135 rI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~-R~~i~~~i~~~l~~~l~~~--GI~i~~v~I~~i~~p~ 198 (457)
||. ..|.+.++++||+++|+++++++++. |+.|..++++.+++.++.| ||+|.+|.|++++||+
T Consensus 166 rI~Dp~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~ 245 (419)
T PRK10930 166 RVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPE 245 (419)
T ss_pred EECCHHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCH
Confidence 997 77889999999999999999999985 9999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-------------HHHHHH------HHHHhcChHHHHHH
Q psy9223 199 QLQRAMAAEAEATREGRAKVIAAEAEMKA-----------S-------------RALKEA------ADVIVESPAALQLR 248 (457)
Q Consensus 199 ~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~a-----------a-------------~~~aea------~~~~~~~~~~~~~r 248 (457)
++++||++.+.|++++++.+.+|++++.. . +++++| +..|.++|++++.|
T Consensus 246 eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~R 325 (419)
T PRK10930 246 EVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRER 325 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHH
Confidence 99999998887777665555555544322 1 111122 22367899999977
Q ss_pred -HHHHHHHhhhcCCCee
Q psy9223 249 -YLQTLNSISQEKNSTI 264 (457)
Q Consensus 249 -~le~l~~~~~~~~~~i 264 (457)
|||||++++.+.++++
T Consensus 326 lYletme~vl~~~~kvi 342 (419)
T PRK10930 326 LYIETMEKVLGHTRKVL 342 (419)
T ss_pred HHHHHHHHHHccCCEEE
Confidence 9999999998766544
No 6
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=2.6e-34 Score=278.43 Aligned_cols=163 Identities=23% Similarity=0.355 Sum_probs=147.6
Q ss_pred eeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec------
Q psy9223 64 QEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF------ 137 (457)
Q Consensus 64 ~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~------ 137 (457)
+|+|+|||+||+++||++. ++++||+||++||+++++.+|++.+....+...++|+|++.|+|+++++|||.
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~--~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~ 78 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYH--RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL 78 (261)
T ss_pred CEEeCCCeEEEEEEcCccc--cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH
Confidence 5899999999999999997 78999999999999999999997655333445699999999999999999997
Q ss_pred -------hhHHHHHHHHHHHHHccCcHHHHHh-hHHHHHHHHHHHHHhhcccc--CcEEEEEEeecCCCcHHHHHHHHHH
Q psy9223 138 -------LRKRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAE 207 (457)
Q Consensus 138 -------~~l~~~~~~alR~vi~~~~l~~l~~-~R~~i~~~i~~~l~~~l~~~--GI~i~~v~I~~i~~p~~v~~a~~~~ 207 (457)
..+.+.+++++|+++|+++++++++ +|++|.+.+.+.+++.++.| ||+|++|.|++++||+++.++|+++
T Consensus 79 ~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~ 158 (261)
T TIGR01933 79 FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDV 158 (261)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 6788999999999999999999999 79999999999999999976 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9223 208 AEATREGRAKVIAAEAEMKAS 228 (457)
Q Consensus 208 ~~Ae~~~~a~~~~Ae~e~~aa 228 (457)
+.|++++++.+.+|++++...
T Consensus 159 ~~a~q~~~~~~~~ae~~~~~~ 179 (261)
T TIGR01933 159 IIAREDEERYINEAEAYANEV 179 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998877777776665543
No 7
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.4e-34 Score=279.95 Aligned_cols=206 Identities=23% Similarity=0.336 Sum_probs=173.4
Q ss_pred ceeEEEEEEeceEeeCcccCCceeEEcCceeEE-EEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec----------
Q psy9223 69 EYERAVIFRLGRVREGGPRGPGLFFILPCIDDY-AKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF---------- 137 (457)
Q Consensus 69 ~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~---------- 137 (457)
+|+.|||++||+++ ++++|||||++||++++ ..+|++.++++++. +++|+|++.|+|+++++|||.
T Consensus 1 q~~~~Vv~rfGk~~--~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~ 77 (262)
T cd03407 1 QSQVAIIERFGKFF--KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFYK 77 (262)
T ss_pred CcEEEEEeecCccc--ccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHHH
Confidence 58999999999998 79999999999999998 58999999999885 689999999999999999999
Q ss_pred -----hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHH
Q psy9223 138 -----LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATR 212 (457)
Q Consensus 138 -----~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~ 212 (457)
..+.+.+++++|+++|++++++++++|+.|+..+.+.+++.++.|||.|++|.|++|+||+++.++|++++.|++
T Consensus 78 ~~~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~ 157 (262)
T cd03407 78 LGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQR 157 (262)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHH----HHHHH-----------H------hcChHHH----HHHHHHHHHHh
Q psy9223 213 EGRAKVIAAEAEMKA-----------SRALK----EAADV-----------I------VESPAAL----QLRYLQTLNSI 256 (457)
Q Consensus 213 ~~~a~~~~Ae~e~~a-----------a~~~a----ea~~~-----------~------~~~~~~~----~~r~le~l~~~ 256 (457)
++++.+.+|++++.+ +...+ ++..+ + ..+|.+. ..+|+|+++++
T Consensus 158 ~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~ 237 (262)
T cd03407 158 QRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAY 237 (262)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 888666666655432 21111 11111 1 1124433 34699999999
Q ss_pred hhcCCCeeEeccchhhhhhhh
Q psy9223 257 SQEKNSTIIFPIPVDIISTFM 277 (457)
Q Consensus 257 ~~~~~~~iv~~~~~~~~~~~~ 277 (457)
+.++|+++++|.+...+..++
T Consensus 238 ~~~~~kviv~p~~~~~~~~~~ 258 (262)
T cd03407 238 GRSSSTVVFRPHGPGGAQDIY 258 (262)
T ss_pred HhCCCCEEEecCCCccHHHHH
Confidence 999888899987766555543
No 8
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1e-33 Score=271.27 Aligned_cols=170 Identities=33% Similarity=0.471 Sum_probs=158.4
Q ss_pred eeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec------
Q psy9223 64 QEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF------ 137 (457)
Q Consensus 64 ~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~------ 137 (457)
||+|++||+||+++||++.+ .+++||+||++||+++++.+|++.++++.++++++|+|++.|++++++.|||.
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~-~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~ 79 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVR-VVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFY 79 (242)
T ss_pred CEEeCCCeEEEEEEcCcccc-ccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHH
Confidence 58999999999999999972 37899999999999999999999999998889999999999999999999999
Q ss_pred -----------hhHHHHHHHHHHHHHccCcHHHHHhh-HHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHH
Q psy9223 138 -----------LRKRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMA 205 (457)
Q Consensus 138 -----------~~l~~~~~~alR~vi~~~~l~~l~~~-R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~ 205 (457)
..+.+.+++++|+++|++++++++++ |+++.+.+++.+++.+++|||+|.+|.|++|+||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~ 159 (242)
T cd03405 80 QAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVY 159 (242)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHH
Confidence 24677889999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 206 AEAEATREGRAKVIAAEAEMKASRALKEA 234 (457)
Q Consensus 206 ~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea 234 (457)
++++|++++++...+|+|++++.+..+++
T Consensus 160 ~~~~ae~~~~a~~~~ae~~~~a~~~~aea 188 (242)
T cd03405 160 RRMRAERERIAAEFRAEGEEEAERIRADA 188 (242)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999998887655444
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=6.8e-33 Score=269.26 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=145.5
Q ss_pred EEeeCCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEE-EeeeEE------------EeecCCCccccCCC
Q psy9223 57 VSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAK-VDLRTV------------SFDVPPQEVMSKDS 123 (457)
Q Consensus 57 ~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~-v~~r~~------------~~~~~~~~v~T~D~ 123 (457)
++|+++|+++|++||+|||++||+++ ++++||+||+|||++++.. +|++.+ ....+...++|+|+
T Consensus 8 ~~~~~~s~~~V~~ge~gVV~~fGk~~--~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~ 85 (266)
T cd03404 8 ILWLLSGFYIVQPGERGVVLRFGKYS--RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDE 85 (266)
T ss_pred HHHHHcEEEEECCCceEEeEEcCccc--cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCC
Confidence 55678899999999999999999998 7999999999999998754 444321 11223457999999
Q ss_pred cEEEEeEEEEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhh-HHHHHHHHHHHHHhhcccc--CcEEE
Q psy9223 124 VTLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPW--GVKVE 187 (457)
Q Consensus 124 ~~v~v~~~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~-R~~i~~~i~~~l~~~l~~~--GI~i~ 187 (457)
+.|++++++.|||. ..+.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||+|.
T Consensus 86 ~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~ 165 (266)
T cd03404 86 NIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIV 165 (266)
T ss_pred CEEEEEEEEEEEECCHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 99999999999999 67889999999999999999999997 9999999999999999876 99999
Q ss_pred EEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 188 RVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMK 226 (457)
Q Consensus 188 ~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~ 226 (457)
+|.|++++||+++.++|+++..|++++++.+.+|+++++
T Consensus 166 ~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~ 204 (266)
T cd03404 166 GVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYAN 204 (266)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888877766666655543
No 10
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6.2e-31 Score=253.47 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=154.0
Q ss_pred CCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE-EEEEec--
Q psy9223 61 VPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV-VYYRRF-- 137 (457)
Q Consensus 61 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~-v~yrI~-- 137 (457)
++|+++|++||+||+++||++.+ .+++|||||++||+++|..+|++.++.+.+...+.|+||..|++|.. +.|++.
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~-~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~ 80 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLT-STSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD 80 (280)
T ss_pred CceEEEECCCeEEEEEECCcccc-cccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence 57899999999999999999863 58899999999999999999999999988778899999999999964 556655
Q ss_pred ---------------hhHHHHHHHHHHHHHccCcHHHHHh-hHHHHHHHHHHHHHhhcccc--CcEEEEEEeecCCCcHH
Q psy9223 138 ---------------LRKRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQ 199 (457)
Q Consensus 138 ---------------~~l~~~~~~alR~vi~~~~l~~l~~-~R~~i~~~i~~~l~~~l~~~--GI~i~~v~I~~i~~p~~ 199 (457)
..+.+.+++++|+++|+++++++++ +|+.+...+++.+++.++.| ||+|.+|.|++++||++
T Consensus 81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~ 160 (280)
T cd03406 81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA 160 (280)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence 4567778999999999999999998 69999999999999999987 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q psy9223 200 LQRAMAAEAEATREGR--------AKVIAAEAEMKASRALKE 233 (457)
Q Consensus 200 v~~a~~~~~~Ae~~~~--------a~~~~Ae~e~~aa~~~ae 233 (457)
+.++| ++|.|||++. |...+|||++.++...|+
T Consensus 161 V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~ 201 (280)
T cd03406 161 IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAE 201 (280)
T ss_pred HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHH
Confidence 99997 7999999999 999999999877644444
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.97 E-value=1.1e-30 Score=242.39 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=151.2
Q ss_pred ceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-----
Q psy9223 63 PQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF----- 137 (457)
Q Consensus 63 ~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~----- 137 (457)
|+++|++|++||+++||+++...+++||+||++||++++..+|++.+++++. ..+.|+|++.|++++++.|++.
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~-~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIE-STTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEe-ecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 5899999999999999998743489999999999999999999999998875 5788999999999999999986
Q ss_pred ------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHH
Q psy9223 138 ------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMA 205 (457)
Q Consensus 138 ------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~ 205 (457)
..+.+.+++++|+++|++++++++++|+.+...+++.+++.+++|||+|.+|.|++|+||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 24667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy9223 206 AEAEATREGRA---KVIAAEAEMKASRALKEA 234 (457)
Q Consensus 206 ~~~~Ae~~~~a---~~~~Ae~e~~aa~~~aea 234 (457)
+++.|++++++ .+.+|++|+++....|++
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888887554 355566666665444443
No 12
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=4.7e-31 Score=247.39 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=152.6
Q ss_pred ceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-----
Q psy9223 63 PQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF----- 137 (457)
Q Consensus 63 ~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~----- 137 (457)
|+|+|+|||+||+++||||.+ .+.+|||||++||++. .++|+|.++++.+++.++|+|+++++|+++++|||.
