RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9223
(457 letters)
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 254 bits (651), Expect = 5e-83
Identities = 115/217 (52%), Positives = 144/217 (66%), Gaps = 16/217 (7%)
Query: 67 VQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYA-KVDLRTVSFDVPPQEVMSKDSVT 125
V +YER V+ RLG+ GPGL FI+P ID A KVDLR DVPPQEV++KD+VT
Sbjct: 1 VPQYERGVVERLGKYH--RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVT 58
Query: 126 LHVDAVVYYRRFLRKR-------------LLAATTLRNVLGTRNLAEILSERESISHAMQ 172
+ VDAV+YYR + LA TTLR+V+G L E+LSERE I+ +
Sbjct: 59 VRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELV 118
Query: 173 ANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALK 232
LD AT+PWGVKVERVEIKD+ LPQ++Q AMA +AEA RE RAK+I AE E +A+ L
Sbjct: 119 EILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA 178
Query: 233 EAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIP 269
EAA +PAALQLR L+TL I++E ST++FP P
Sbjct: 179 EAAKQAAINPAALQLRELETLEEIAKEAASTVVFPAP 215
Score = 169 bits (431), Expect = 2e-50
Identities = 75/146 (51%), Positives = 96/146 (65%), Gaps = 13/146 (8%)
Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL 338
++ LA TTLR+V+G L E+LSERE I+ + LD AT+PWGVKVERVEIKD+ L
Sbjct: 83 RYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIIL 142
Query: 339 PQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNY 398
PQ++Q AMA +AEA RE RAK+I AE E +A+ L EAA +PAAL
Sbjct: 143 PQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAINPAAL----------- 191
Query: 399 LFQLRYLQTLQSISQEKNSTIVFPIP 424
QLR L+TL+ I++E ST+VFP P
Sbjct: 192 --QLRELETLEEIAKEAASTVVFPAP 215
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 130 bits (330), Expect = 2e-36
Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVT 125
+V E ER V+ RLGRV GPGL F++P IDD KVDLR + DVPPQE ++KD+V
Sbjct: 5 VVGEGERGVVERLGRVLR--VLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKDNVK 62
Query: 126 LHVDAVVYYR--------------RFLRKRLLAATTLRNVLGTRNLAEILS-ERESISHA 170
+ VDAVVYYR + LA TTLR+V+G R L E+L+ +RE IS
Sbjct: 63 VSVDAVVYYRVLDPLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISEN 122
Query: 171 MQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA 208
++ L+ A E WG+KVE VEIKD+RLP++++ AM A+
Sbjct: 123 IREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160
Score = 65.4 bits (160), Expect = 1e-12
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 281 STRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLP 339
LA TTLR+V+G R L E+L+ +RE IS ++ L+ A E WG+KVE VEIKD+RLP
Sbjct: 90 VIEQLAQTTLRSVIGKRTLDELLTDQREKISENIREELNEAAEAWGIKVEDVEIKDIRLP 149
Query: 340 QQLQRAMAAEA 350
++++ AM A+
Sbjct: 150 EEIKEAMEAQQ 160
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 124 bits (313), Expect = 2e-32
Identities = 85/252 (33%), Positives = 127/252 (50%), Gaps = 52/252 (20%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDD----YAKVDLRTVSFDV-PPQEVMS 120
+V+E ER V+ R GR PGL F +P + +VDLR + DV PPQEV++
Sbjct: 23 VVKEGERGVVLRFGRYTRTLG-EPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVIT 81
Query: 121 KDSVTLHVDAVVYYR-----RFLRK--------RLLAATTLRNVLGTRNLAEILSERES- 166
KD+V + VDAVV YR + + R L + LR+V+G L E+L+ER +
Sbjct: 82 KDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAE 141
Query: 167 ISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMK 226
I+ ++ LD A +PWG+KV VEIKD+ P+++Q AM + A R+ RA+++ AE E +
Sbjct: 142 INAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQ 201
Query: 227 ASR----ALKEAADVIVES----------------------------PAALQLRYLQTLN 254
A+ EAA ++ E+ P AL RYL+ L
Sbjct: 202 AAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELL 261
Query: 255 SISQEKNSTIIF 266
I+ NS ++
Sbjct: 262 EIALAGNSKVVV 273
Score = 89.0 bits (221), Expect = 8e-20
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 20/161 (12%)
Query: 281 STRLLAATTLRNVLGTRNLAEILSERES-ISHAMQANLDHATEPWGVKVERVEIKDVRLP 339
+ R L + LR+V+G L E+L+ER + I+ ++ LD A +PWG+KV VEIKD+ P
Sbjct: 113 ALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPP 172
Query: 340 QQLQRAMAAEAEATREGRAKVIAAE-----------AEMKASRALKEA---ADVIVESPA 385
+++Q AM + A R+ RA+++ AE E +A+ L EA A+VI + A
Sbjct: 173 EEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEA 232
Query: 386 ALQKRLQKIQTNYLF-----QLRYLQTLQSISQEKNSTIVF 421
K + RYL+ L I+ NS +V
Sbjct: 233 DAAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKVVV 273
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 108 bits (271), Expect = 1e-27
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQ-EVMSKDSV 124
IV E V+ R G+V GPGL F LP I VD R + +V V++KD V
Sbjct: 2 IVPPGEVGVVTRFGKVS--RVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDGV 59
