Query psy9223
Match_columns 457
No_of_seqs 354 out of 3037
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:03:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 4.6E-31 1.6E-35 241.9 14.9 167 97-263 2-181 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 3.9E-24 1.3E-28 184.5 9.2 118 93-210 3-133 (133)
3 3bk6_A PH stomatin; archaea, t 99.9 1.5E-21 5.3E-26 178.5 10.3 126 280-418 56-181 (188)
4 1win_A Flotillin 2; BAND 7 dom 99.8 4.5E-21 1.5E-25 167.4 3.9 115 97-211 3-139 (143)
5 2rpb_A Hypothetical membrane p 99.7 1.5E-17 5.2E-22 139.1 8.1 97 103-199 4-113 (113)
6 4fvg_A Stomatin; mixed alpha-b 99.5 2.1E-14 7.1E-19 123.5 4.6 84 269-352 49-133 (133)
7 1win_A Flotillin 2; BAND 7 dom 99.3 4.6E-13 1.6E-17 116.5 0.4 73 282-354 68-140 (143)
8 2rpb_A Hypothetical membrane p 98.9 4.6E-10 1.6E-14 93.3 3.6 62 280-341 52-113 (113)
9 2zuo_A MVP, major vault protei 98.1 0.0013 4.5E-08 70.1 27.2 167 65-234 460-697 (861)
10 2zuo_A MVP, major vault protei 85.2 5.4 0.00018 42.9 11.3 65 284-348 573-656 (861)
11 3j20_A 30S ribosomal protein S 59.0 45 0.0015 29.6 8.8 76 116-191 107-190 (198)
12 2b5u_A Colicin E3; high resolu 38.3 2.5E+02 0.0085 28.3 11.1 35 325-359 279-313 (551)
13 2xzm_4 40S ribosomal protein S 31.6 1.7E+02 0.0056 27.1 8.2 76 116-191 128-223 (265)
14 2b5u_A Colicin E3; high resolu 29.2 1E+02 0.0036 31.0 6.7 43 182-224 278-320 (551)
15 3u5c_B RP10A, 40S ribosomal pr 23.6 92 0.0032 28.6 4.9 75 116-190 125-216 (255)
16 2acm_B Mucin-1; auto-catalytic 22.5 85 0.0029 21.6 3.3 22 178-199 31-52 (55)
17 4efa_G V-type proton ATPase su 20.1 3.4E+02 0.012 21.7 7.5 35 343-377 9-45 (119)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.6e-31 Score=241.92 Aligned_cols=167 Identities=48% Similarity=0.740 Sum_probs=152.4
Q ss_pred ceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhh
Q psy9223 97 CIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSE 163 (457)
Q Consensus 97 ~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~ 163 (457)
|++++.++|+|.++++++++.++|+|+++|+|+++++|||. ..+.+.+++++|+++|++++++++++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~ 81 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE 81 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh
Confidence 67999999999999999989999999999999999999998 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Q psy9223 164 RESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPA 243 (457)
Q Consensus 164 R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~ 243 (457)
|+.|+..+++.+++.+++|||+|.+|.|++|+||+++.++|+++++||++++|++++|+||+++++..++|++.|+.+|.
T Consensus 82 R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~ 161 (188)
T 3bk6_A 82 RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM 161 (188)
T ss_dssp HHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCe
Q psy9223 244 ALQLRYLQTLNSISQEKNST 263 (457)
Q Consensus 244 ~~~~r~le~l~~~~~~~~~~ 263 (457)
++++||||++++++.++|++
T Consensus 162 ~l~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 162 ALQLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999877665
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=3.9e-24 Score=184.50 Aligned_cols=118 Identities=69% Similarity=0.994 Sum_probs=94.5
Q ss_pred EEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-------------hhHHHHHHHHHHHHHccCcHHH
Q psy9223 93 FILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAE 159 (457)
Q Consensus 93 ~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~ 159 (457)
++.||++++.++|+|.+++++++++++|+|++.|.|+++++|||. ..+..+++++||+++|++++++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~lde 82 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQ 82 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHH
Confidence 678999999999999999999999999999999999999999998 7888999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHH
Q psy9223 160 ILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEA 210 (457)
Q Consensus 160 l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~A 210 (457)
++++|++++.++++.+++.+++|||+|.+|+|++++||++++++|+++++|
T Consensus 83 il~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 83 ILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999887765
No 3
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.5e-21 Score=178.47 Aligned_cols=126 Identities=49% Similarity=0.748 Sum_probs=108.3
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAK 359 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~ 359 (457)
..+..++++++|+++|++++++++++|++|+..|++.+++.+++|||+|++|+|+||.||+++++||+++++|||+++|.