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~-t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka 78 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIG-TIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKA 78 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcc-cccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHH
Confidence 689999999999999999983 2459999999999865 789999999999999999999999999999999997
Q ss_pred --------hhHHHHHHHHHHHHHccCcHHHHHh-------hHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHH
Q psy9223 138 --------LRKRLLAATTLRNVLGTRNLAEILS-------ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQR 202 (457)
Q Consensus 138 --------~~l~~~~~~alR~vi~~~~l~~l~~-------~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~ 202 (457)
..+...+++++|+++|+++++++++ +|+++..++++.+++.++.|||+|.+|.|+++.||+++.+
T Consensus 79 ~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~ 158 (219)
T cd03402 79 VFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQ 158 (219)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHH
Confidence 6788899999999999999999985 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 203 AMAAEAEATREGRAKVIAAEAEMKA 227 (457)
Q Consensus 203 a~~~~~~Ae~~~~a~~~~Ae~e~~a 227 (457)
+|.++++|+++.+|+...++|+..-
T Consensus 159 am~~R~~Ae~~~~Ar~~~~~Ga~~~ 183 (219)
T cd03402 159 AMLQRQQASAIIAARRKIVEGAVGM 183 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchH
Confidence 9999999999999999999988644
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=255.42 Aligned_cols=211 Identities=42% Similarity=0.676 Sum_probs=182.1
Q ss_pred EEeeCCceeeecceeEEEEEEeceEeeCcccC-CceeEEcCc---eeEE-EEEeeeEEEeec-CCCccccCCCcEEEEeE
Q psy9223 57 VSFDVPPQEIVQEYERAVIFRLGRVREGGPRG-PGLFFILPC---IDDY-AKVDLRTVSFDV-PPQEVMSKDSVTLHVDA 130 (457)
Q Consensus 57 ~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~-pGl~~~~P~---i~~v-~~v~~r~~~~~~-~~~~v~T~D~~~v~v~~ 130 (457)
++++++++++|++++++++++||++. ++.+ ||+||++|| ++.+ .+++.+.++++. +++.++|+|++.|+||+
T Consensus 14 ~~~~~~~~~~v~~~~~~vv~r~G~~~--~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~ 91 (291)
T COG0330 14 IVLLFSSIFVVKEGERGVVLRFGRYT--RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDA 91 (291)
T ss_pred HHHHHceeEEEcCCceEEEEEeccee--eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEE
Confidence 55778899999999999999999998 6788 999999999 4444 788999999999 79999999999999999
Q ss_pred EEEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhhHH-HHHHHHHHHHHhhccccCcEEEEEEeecCCC
Q psy9223 131 VVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSERE-SISHAMQANLDHATEPWGVKVERVEIKDVRL 196 (457)
Q Consensus 131 ~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~R~-~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~ 196 (457)
+++|||. ..+.+.+++++|+++|++++++++++|. .++..+.+.+++.+++|||.|.+|+|++++|
T Consensus 92 ~v~~rv~d~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~ 171 (291)
T COG0330 92 VVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDP 171 (291)
T ss_pred EEEEEEcCHHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCC
Confidence 9999999 7788999999999999999999999988 9999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH--------------HHHhc-------ChHH
Q psy9223 197 PQQLQRAMAAEAEATREGRAKVIAAEAEMK-----------ASRALKEAA--------------DVIVE-------SPAA 244 (457)
Q Consensus 197 p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~-----------aa~~~aea~--------------~~~~~-------~~~~ 244 (457)
|+++..+|.+++.||+++++.+.+|+++++ +++..+||. +.+.. .+.+
T Consensus 172 p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0330 172 PEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQA 251 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccccchhHH
Confidence 999999999999999999999988888544 333333332 33322 2567
Q ss_pred HHHHHHHHHHHhhhcCCCee-Eeccc
Q psy9223 245 LQLRYLQTLNSISQEKNSTI-IFPIP 269 (457)
Q Consensus 245 ~~~r~le~l~~~~~~~~~~i-v~~~~ 269 (457)
+.+||++.+.+...++++++ +.|.+
T Consensus 252 ~~~r~~~~~~~~~~~~~~~~v~~p~~ 277 (291)
T COG0330 252 LAQRYLEELLEIALAGNSKVVVVPNS 277 (291)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 88999999999887755544 55444
No 14
>KOG2620|consensus
Probab=99.97 E-value=4.7e-33 Score=254.36 Aligned_cols=202 Identities=33% Similarity=0.533 Sum_probs=172.7
Q ss_pred eeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEE-EEeeeEEEeecCCCccccCCCcEEEEeEEEEEEechhHHHH
Q psy9223 65 EIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYA-KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLL 143 (457)
Q Consensus 65 ~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~-~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~l~~~ 143 (457)
..||+.+++|+.|||||. +++.||+||..|+++++. ..+++......+.++..|+||+.++++++++|||.
T Consensus 10 ~~VpQ~~a~VvER~GkF~--~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~------ 81 (301)
T KOG2620|consen 10 RFVPQQEAAVVERFGKFH--RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVV------ 81 (301)
T ss_pred EeechhHhHHHHHhhhhh--hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEe------
Confidence 359999999999999998 899999999999999884 44555555566779999999999999999999972
Q ss_pred HHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhc--cccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 144 AATTLRNVLGTRNLAEILSERESISHAMQANLDHAT--EPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAA 221 (457)
Q Consensus 144 ~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l--~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~A 221 (457)
++.. +.||++
T Consensus 82 --------------------------------dp~~~dAsYgve------------------------------------ 93 (301)
T KOG2620|consen 82 --------------------------------DPYADDASYGVE------------------------------------ 93 (301)
T ss_pred --------------------------------cccccccccccC------------------------------------
Confidence 1111 123321
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhhhhhhhHhhhhhcccccCcccHHH
Q psy9223 222 EAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAE 301 (457)
Q Consensus 222 e~e~~aa~~~aea~~~~~~~~~~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~R~~v~~~~l~~ 301 (457)
||. ..+++++++.||+.+|+++||.
T Consensus 94 -------------------np~------------------------------------~aI~qlaqttmRsevgkltLD~ 118 (301)
T KOG2620|consen 94 -------------------NPE------------------------------------YAIQQLAQTTMRSEVGKLTLDK 118 (301)
T ss_pred -------------------CHH------------------------------------HHHHHHHHHHHHHhcccccHHH
Confidence 221 2355678889999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy9223 302 ILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKAS--RALKEAADV 379 (457)
Q Consensus 302 vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa--~~~~~a~~~ 379 (457)
+|.+|+.|+..|.+.+++.++.||++|.+.+|+||.||+.|+.||+.++.|||.++|.+.++||+++++ ++++++...
T Consensus 119 vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~ 198 (301)
T KOG2620|consen 119 VFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESK 198 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 666666667
Q ss_pred HhcCHHHHHHHHHHhhhh
Q psy9223 380 IVESPAALQKRLQKIQTN 397 (457)
Q Consensus 380 ~~~~~a~~~~~~~~a~~~ 397 (457)
+..+++.+++++|.++|+
T Consensus 199 iL~seg~~~qr~n~a~Ge 216 (301)
T KOG2620|consen 199 ILASEGIARQRQNIADGE 216 (301)
T ss_pred HhhhHHHHHHHHHHHhhH
Confidence 888999999999888764
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.94 E-value=3.1e-26 Score=205.02 Aligned_cols=144 Identities=50% Similarity=0.800 Sum_probs=137.3
Q ss_pred CceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec----
Q psy9223 62 PPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF---- 137 (457)
Q Consensus 62 ~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~---- 137 (457)
+|+++|++||+||+++||++. ++++||+||++||++++..+|++.++++.+...+.|+|++++++++++.|||.
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~--~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~ 78 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVL--RVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLK 78 (160)
T ss_pred CcEEEEcccEEEEEEecCccc--cccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHH
Confidence 478999999999999999998 58999999999999999999999999998888999999999999999999988
Q ss_pred ----------hhHHHHHHHHHHHHHccCcHHHHHh-hHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHH
Q psy9223 138 ----------LRKRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAA 206 (457)
Q Consensus 138 ----------~~l~~~~~~alR~vi~~~~l~~l~~-~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~ 206 (457)
..+.+.+++++|+++++++++++++ +|+++.+.+++.+++.+++||++|.++.|+++++|+++.+++++
T Consensus 79 ~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~ 158 (160)
T smart00244 79 AVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQ 158 (160)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHh
Confidence 3688999999999999999999999 69999999999999999999999999999999999999999987
Q ss_pred H
Q psy9223 207 E 207 (457)
Q Consensus 207 ~ 207 (457)
+
T Consensus 159 k 159 (160)
T smart00244 159 Q 159 (160)
T ss_pred h
Confidence 5
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.94 E-value=1.9e-26 Score=210.25 Aligned_cols=159 Identities=32% Similarity=0.506 Sum_probs=114.2
Q ss_pred eeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCC--CccccCCCcEEEEeEEEEEEec-----
Q psy9223 65 EIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPP--QEVMSKDSVTLHVDAVVYYRRF----- 137 (457)
Q Consensus 65 ~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~--~~v~T~D~~~v~v~~~v~yrI~----- 137 (457)
|+|++||+||++++|++. .+++||+||++||+++++.+|++.++++++. ..+.|+|+..+++++++.|+|.
T Consensus 1 ~~V~~g~~~V~~~~G~~~--~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~ 78 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVK--DVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKF 78 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCC
T ss_pred CEeCCCEEEEEEECCeEe--EEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHH
Confidence 589999999999999998 6899999999999999999999999999987 7999999999999999999996
Q ss_pred ------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHH
Q psy9223 138 ------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMA 205 (457)
Q Consensus 138 ------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~ 205 (457)
..++..+++++|++++++++++++++|..+.+.+.+.+++.+..|||+|.+|.|+++.+|+++.+++.
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~ 158 (179)
T PF01145_consen 79 VQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIE 158 (179)
T ss_dssp CCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHH
T ss_pred HHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHH
Q psy9223 206 AEAEATREG-RAKVIAAEAEM 225 (457)
Q Consensus 206 ~~~~Ae~~~-~a~~~~Ae~e~ 225 (457)
+++.|++++ ++...+|++|+
T Consensus 159 ~~~~a~~~~~~~~~~~a~~ea 179 (179)
T PF01145_consen 159 EKQRAEQEAQQAEIERAEAEA 179 (179)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 999999999 78888888775
No 17
>KOG3090|consensus
Probab=99.91 E-value=4e-24 Score=191.31 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=182.8
Q ss_pred EEeeCCceeeecceeEEEEEE-eceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEE
Q psy9223 57 VSFDVPPQEIVQEYERAVIFR-LGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR 135 (457)
Q Consensus 57 ~~~~~~~~~~V~~ge~~Vv~~-~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yr 135 (457)
+..+..|+|.|+-||+++++. +|.+. +++...|.||.+||+++...+|+|-+...+. ...-|+|-+.|++...|.-|
T Consensus 31 ~y~v~~sl~nVdgGHRAI~fnRi~Gik-~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~-S~tGskDLQmVnI~lRVLsR 108 (290)
T KOG3090|consen 31 AYGVTQSLYNVDGGHRAIVFNRIGGIK-DDIYPEGTHFRIPWFERPIIYDVRARPRLIS-SPTGSKDLQMVNIGLRVLSR 108 (290)
T ss_pred hheecceeEeecCCceEEEEeccccch-hccccCCceEeeeccccceeeeeccCccccc-CCCCCcceeEEEeeeEEecC
Confidence 345678999999999999995 67776 4799999999999999999999998887776 56778999999999999888
Q ss_pred ec-----------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcH
Q psy9223 136 RF-----------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQ 198 (457)
Q Consensus 136 I~-----------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~ 198 (457)
.. ..+-+++...|+.++++++..++++.|+.++..|++.|.++..++.|-+++|.|+++++.+
T Consensus 109 P~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~ 188 (290)
T KOG3090|consen 109 PMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGK 188 (290)
T ss_pred CChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCH
Confidence 87 5566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh---hcCC
Q psy9223 199 QLQRAMAAEAEATR--------------EGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSIS---QEKN 261 (457)
Q Consensus 199 ~v~~a~~~~~~Ae~--------------~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~~~~~r~le~l~~~~---~~~~ 261 (457)
++..+++.++.|++ +++..+.+|+||+++|+...+| ++.||..+.||.+|+-++++ .+++
T Consensus 189 efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA---i~nn~~fi~Lrki~aAr~IA~tia~S~ 265 (290)
T KOG3090|consen 189 EFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA---IKNNPAFITLRKIEAAREIAQTIASSA 265 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH---HhCCccceeehhHHHHHHHHHHHhcCC
Confidence 99999998775555 4556788888888888888877 67799999999999999887 4577
Q ss_pred CeeEeccch
Q psy9223 262 STIIFPIPV 270 (457)
Q Consensus 262 ~~iv~~~~~ 270 (457)
++++++.+.
T Consensus 266 NkvyL~~~~ 274 (290)
T KOG3090|consen 266 NKVYLSSDD 274 (290)
T ss_pred CeEEecccc
Confidence 788885543
No 18
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.87 E-value=2.6e-21 Score=187.34 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=101.3
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAK 359 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~ 359 (457)
..+...+++++|+++|++++++++++|+.|+..|.+.+++.+++|||+|++|.|+|++||+++++||++++.|+|+++|.
T Consensus 83 ~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~ 162 (262)
T cd03407 83 EQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAA 162 (262)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHhhh
Q psy9223 360 VIAAEAEMKAS--RALKEAADVIVESPAALQKRLQKIQT 396 (457)
Q Consensus 360 ~~~Aeg~~~aa--~~~~~a~~~~~~~~a~~~~~~~~a~~ 396 (457)
+.+|||++++. +|+++|++.+.+|++++......|.+
T Consensus 163 ~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g 201 (262)
T cd03407 163 VHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADG 201 (262)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999988664 55555555555566655555555544
No 19
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.85 E-value=2.6e-20 Score=189.04 Aligned_cols=141 Identities=21% Similarity=0.339 Sum_probs=126.2
Q ss_pred hhhhHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhccc--CceEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREG 356 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~ 356 (457)
..+.+.+++++|++||+++++++|+ +|++|+.++++.+++.+++| ||+|++|+|+|++||++|++||++++.|++++
T Consensus 182 ~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~ 261 (419)
T PRK10930 182 DSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENE 261 (419)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998 79999999999999999987 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHhhhh----------------HHHHHHHHHHHHHHHhCCCCE
Q psy9223 357 RAKVIAAEAEMKAS--RALKEAADVIVESPAALQKRLQKIQTN----------------YLFQLRYLQTLQSISQEKNST 418 (457)
Q Consensus 357 ~a~~~~Aeg~~~aa--~~~~~a~~~~~~~~a~~~~~~~~a~~~----------------~~~~~r~le~~~~i~~~~~~~ 418 (457)
++.+.+||+++++. +|+++|++++.+|+||+++.+.+|.++ ++..-.|||+|+++..+.+ +
T Consensus 262 ~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlYletme~vl~~~~-k 340 (419)
T PRK10930 262 QQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGHTR-K 340 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHccCC-E
Confidence 99999999999886 899999999999999999999888443 3333459999999999754 3
Q ss_pred EEE
Q psy9223 419 IVF 421 (457)
Q Consensus 419 ~v~ 421 (457)
+++
T Consensus 341 viv 343 (419)
T PRK10930 341 VLV 343 (419)
T ss_pred EEE
Confidence 444
No 20
>KOG2668|consensus
Probab=99.84 E-value=7.6e-19 Score=166.93 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=210.6
Q ss_pred eeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec------
Q psy9223 64 QEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF------ 137 (457)
Q Consensus 64 ~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~------ 137 (457)
|++..+++..++..+|.-. .+....|| .||| +++.++|+...++.+..+.+.|+.|+++.|.++.+..|.