Query: 125 TLHVDAVVYYR-----RFLRK-----------RLLAATTLRNVLGTRNLAEILSERESIS 168
++VD V YR + + R L + LR V+ L E+LS RE I+
Sbjct: 60 PVNVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEIA 119
Query: 169 HAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATRE-GRAKVIAAEAE 224
++ L E +G+++E V+I D+ P ++ A+ + A +E A++ AEAE
Sbjct: 120 QEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERAEAE 176
Score = 62.8 bits (153), Expect = 1e-11
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 283 RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQL 342
R L + LR V+ L E+LS RE I+ ++ L E +G+++E V+I D+ P ++
Sbjct: 92 RPLVRSALREVIARYTLDELLSNREEIAQEVKEALQEELEKYGLEIEDVQITDIDPPPEI 151
Query: 343 QRAMAAEAEATRE-GRAKVIAAEAE 366
A+ + A +E A++ AEAE
Sbjct: 152 AEAIEEKQAAEQEAEEAEIERAEAE 176
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 95.1 bits (237), Expect = 1e-23
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR-----RFLRK----------RLLAATT 147
++DLR + DVPPQEV++KD+V + VDAVV YR + L R LA +
Sbjct: 1 RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSA 60
Query: 148 LRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAE 207
LR+V+G L E+L +R+ I+ ++ L + +G++V V IKD+ P+++Q AM
Sbjct: 61 LRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120
Query: 208 A 208
Sbjct: 121 Q 121
Score = 70.8 bits (174), Expect = 6e-15
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 283 RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQL 342
R LA + LR+V+G L E+L +R+ I+ ++ L + +G++V V IKD+ P+++
Sbjct: 54 RQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEV 113
Query: 343 QRAMAAEA 350
Q AM
Sbjct: 114 QEAMEDRQ 121
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 90.3 bits (225), Expect = 1e-20
Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVT 125
IV E E+AV+ R G V PGL F LP I K D R ++ D PQ V++KD
Sbjct: 3 IVDEGEQAVVLRFGEVV-RVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKR 61
Query: 126 LHVDAVVYYR-----RFLR---------KRLLAA---TTLRNVLGTRNLAEILS-ERESI 167
L VDA +R RF + + L + LR G R L E++S ER +
Sbjct: 62 LIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGEL 121
Query: 168 SHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRA----MAAE--AEATR-----EGRA 216
++ + + G++V V IK + LP+++ + M AE A E A
Sbjct: 122 MEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEA 181
Query: 217 KVIAAEAEMKASRALKEA 234
+ I A+A+ + + L EA
Sbjct: 182 ERIRADADRERTVILAEA 199
Score = 51.4 bits (124), Expect = 2e-07
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 289 TLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRA-- 345
LR G R L E++S ER + ++ + + G++V V IK + LP+++ +
Sbjct: 100 ALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVY 159
Query: 346 --MAAE--AEATR-----EGRAKVIAAEAEMKASRALKEA 376
M AE A E A+ I A+A+ + + L EA
Sbjct: 160 RRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEA 199
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 59.5 bits (145), Expect = 5e-10
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 54/223 (24%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKV------DLRTVSFDVPPQEVM 119
IVQ ER V+ R G+ PGL + LP + +V + V +
Sbjct: 17 IVQPGERGVVLRFGKYSRTV--EPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSV 74
Query: 120 SKDSVTL-------HVDAVVYYR-----RFLRKRLLAATTLRN--------VLGTRNLAE 159
+S+ L V+ V YR +L TLR V+G L +
Sbjct: 75 PGESLMLTGDENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDD 134
Query: 160 ILSE-RESISH----AMQANLD--HATEPWGVKVERVEIKDVRLPQQLQRA----MAAEA 208
+L+E RE I+ +QA LD A G+++ V ++D P+++Q A A
Sbjct: 135 VLTEGREEIAQDVRELLQAILDAYKA----GIEIVGVNLQDADPPEEVQDAFDDVNKARQ 190
Query: 209 EATR---EGRA---KVIAAEAEMKASRALKEA----ADVIVES 241
+ R E A +V+ +A +A+R ++EA +VI E+
Sbjct: 191 DRERLINEAEAYANEVV-PKARGEAARIIQEAEAYKEEVIAEA 232
Score = 41.4 bits (98), Expect = 5e-04
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 26/122 (21%)
Query: 283 RLLAATTLRNVLGTRNLAEILSE-RESISH----AMQANLD--HATEPWGVKVERVEIKD 335
R A + +R V+G L ++L+E RE I+ +QA LD A G+++ V ++D
Sbjct: 116 RQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKA----GIEIVGVNLQD 171
Query: 336 VRLPQQLQRA----MAAEAEATR---EGRA---KVIAAEAEMKASRALKEA----ADVIV 381
P+++Q A A + R E A +V+ +A +A+R ++EA +VI
Sbjct: 172 ADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVV-PKARGEAARIIQEAEAYKEEVIA 230
Query: 382 ES 383
E+
Sbjct: 231 EA 232
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 54.7 bits (132), Expect = 2e-08
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 53/231 (22%)
Query: 89 PGLFFILPCIDDYA-KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATT 147
PG F++P ++ A ++ LR DV E +KD+V + V + YR A