T Consensus 56 ~~i~~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~ 135 (188)
T 3bk6_A 56 MATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRAR 135 (188)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCE
Q psy9223 360 VIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNST 418 (457)
Q Consensus 360 ~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~a~~~~~~~~r~le~~~~i~~~~~~~ 418 (457)
+++|||++++++..++|.+.++.++... .+||||++++++++++++
T Consensus 136 i~~Aege~~a~~~~a~a~~~~~~~~~~l-------------~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 136 ITLAEAERQAAEKLREAAEIISEHPMAL-------------QLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTHH-------------HHHHTTC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhCHHHH-------------HHHHHHHHHHHhcCCCCc
Confidence 9999999999999999988887776654 799999999999987764
No 4
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.81 E-value=4.5e-21 Score=167.39 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=106.8
Q ss_pred ceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHcc
Q psy9223 97 CIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLGT 154 (457)
Q Consensus 97 ~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~~ 154 (457)
|++++.++|+|.+++++++++++|+|+.++.||++++|||. ..+.+.++++||+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999996 11345578999999999
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHH
Q psy9223 155 RNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEAT 211 (457)
Q Consensus 155 ~~l~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae 211 (457)
+++++++++|+.|++.+.+.+++.+++|||+|.+|+|+||++|+++.+||++++.||
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998877665
No 5
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.71 E-value=1.5e-17 Score=139.09 Aligned_cols=97 Identities=46% Similarity=0.757 Sum_probs=93.5
Q ss_pred EEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHH
Q psy9223 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSERESISH 169 (457)
Q Consensus 103 ~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~ 169 (457)
++|+|.+++++++++++|+|+++|.++++++|||. ..+.+.+++++|+++|++++++++++|+++++
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~ 83 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINA 83 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHH
Confidence 58999999999999999999999999999999998 67889999999999999999999999999999
Q ss_pred HHHHHHHhhccccCcEEEEEEeecCCCcHH
Q psy9223 170 AMQANLDHATEPWGVKVERVEIKDVRLPQQ 199 (457)
Q Consensus 170 ~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~ 199 (457)
.+++.+++.+++|||+|.+|.|++++||++
T Consensus 84 ~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 84 RLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999974
No 6
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.47 E-value=2.1e-14 Score=123.45 Aligned_cols=84 Identities=64% Similarity=0.917 Sum_probs=64.2
Q ss_pred chhhhhhhhhh-hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHH
Q psy9223 269 PVDIISTFMKN-HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMA 347 (457)
Q Consensus 269 ~~~~~~~~~~~-~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~ 347 (457)
|..++....+. ..+..++++++|+++|++++++++++|++|+.++++.+++.+++|||+|++|+|+|++||+++++||+
T Consensus 49 p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~ 128 (133)
T 4fvg_A 49 ATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMA 128 (133)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC------
T ss_pred hHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHH
Confidence 33344333333 66777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy9223 348 AEAEA 352 (457)
Q Consensus 348 ~~~~A 352 (457)
++|+|
T Consensus 129 ~~~~A 133 (133)
T 4fvg_A 129 AEAEA 133 (133)
T ss_dssp -----
T ss_pred HHhcC
Confidence 99886
No 7
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.27 E-value=4.6e-13 Score=116.49 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=68.6
Q ss_pred hhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHH
Q psy9223 282 TRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATR 354 (457)
Q Consensus 282 ~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer 354 (457)
+..++++++|+++|+++|+|++++|+.|+..+++.+++.+++|||+|++|+|+||+||+++++||.+++.||.
T Consensus 68 l~~~~~~~LR~viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~ 140 (143)
T 1win_A 68 VLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP 140 (143)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcc
Confidence 4557889999999999999999999999999999999999999999999999999999999999998887763
No 8
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=98.92 E-value=4.6e-10 Score=93.30 Aligned_cols=62 Identities=39% Similarity=0.653 Sum_probs=58.8
Q ss_pred hhhhHhhhhhcccccCcccHHHHHhhHHHHHHHHHHHHHHhhcccCceEEEEEEeecCCCHH
Q psy9223 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQ 341 (457)
Q Consensus 280 ~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i~~~~~~~~~~~Gi~v~~v~i~~i~~p~~ 341 (457)
..+..++++++|+++|++++++++++|++|+..+++.+++.+++|||+|++++|+|+.||++
T Consensus 52 ~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 52 MAIVKLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 45677999999999999999999999999999999999999999999999999999999974
No 9
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.13 E-value=0.0013 Score=70.07 Aligned_cols=167 Identities=16% Similarity=0.224 Sum_probs=101.8
Q ss_pred eeecceeEEEEEEe--ceEeeCcccCCceeEEcCceeEEEEEee-----------eEEEeecCC------CccccCCCcE
Q psy9223 65 EIVQEYERAVIFRL--GRVREGGPRGPGLFFILPCIDDYAKVDL-----------RTVSFDVPP------QEVMSKDSVT 125 (457)
Q Consensus 65 ~~V~~ge~~Vv~~~--Gk~~~~~~~~pGl~~~~P~i~~v~~v~~-----------r~~~~~~~~------~~v~T~D~~~ 125 (457)
|.||.+...-++-+ |+.. -+.||-+.+.-|- +....+++ +...+.+.+ ..+-|+|...