T Consensus 2 f~~~~~~~~l~itg~g~~~-~~lv~~~w--vf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIED-IKLVKKSW--VFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccC-ceecccce--eeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4567788888888888643 23334444 5577 999999999999999988899999999999999999998
Q ss_pred ------------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcH-
Q psy9223 138 ------------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQ- 198 (457)
Q Consensus 138 ------------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~- 198 (457)
..+...+++..|.++|++|+++++.+|.++...+.+..+..+.++||.|.+.+|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 3445567788999999999999999999999999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcChHHHHHHHHHHHHHhhh-cCCCeeEeccch
Q psy9223 199 -QLQRAMAAEAEATREGRAKVIAAEAEMKASRA------LKEAADVIVESPAALQLRYLQTLNSISQ-EKNSTIIFPIPV 270 (457)
Q Consensus 199 -~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~------~aea~~~~~~~~~~~~~r~le~l~~~~~-~~~~~iv~~~~~ 270 (457)
+|..++.+..+|+..++|++-.||+++++=.. +..++++.+++...-..|-.|-.+.... .-|+. -..+
T Consensus 158 ~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~---~aEA 234 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTN---KAEA 234 (428)
T ss_pred hHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhh---HHHH
Confidence 79999999999999999999999999887333 3345666666655544453322221110 00110 1345
Q ss_pred hhhhhhhhhhhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHH
Q psy9223 271 DIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 350 (457)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~ 350 (457)
++.+.+.....-+.+-...++-.+-.++-.-.+. -.+|....++.-...-.+ -+-+.. +--.+-+....-.....
T Consensus 235 ~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~-eqEiqr~~~el~A~vR~p--aeAe~~--r~~klaEAnk~~~~~qa 309 (428)
T KOG2668|consen 235 DLAYELQAAKTKQAIREEEIQVAVVERTKQVAVR-EQEIQRRVEELNATVRTP--AEAEVE--RETKLAEANKELYNKQA 309 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCh--hHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5555554443333344444333222222111111 112222222111100000 000000 00111222333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q psy9223 351 EATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQ 413 (457)
Q Consensus 351 ~Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~i~~ 413 (457)
+||.+.-+++-+||+.+.+|.+.++|.++-.++++|..-. ++. ..-.-|+++..++.
T Consensus 310 qAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~----~aa--~l~~lLealp~Ia~ 366 (428)
T KOG2668|consen 310 QAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYA----QAA--YLRTLLEALPMIAA 366 (428)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhh----hhH--HHHHHHHHHHHHHH
Confidence 5666666666666666666777777777777777664211 111 11124677877764
No 21
>KOG2621|consensus
Probab=99.84 E-value=8.2e-21 Score=176.55 Aligned_cols=144 Identities=75% Similarity=0.972 Sum_probs=137.8
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAK 359 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~ 359 (457)
.+++.+.++.+|+++|+++|.|++++|+.|+.+++..+++....|||+|++|+|+||.+|.+.+.+|....+|-|++.|+
T Consensus 142 ~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Ak 221 (288)
T KOG2621|consen 142 NATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAK 221 (288)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhh
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHhhhc
Q psy9223 360 VIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQ 436 (457)
Q Consensus 360 ~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~ 436 (457)
++.||||..+.++.++|+..+++++.+. ++|||+++..++...++++++|.|.+.+..+.+...
T Consensus 222 viaaege~~as~al~~aa~v~~~sp~al-------------qLryLqtl~sia~e~~~tivfP~p~e~l~~~~~~~~ 285 (288)
T KOG2621|consen 222 VIAAEGEKKASEALKEAADVISESPIAL-------------QLRYLQTLNSIAAEKNSTIVFPLPIDLLTALMSKKS 285 (288)
T ss_pred HHHHHhhhHHHHHHHHhhccccCCchhh-------------hhhhhhcchhhhcCCCCCcccCCCHHHHHHhhcccc
Confidence 9999999999999999999999999986 899999999999999999999999888887766544
No 22
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.79 E-value=2.5e-18 Score=161.84 Aligned_cols=129 Identities=57% Similarity=0.780 Sum_probs=120.0
Q ss_pred hhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVI 361 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~ 361 (457)
+..++++++|+++|++++++++++|+.|++.|++.+++.+++|||+|+++.|++++||++++++|+++++|+|+++|.+.
T Consensus 86 l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~ 165 (215)
T cd03403 86 ISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKII 165 (215)
T ss_pred HHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCEEEEeC
Q psy9223 362 AAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPI 423 (457)
Q Consensus 362 ~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~i~~~~~~~~v~~~ 423 (457)
+|||++++++.+++|.+.....+.+. .++++|+++.++++.++++++++
T Consensus 166 ~A~ge~~a~~~~aea~~~~~~~~~~~-------------~~~~~e~~~~~~~~~~~~~~~~~ 214 (215)
T cd03403 166 EAEGERQAAILLAEAAKQAAINPAAL-------------QLRELETLEEIAKEAASTVVFPA 214 (215)
T ss_pred HhHHHHHHHHHHHHHHHHHccCHHHH-------------HHHHHHHHHHHHhccCCeEEeeC
Confidence 99999999999999987776666654 79999999999999999999854
No 23
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.78 E-value=3e-18 Score=169.55 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=125.4
Q ss_pred hhHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHh---------------------------------------h
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHA---------------------------------------T 321 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~---------------------------------------~ 321 (457)
+.+.+++++|+++|+++++++++ +|++|+..+++.+++. +
T Consensus 119 l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (334)
T PRK11029 119 LKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSM 198 (334)
T ss_pred HHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhccccccccccccccccc
Confidence 44568899999999999999998 7999999999999864 4
Q ss_pred cccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHhhhh
Q psy9223 322 EPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASR----ALKEAADVIVESPAALQKRLQKIQTN 397 (457)
Q Consensus 322 ~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa~----~~~~a~~~~~~~~a~~~~~~~~a~~~ 397 (457)
.+|||+|++|+|+|++||+++++||+++|+|||+++|.+++|||++.+.+ +++++.+++ ++|+++..+.+|.++
T Consensus 199 ~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~--AeA~~~a~i~~aege 276 (334)
T PRK11029 199 AALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTL--AEAERQGRIMRGEGD 276 (334)
T ss_pred ccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhhhH
Confidence 78999999999999999999999999999999999999999999998863 344444444 567777777777776
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHhh---hcCCCcceeccCCCcchhhh
Q psy9223 398 YLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSI---SQEKNSTIIFPIPVDIISTF 454 (457)
Q Consensus 398 ~~~~~r~le~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 454 (457)
.-.+-.+.+++.+ + |..+.|+.+|..| ..++++++++|++++++.+|
T Consensus 277 A~a~~~~~~a~~~---~-------p~~~~~~~~lea~~~~~~~~~~~~vl~~~~~~~~~l 326 (334)
T PRK11029 277 AEAAKLFADAFSQ---D-------PDFYAFIRSLRAYENSFSGNQDVMVLSPDSDFFRYM 326 (334)
T ss_pred HHHHHHHHHHHhc---C-------HHHHHHHHHHHHHHHHhcCCCcEEEECCChHHHHHh
Confidence 5555556666641 1 2234555555555 34455567899998777655
No 24
>KOG3083|consensus
Probab=99.78 E-value=7.3e-19 Score=157.65 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=167.8
Q ss_pred EeeCCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec
Q psy9223 58 SFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF 137 (457)
Q Consensus 58 ~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~ 137 (457)
..+.+++|.|+-|+++|++..=..+.+.+.+.|-||.|||.++...+|.|.+...++ ...-|+|-+.|++...+.||-.
T Consensus 21 ~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~-~itGskdLQ~VniTlril~rp~ 99 (271)
T KOG3083|consen 21 GVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVP-VITGSKDLQNVNITLRILFRPV 99 (271)
T ss_pred hhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccc-cccCchhhhcccceEEEEeccc
Confidence 356789999999999999953222335789999999999999999999999887766 4456899999999999999986
Q ss_pred -----------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHH
Q psy9223 138 -----------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQL 200 (457)
Q Consensus 138 -----------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v 200 (457)
..+-.+....|++++++++..++++.|+.++..+.+.+.++...+|+.+++|.|++.++-.++
T Consensus 100 ~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEF 179 (271)
T KOG3083|consen 100 VSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEF 179 (271)
T ss_pred ccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHH
Confidence 345556778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHhc-----ChHHHHHHHHHHHHHhh---hcCCCeeE
Q psy9223 201 QRAMAAEAEATREGRAKV---IAAEAEMKA----SRALKEAADVIVE-----SPAALQLRYLQTLNSIS---QEKNSTII 265 (457)
Q Consensus 201 ~~a~~~~~~Ae~~~~a~~---~~Ae~e~~a----a~~~aea~~~~~~-----~~~~~~~r~le~l~~~~---~~~~~~iv 265 (457)
.+|++.++.|++|++... ..|+.++.+ |+.+++|++++.+ ..-++.+|-+|+-++++ ..+.++.+
T Consensus 180 t~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~Ls~s~nv~Y 259 (271)
T KOG3083|consen 180 TEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQLSRSRNVTY 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHHHhcCCCcee
Confidence 999998887777655432 334444433 2444444444433 24567788899988887 34566677
Q ss_pred eccc
Q psy9223 266 FPIP 269 (457)
Q Consensus 266 ~~~~ 269 (457)
+|..
T Consensus 260 Lp~g 263 (271)
T KOG3083|consen 260 LPAG 263 (271)
T ss_pred ccCC
Confidence 7643
No 25
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.9e-18 Score=166.16 Aligned_cols=142 Identities=36% Similarity=0.552 Sum_probs=126.6
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHH-HHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERE-SISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRA 358 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~-~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a 358 (457)
..+.+++++.+|+++|++++++++++|+ .|+..+.+.+++.+++|||+|++|+|++++||++++.||+++|.|||++++
T Consensus 112 ~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra 191 (291)
T COG0330 112 AALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRA 191 (291)
T ss_pred HHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677799999999999999999999777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhcCHHHH----------HHHHHHhh-----hhHHHHHHHHHHHHHHHhCCCCEE
Q psy9223 359 KVIAAEAEMKAS----RALKEAADVIVESPAAL----------QKRLQKIQ-----TNYLFQLRYLQTLQSISQEKNSTI 419 (457)
Q Consensus 359 ~~~~Aeg~~~aa----~~~~~a~~~~~~~~a~~----------~~~~~~a~-----~~~~~~~r~le~~~~i~~~~~~~~ 419 (457)
.+.+|||+++++ +++++|+.+++++.+++ .++++++. .+++..+||++++.+++.++++++
T Consensus 192 ~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 271 (291)
T COG0330 192 EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKV 271 (291)
T ss_pred HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccccchhHHHHHHHHHHHHHHhhCCCCeE
Confidence 999999998875 58888888888888776 46666552 258899999999999999876666
Q ss_pred EE
Q psy9223 420 VF 421 (457)
Q Consensus 420 v~ 421 (457)
++
T Consensus 272 v~ 273 (291)
T COG0330 272 VV 273 (291)
T ss_pred EE
Confidence 66
No 26
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.77 E-value=6.9e-18 Score=157.80 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=126.0
Q ss_pred eeCCceeeecceeEEEEEEeceEeeCcccCCceeEEc----Cce---------------eEEEEEeeeEEEeecC--C--
Q psy9223 59 FDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFIL----PCI---------------DDYAKVDLRTVSFDVP--P-- 115 (457)
Q Consensus 59 ~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~----P~i---------------~~v~~v~~r~~~~~~~--~-- 115 (457)
+...|.++|++||.||++++|++. ++++||.|+.+ |++ ..|..+|.+.+..... +
T Consensus 11 i~~~s~~iV~e~~~av~~~~Gk~~--~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 88 (207)
T cd03408 11 IKNGSQLIVREGQAAVFVNEGKVA--DVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAP 88 (207)
T ss_pred cccCCEEEEcCCcEEEEEECCEEE--EEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCC
Confidence 345689999999999999999998 67888777655 443 3477888888775321 1
Q ss_pred --CccccCCCcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHH
Q psy9223 116 --QEVMSKDSVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLGTRNLAEILSE--RESISH 169 (457)
Q Consensus 116 --~~v~T~D~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~ 169 (457)
....|.|+++|.+++++.|||. ..+.+.+++++|+++|++++++++.+ |+++++
T Consensus 89 ~~~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~ 168 (207)
T cd03408 89 VFGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSK 168 (207)
T ss_pred eeeeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHH
Confidence 2346788899999999999997 25778899999999999999999987 999999
Q ss_pred HHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHH
Q psy9223 170 AMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 207 (457)
Q Consensus 170 ~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~ 207 (457)
.+++.+++.++.||++|.+|.|++|++|++++++|.++
T Consensus 169 ~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 169 AVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 99999999999999999999999999999999998864
No 27
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.76 E-value=1.2e-17 Score=161.88 Aligned_cols=150 Identities=20% Similarity=0.302 Sum_probs=121.8
Q ss_pred hhhhHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhccc--CceEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREG 356 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~ 356 (457)
..+...+++++|+++|+++++++++ +|++|+.+|.+.+++.++.| ||+|++|+|++++||+++++||++++.|++++
T Consensus 86 ~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~ 165 (261)
T TIGR01933 86 DSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDE 165 (261)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999 99999999999999999866 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHH-------------HHh---hhhHHHHHHHHHHHHHHHhCCCCE
Q psy9223 357 RAKVIAAEAEMKAS--RALKEAADVIVESPAALQKRL-------------QKI---QTNYLFQLRYLQTLQSISQEKNST 418 (457)
Q Consensus 357 ~a~~~~Aeg~~~aa--~~~~~a~~~~~~~~a~~~~~~-------------~~a---~~~~~~~~r~le~~~~i~~~~~~~ 418 (457)
++.+.+||++++.. +++++|++.+.+|+|++...+ ..| +++++.+++|+|+|++..+++++.