Sbjct: 19 PGCHFVIPLVETVAGRLSLRVQQLDVR-VETKTKDNVFVTVVGQIQYRVSEENATDAFYK 77
Query: 148 LRN-----------VLGTR----NLAEILSERESISHAMQANLDHATEPWGVKVERVEIK 192
L N VL R L E+ +++ I+ A++ L A +G ++ I
Sbjct: 78 LGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLIT 137
Query: 193 DVRLPQQLQRAMAAEAEATREGRAKVIAAEAE----MKASRALKEA-------------- 234
D+ +++RAM A R+ A V AEAE +KA+ A EA
Sbjct: 138 DIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQA 197
Query: 235 -ADVIVESPAALQL-----------------RYLQTLNSISQEKNSTIIFP 267
AD + ES +L +Y TL + + ++ + P
Sbjct: 198 IADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTVVFRP 248
Score = 47.0 bits (112), Expect = 8e-06
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 298 NLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGR 357
L E+ +++ I+ A++ L A +G ++ I D+ +++RAM A R+
Sbjct: 101 TLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRV 160
Query: 358 AKVIAAEAE----MKASRALKEA---------------ADVIVESPAALQKRLQKIQTNY 398
A V AEAE +KA+ A EA AD + ES +L + +
Sbjct: 161 AAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKD 220
Query: 399 LFQL----RYLQTLQSISQEKNSTIVFP 422
+ L +Y TL++ + ++ + P
Sbjct: 221 VMDLLLVNQYFDTLKAYGRSSSTVVFRP 248
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH by HflKC appears to be
negative (PMID:8947034,PMID:96367) [SS 8/27/03].
Length = 261
Score = 45.9 bits (109), Expect = 2e-05
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 66 IVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVT 125
+ E ER V+ R G+ PGL + P I++ V++ V +++ D
Sbjct: 3 TIGEAERGVVLRFGKYHR--TVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENI 60
Query: 126 LHVDAVVYYR-----RFLRK--------RLLAATTLRNVLGTRNLAEILSE-RESISHAM 171
++V+ V YR ++L R + LR V+G + +IL+E R I
Sbjct: 61 VNVEMNVQYRITDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDT 120
Query: 172 QANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASR 229
+ L+ + + G+ V V + R P++++ A + RE + I EAE A+
Sbjct: 121 KERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAF-DDVIIAREDEERYI-NEAEAYANE 178
Query: 230 ALKEA 234
+ +A
Sbjct: 179 VVPKA 183
Score = 36.2 bits (84), Expect = 0.022
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%)
Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSE-RESISHAMQANLDHATEPW--GVKVERVEIKD 335
S R + LR V+G + +IL+E R I + L+ + + G+ V V +
Sbjct: 85 EDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQS 144
Query: 336 VRLPQQLQ-------RAMAAEAEATREGRAKV--IAAEAEMKASRALKEA---ADVIVES 383
R P++++ A E E A + +A A R ++EA + +
Sbjct: 145 ARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINR 204
Query: 384 PAALQKRLQKIQTNYL------FQLRYLQTLQSI 411
R K+ Y + YL+T++ +
Sbjct: 205 AKGDVARFTKLLAEYKKAPDVTRERLYLETMEKV 238
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 42.6 bits (101), Expect = 1e-04
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 40/192 (20%)
Query: 71 ERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVM----SKD---- 122
RAV+F G + G GL F +P D+R P+ + SKD
Sbjct: 9 HRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRA-----RPRNIESTTGSKDLQMV 63
Query: 123 ----SVTLHVDAVVYYRRFLR------KRLLAATT---LRNVLGTRNLAEILSERESISH 169
V DA R + +R+L + L+ V+ E++++RE +S
Sbjct: 64 NITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSA 123
Query: 170 AMQANLDHATEPWGVKVERVEIKDVRL--------------PQQLQRAMAAEAEATREGR 215
++ L + +G+ ++ V I + Q+ +RA +A +E +
Sbjct: 124 LIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQ 183
Query: 216 AKVIAAEAEMKA 227
A VI AE E +A
Sbjct: 184 AAVIRAEGEAEA 195
Score = 31.4 bits (72), Expect = 0.57
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 290 LRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL----------- 338
L+ V+ E++++RE +S ++ L + +G+ ++ V I +
Sbjct: 102 LKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAK 161
Query: 339 ---PQQLQRAMAAEAEATREGRAKVIAAEAEMKA 369
Q+ +RA +A +E +A VI AE E +A
Sbjct: 162 QVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEA 195
Score = 29.1 bits (66), Expect = 3.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 19 ERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRT 56
RAV+F G + G GL F +P D+R
Sbjct: 9 HRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRA 46
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 42.9 bits (101), Expect = 3e-04
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 15/264 (5%)
Query: 140 KRLLAATTLRNVLGTRNLA--EILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLP 197
+R +A + ++ E+ A L+ +P G E+ + L
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 198 QQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEA-ADVIVESPAALQLRYLQTLNSI 256
+ A +AE RE AE + + ++A A+ V+ AL+ R ++ + I