T Consensus 460 ~rvphnaaVqvyDy~~~~~R--vvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhAr 536 (861)
T 2zuo_A 460 YRVPHNAAVQVYDYRAKRAR--VVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHAR 536 (861)
T ss_dssp EECCTTEEEEEECSSSCCEE--EECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCE
T ss_pred EEcCCCeEEEEEecCCCceE--EEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceE
Confidence 45666666666654 4443 4678888665554 43333322 111112222 3578999999
Q ss_pred EEEeEEEEEEec--------------------hhHHHHHHHHHHHHHccCcHHHHHhhHHHHHHH-HHH-----------
Q psy9223 126 LHVDAVVYYRRF--------------------LRKRLLAATTLRNVLGTRNLAEILSERESISHA-MQA----------- 173 (457)
Q Consensus 126 v~v~~~v~yrI~--------------------~~l~~~~~~alR~vi~~~~l~~l~~~R~~i~~~-i~~----------- 173 (457)
+.+..+++|+.. .-.-..+.|-+|..+++.++|++..+-..|-.. +..
T Consensus 537 L~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~ 616 (861)
T 2zuo_A 537 LQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDG 616 (861)
T ss_dssp EEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC---------
T ss_pred EEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccc
Confidence 999999999885 223345778899999999999999875554221 111
Q ss_pred ----HHHh--hccccCcEEEEEEeecCCC-cHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 174 ----NLDH--ATEPWGVKVERVEIKDVRL-PQQLQRAMA-------------AEAEATREGRAKVIAAEAEMKASRALKE 233 (457)
Q Consensus 174 ----~l~~--~l~~~GI~i~~v~I~~i~~-p~~v~~a~~-------------~~~~Ae~~~~a~~~~Ae~e~~aa~~~ae 233 (457)
...+ .+...|+-|++|.|+++.| ++...+++. +...|.++++....+|+|+.+..+...+
T Consensus 617 ~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~ 696 (861)
T 2zuo_A 617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696 (861)
T ss_dssp ----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHH
Confidence 1111 1344599999999999997 444445543 2334444555556666666666555444
Q ss_pred H
Q psy9223 234 A 234 (457)
Q Consensus 234 a 234 (457)
+
T Consensus 697 a 697 (861)
T 2zuo_A 697 S 697 (861)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=85.22 E-value=5.4 Score=42.90 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred HhhhhhcccccCcccHHHHHhhHHHHH-HHHHHH--H----------HH-----hhcccCceEEEEEEeecCCCH-HHHH
Q psy9223 284 LLAATTLRNVLGTRNLAEILSERESIS-HAMQAN--L----------DH-----ATEPWGVKVERVEIKDVRLPQ-QLQR 344 (457)
Q Consensus 284 ~~~~~~~R~~v~~~~l~~vl~~R~~i~-~~i~~~--~----------~~-----~~~~~Gi~v~~v~i~~i~~p~-~v~~ 344 (457)
..+.|.+|..|+..++|+....=..|- ..+... . .+ ....-|+.|.+|.|+.+.|-+ ..++
T Consensus 573 k~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd 652 (861)
T 2zuo_A 573 KAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRD 652 (861)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHH
Confidence 367789999999999999987543332 222111 0 01 123349999999999999853 3444
Q ss_pred HHHH
Q psy9223 345 AMAA 348 (457)
Q Consensus 345 a~~~ 348 (457)
++.+
T Consensus 653 ~Lqk 656 (861)
T 2zuo_A 653 ALQR 656 (861)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 11
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.00 E-value=45 Score=29.55 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred CccccCCCcEEEEeEEEEEEec------hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHHHhhccccCcEEE
Q psy9223 116 QEVMSKDSVTLHVDAVVYYRRF------LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHATEPWGVKVE 187 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~yrI~------~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l~~~l~~~GI~i~ 187 (457)
.++.|+||..+.+-....-.-. .+++......+...++..+++++... -+.++.+|..+.+...-=.-++|.