T Consensus 166 ~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~~~~~~~~~~~~ 245 (261)
T TIGR01933 166 ERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLETMEKVLSNTRKV 245 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHccCCeE
Confidence 99888888887762 444444444444444444333 333 567889999999999999877777
Q ss_pred EEEeCcHHHHH
Q psy9223 419 IVFPIPLRYLQ 429 (457)
Q Consensus 419 ~v~~~~~~~~~ 429 (457)
++++++++++.
T Consensus 246 ~~~~~~~~~~~ 256 (261)
T TIGR01933 246 LLDDKKGNNLL 256 (261)
T ss_pred EEECCCCCeee
Confidence 77765555444
No 28
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.74 E-value=3.3e-17 Score=162.55 Aligned_cols=164 Identities=16% Similarity=0.242 Sum_probs=124.3
Q ss_pred hhHhhhhhcccccCcccHHHHHh-hHHHH-----------------------------HHHHHHHHHHhhcccCceEEEE
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILS-ERESI-----------------------------SHAMQANLDHATEPWGVKVERV 331 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~-~R~~i-----------------------------~~~i~~~~~~~~~~~Gi~v~~v 331 (457)
+...+++++|+++|+++++|+++ +|++| +..|.+.+.+.+.+|||+|++|
T Consensus 119 l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V 198 (317)
T TIGR01932 119 IKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQLKDIGIEVVDV 198 (317)
T ss_pred HHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44567899999999999999997 56666 5678888899999999999999
Q ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHH
Q psy9223 332 EIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKAS----RALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQT 407 (457)
Q Consensus 332 ~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa----~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~ 407 (457)
.|+|++||+++++||+++|+|||+++|...++||++.++ ++++++.+++++ |+++..+.+|.|+.-..-.+.++
T Consensus 199 ~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ae--A~a~a~~~~Aegea~a~~~~~~a 276 (317)
T TIGR01932 199 RIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSE--AYRTARIIKGEGDAEAAKIYSDA 276 (317)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988774 666666666765 45555666666653333334444
Q ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHhhhcCCCcceeccCCCcchhhh
Q psy9223 408 LQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTF 454 (457)
Q Consensus 408 ~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457)
+. +++. ++ ....++++++....++++.+++|++++++..|
T Consensus 277 ~~---~~p~---~~-~~~~~le~~~~~~~~~~~~~vl~~~~~~~~~~ 316 (317)
T TIGR01932 277 YG---KDPE---FY-SFWRSLEAYEKSFKDNQDEKVLSTDSEFFQYM 316 (317)
T ss_pred Hc---cCHH---HH-HHHHHHHHHHHHhCCCCCEEEECCCcHHHHhh
Confidence 43 2221 11 12356666666666666678999999887755
No 29
>KOG2962|consensus
Probab=99.73 E-value=2.2e-16 Score=142.35 Aligned_cols=147 Identities=17% Similarity=0.281 Sum_probs=127.9
Q ss_pred EeeCCceeeecceeEEEEEEeceEeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec
Q psy9223 58 SFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF 137 (457)
Q Consensus 58 ~~~~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~ 137 (457)
.++.+.++.|++|+.||.||-|... +.+.+||+|+.+||+..+..|.+..|+-++...+|-|+.|+.+..|-.-.....
T Consensus 17 ~~~~s~vHkieEGHvgvYyRGGALL-~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L 95 (322)
T KOG2962|consen 17 AFLSSAVHKIEEGHVGVYYRGGALL-TSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFL 95 (322)
T ss_pred HHHHHHHhhcccCceEEEEecceee-eccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhh
Confidence 3557789999999999999999987 478999999999999999999999999999999999999998887743221111
Q ss_pred ------------------hhHHHHHHHHHHHHHccCcHHHHHhh-HHHHHHHHHHHHHhhcccc--CcEEEEEEeecCCC
Q psy9223 138 ------------------LRKRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPW--GVKVERVEIKDVRL 196 (457)
Q Consensus 138 ------------------~~l~~~~~~alR~vi~~~~l~~l~~~-R~~i~~~i~~~l~~~l~~~--GI~i~~v~I~~i~~ 196 (457)
..+.+-+...+...++.+++.+++-+ -++|.+.++.+|+..+..+ |++|..|+++....
T Consensus 96 ~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkI 175 (322)
T KOG2962|consen 96 RPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKI 175 (322)
T ss_pred chhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCC
Confidence 44556677889999999999999987 8999999999999999988 99999999999999
Q ss_pred cHHHHHHHH
Q psy9223 197 PQQLQRAMA 205 (457)
Q Consensus 197 p~~v~~a~~ 205 (457)
|+.+...++
T Consensus 176 PEaiRrN~E 184 (322)
T KOG2962|consen 176 PEAIRRNFE 184 (322)
T ss_pred hHHHHHhHH
Confidence 999988764
No 30
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.7e-16 Score=161.05 Aligned_cols=176 Identities=20% Similarity=0.230 Sum_probs=149.2
Q ss_pred eeCCceeeecceeEEEEEEece-------EeeCcccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE
Q psy9223 59 FDVPPQEIVQEYERAVIFRLGR-------VREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV 131 (457)
Q Consensus 59 ~~~~~~~~V~~ge~~Vv~~~Gk-------~~~~~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~ 131 (457)
|+...+|++.+...++|..+++ ..+.+++.+|+||.+|+++...++|++...+++....+.|+||.+++++++
T Consensus 29 f~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~ 108 (548)
T COG2268 29 FFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAV 108 (548)
T ss_pred HHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEE
Confidence 3333666665555555555521 122378999999999999999999999999998878899999999999999
Q ss_pred EEEEec-----------------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEE
Q psy9223 132 VYYRRF-----------------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVER 188 (457)
Q Consensus 132 v~yrI~-----------------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~ 188 (457)
.+.+|. ..++..+++++|.+++++|+.++..+|..+...+.+.+...|.+.|+.|++
T Consensus 109 a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s 188 (548)
T COG2268 109 AYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDS 188 (548)
T ss_pred EEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeee
Confidence 999998 345566789999999999999999999999999999999999999999999
Q ss_pred EEeecCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 189 VEIKDVRLP-------QQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEA 234 (457)
Q Consensus 189 v~I~~i~~p-------~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea 234 (457)
+.|.|+..+ ..+.++...+.+++-.+++.+.+++.+++.....+++
T Consensus 189 ~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a 241 (548)
T COG2268 189 LAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEA 241 (548)
T ss_pred eeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Confidence 999999999 9999999999999988888888888887775555544
No 31
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.68 E-value=7.8e-16 Score=149.62 Aligned_cols=130 Identities=24% Similarity=0.346 Sum_probs=114.7
Q ss_pred hhhHhhhhhcccccCcccHHHHHhh-HHHHHHHHHHHHHHhhccc--CceEEEEEEeecCCCHHHHHHHHHHHHHHHHHH
Q psy9223 281 STRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREGR 357 (457)
Q Consensus 281 ~~~~~~~~~~R~~v~~~~l~~vl~~-R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~ 357 (457)
.+...+++++|+++|++++++++++ |++|+..|++.+++.++.| ||+|++|+|+|++||+++++||++++.|+++++
T Consensus 114 ~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~ 193 (266)
T cd03404 114 TLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRE 193 (266)
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999995 9999999999999999876 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy9223 358 AKVIAAEAEMKAS--RALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQS 410 (457)
Q Consensus 358 a~~~~Aeg~~~aa--~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~ 410 (457)
+.+.+||+++++. +++++|.++..+|+|++...+..|.++...+.-+.++|.+
T Consensus 194 ~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 194 RLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999987664 7777777888888888888888887776666666676664
No 32
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.67 E-value=1.4e-15 Score=145.81 Aligned_cols=131 Identities=23% Similarity=0.351 Sum_probs=109.7
Q ss_pred hhhHhhhhhcccccCcccHHHHHhh-HHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q psy9223 281 STRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAK 359 (457)
Q Consensus 281 ~~~~~~~~~~R~~v~~~~l~~vl~~-R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~ 359 (457)
.+...+++++|+++|++++++++++ |++|+..+++.+++.+++|||+|+++.|+||.||++++++|++++.|+|+++|+
T Consensus 92 ~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~ 171 (242)
T cd03405 92 RLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAA 171 (242)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHh---hhhHHHHHHHHHHHHHH
Q psy9223 360 VIAAEAEMKA---------------SRALKEAADVIVESPAALQKRLQKI---QTNYLFQLRYLQTLQSI 411 (457)
Q Consensus 360 ~~~Aeg~~~a---------------a~~~~~a~~~~~~~~a~~~~~~~~a---~~~~~~~~r~le~~~~i 411 (457)
..+|||+.++ |+++++|..+.++|++...+.++++ +|+++.++++|++|+.+
T Consensus 172 ~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~~~~~ 241 (242)
T cd03405 172 EFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEAYRNS 241 (242)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 8887776654 2444455555555566655555544 66788888888888754
No 33
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.65 E-value=2e-15 Score=145.95 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=82.5
Q ss_pred hHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhccc--CceEEEEEEeecCCCHHHHHHHHHHHHHHHHHH--
Q psy9223 283 RLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREGR-- 357 (457)
Q Consensus 283 ~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~-- 357 (457)
...+++++|+++|+++++++++ +|+.|+..+++.+++.+++| ||+|++|+|+|++||++|+++| ++|+|||++.
T Consensus 99 ~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aER~k~~~ 177 (280)
T cd03406 99 FNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLI 177 (280)
T ss_pred HHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHHHHhhhh
Confidence 3457889999999999999998 99999999999999999988 9999999999999999999997 8999999999
Q ss_pred ------HHHHHHHHHHHHH
Q psy9223 358 ------AKVIAAEAEMKAS 370 (457)
Q Consensus 358 ------a~~~~Aeg~~~aa 370 (457)
|.+.+|||++.++
T Consensus 178 ~~~~~~~~~~~ae~~~~~~ 196 (280)
T cd03406 178 AIQKQKVVEKEAETERKKA 196 (280)
T ss_pred ccchhHHHHHHhhHHHHHH
Confidence 9999999999887
No 34
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.64 E-value=1.9e-15 Score=129.62 Aligned_cols=103 Identities=26% Similarity=0.362 Sum_probs=94.9
Q ss_pred EeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-----------------hhHHHHHHHHHHHHHccCcHHHHHh-hHH
Q psy9223 104 VDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-----------------LRKRLLAATTLRNVLGTRNLAEILS-ERE 165 (457)
Q Consensus 104 v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-----------------~~l~~~~~~alR~vi~~~~l~~l~~-~R~ 165 (457)
+|+|.++.+. +..++|+|++.+.++++++|||. ..+.+.+++++|+++|+++++++++ +|+
T Consensus 3 ~~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 3 YSTRLQEVDE-KIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred ccceeeeccc-ceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 6788888774 48899999999999999999998 2466778999999999999999997 799
Q ss_pred HHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHH
Q psy9223 166 SISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 207 (457)
Q Consensus 166 ~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~ 207 (457)
.|.+.+++.+++.+++|||+|.+|.|++++||+++.++++++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875
No 35
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.62 E-value=2.8e-15 Score=129.41 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=94.4
Q ss_pred EeeeEEEeecCCCccccCCCcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHccCcHHHHH
Q psy9223 104 VDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLGTRNLAEIL 161 (457)
Q Consensus 104 v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~~~~l~~l~ 161 (457)
+|+|.+.++++++.++|+|++++.|+++++|||. ..+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999999999999999999999998 123345678999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHH
Q psy9223 162 SERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAA 206 (457)
Q Consensus 162 ~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~ 206 (457)
++|+.+..++.+.++..+++||++|.+|.|++|++|+.+.+++.+
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 999999999999999999999999999999999999998877653
No 36
>KOG2620|consensus
Probab=99.59 E-value=2.7e-15 Score=138.20 Aligned_cols=174 Identities=30% Similarity=0.451 Sum_probs=127.9
Q ss_pred EEEEeeccceeEEEEecCccccCCCCCCeeEEEeccccceeEEEEEEEEeeCCceee-ecceeEEEEEEeceEeeCcccC
Q psy9223 10 HKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEI-VQEYERAVIFRLGRVREGGPRG 88 (457)
Q Consensus 10 ~~~~~v~~~e~~l~~~~g~~~~~~~~~~g~~~~~~~~~~~~~i~v~~~~~~~~~~~~-V~~ge~~Vv~~~Gk~~~~~~~~ 88 (457)
|-+.+|++.+-+++-|.|+|.+ .+.||..++.++++.+. +..+...+ ++..+..-++.