Sbjct: 273 ETEAEVAAWKAETRREAEQ----AEILAEQAIQEEKAQAEQEVQHAKALEAREMR-VGLI 327
Query: 257 SQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILS--ERESISHAMQ 314
++K + + I+ + AA + +G + A + + E E A Q
Sbjct: 328 ERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQ 387
Query: 315 ANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALK 374
A L A E + E+VEI VR A A AE E A +AE +A RAL
Sbjct: 388 AALVAAAE--AAEQEQVEI-AVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALA 444
Query: 375 EAADVIVESPAALQ--KRLQKIQT 396
EA V+ ++ AA +Q +
Sbjct: 445 EAIQVLGDAAAAELFKALVQALPE 468
Score = 41.4 bits (97), Expect = 8e-04
Identities = 75/381 (19%), Positives = 124/381 (32%), Gaps = 73/381 (19%)
Query: 89 PGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR------------- 135
G ++P ++ L T+ +V V +KD + L+V+AV Y +
Sbjct: 66 GGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAE 125
Query: 136 RFLRKRLLAATT----------LRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVK 185
RF K LR VL + E+ +R + +Q + G+
Sbjct: 126 RFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLV 185
Query: 186 VERVEIKDV--------------------RLPQQLQRAMAAEAEATREGRAKVIAA---- 221
++ + I D+ R+ Q LQ A AE EA +E + A
Sbjct: 186 LDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDA 245
Query: 222 ---EAEMKASRALKEAAD------VIVESPAALQLRYLQT-----LNSISQEKNS---TI 264
E E++ A K A ++ E+ A + +T I E+
Sbjct: 246 KLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKA 305
Query: 265 IFPIPVDIISTF----MKNHSTRLLAATTLRNVLG--TRNLAEILSERESISHAMQANLD 318
V M+ T L N A+ ++ E+ + A A
Sbjct: 306 QAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAI 365
Query: 319 HATEPWGVK-VERVEIKDVRLPQQL-QRAMAAEAEATR-EGRAKVIAAEAEMKASRALKE 375
A V+ E + L A AAE E RA+ AEAE +A+ E
Sbjct: 366 GAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAE 425
Query: 376 AADVIVESPAALQKRLQKIQT 396
A + + A + + +
Sbjct: 426 AEAIREKGKAEAEAKRALAEA 446
>gnl|CDD|233644 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully described
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 317
Score = 40.9 bits (96), Expect = 0.001
Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 64/233 (27%)
Query: 66 IVQEYERAVIFRLGRV-----REGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMS 120
I++E ER +I R G++ PGL F +P I+ D + + D P + +
Sbjct: 22 IIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPT 81
Query: 121 KDSVTLHVDAVV---------YYRRFLRKRLLAATT---------LRNVLGTRNLAEILS 162
K+ + +D + YY + AA LR+ +G L EI+
Sbjct: 82 KEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVR 141
Query: 163 ------ERESISHAM----QANLDH--------------------ATEPWGVKVERVEIK 192
+ A+ + N + G++V V IK
Sbjct: 142 SSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIK 201
Query: 193 DVRLPQQLQRA----MAAEAEA-------TREGRAKVIAAEAEMKASRALKEA 234
+ +L + M +E E E +A+ I +AE + + L EA
Sbjct: 202 KINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEA 254
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 124
Score = 36.6 bits (85), Expect = 0.006
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 117 EVMSKDSVTLHVDAVVYYR---------------RFLRK--RLLAATTLRNVLGTRNLAE 159
+V+SK+ ++++ D V YR + RK R + +R V G +
Sbjct: 15 DVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQ 74
Query: 160 ILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRA 203
I S +R+ I A++ L G+ +E V +++++LP Q+ A
Sbjct: 75 IYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADA 119
Score = 34.3 bits (79), Expect = 0.039
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 288 TTLRNVLGTRNLAEILS-ERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRA 345
+ +R V G +I S +R+ I A++ L G+ +E V +++++LP Q+ A
Sbjct: 61 SLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADA 119
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 33.3 bits (77), Expect = 0.082
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVY-------------YRRFLRKR------LL 143
+ L ++ V + V+++D V + V AV RFL K L+
Sbjct: 1 LLSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELV 60
Query: 144 AAT---TLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVR 195
LR V+GT + EI +R+ + +Q + G++++ IKD+
Sbjct: 61 KEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDIT 115
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 33.9 bits (78), Expect = 0.15
Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 74/243 (30%)
Query: 66 IVQEYERAVIFRLGRV-REGGPR----GPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMS 120
+V+E ER ++ R G+V R+ + PGL F +P I+ +D R + D ++
Sbjct: 22 VVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVT 81
Query: 121 KDSVTLHVDAVVYYRRFLRKRLLAAT------------------TLRNVLGTRNLAEILS 162
K+ L VD+ + +R R AT LR+ +G ++ +I++