T Consensus 107 vdVkT~DGy~lRvf~i~fT~kra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~Ir 186 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIR 186 (198)
T ss_dssp EEEECTTSCEEEEEEEEEECSSCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred EEEEecCCCEEEEEEEEEEeccccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEE
Confidence 4689999999998887654322 67888888999999999999999986 478888888888776543455555
Q ss_pred EEEe
Q psy9223 188 RVEI 191 (457)
Q Consensus 188 ~v~I 191 (457)
.+.+
T Consensus 187 KvKv 190 (198)
T 3j20_A 187 KIKV 190 (198)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.33 E-value=2.5e+02 Score=28.33 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.4
Q ss_pred CceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q psy9223 325 GVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAK 359 (457)
Q Consensus 325 Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~ 359 (457)
|++-+-|.+.+|--|.++++-.+...++++|-.+.
T Consensus 279 g~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~ 313 (551)
T 2b5u_A 279 GHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDAT 313 (551)
T ss_dssp CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999888888888777443
No 13
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=31.61 E-value=1.7e+02 Score=27.06 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=55.3
Q ss_pred CccccCCCcEEEEeEEEEE--Ee---c-------------hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHH
Q psy9223 116 QEVMSKDSVTLHVDAVVYY--RR---F-------------LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANL 175 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~y--rI---~-------------~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l 175 (457)
.++.|.||..+.|-+...- +. . ..|+......+...++..++++++.. -+.+..+|..+.
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~ 207 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKET 207 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHh
Confidence 4688999999998776543 33 1 67777788899999999999999985 566777777776
Q ss_pred HhhccccCcEEEEEEe
Q psy9223 176 DHATEPWGVKVERVEI 191 (457)
Q Consensus 176 ~~~l~~~GI~i~~v~I 191 (457)
+...-=.-++|.-|.+
T Consensus 208 k~IyPL~~V~IrKvKv 223 (265)
T 2xzm_4 208 KNIFPLQNITIRKVKV 223 (265)
T ss_dssp TTTCCEEEEEEEEEEE
T ss_pred hhccccceEEEEEEEE
Confidence 6654333566666554
No 14
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.18 E-value=1e+02 Score=31.00 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=33.3
Q ss_pred cCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223 182 WGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAE 224 (457)
Q Consensus 182 ~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e 224 (457)
-|++-.-|.+.+|-.|.++.+..++...++++...+--...+|
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Ae 320 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAE 320 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 3888889999999999999999888888888766554333333
No 15
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=23.56 E-value=92 Score=28.63 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=56.1
Q ss_pred CccccCCCcEEEEeEEEEEEec---------------hhHHHHHHHHHHHHHccCcHHHHHhh--HHHHHHHHHHHHHhh
Q psy9223 116 QEVMSKDSVTLHVDAVVYYRRF---------------LRKRLLAATTLRNVLGTRNLAEILSE--RESISHAMQANLDHA 178 (457)
Q Consensus 116 ~~v~T~D~~~v~v~~~v~yrI~---------------~~l~~~~~~alR~vi~~~~l~~l~~~--R~~i~~~i~~~l~~~ 178 (457)
.++.|.||..+.+-....-.-. .+|+......+...++..++++++.. -+.+..+|..+.+..
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I 204 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI 204 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc
Confidence 5789999999998887654321 57777888899999999999999986 578888888887766
Q ss_pred ccccCcEEEEEE
Q psy9223 179 TEPWGVKVERVE 190 (457)
Q Consensus 179 l~~~GI~i~~v~ 190 (457)
.-=.-++|.-|.
T Consensus 205 yPL~~V~IrKvK 216 (255)
T 3u5c_B 205 FPLQNIHVRKVK 216 (255)
T ss_dssp CCCEEEECCCEE
T ss_pred cccceEEEEEEE
Confidence 533344444444
No 16
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.53 E-value=85 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=15.0
Q ss_pred hccccCcEEEEEEeecCCCcHH
Q psy9223 178 ATEPWGVKVERVEIKDVRLPQQ 199 (457)
Q Consensus 178 ~l~~~GI~i~~v~I~~i~~p~~ 199 (457)
....|.+.|.+|.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 4458999999999999999854
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=20.14 E-value=3.4e+02 Score=21.70 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q psy9223 343 QRAMAAEAEATREGRAKVIAAEAEMKAS--RALKEAA 377 (457)
Q Consensus 343 ~~a~~~~~~Aer~~~a~~~~Aeg~~~aa--~~~~~a~ 377 (457)
++.+..-+.||+++...+.+|+.++..- +|+.+|.
T Consensus 9 s~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~ 45 (119)
T 4efa_G 9 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAA 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899998888888887776542 4444443
Done!