T Consensus 7 ~vi~~VpQ~~a~VvER~GkF~~--iLePG~~fl~p~~d~i~--------~v~~lkeia~~~~~q~aiTk----------- 65 (301)
T KOG2620|consen 7 TVIRFVPQQEAAVVERFGKFHR--ILEPGLHFLPPVIDKIA--------YVHSLKEIAILDPKQEAITK----------- 65 (301)
T ss_pred eeEEeechhHhHHHHHhhhhhh--hcCCcceechhhhhhHH--------HHHHHHHHhhcccccceeec-----------
Confidence 4566899999999999999997 78899998887765421 10010000 00000000111
Q ss_pred CceeEEcCceeEE-EEEee--eEEEeecCCCccccCCCcEEEEeEEEEEEec---hhHHHHHHHHHHHHHccCcHHHHHh
Q psy9223 89 PGLFFILPCIDDY-AKVDL--RTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF---LRKRLLAATTLRNVLGTRNLAEILS 162 (457)
Q Consensus 89 pGl~~~~P~i~~v-~~v~~--r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~---~~l~~~~~~alR~vi~~~~l~~l~~ 162 (457)
|.| ..+|- ..+.++.. +| ...|.+. .++.+.+++++|+.+|+++||.++.
T Consensus 66 ----------DNV~v~idgvly~rv~dp~------~~--------dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFe 121 (301)
T KOG2620|consen 66 ----------DNVFVQIDGVLYYRVVDPY------AD--------DASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFE 121 (301)
T ss_pred ----------ccEEEEEEEEEEEEEeccc------cc--------ccccccCCHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 111 01111 11111111 11 2467777 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 163 ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKAS 228 (457)
Q Consensus 163 ~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa 228 (457)
.|+.++..|.++++.....||++|....|+||.||+.+.++|+.+..|||.++|.+.++||+++++
T Consensus 122 er~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~ 187 (301)
T KOG2620|consen 122 ERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQ 187 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 999999999999999999999999999999999999999999999999999999988888888774
No 37
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.50 E-value=1.5e-13 Score=127.40 Aligned_cols=101 Identities=20% Similarity=0.334 Sum_probs=85.7
Q ss_pred hhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVI 361 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~ 361 (457)
+...+++++|+++|+++++|++++|++|+..|++.+++.+++|||+|+++.|+||+||+++++||++++.|++++++
T Consensus 94 i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~--- 170 (196)
T cd03401 94 LPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAER--- 170 (196)
T ss_pred hcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHH---
Confidence 34468889999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCHHH
Q psy9223 362 AAEAEMKASRALKEAADVIVESPAA 386 (457)
Q Consensus 362 ~Aeg~~~aa~~~~~a~~~~~~~~a~ 386 (457)
|+.+.+.|++++++....++|++.
T Consensus 171 -a~~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 171 -AKFVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 444555555566665555555543
No 38
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.38 E-value=8.1e-12 Score=105.55 Aligned_cols=103 Identities=42% Similarity=0.690 Sum_probs=94.4
Q ss_pred eeeEEEeecCCCccccCCCcEEEEeEEEEEEec---------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHH
Q psy9223 105 DLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF---------------LRKRLLAATTLRNVLGTRNLAEILSERESISH 169 (457)
Q Consensus 105 ~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~---------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~ 169 (457)
+.+..+.+.....++|+|+.++++++++.|+|. ..+...+.+++|+++++++++++.++|..+.+
T Consensus 3 ~~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 82 (121)
T cd02106 3 DLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAA 82 (121)
T ss_pred cceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHH
Confidence 344556666778899999999999999999999 26778899999999999999999999999999
Q ss_pred HHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHH
Q psy9223 170 AMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 207 (457)
Q Consensus 170 ~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~ 207 (457)
.+++.+...++.||++|.+|.|+++.+|+++.++++++
T Consensus 83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 83 EVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999875
No 39
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.38 E-value=1.6e-12 Score=122.19 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=84.2
Q ss_pred hhhhHhhhhhcccccCcccHHHHHh-------hHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILS-------ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEA 352 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~-------~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~A 352 (457)
..+...+++++|+++|+++++++++ +|++|+.++++.+++.++.|||+|++++|++++||+++.+||+++|+|
T Consensus 87 ~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~A 166 (219)
T cd03402 87 EFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQA 166 (219)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHH
Confidence 4567799999999999999999986 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9223 353 TREGRAKVIAAEAEMKA 369 (457)
Q Consensus 353 er~~~a~~~~Aeg~~~a 369 (457)
+|+.+|....+||+.--
T Consensus 167 e~~~~Ar~~~~~Ga~~~ 183 (219)
T cd03402 167 SAIIAARRKIVEGAVGM 183 (219)
T ss_pred HHHHHHHHHHhcccchH
Confidence 99999999999987643
No 40
>KOG3090|consensus
Probab=99.31 E-value=5.2e-12 Score=113.88 Aligned_cols=129 Identities=19% Similarity=0.364 Sum_probs=102.6
Q ss_pred HhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHH------------
Q psy9223 284 LLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAE------------ 351 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~------------ 351 (457)
.++.+.+.++|++++.++++++|+.++..|++.+-+.+.+|.|-++||.|+.+.+.++...|++.+.-
T Consensus 132 SIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~V 211 (290)
T KOG3090|consen 132 SIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIV 211 (290)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 36778899999999999999999999999999999999999999999999999999999999998654
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hCCCCEEEEeCcHH
Q psy9223 352 --ATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSIS---QEKNSTIVFPIPLR 426 (457)
Q Consensus 352 --Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~i~---~~~~~~~v~~~~~~ 426 (457)
|+++++.++.+||||+.+|+..++| +...+++ ..+|-+++-++|+ .+++++++++.+..
T Consensus 212 ekA~qek~~~ivrAqGEaksAqliGeA---i~nn~~f-------------i~Lrki~aAr~IA~tia~S~NkvyL~~~~L 275 (290)
T KOG3090|consen 212 EKAEQEKQSAIVRAQGEAKSAQLIGEA---IKNNPAF-------------ITLRKIEAAREIAQTIASSANKVYLSSDDL 275 (290)
T ss_pred HHHHHhhhhhhhhhccchHHHHHHHHH---HhCCccc-------------eeehhHHHHHHHHHHHhcCCCeEEecccce
Confidence 4455555555666666666666655 4555554 4678888877776 46778999966544
Q ss_pred HH
Q psy9223 427 YL 428 (457)
Q Consensus 427 ~~ 428 (457)
++
T Consensus 276 lL 277 (290)
T KOG3090|consen 276 LL 277 (290)
T ss_pred ee
Confidence 33
No 41
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.02 E-value=9.5e-10 Score=99.89 Aligned_cols=88 Identities=32% Similarity=0.543 Sum_probs=80.8
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHH-HH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREG-RA 358 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~-~a 358 (457)
..+...++.++|+++++++++++++.|+++...+.+.+++.+.+|||+|.++.|.++.+|+++.+++.+++.|++++ ++
T Consensus 91 ~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~~~ 170 (179)
T PF01145_consen 91 NLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQQA 170 (179)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-HH
T ss_pred hhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHHHHH
Q psy9223 359 KVIAAEAEM 367 (457)
Q Consensus 359 ~~~~Aeg~~ 367 (457)
.+.+||+|+
T Consensus 171 ~~~~a~~ea 179 (179)
T PF01145_consen 171 EIERAEAEA 179 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhCC
Confidence 777777764
No 42
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.01 E-value=2.4e-08 Score=93.14 Aligned_cols=146 Identities=21% Similarity=0.315 Sum_probs=113.8
Q ss_pred CCceeeecceeEEEEEEeceEeeCcccCCceeE-------------------EcCceeEEEEEeeeEEE-eecCC-Cccc
Q psy9223 61 VPPQEIVQEYERAVIFRLGRVREGGPRGPGLFF-------------------ILPCIDDYAKVDLRTVS-FDVPP-QEVM 119 (457)
Q Consensus 61 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~~-------------------~~P~i~~v~~v~~r~~~-~~~~~-~~v~ 119 (457)
..|--+|++|+.+|.+.-|++. .+.+||.|- ..||-..|+.|+++... ..+.. .++.
T Consensus 13 ~GS~LiV~egQ~Avfv~~G~i~--d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFVNDGKIA--DVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred CCCEEEECCCCEEEEEECCEEE--EEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence 4566799999999999999998 489999994 24666778889987754 23322 2222
Q ss_pred cCC----CcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHc--cCcHHHHHhhHHHHHHHH
Q psy9223 120 SKD----SVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLG--TRNLAEILSERESISHAM 171 (457)
Q Consensus 120 T~D----~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~--~~~l~~l~~~R~~i~~~i 171 (457)
-.| .+.+..-++..|||. +.++..+.+.+-+.++ +.++.++-.+-.+|++.+
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 356777888888888 3455555555666665 478999999999999999
Q ss_pred HHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHH
Q psy9223 172 QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 208 (457)
Q Consensus 172 ~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~ 208 (457)
++.+++.++.||++|.++.|.+|++|+++++.+.++.
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998753
No 43
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.00 E-value=6.7e-10 Score=95.18 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=65.3
Q ss_pred hhhHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHH
Q psy9223 281 STRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 349 (457)
Q Consensus 281 ~~~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~ 349 (457)
.+.+.+++++|+++|+++++++++ +|+.|++.+.+.+++.+++|||+|++++|+|++||+++++|++++
T Consensus 54 ~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 54 IVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred eechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 456789999999999999999997 899999999999999999999999999999999999999999864
No 44
>KOG3083|consensus
Probab=98.94 E-value=1.2e-09 Score=98.83 Aligned_cols=135 Identities=18% Similarity=0.311 Sum_probs=106.0
Q ss_pred HhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 284 LLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAA 363 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~A 363 (457)
.+..+.++++|++++.+|++++|+.+++.+.+.+.+.+..||+.++||.|++..+.++..+|++.+.-|++|+++..
T Consensus 121 sI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErar--- 197 (271)
T KOG3083|consen 121 SITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERAR--- 197 (271)
T ss_pred cchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---
Confidence 36778899999999999999999999999999999999999999999999999999999999999888888885543
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHh---CCCCEEEEe
Q psy9223 364 EAEMKASRALKEAADVIVESPAALQKRLQKI---QTNYLFQLRYLQTLQSISQ---EKNSTIVFP 422 (457)
Q Consensus 364 eg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a---~~~~~~~~r~le~~~~i~~---~~~~~~v~~ 422 (457)
--.+.|+.++.|+-+.+|+++.+.+.+..+ .|+-++.++.+|+-++++. .+.+..|+|
T Consensus 198 -FvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~Ls~s~nv~YLp 261 (271)
T KOG3083|consen 198 -FVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQLSRSRNVTYLP 261 (271)
T ss_pred -HHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHHHhcCCCceecc
Confidence 333444444555555555555555555544 3566778899999988874 344555654
No 45
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=98.74 E-value=9.5e-09 Score=88.54 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=61.5
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM 346 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~ 346 (457)
..+..++++++|+++|++++++++++|++|+.+|.+.++..+++|||+|.+++|+||++|+...+++
T Consensus 58 ~~l~~~~~~~lR~~ig~~tl~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~ 124 (128)
T cd03399 58 ELVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHc
Confidence 3445578999999999999999999999999999999999999999999999999999999876654
No 46
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=98.68 E-value=4.9e-08 Score=86.94 Aligned_cols=68 Identities=49% Similarity=0.821 Sum_probs=64.0
Q ss_pred hhHhhhhhcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHH
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 349 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~ 349 (457)
+...+++++|+++|+++++++++ +|+++++.+++.+++.+++||++++++.|+++.+|+++++||+++
T Consensus 91 l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 91 IEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred HHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 44568889999999999999999 799999999999999999999999999999999999999999875
No 47
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.53 E-value=8.8e-08 Score=89.43 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=64.9
Q ss_pred hhhHhhhhhcccccCcccHHHHHhh--HHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHH
Q psy9223 281 STRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 349 (457)
Q Consensus 281 ~~~~~~~~~~R~~v~~~~l~~vl~~--R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~ 349 (457)
.+...+++++|+++|++++++++.. |++|++.+++.+++.+++||++|+++.|++|.||++++++|+++
T Consensus 136 ~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 136 SLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 4566899999999999999999985 99999999999999999999999999999999999999999864
No 48
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=98.51 E-value=2.6e-07 Score=77.74 Aligned_cols=70 Identities=33% Similarity=0.595 Sum_probs=65.8
Q ss_pred hhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHH
Q psy9223 281 STRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 350 (457)
Q Consensus 281 ~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~ 350 (457)
.+...+.+++|+.+++++++++.++|+.|.+.+++.+...++.||++|.++.|.++.+|+++.+++++++
T Consensus 52 ~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~~ 121 (121)
T cd02106 52 ALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ 121 (121)
T ss_pred HHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhhC
Confidence 4566889999999999999999999999999999999999999999999999999999999999998763
No 49
>KOG2962|consensus
Probab=98.22 E-value=5.7e-05 Score=69.12 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=53.1
Q ss_pred hcccccCcccHHHHHh-hHHHHHHHHHHHHHHhhccc--CceEEEEEEeecCCCHHHHHHHHH
Q psy9223 289 TLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAA 348 (457)
Q Consensus 289 ~~R~~v~~~~l~~vl~-~R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i~~p~~v~~a~~~ 348 (457)
.+...++.++|+||+- --+.|...++..+++.+..+ |++|..|+++.-..|+.++.-++.