Sbjct: 82 KEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVT 141
Query: 163 E---------RESISHAMQANLDHATEPW------------------------------- 182
+ R++++ D P
Sbjct: 142 DSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAAL 201
Query: 183 GVKVERVEIKDVRLPQQLQRA----MAAEAEA-TREGR------AKVIAAEAEMKASRAL 231
G++V V IK + LP ++ A M AE EA R R A+ + A A+ + +R L
Sbjct: 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTL 261
Query: 232 KEA 234
EA
Sbjct: 262 AEA 264
Score = 30.9 bits (70), Expect = 1.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 14 IVQEYERAVIFRLGRV-REGGPR----GPGLFFILPCIDDYAKVDLRTVSFD 60
+V+E ER ++ R G+V R+ + PGL F +P I+ +D R + D
Sbjct: 22 VVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMD 73
>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
Length = 419
Score = 33.3 bits (76), Expect = 0.24
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 23/201 (11%)
Query: 67 VQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTL 126
++E ER V+ R G+ PGL + ID+ V++ V +++ D +
Sbjct: 100 IKEAERGVVTRFGKFSH--LVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVV 157
Query: 127 HVDAVVYYRRFLRKRLLAATT-------------LRNVLGTRNLAEILSE-RESISHAMQ 172
V+ V YR ++ L + T LR V+G + IL+E R I Q
Sbjct: 158 RVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQ 217
Query: 173 ANLDHATEPW--GVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRA 230
L+ P+ G+ + V + R P++++ A +A A RE + I EAE +
Sbjct: 218 RELEETIRPYDMGITLLDVNFQAARPPEEVKAAF-DDAIAARENEQQYI-REAEAYTNEV 275
Query: 231 LKEA---ADVIVESPAALQLR 248
A A I+E A + +
Sbjct: 276 QPRANGQAQRILEEARAYKAQ 296
>gnl|CDD|150189 pfam09432, THP2, Tho complex subunit THP2. The THO complex plays a
role in coupling transcription elongation to mRNA
export. It is composed of subunits THP2, HPR1, THO2 and
MFT1.
Length = 132
Score = 30.9 bits (70), Expect = 0.55
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 316 NLDHATEPWGVKVERVEIKDVRLPQQLQRAMA---AEAEATREGRAKVIAAEAEMKASRA 372
+L E E V + P +LQ + AEA RA+++ E+K R
Sbjct: 14 DLAKQLERSDFSSEVVLVNKWGPPPELQAILKQYDAEAPDIEVLRAELLKYLDEIKMER- 72
Query: 373 LKEAADVIVESPAALQKRLQKI 394
A ++E+ +LQ+ L+++
Sbjct: 73 ----AKYLLENKYSLQETLRQL 90
Score = 30.1 bits (68), Expect = 0.97
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 174 NLDHATEPWGVKVERVEIKDVRLPQQLQRAMA---AEAEATREGRAKVIAAEAEMKASRA 230
+L E E V + P +LQ + AEA RA+++ E+K R
Sbjct: 14 DLAKQLERSDFSSEVVLVNKWGPPPELQAILKQYDAEAPDIEVLRAELLKYLDEIKMER- 72
Query: 231 LKEAADVIVESPAALQLRYLQTLNSISQEKNS 262
A ++E+ +LQ +TL +++E +S
Sbjct: 73 ----AKYLLENKYSLQ----ETLRQLTKEVSS 96
>gnl|CDD|237462 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 31.4 bits (72), Expect = 0.90
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 202 RAMAAEAE-----ATREGRAKVIAAEAEMKASRALKEA 234
RAMA E +E RAKV+ AEAE+ A+ EA
Sbjct: 254 RAMAVALEQEMKAKVQEMRAKVVEAEAEV--PLAMAEA 289
Score = 31.4 bits (72), Expect = 0.90
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 344 RAMAAEAE-----ATREGRAKVIAAEAEMKASRALKEA 376
RAMA E +E RAKV+ AEAE+ A+ EA
Sbjct: 254 RAMAVALEQEMKAKVQEMRAKVVEAEAEV--PLAMAEA 289
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/24 (62%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 282 TRLLAATTLRNVLGTRN-LAEILS 304
TRLLA T + NVLGT N LAE+++
Sbjct: 165 TRLLAITHVSNVLGTENPLAEMIA 188
Score = 30.5 bits (69), Expect = 1.9
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 139 RKRLLAATTLRNVLGTRN-LAEILS 162
R RLLA T + NVLGT N LAE+++
Sbjct: 164 RTRLLAITHVSNVLGTENPLAEMIA 188
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.8 bits (70), Expect = 1.4
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 23/153 (15%)
Query: 112 DVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLG----------------TR 155
+ PP ++S + V +YY R L+ L T
Sbjct: 130 NPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT 189
Query: 156 NLAEILSERESISHAMQAN------LDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAE 209
L+E +++ ++ ++ L+ K+E + + RL ++ A AA A+
Sbjct: 190 LLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK 249
Query: 210 ATREGRAKVIAAEAEMKASRALKEAADVIVESP 242
A RE A AA A +A+ A + +P
Sbjct: 250 A-REAAAAAEAAAARARAAEAKRTGETYKPTAP 281
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 207
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 134 YRRFLRKRLLAAT--TLRNVLGTRNLAEIL--SERESISHAMQANLDHATEPWGVKVERV 189
+ LR ++AA L LA +L + R+ +S A++ L +G+++ V
Sbjct: 133 LEKSLRALIVAALSSALSES----GLAVMLLAANRDELSKAVREALAPWFASFGLELVSV 188
Query: 190 EIKDVRLPQQLQRA 203
I+ + P ++Q+
Sbjct: 189 YIESISYPDEVQKL 202
Score = 30.0 bits (68), Expect = 2.0
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 270 VDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVE 329