T Consensus 123 E~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ 185 (322)
T KOG2962|consen 123 ELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFEL 185 (322)
T ss_pred HHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHH
Confidence 5566778899999997 67999999999999999888 999999999999999999877654
No 50
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.20 E-value=4.6e-05 Score=71.91 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=108.0
Q ss_pred CCceeeecceeEEEEEEeceEeeCcccCCcee-------------------EEcCceeEEEEEeeeEEE-eecC-CCccc
Q psy9223 61 VPPQEIVQEYERAVIFRLGRVREGGPRGPGLF-------------------FILPCIDDYAKVDLRTVS-FDVP-PQEVM 119 (457)
Q Consensus 61 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~~~pGl~-------------------~~~P~i~~v~~v~~r~~~-~~~~-~~~v~ 119 (457)
..|..+|.|++-++.+.-|++.. -.-++|.+ |..|+-+.|+.|+++++. +.+. ++++.
T Consensus 38 nGs~l~Vrp~qmamfvn~G~I~d-vf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin 116 (345)
T COG4260 38 NGSILHVRPNQMAMFVNGGQIAD-VFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred cCcEEEEecCceEEEEcCCEEEe-eecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence 44666788888888888888872 23336655 345677888999998877 4443 34444
Q ss_pred cCC-----CcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHccC--cHHHHHhhHHHHHHH
Q psy9223 120 SKD-----SVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLGTR--NLAEILSERESISHA 170 (457)
Q Consensus 120 T~D-----~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~~~--~l~~l~~~R~~i~~~ 170 (457)
-.| +.+++..++..|+|+ ..+-+.+-.+|-..++++ .+..+-.+--+|++.
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~ 196 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY 196 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence 444 477888999999998 222334445555555554 444454567899999
Q ss_pred HHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHH
Q psy9223 171 MQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 208 (457)
Q Consensus 171 i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~ 208 (457)
+.+.|.+.+..||..|+++.|.+|++|++.++.+..+.
T Consensus 197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 99999999999999999999999999999999988753
No 51
>PTZ00491 major vault protein; Provisional
Probab=98.03 E-value=0.0028 Score=69.06 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=103.8
Q ss_pred eeecceeEEEEEEe--ceEeeCcccCCceeEEcCceeEEEEEeee------EEEe-----ecCC------CccccCCCcE
Q psy9223 65 EIVQEYERAVIFRL--GRVREGGPRGPGLFFILPCIDDYAKVDLR------TVSF-----DVPP------QEVMSKDSVT 125 (457)
Q Consensus 65 ~~V~~ge~~Vv~~~--Gk~~~~~~~~pGl~~~~P~i~~v~~v~~r------~~~~-----~~~~------~~v~T~D~~~ 125 (457)
|.||.+...-|+-+ ++-. -+.||-+.+.-|- +....+++. ...+ .+.+ ..+-|+|...
T Consensus 465 ~~vphn~avqvydyk~~~~R--vv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSR--VVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEcCCCcEEEEEEcccCceE--EEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 34554444444332 3332 4677888777776 444444331 1111 1111 2478999999
Q ss_pred EEEeEEEEEEec-------------------hhHHHHHHHHHHHHHccCcHHHHHhhHHH-HHHHHHHHHHhh-------
Q psy9223 126 LHVDAVVYYRRF-------------------LRKRLLAATTLRNVLGTRNLAEILSERES-ISHAMQANLDHA------- 178 (457)
Q Consensus 126 v~v~~~v~yrI~-------------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~-i~~~i~~~l~~~------- 178 (457)
+.+..++.|+.. .-.-..+.|-+|..+++.+++++..+-.. |.+.+.....+.
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999999988 22234567889999999999999986433 344444422221
Q ss_pred -ccccCcEEEEEEeecCCC-cHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 179 -TEPWGVKVERVEIKDVRL-PQQLQRAMA-------------AEAEATREGRAKVIAAEAEMKASRALKEA 234 (457)
Q Consensus 179 -l~~~GI~i~~v~I~~i~~-p~~v~~a~~-------------~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea 234 (457)
+...|+-|++|.|+++.| ++...+++. +...|.+++++...+|+|+.+..+..-++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~ 692 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKA 692 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHH
Confidence 244599999999999997 444555554 34455566777777777777666554443
No 52
>KOG2668|consensus
Probab=97.61 E-value=0.00024 Score=68.99 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=77.8
Q ss_pred HhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCH--HHHHHHHHHHHHHHHHHHHHH
Q psy9223 284 LLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQ--QLQRAMAAEAEATREGRAKVI 361 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~--~v~~a~~~~~~Aer~~~a~~~ 361 (457)
...+...|.++|.+|..|++.+|+++..++++.++..+.++||.|.+..|+|+.=.+ +...++-+...|+-.++|.+.
T Consensus 100 ~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~rdArIg 179 (428)
T KOG2668|consen 100 GTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVARDARIG 179 (428)
T ss_pred HHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHhhcccc
Confidence 456778999999999999999999999999999999999999999999999986544 788999999999999999999
Q ss_pred HHHHHHHH
Q psy9223 362 AAEAEMKA 369 (457)
Q Consensus 362 ~Aeg~~~a 369 (457)
.||+.+++
T Consensus 180 vAEAk~ea 187 (428)
T KOG2668|consen 180 VAEAKREA 187 (428)
T ss_pred hHHhhhhc
Confidence 88887755
No 53
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=96.19 E-value=0.017 Score=54.11 Aligned_cols=56 Identities=21% Similarity=0.457 Sum_probs=51.8
Q ss_pred CcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHH
Q psy9223 295 GTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 350 (457)
Q Consensus 295 ~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~ 350 (457)
.+.++.++-++-++|++.+++.++...+.||++++++.|.+|.+|+++++++.++.
T Consensus 152 ~~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 152 SKISILDIPAHLDEISEALKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 45788888889999999999999999999999999999999999999999998764
No 54
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.029 Score=58.79 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=73.2
Q ss_pred hHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCC-------HHHHHHHHHHHHHHHH
Q psy9223 283 RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLP-------QQLQRAMAAEAEATRE 355 (457)
Q Consensus 283 ~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p-------~~v~~a~~~~~~Aer~ 355 (457)
.......+|.+++++|+.++.++|..+.+.|.+.+...+..-|+.++++.|+|+.-+ ....+|.-.+..++-.
T Consensus 141 ~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~ 220 (548)
T COG2268 141 EDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVL 220 (548)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHHHHH
Confidence 345677999999999999999999999999999999999999999999999999998 7777777777666666
Q ss_pred HHHHHHHHHHHHHH
Q psy9223 356 GRAKVIAAEAEMKA 369 (457)
Q Consensus 356 ~~a~~~~Aeg~~~a 369 (457)
+.+.+..+|.+++.
T Consensus 221 ~~a~ia~~E~~~~t 234 (548)
T COG2268 221 QDAEIAENEAEKET 234 (548)
T ss_pred HHHHHHHhhhhhhh
Confidence 66666665555544
No 55
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=94.55 E-value=0.44 Score=45.51 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=77.9
Q ss_pred EeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-----------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHH
Q psy9223 104 VDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-----------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQ 172 (457)
Q Consensus 104 v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-----------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~ 172 (457)
.++....++.|......+||..+.+.+.++.|-+ ..+-..-+..+..+=+.-+-.+++.+-+.|.+.+.
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaNi~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL 199 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVL 199 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEecHHHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHH
Confidence 3445556666767788899999999999998887 33344445555555666788888999888887765
Q ss_pred HHHHhhccc-cCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 173 ANLDHATEP-WGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKA 227 (457)
Q Consensus 173 ~~l~~~l~~-~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~a 227 (457)
+. .|+. --.+|.++.|-||+.-+.+-..++. .+.|++.++.+|++|...
T Consensus 200 ~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~---dQAeADk~iAqAkAEeRR 249 (316)
T PF12127_consen 200 EK---GLDAGTAFEILSIDIADIDVGENIGAKLQT---DQAEADKRIAQAKAEERR 249 (316)
T ss_pred hh---CCCcCceeEEEEeeeeccccchhhchhhhH---HHHHHHHHHHHHHHHHHH
Confidence 43 4443 4789999999999986554333221 122444445555544433
No 56
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=92.13 E-value=1.3 Score=39.47 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=60.4
Q ss_pred CcEEEEeEEEEEEec--------hhHHHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccCcEEEEEEee
Q psy9223 123 SVTLHVDAVVYYRRF--------LRKRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIK 192 (457)
Q Consensus 123 ~~~v~v~~~v~yrI~--------~~l~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~ 192 (457)
+...-|...+.|++. ..=.+.+++++...+++.+.+++-+ +++.+..++++.+++.+..=+ .|.+|.++
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT 154 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFT 154 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHHHHhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeee
Confidence 566778888888888 3334678899999999999999998 699999999999999996655 88888888
Q ss_pred cCC
Q psy9223 193 DVR 195 (457)
Q Consensus 193 ~i~ 195 (457)
+..
T Consensus 155 ~fi 157 (159)
T COG1580 155 NFI 157 (159)
T ss_pred hhh
Confidence 764
No 57
>PRK13665 hypothetical protein; Provisional
Probab=92.05 E-value=0.78 Score=43.61 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=74.9
Q ss_pred EeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-----------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHH
Q psy9223 104 VDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-----------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQ 172 (457)
Q Consensus 104 v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-----------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~ 172 (457)
.++....++.|......+||..+.+.+.++.|-+ ..+-..-++.+..+-+.-+-.+++++-+.|++.+
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaNi~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~V- 203 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRANIDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTV- 203 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEeehhHHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHH-
Confidence 3455566677777788999999999998888844 1122223344555556678888899888888654
Q ss_pred HHHHhhccc-cCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 173 ANLDHATEP-WGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEM 225 (457)
Q Consensus 173 ~~l~~~l~~-~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~ 225 (457)
|.+.|+. --.+|.++.|-||+.-+.+=..++. .+.|++.++.+|++|.
T Consensus 204 --L~kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~---dQAEADk~iAqAkAEe 252 (316)
T PRK13665 204 --LSKGLDAGTAFEILSIDIADVDVGKNIGAKLQT---DQAEADKRIAQAKAEE 252 (316)
T ss_pred --HhccCCcCceeEEEEEeeeccccchhhchhhhH---HHHHHHHHHHHHHHHH
Confidence 4455543 3789999999999987655333321 2234444455555543
No 58
>PTZ00491 major vault protein; Provisional
Probab=89.11 E-value=3.7 Score=45.51 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=45.4
Q ss_pred HhhhhhcccccCcccHHHHHhh-HHHHHHHHHHHHHHhh--------cccCceEEEEEEeecCCC-HHHHHHHHH
Q psy9223 284 LLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHAT--------EPWGVKVERVEIKDVRLP-QQLQRAMAA 348 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~~-R~~i~~~i~~~~~~~~--------~~~Gi~v~~v~i~~i~~p-~~v~~a~~~ 348 (457)
..+.+.+|+.|+..++|+...+ =.-|.+.|....++.. ..-|.-|.+|.|+.+.|- ...++++.+
T Consensus 577 k~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvEpvD~~tr~~Lqk 651 (850)
T PTZ00491 577 KTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVEPVDERTRDSLQK 651 (850)
T ss_pred HHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeeeecCHHHHHHHHH
Confidence 3667899999999999999873 3445555555333322 344999999999999984 445555544
No 59
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=87.94 E-value=1.1 Score=43.16 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=47.4
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHH
Q psy9223 298 NLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAE 351 (457)
Q Consensus 298 ~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~ 351 (457)
++..+-++--+|+..+++.+++...++|..|+++.|-.|.+|+++|+.++.++.
T Consensus 182 ~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~s 235 (345)
T COG4260 182 RFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRNS 235 (345)
T ss_pred eehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhcc
Confidence 344555577789999999999999999999999999999999999999998754
No 60
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=85.41 E-value=10 Score=30.37 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccCcEEEEEEeecC
Q psy9223 141 RLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 194 (457)
Q Consensus 141 ~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i 194 (457)
.+.+++++...+++.+.+++-+ ++..+.+++++.+++.+.+ -.|.+|.+++.
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 4578899999999999999986 6999999999999988843 33777777664
No 61
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=84.92 E-value=5.3 Score=33.35 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=54.0
Q ss_pred ccccCCCcEEEEeEEEEEEec-------------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHH-HHHH----
Q psy9223 117 EVMSKDSVTLHVDAVVYYRRF-------------------LRKRLLAATTLRNVLGTRNLAEILSERESIS-HAMQ---- 172 (457)
Q Consensus 117 ~v~T~D~~~v~v~~~v~yrI~-------------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~-~~i~---- 172 (457)
.+-|+|...+.+..++.|+.. .-.-..+.+-+|..+++.+.++...+-..+- +.+.
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 467999999999999999887 2233456788999999999999998644332 2221
Q ss_pred -HHHHhh--ccccCcEEEEEEeecCCC
Q psy9223 173 -ANLDHA--TEPWGVKVERVEIKDVRL 196 (457)
Q Consensus 173 -~~l~~~--l~~~GI~i~~v~I~~i~~ 196 (457)
..+.+. ....|+-|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 111221 234599999999999875
No 62
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.92 E-value=5.8 Score=34.62 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=53.0
Q ss_pred CcEEEEeEEEEEEec---hhH---HHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccCcEEEEEEeecC
Q psy9223 123 SVTLHVDAVVYYRRF---LRK---RLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 194 (457)
Q Consensus 123 ~~~v~v~~~v~yrI~---~~l---~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i 194 (457)
+..+.+++++.+.=. ..+ .+.+++.+-..+++.+.+++-+ +++.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 62 ~~ylk~~i~l~~~~~~~~~el~~~~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 62 GNFIRIQFKIETDSKKAKEELEKRDFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred CCEEEEEEEEEECCHHHHHHHHhcChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 456666666655432 222 2367888999999999999987 6999999999999988865 4 6888887764
No 63
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=80.54 E-value=13 Score=33.66 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=55.7
Q ss_pred ccccCCC--cEEEEeEEEEEEec--------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccccCcEE
Q psy9223 117 EVMSKDS--VTLHVDAVVYYRRF--------LRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKV 186 (457)
Q Consensus 117 ~v~T~D~--~~v~v~~~v~yrI~--------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i 186 (457)
.+.+.|. ....+..++.|... ..-.+.++.++...+++.+.+|+- ++..+.+++++.++..+.+ =.|
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~EL~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~--GkV 168 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILNELGRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRN--GEI 168 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHHHHHhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCC--Cce
Confidence 3444444 44457777777766 333456889999999999999998 9999999999999988874 236
Q ss_pred EEEEeecC
Q psy9223 187 ERVEIKDV 194 (457)
Q Consensus 187 ~~v~I~~i 194 (457)
.+|.+++.
T Consensus 169 ~~VYFTeF 176 (181)
T PRK06654 169 KDIAFTQI 176 (181)
T ss_pred EEEEEEEE
Confidence 66666654
No 64
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=71.46 E-value=46 Score=29.78 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred cEEEEeEEEEEEec------hhHHHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccCcEEEEEEeecC
Q psy9223 124 VTLHVDAVVYYRRF------LRKRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 194 (457)
Q Consensus 124 ~~v~v~~~v~yrI~------~~l~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i 194 (457)
..+.+.+++.++=. ..-.+.+++.+-.++++.+.+++.+ ++..+.+++.+.++..+.+- .|.+|.+++.
T Consensus 87 ryLkv~i~L~~~~~~~~~~~~~~~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 87 QYLKLKVVLEVKDEKVVEQIKPLMPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred eEEEEEEEEEECCHHHHHHHHHhchHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 45556666654322 2334568889999999999999987 69999999999999988753 3788887764
No 65
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=70.86 E-value=31 Score=32.05 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=59.1
Q ss_pred CccccCCCcEEEEeEEEEEE--ec----hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHHHhhccccCcEEE
Q psy9223 116 QEVMSKDSVTLHVDAVVYYR--RF----LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHATEPWGVKVE 187 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~yr--I~----~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l~~~l~~~GI~i~ 187 (457)
.++.|+||..+.+-..+.-. .. ..++......+...++..+++++... -+.+..+|....+...--.-++|.
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~ra~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~IyPlr~veIr 179 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKRARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIR 179 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchhhhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhccCcceEEEE
Confidence 56899999999988877533 33 77888888999999999999999975 567777777777666544467776
Q ss_pred EEEee
Q psy9223 188 RVEIK 192 (457)
Q Consensus 188 ~v~I~ 192 (457)
.+.+.
T Consensus 180 Kvkvl 184 (203)
T PRK04057 180 KSKVL 184 (203)
T ss_pred EEEEE
Confidence 66654
No 66
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=69.72 E-value=61 Score=31.38 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=50.6
Q ss_pred cccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 290 LRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKA 369 (457)
Q Consensus 290 ~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~a 369 (457)
+-.+=+.-+-.++|+.=+.|+..+.+. ..-..--++|.++.|-|++..+++-.-+ +-.+||.+ .++-+|++|...
T Consensus 175 VttiGSa~~hk~VLEnPd~ISk~VL~k--gLDagTAFeIlSIDIaDidVG~NIGA~L-q~dQAeAD--k~iAqAkAEeRR 249 (316)
T PF12127_consen 175 VTTIGSAESHKEVLENPDSISKTVLEK--GLDAGTAFEILSIDIADIDVGENIGAKL-QTDQAEAD--KRIAQAKAEERR 249 (316)
T ss_pred eeeeccchhHHHHhcCHHHHHHHHHhh--CCCcCceeEEEEeeeeccccchhhchhh-hHHHHHHH--HHHHHHHHHHHH
Confidence 333334456678888888888876543 2223347899999999999998765433 22333333 334444444444
Q ss_pred HHHHHHHHHHHhc
Q psy9223 370 SRALKEAADVIVE 382 (457)
Q Consensus 370 a~~~~~a~~~~~~ 382 (457)
|.+.+.-+++.++
T Consensus 250 A~AvA~EQEm~A~ 262 (316)
T PF12127_consen 250 AMAVAREQEMKAK 262 (316)
T ss_pred HHHHHHHHHHHHH
Confidence 4443333444433
No 67
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=69.65 E-value=6.9 Score=34.85 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=47.6
Q ss_pred hHhhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhcccCceEEEEEEeecC
Q psy9223 283 RLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDVR 337 (457)
Q Consensus 283 ~~~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~ 337 (457)
...+++.+...+++.+.+|+-+ +++.+..+|++.++..+..=| .|.+|.+++..
T Consensus 102 ~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~fi 157 (159)
T COG1580 102 KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTNFI 157 (159)
T ss_pred hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeehhh
Confidence 3489999999999999999998 999999999999999987665 78888887754
No 68
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=67.59 E-value=64 Score=28.68 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=53.1
Q ss_pred CcEEEEeEEEEEEec------hhHHHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccC--cEEEEEEee
Q psy9223 123 SVTLHVDAVVYYRRF------LRKRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWG--VKVERVEIK 192 (457)
Q Consensus 123 ~~~v~v~~~v~yrI~------~~l~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~G--I~i~~v~I~ 192 (457)
...+.+++++.+.=. ..-.+.+++.+-.++++.+.+++.+ ++..+.+++.+.++..+..-+ -.|.+|.++
T Consensus 78 ~rylkv~i~L~~~~~~~~~~l~~~~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt 157 (162)
T PRK07021 78 DRVLYVGLTLRLPDEATRERLKDYLPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFT 157 (162)
T ss_pred ceEEEEEEEEEECCHHHHHHHHHhCHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeee
Confidence 455666666655422 2234568888999999999999987 699999999999998886432 357888877
Q ss_pred cC
Q psy9223 193 DV 194 (457)
Q Consensus 193 ~i 194 (457)
+.
T Consensus 158 ~f 159 (162)
T PRK07021 158 AF 159 (162)
T ss_pred ec
Confidence 64
No 69
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=64.91 E-value=38 Score=29.36 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhcccc-C-cEEEEEEeecC
Q psy9223 141 RLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPW-G-VKVERVEIKDV 194 (457)
Q Consensus 141 ~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~-G-I~i~~v~I~~i 194 (457)
.+.+++.+-..+++.+.+++-+ +|..+.+++.+.++..+..- | -.|.+|.+++.
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 4678899999999999999987 69999999999999998753 2 35788887764
No 70
>PRK13665 hypothetical protein; Provisional
Probab=64.52 E-value=1.1e+02 Score=29.53 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=48.8
Q ss_pred CcccHHHHHhhHHHHHHHHHHHHHHhhcc-cCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 295 GTRNLAEILSERESISHAMQANLDHATEP-WGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRAL 373 (457)
Q Consensus 295 ~~~~l~~vl~~R~~i~~~i~~~~~~~~~~-~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa~~~ 373 (457)
+.-+-.+||++=+.|++.+. ++-++. --++|.++.|-|++..+++-.-+. -.+|| +..++-+|++|...|.+-
T Consensus 185 Sa~~hk~VLEnPd~ISk~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA~Lq-~dQAE--ADk~iAqAkAEeRRAmAv 258 (316)
T PRK13665 185 SSESHKEVLENPDSISKTVL---SKGLDAGTAFEILSIDIADVDVGKNIGAKLQ-TDQAE--ADKRIAQAKAEERRAMAV 258 (316)
T ss_pred CcchHHHHhcCHHHHHHHHH---hccCCcCceeEEEEEeeeccccchhhchhhh-HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34556788888888886543 333332 478999999999999987654332 22333 333444555554444444
Q ss_pred HHHHHHHhcC
Q psy9223 374 KEAADVIVES 383 (457)
Q Consensus 374 ~~a~~~~~~~ 383 (457)
+.-+++.+..
T Consensus 259 A~EQEmkA~v 268 (316)
T PRK13665 259 ALEQEMKAKV 268 (316)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 71
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=55.70 E-value=98 Score=28.18 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEEeEEEEEEec------hhHHHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhccccCcEEEEEEeecC
Q psy9223 125 TLHVDAVVYYRRF------LRKRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 194 (457)
Q Consensus 125 ~v~v~~~v~yrI~------~~l~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i 194 (457)
.+.+.+++.+.-. ..-.+.+++++-.++++.+.+++.+ ++..+.+++.+.++..+.. | .|.+|.+++.
T Consensus 104 yLkv~i~Le~~~~~~~~el~~~~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 104 YLKTSISLELSNEKLKPELDKKDPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred EEEEEEEEEECCHhHHHHHHhhhhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 4555555554322 3344678899999999999999987 6999999999999999865 3 5777877764
No 72
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=55.57 E-value=54 Score=30.21 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=53.4
Q ss_pred CccccCCCcEEEEeEEEEE--Eec----hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHHHhhccccCcEEE
Q psy9223 116 QEVMSKDSVTLHVDAVVYY--RRF----LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHATEPWGVKVE 187 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~y--rI~----~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l~~~l~~~GI~i~ 187 (457)
.++.|+||..+.|-..+.= +.. .+++......+.+.++..++++++.. -+.+..+|....+...--.-++|.
T Consensus 106 ~dvkT~DGy~lRvf~i~fT~~ra~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~Ir 185 (194)
T PF01015_consen 106 VDVKTKDGYLLRVFCIAFTKKRAKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKIYPLRNVEIR 185 (194)
T ss_dssp EEEEETTTEEEEEEEEEEE----TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEE
T ss_pred EEEEcCCCcEEEEEEEEEEeecccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccccccceEEEE
Confidence 4688999988887766543 322 77888899999999999999999985 667777777776665433344444
Q ss_pred EEEe
Q psy9223 188 RVEI 191 (457)
Q Consensus 188 ~v~I 191 (457)
-+.+
T Consensus 186 KvKv 189 (194)
T PF01015_consen 186 KVKV 189 (194)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 73
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=55.55 E-value=97 Score=27.75 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=50.6
Q ss_pred EEEEeEEEEEEec------hhHHHHHHHHHHHHHccCcHHHHHh--hHHHHHHHHHHHHHhhcccc-C-cEEEEEEeecC
Q psy9223 125 TLHVDAVVYYRRF------LRKRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPW-G-VKVERVEIKDV 194 (457)
Q Consensus 125 ~v~v~~~v~yrI~------~~l~~~~~~alR~vi~~~~l~~l~~--~R~~i~~~i~~~l~~~l~~~-G-I~i~~v~I~~i 194 (457)
.+.+.+++.++=. ..-.+.+++.+-.++++.+.+++-+ ++..+.+++.+.++..++.. | -.|.+|.+++.
T Consensus 88 yLkv~i~l~~~d~~~~~~~~~~~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 88 LVQIKVQLMVRGSDDEELAKKHIPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred EEEEEEEEEECCHHHHHHHHHhhHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4455555544422 3344568899999999999999987 58899999888888877653 3 25778887764
No 74
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=52.40 E-value=1.1e+02 Score=28.10 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCH
Q psy9223 343 QRAMAAEAEATREGRAKVIAAEAEMKA----SRALKEAADVIVESP 384 (457)
Q Consensus 343 ~~a~~~~~~Aer~~~a~~~~Aeg~~~a----a~~~~~a~~~~~~~~ 384 (457)
.+-+....-.+-+++|..+.++++.++ ++++.+|.+++.+++
T Consensus 9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe 54 (198)
T PRK01558 9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAE 54 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333334433433333333 244444544444443
No 75
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=50.30 E-value=1.6e+02 Score=27.38 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=58.7
Q ss_pred CccccCCCcEEEEeEEEE--EEec----hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHHHhhccccCcEEE
Q psy9223 116 QEVMSKDSVTLHVDAVVY--YRRF----LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHATEPWGVKVE 187 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~--yrI~----~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l~~~l~~~GI~i~ 187 (457)
..+.|+||..+.|-+.+. +|+. .+++......+.+-.+..++++++.. -+.+..+|.++.+...-=.-++|.
T Consensus 108 ~dVkTkDGy~~RV~~~~~T~~ra~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyPLr~veIr 187 (214)
T COG1890 108 VDVKTKDGYVLRVKAMAFTRRRAKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIR 187 (214)
T ss_pred EEEEecCCcEEEEEEEEEEehhcccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhcccchheEEE
Confidence 578999999988877654 4444 78888899999999999999999884 567777777766655433367777
Q ss_pred EEEeec
Q psy9223 188 RVEIKD 193 (457)
Q Consensus 188 ~v~I~~ 193 (457)
.+.+..
T Consensus 188 K~kvl~ 193 (214)
T COG1890 188 KSKVLK 193 (214)
T ss_pred eeeeec
Confidence 766554
No 76
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=46.56 E-value=1.1e+02 Score=25.41 Aligned_cols=95 Identities=24% Similarity=0.315 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhhhhhhhHhhhhhcccccCccc-H
Q psy9223 226 KASRALKEAADVIVES-----PAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRN-L 299 (457)
Q Consensus 226 ~aa~~~aea~~~~~~~-----~~~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~R~~v~~~~-l 299 (457)
+-..+.++-.+.+... ++..+.+-+.++.+.-....-.+=.|.|.+..+.+|.. -.++.+.+-+++|..+ .