+ + + L+ + L +L N R+ +S A++ L +G+++
Sbjct: 134 EKSLRALIVAALSSALSESGLAVMLLAAN-------RDELSKAVREALAPWFASFGLELV 186
Query: 330 RVEIKDVRLPQQLQRA 345
V I+ + P ++Q+
Sbjct: 187 SVYIESISYPDEVQKL 202
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 31.1 bits (71), Expect = 1.5
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 326 VKVERVEIKDVRLPQQ---LQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVE 382
K E K + L + ++ + + AEA E A++I AEAE++ + +A + E
Sbjct: 692 AKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAE 751
Query: 383 SPAALQKRLQKIQTNY 398
+ ++ Q+++ Y
Sbjct: 752 AELEKLRKRQELELEY 767
Score = 28.8 bits (65), Expect = 7.5
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 184 VKVERVEIKDVRLPQQ---LQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVE 240
K E K + L + ++ + + AEA E A++I AEAE++ + +A + E
Sbjct: 692 AKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAE 751
Query: 241 SPAALQ-------LRYLQTLNSISQEK 260
+ L Y Q N + K
Sbjct: 752 AELEKLRKRQELELEYEQAQNELEIAK 778
>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases,
includes Ras-related GTP-binding proteins A and B. RagA
and RagB are closely related Rag GTPases (ras-related
GTP-binding protein A and B) that constitute a unique
subgroup of the Ras superfamily, and are functional
homologs of Saccharomyces cerevisiae Gtr1. These domains
function by forming heterodimers with RagC or RagD, and
similarly, Gtr1 dimerizes with Gtr2, through the
carboxy-terminal segments. They play an essential role
in regulating amino acid-induced target of rapamycin
complex 1 (TORC1) kinase signaling, exocytic cargo
sorting at endosomes, and epigenetic control of gene
expression. In response to amino acids, the Rag GTPases
guide the TORC1 complex to activate the platform
containing Rheb proto-oncogene by driving the
relocalization of mTORC1 from discrete locations in the
cytoplasm to a late endosomal and/or lysosomal
compartment that is Rheb-enriched and contains Rab-7.
Length = 286
Score = 30.6 bits (70), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 8 LVHKFGIVQEYERAVIFRLGRVRE 31
L+HK +VQE ER +F + +E
Sbjct: 117 LIHKMDLVQEDEREAVFE-RKEKE 139
>gnl|CDD|145995 pfam03148, Tektin, Tektin family. Tektins are cytoskeletal
proteins. They have been demonstrated in such cellular
sites as centrioles, basal bodies, and along ciliary and
flagellar doublet microtubules. Tektins form unique
protofilaments, organised as longitudinal polymers of
tektin heterodimers with axial periodicity matching
tubulin. Tektin polypeptides consist of several
alpha-helical regions that are predicted to form coiled
coils. Indeed, tektins share considerable structural
similarities with intermediate filament proteins.
Possible functional roles for tektins are: stabilisation
of tubulin protofilaments; attachment of A and B-tubules
in ciliary/flagellar microtubule doublets and C-tubules
in centrioles; binding of axonemal components.
Length = 384
Score = 30.6 bits (70), Expect = 1.9
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 363 AEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLR 403
AE E AS L+E D I+ A R Q N F+ R
Sbjct: 213 AERERAASAQLRELIDSILAQ-TANDLRAQADAVNEAFRKR 252
>gnl|CDD|221431 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This
protein is found in bacteria. Proteins in this family
are about 330 amino acids in length. The operon from
which this protein is derived confers immunity for the
host species to a broad range of antibacterial
compounds, unlike the specific immunity proteins that
are linked to and co-regulated with their
antibiotic-synthesis proteins.
Length = 318
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 202 RAMAAEAE-----ATREGRAKVIAAEAEMKASRALKEA 234
RAMA E +E RAKV+ AEAE+ +A+ EA
Sbjct: 250 RAMAVAREQEMKAKVQEMRAKVVEAEAEV--PKAMAEA 285
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 344 RAMAAEAE-----ATREGRAKVIAAEAEMKASRALKEA 376
RAMA E +E RAKV+ AEAE+ +A+ EA
Sbjct: 250 RAMAVAREQEMKAKVQEMRAKVVEAEAEV--PKAMAEA 285
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 29.5 bits (67), Expect = 3.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 213 EGRAKVIAAEAE----MKASRALKEAADVIVESPAA 244
EGRA+V+A E E + A+ A E DV V AA
Sbjct: 190 EGRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAA 225
Score = 29.5 bits (67), Expect = 3.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 355 EGRAKVIAAEAE----MKASRALKEAADVIVESPAA 386
EGRA+V+A E E + A+ A E DV V AA
Sbjct: 190 EGRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAA 225
>gnl|CDD|153080 cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-coenzyme A
(HMG-CoA) reductase (HMGR).
Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase
(HMGR) is a tightly regulated enzyme, which catalyzes
the synthesis of coenzyme A and mevalonate in isoprenoid
synthesis. In mammals, this is the rate limiting
committed step in cholesterol biosynthesis. Bacteria,
such as Pseudomonas mevalonii, which rely solely on
mevalonate for their carbon source, catalyze the reverse
reaction, using an NAD-dependent HMGR to deacetylate
mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There
are two classes of HMGR: class I enzymes which are found
predominantly in eukaryotes and contain N-terminal
membrane regions and class II enzymes which are found
primarily in prokaryotes and are soluble as they lack
the membrane region. With the exception of Archaeoglobus
fulgidus, most archeae are assigned to class I, based on
sequence similarity of the active site, even though they
lack membrane regions. Yeast and human HMGR are
divergent in their N-terminal regions, but are conserved
in their active site. In contrast, human and bacterial
HMGR differ in their active site architecture. While the
prokaryotic enzyme is a homodimer, the eukaryotic enzyme
is a homotetramer.
Length = 376
Score = 29.6 bits (66), Expect = 3.4
Identities = 48/267 (17%), Positives = 80/267 (29%), Gaps = 42/267 (15%)
Query: 73 AVIFRLGRVREGGPRGP----GLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHV 128
A + R G P + +L AK+ L D + KD + +
Sbjct: 87 AKLARAGGGFTTSSSAPLMHAQVQIVLIQDPLNAKLSLLRSGKDEIIELANRKDQLLNSL 146
Query: 129 DA--VVYYRRFLRKRLLAATTLR-------NVLGTRNLAEILSERESISHAMQANLDHAT 179
L+A + N++ T + E+ + MQ L +
Sbjct: 147 GGGCRDIEVHTFGPMLVAHLIVDVGDAMGANMINT-MAEAVAPLMEAYTGGMQVRLRSLS 205
Query: 180 EPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRAL---KEAAD 236
G R+ R+ Q EA EG A +A + + RA K +
Sbjct: 206 NLTGDG--RLARAQARITPQQLETAEFSGEAVIEGILDAYAFKAAVDSYRAATHNKGIMN 263
Query: 237 VIV------------ESPAALQLRYLQTLNSISQEKNS------TIIFPIPVDIISTFMK 278
+ A + + EK++ T+ +PV ++ K
Sbjct: 264 GVDPLIVACGQDWRAVEVGAHAYACRHYGSLTTWEKDNNGHLVITLEMSMPVGLVGGATK 323
Query: 279 NHSTRLLAATTLR--NVLGTRNLAEIL 303
H LA +LR V + LA I
Sbjct: 324 TH---PLAQASLRILGVKTAQALARIA 347
>gnl|CDD|227786 COG5499, COG5499, Predicted transcription regulator containing HTH
domain [Transcription].
Length = 120
Score = 27.9 bits (62), Expect = 4.8
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 241 SPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTR-NL 299
+ L TL + K+ I P PV++I T M + L L N +G++ +
Sbjct: 33 LLELDRADILATLIEAYEFKHYPIAAPDPVEVIRTLMDQYG---LTLADLANEIGSKSRV 89
Query: 300 AEILSERESISHAMQANLDHA---TEPWGVKVE 329
+ ILS R +++ L+H + +G+ +
Sbjct: 90 SNILSGRRALT------LEHIKKLHQRFGIPAD 116
>gnl|CDD|227201 COG4864, COG4864, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 328
Score = 29.1 bits (65), Expect = 5.3
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 296 TRNLAEILSERESISHAMQAN-LDHAT--EPWGVKVERVEI-KDVRLPQQLQRAMA---- 347
+ ++L +SIS + LD T E + + V+I K++ Q ++A A
Sbjct: 185 SDEHTKVLENPDSISKTVLEKGLDSGTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNI 244
Query: 348 AEAEATREGRAKVIAAEAEMKASRALKEAADVIVES--PAALQKRLQK 393
A+A+A E RA +A E EM+A A V E+ P AL + L++
Sbjct: 245 AQAKAE-ERRAMAVALEQEMRARVEEMRAKVVEAEAEVPLALSEALRE 291
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 28.9 bits (65), Expect = 5.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 347 AAEAEATREGRAKVIAAEAEM--KASRALKEAADVIVESPAALQKRLQKIQ 395
AA+A+A + +AK+ E K + L+E + E A + RL+K+Q
Sbjct: 53 AAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 29.1 bits (66), Expect = 5.8
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 220 AAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMK- 278
E + A AL ++ L+ L+ LN I ++ + D+I +K
Sbjct: 259 EPELIVLAVNALG---RLLSSPDENLRYVALRNLNKILEKHPPAVQHL---DLIIFCLKT 312
Query: 279 --NHSTRLLAATTLRNVLGTRNLAEILSE 305
+ S RL A L ++ N+ EI+ E
Sbjct: 313 DDDISIRLRALDLLYKLVDESNVKEIVKE 341
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.1 bits (65), Expect = 6.0
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 334 KDVRLPQQLQRAMAAEAEATREGRAKVIAAE------AEMKASRALKEAADVIVESPAAL 387
KD + Q +++ + +EA++ R K +A E E A+RA +AA E +L
Sbjct: 473 KDKQSMQSMEKRLKSEADS-RVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESL 531
Query: 388 QKRLQKIQT 396
++ Q ++
Sbjct: 532 KQAKQDLEM 540
>gnl|CDD|226711 COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin
family [Amino acid transport and metabolism].