T Consensus 13 dy~~Al~eV~~lfd~dpE~~~~e~dr~~Ilatl~eAyE~kh~~i~aP~pve~I~t~Md~---~glt~~dLa~~iGSks~v 89 (120)
T COG5499 13 DYRWALAEVDKLFDNDPENPLLELDRADILATLIEAYEFKHYPIAAPDPVEVIRTLMDQ---YGLTLADLANEIGSKSRV 89 (120)
T ss_pred HHHHHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhhhhhhchhhcCCHHHHHHHHHHH---hCCcHHHHHHHhCchHHH
Confidence 3344555666666543 34566667777777665555556567777777776543 3356777777787765 5
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcccCc
Q psy9223 300 AEILSERESISHAMQANLDHATEPWGV 326 (457)
Q Consensus 300 ~~vl~~R~~i~~~i~~~~~~~~~~~Gi 326 (457)
.++|++|..+.-+.-.. ...+|||
T Consensus 90 S~iL~~rraLTle~ikk---L~q~~gI 113 (120)
T COG5499 90 SNILSGRRALTLEHIKK---LHQRFGI 113 (120)
T ss_pred HHHHhhhhHhhHHHHHH---HHHHhCc
Confidence 78889777666554433 3456787
No 77
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=41.17 E-value=52 Score=26.14 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=43.8
Q ss_pred hhHhhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhcccCceEEEEEEeec
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 336 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i 336 (457)
....++.++-..++..+.+++-+ +++.+.+++.+.+++.+.+ -.|.+|.+++.
T Consensus 42 ~~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 42 NMPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred ccHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 33478899999999999999996 8999999999999988743 24888888764
No 78
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=40.61 E-value=2.5e+02 Score=31.10 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred HHHHHHH-hhcccCceEEEE-----EEeecCCCHHHHHHHHHHHHHHHHHHH
Q psy9223 313 MQANLDH-ATEPWGVKVERV-----EIKDVRLPQQLQRAMAAEAEATREGRA 358 (457)
Q Consensus 313 i~~~~~~-~~~~~Gi~v~~v-----~i~~i~~p~~v~~a~~~~~~Aer~~~a 358 (457)
.-+.+++ .+...||.|+|- ..+-. -|++++.+.+++...++++++
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 569 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLD-DKEELQREKEEKEALKEQKRL 569 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEEC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3455665 477889999984 33333 345566555555444444333
No 79
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=40.25 E-value=2.2e+02 Score=26.47 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhc
Q psy9223 371 RALKEAADVIVE 382 (457)
Q Consensus 371 ~~~~~a~~~~~~ 382 (457)
+++.+|.+++.+
T Consensus 46 eA~~EAe~ii~~ 57 (207)
T PRK01005 46 EAQEEAEKIIRS 57 (207)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 80
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=38.64 E-value=48 Score=28.81 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=42.8
Q ss_pred hhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhcccCceEEEEEEeec
Q psy9223 285 LAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 336 (457)
Q Consensus 285 ~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i 336 (457)
.+++.+=..++..+.+++-+ +|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 67788888899999999987 8999999999999998876 4 6888887764
No 81
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=36.81 E-value=3e+02 Score=24.33 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=8.5
Q ss_pred ccHHHHHhhH-HHHHHHH
Q psy9223 297 RNLAEILSER-ESISHAM 313 (457)
Q Consensus 297 ~~l~~vl~~R-~~i~~~i 313 (457)
.++-.++.+| +.|...+
T Consensus 27 kPI~~~LeeR~~~I~~~L 44 (154)
T PRK06568 27 KAILNSLDAKILEVQEKV 44 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555666644 3444443
No 82
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=34.65 E-value=60 Score=28.09 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=44.4
Q ss_pred HhhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhccc--CceEEEEEEeec
Q psy9223 284 LLAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPW--GVKVERVEIKDV 336 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~--Gi~v~~v~i~~i 336 (457)
..+++.+-..++..+.+++-+ +|+.+.+++.+.++..+.+- .-.|++|.+++.
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 478888888999999999987 99999999999999998753 224888888764
No 83
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=33.84 E-value=2.8e+02 Score=25.47 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9223 350 AEATREGRAKVIAAEAE 366 (457)
Q Consensus 350 ~~Aer~~~a~~~~Aeg~ 366 (457)
..|+.+++.-+..|+.+
T Consensus 29 ~eA~~eAe~Ii~eA~~e 45 (198)
T PRK01558 29 LEAKEEAEEIIAKAEEE 45 (198)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 84
>PRK09098 type III secretion system protein HrpB; Validated
Probab=30.70 E-value=4.7e+02 Score=24.75 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q psy9223 345 AMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPA 385 (457)
Q Consensus 345 a~~~~~~Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a 385 (457)
+-+..+.+++++--..-+.+++.--++++.+|.+++.++..
T Consensus 32 ~~~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~ 72 (233)
T PRK09098 32 AALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARR 72 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555433333333333334555555555555433
No 85
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.67 E-value=76 Score=28.91 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=40.1
Q ss_pred hhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhcccCceEEEEEEeec
Q psy9223 285 LAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWGVKVERVEIKDV 336 (457)
Q Consensus 285 ~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i 336 (457)
.+++++-..++..+.+|+-+ +|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 128 ~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 128 VIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred HHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 35566667778899999987 8999999999999999875 3 5777777764
No 86
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=30.02 E-value=1.1e+02 Score=24.79 Aligned_cols=40 Identities=28% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Q psy9223 344 RAMAAEAEATREGRAKVIAAEAEMKAS--RALKEAADVIVES 383 (457)
Q Consensus 344 ~a~~~~~~Aer~~~a~~~~Aeg~~~aa--~~~~~a~~~~~~~ 383 (457)
+.+.+.+.||+++...+..|+.++... +|+.+|...+...
T Consensus 4 ~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~ 45 (105)
T PF03179_consen 4 DGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEF 45 (105)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888777777766553 5555554444433
No 87
>PLN03086 PRLI-interacting factor K; Provisional
Probab=27.89 E-value=2.8e+02 Score=30.01 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=3.8
Q ss_pred CCCEEEE
Q psy9223 415 KNSTIVF 421 (457)
Q Consensus 415 ~~~~~v~ 421 (457)
.+.+|++
T Consensus 90 ~GdKI~L 96 (567)
T PLN03086 90 NGDKIKL 96 (567)
T ss_pred CCCeEEc
Confidence 3456666
No 88
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=27.30 E-value=4.9e+02 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=27.4
Q ss_pred HHHHHh-hccccCcEEEEE-----EeecCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9223 172 QANLDH-ATEPWGVKVERV-----EIKDVRLPQQLQRAMAAEAEATREGRAKV 218 (457)
Q Consensus 172 ~~~l~~-~l~~~GI~i~~v-----~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~ 218 (457)
-+.+.+ .|...||.|.+- .++ ...|.++.+..+++..++++++++.
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWK-LDDKEELQREKEEKEALKEQKRLRK 571 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEE-ECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566 478889999874 333 3345666666666555444444433
No 89
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.93 E-value=5.4e+02 Score=24.19 Aligned_cols=82 Identities=11% Similarity=0.196 Sum_probs=49.4
Q ss_pred ccCCCcEEEEeEEEEEEec----------h-hHHHHHHHHHHHHHccCcHHHHHhhHHHHHHHHHHHHHhhccc-cCcEE
Q psy9223 119 MSKDSVTLHVDAVVYYRRF----------L-RKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEP-WGVKV 186 (457)
Q Consensus 119 ~T~D~~~v~v~~~v~yrI~----------~-~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~i~~~l~~~l~~-~GI~i 186 (457)
...||..|.+.+.+..|-+ + .+...-+..+..+-++..-.+++.+-+.+++.+.+ +.++. -..+|
T Consensus 139 vam~gievkakaritvrani~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gtafei 215 (328)
T COG4864 139 VAMNGIEVKAKARITVRANIERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGTAFEI 215 (328)
T ss_pred eeccceEEEEEEEEEehhhHHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCceeEE
Confidence 4467777777666665544 2 22222233333334445667778888888776543 33332 36889
Q ss_pred EEEEeecCCCcHHHHHH
Q psy9223 187 ERVEIKDVRLPQQLQRA 203 (457)
Q Consensus 187 ~~v~I~~i~~p~~v~~a 203 (457)
.++.|-|++....+-..
T Consensus 216 lsidiadvdigkniga~ 232 (328)
T COG4864 216 LSIDIADVDIGKNIGAK 232 (328)
T ss_pred EEeeeeccccccccccc
Confidence 99999999887765433
No 90
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=24.98 E-value=4e+02 Score=22.28 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Q psy9223 345 AMAAEAEATREGRAKVIAAEAEMKAS--RALKEAADVIVE 382 (457)
Q Consensus 345 a~~~~~~Aer~~~a~~~~Aeg~~~aa--~~~~~a~~~~~~ 382 (457)
-+..-+.||++++..+..|+.++..- +|+.+|.+-+.+
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999988888888766553 555555444444
No 91
>KOG0994|consensus
Probab=24.96 E-value=1.2e+03 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 340 QQLQRAMAAEAEATREGRAKVIAAEAEMKA 369 (457)
Q Consensus 340 ~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~a 369 (457)
+.++.+++.+.+|-++++.+...|+...+.
T Consensus 1559 ~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1559 EDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666666666665555555554433
No 92
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=24.86 E-value=3.7e+02 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 345 AMAAEAEATREGRAKVIAAEAEM 367 (457)
Q Consensus 345 a~~~~~~Aer~~~a~~~~Aeg~~ 367 (457)
.+..+-.||.+.+..+..|+.+.
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea 26 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEA 26 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444
No 93
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.03 E-value=1.5e+02 Score=26.23 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=41.0
Q ss_pred hhhhhcccccCcccHHHHHh--hHHHHHHHHHHHHHHhhcccC--ceEEEEEEeec
Q psy9223 285 LAATTLRNVLGTRNLAEILS--ERESISHAMQANLDHATEPWG--VKVERVEIKDV 336 (457)
Q Consensus 285 ~~~~~~R~~v~~~~l~~vl~--~R~~i~~~i~~~~~~~~~~~G--i~v~~v~i~~i 336 (457)
.+++.+-..++..+.+++-+ +++.+.++|.+.+++.+..-+ -.|.+|.+++.
T Consensus 104 ~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 104 EVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 46666777788899999987 899999999999998885432 35888887764
No 94
>PTZ00321 ribosomal protein L11; Provisional
Probab=20.59 E-value=2.4e+02 Score=27.89 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=41.6
Q ss_pred cccCcccHHHHHh----hHHHHH-------HHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9223 292 NVLGTRNLAEILS----ERESIS-------HAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKV 360 (457)
Q Consensus 292 ~~v~~~~l~~vl~----~R~~i~-------~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~ 360 (457)
+.+|+.+++++++ +..+++ +.+-+.+-..+.+.||+|+. +|..-..-|..--+++-.-|-++-+.+
T Consensus 144 e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeG---KD~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (342)
T PTZ00321 144 HYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIG---VDTPHSSPVKGMTEKQYAEESERYRAM 220 (342)
T ss_pred ceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEec---ccCCCCCccccccHHHHHHHHHHHHHH
Confidence 6899999999998 334432 22344444556778999987 555555556655555544444554444
Q ss_pred H
Q psy9223 361 I 361 (457)
Q Consensus 361 ~ 361 (457)
.
T Consensus 221 ~ 221 (342)
T PTZ00321 221 H 221 (342)
T ss_pred H
Confidence 3
No 95
>PTZ00321 ribosomal protein L11; Provisional
Probab=20.49 E-value=5.9e+02 Score=25.28 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=27.4
Q ss_pred HHHccCcHHHHHh----hHHHHH-------HHHHHHHHhhccccCcEEEEEE
Q psy9223 150 NVLGTRNLAEILS----ERESIS-------HAMQANLDHATEPWGVKVERVE 190 (457)
Q Consensus 150 ~vi~~~~l~~l~~----~R~~i~-------~~i~~~l~~~l~~~GI~i~~v~ 190 (457)
+.+|..++++++. ...++. +.+-..+-..+...||+|+...
T Consensus 144 e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGKD 195 (342)
T PTZ00321 144 HYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGVD 195 (342)
T ss_pred ceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEeccc
Confidence 6899999999987 223322 2234445556678899998744
No 96
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=20.47 E-value=6.3e+02 Score=22.66 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=4.3
Q ss_pred eCcHHHHHHH
Q psy9223 422 PIPLRYLQTL 431 (457)
Q Consensus 422 ~~~~~~~~~~ 431 (457)
|.+..+.+.+
T Consensus 123 ~~D~~~~~~~ 132 (188)
T PRK02292 123 KDDEDLVKSL 132 (188)
T ss_pred cccHHHHHHH
Confidence 3333455443
No 97
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=20.32 E-value=5.8e+02 Score=22.22 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=4.2
Q ss_pred CHHHHHHHHH
Q psy9223 339 PQQLQRAMAA 348 (457)
Q Consensus 339 p~~v~~a~~~ 348 (457)
|.-+...|+.
T Consensus 24 ~~pi~~~l~~ 33 (159)
T PRK09173 24 PGMIARSLDA 33 (159)
T ss_pred HHHHHHHHHH
Confidence 3334444444
Done!