Length = 345
Score = 28.3 bits (63), Expect = 8.1
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 249 YLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERES 308
+ + I ++ + I +S FM A T N G R + + + +
Sbjct: 141 PILFIQQIPGNRDVYTVDDINQQYLSEFMG-------ALATAINQSGVR-FSFLTANQME 192
Query: 309 ISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM 346
+S M LD +G+ V+ ++ + P + Q +
Sbjct: 193 LSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALI 230
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2.
This family includes TATA binding protein (TBP)
associated factor 2 (TAF2, TBP-associated factor
TAFII150, transcription initiation factor TFIID subunit
2, RNA polymerase II TBP-associated factor subunit B),
and has homology to the aminopeptidase N (APN)
subfamily, belonging to the M1 gluzincin family. TAF2 is
part of the TFIID multidomain subunit complex essential
for transcription of most protein-encoded genes by RNA
polymerase II. TAF2 is known to interact with the
initiator element (Inr) found at the transcription start
site of many genes, thus possibly playing a key role in
promoter binding as well as start-site selection. Image
analysis has shown TAF2 to form a complex with TAF1 and
TBP, inferring its role in promoter recognition.
Peptidases in the M1 family bind a single catalytic zinc
ion which is tetrahedrally co-ordinated by three amino
acid ligands and a water molecule that forms the
nucleophile on activation during catalysis. TAF2,
however, does not seem to contain any of the active site
residues.
Length = 507
Score = 28.5 bits (64), Expect = 8.2
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 24/79 (30%)
Query: 61 VPPQEIVQEYERAVI-----FRLGRVREG----GP-----RGPGLF----------FILP 96
VP + E+ V+ F + + + G GP R P +F P
Sbjct: 103 VPKEVRKLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARCWFP 162
Query: 97 CIDDYAKVDLRTVSFDVPP 115
C+DD +++ + F VP
Sbjct: 163 CVDDPSQLCTWELEFTVPA 181
>gnl|CDD|181202 PRK08027, flgL, flagellar hook-associated protein FlgL; Reviewed.
Length = 317
Score = 28.2 bits (63), Expect = 8.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 206 AEAEATREGRAKVIAAEAEMKASRALKEAADVI--VESPAALQLRYLQTLNSISQEK 260
A ++A +E AA A K +R LK + + + V + QL L++L+S+ ++
Sbjct: 216 AGSDADKET-----AAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDR 267
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase.
Length = 151
Score = 27.6 bits (62), Expect = 9.5
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 164 RESISHAM-QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA-EATREGRAKVIAA 221
+ S + + + + E G +VE +++ D+ LP + A + +E R K+ AA
Sbjct: 12 KGSNTRKLAEWAAELLEEA-GAEVELIDLADLPLPLYDEDLEACGDPDDVQELREKIAAA 70
Query: 222 EA 223
+
Sbjct: 71 DG 72
Score = 27.6 bits (62), Expect = 9.5
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 306 RESISHAM-QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEA-EATREGRAKVIAA 363
+ S + + + + E G +VE +++ D+ LP + A + +E R K+ AA
Sbjct: 12 KGSNTRKLAEWAAELLEEA-GAEVELIDLADLPLPLYDEDLEACGDPDDVQELREKIAAA 70
Query: 364 EA 365
+
Sbjct: 71 DG 72
>gnl|CDD|221366 pfam11996, DUF3491, Protein of unknown function (DUF3491). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 286 to 3225 amino acids in length.
This protein is found associated with pfam04488. This
protein is found associated with pfam04488.
Length = 934
Score = 28.5 bits (64), Expect = 9.8
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 250 LQTLNSISQEKNSTIIFPI----PVDIISTFMKNHSTRLLAATTLRNVLG--TRNLAEIL 303
+ T++ + EK PI P I+ +NH L LG T NLAEI+
Sbjct: 646 MDTISEKTLEKE---AKPILASDPHRFINPSYRNH---------LELFLGEGTLNLAEIV 693
Query: 304 SERESISHAMQANLDHAT 321
E S S +++ D T
Sbjct: 694 QEFSSTSKIVESQEDKTT 711
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.368
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,536,163
Number of extensions: 2384449
Number of successful extensions: 3457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3330
Number of HSP's successfully gapped: 168
Length of query: 457
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 357
Effective length of database: 6,502,202
Effective search space: 2321286114
Effective search space used: 2321286114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)