RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9223
(457 letters)
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 262 bits (672), Expect = 1e-86
Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 13/178 (7%)
Query: 98 IDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR------------RFLRK-RLLA 144
+ VDLRT DVP QE ++KD+V + V+AVVY+R ++ ++
Sbjct: 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQIS 62
Query: 145 ATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM 204
TTLR+V+G +L E+LSER+ ++ +Q +D AT+PWG+KV VEIKDV LP +Q+AM
Sbjct: 63 QTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM 122
Query: 205 AAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNS 262
A +AEA RE RA++ AEAE +A+ L+EAA++I E P ALQLR LQT++ ++ +K++
Sbjct: 123 ARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKSN 180
Score = 201 bits (514), Expect = 5e-63
Identities = 62/139 (44%), Positives = 92/139 (66%), Gaps = 13/139 (9%)
Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL 338
+T ++ TTLR+V+G +L E+LSER+ ++ +Q +D AT+PWG+KV VEIKDV L
Sbjct: 55 IMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVEL 114
Query: 339 PQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNY 398
P +Q+AMA +AEA RE RA++ AEAE +A+ L+EAA++I E P AL
Sbjct: 115 PAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMAL----------- 163
Query: 399 LFQLRYLQTLQSISQEKNS 417
QLR LQT+ ++ +K++
Sbjct: 164 --QLRTLQTISDVAGDKSN 180
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 185 bits (472), Expect = 1e-57
Identities = 81/131 (61%), Positives = 96/131 (73%), Gaps = 13/131 (9%)
Query: 93 FILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR------------RFLRK 140
P D AKVD+RT+SFD+PPQEV++KDSVT+ VD VVYYR
Sbjct: 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSA 62
Query: 141 -RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQ 199
RLLA TTLRN LGT+NL++ILS+RE I+H MQ+ LD AT+ WG+KVERVEIKDV+LP Q
Sbjct: 63 TRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQ 122
Query: 200 LQRAMAAEAEA 210
LQRAMAAEAEA
Sbjct: 123 LQRAMAAEAEA 133
Score = 126 bits (318), Expect = 4e-35
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL 338
+ +TRLLA TTLRN LGT+NL++ILS+RE I+H MQ+ LD AT+ WG+KVERVEIKDV+L
Sbjct: 60 DSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKL 119
Query: 339 PQQLQRAMAAEAEA 352
P QLQRAMAAEAEA
Sbjct: 120 PVQLQRAMAAEAEA 133
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 130 bits (329), Expect = 6e-37
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKR-------------LLAATTLR 149
VDLR DVPPQEV+ KD+V + VDAVVYY+ + LA T LR
Sbjct: 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLR 63
Query: 150 NVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQ 198
++G L E LS R+ I+ ++ LD T+ WGVK+ RVEI+ + P+
Sbjct: 64 AIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPK 112
Score = 90.3 bits (225), Expect = 3e-22
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 280 HSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLP 339
+ LA T LR ++G L E LS R+ I+ ++ LD T+ WGVK+ RVEI+ + P
Sbjct: 52 MAIVKLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPP 111
Query: 340 Q 340
+
Sbjct: 112 K 112
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 108 bits (271), Expect = 3e-28
Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 100 DYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR-------------RFLRKRL---- 142
++ L ++ ++V + + V L V V + +FL K +
Sbjct: 6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIK 65
Query: 143 -----LAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLP 197
LR++LGT + +I +R+ + ++ G+++ IKDV
Sbjct: 66 NVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDK 125
Query: 198 QQLQRAMAAEAEATR 212
++ +
Sbjct: 126 VDYLSSLGKTQTSGP 140
Score = 73.7 bits (181), Expect = 6e-16
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL 338
+ LR++LGT + +I +R+ + ++ G+++ IKDV
Sbjct: 65 KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYD 124
Query: 339 PQQLQRAMAAEAEATR 354
++ +
Sbjct: 125 KVDYLSSLGKTQTSGP 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 67/464 (14%), Positives = 138/464 (29%), Gaps = 171/464 (36%)
Query: 109 VSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESIS 168
+ F+ + KD +++ DA V F K + +++L + I+ ++++S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDM--PKSILSKEEIDHIIMSKDAVS 62
Query: 169 H----------------------AMQANLDHATEPWGVK--------------------- 185
++ N P +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 186 --------VERVE-IKDVR--LPQQLQRA-------MAAEAEATREGRAK-VIAAEAEMK 226
V R++ +R L +L+ A + G K +A +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVL--------GSGKTWVALDV-CL 172
Query: 227 ASRALKEAADVI-------VESPAALQLRYLQTLNSI---SQEKNSTIIFPIPVDI---- 272
+ + + I SP + L LQ L + S I + I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 273 --ISTFM--KNHSTRLLAATTLRNV----------------LGTRN--LAEILSERESIS 310
+ + K + LL L NV L TR + + LS +
Sbjct: 232 AELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 311 HAMQANLDHATEPWGVKV--ERVEIKDVRLPQQLQ----RAMAAEAEATREGRA-----K 359
++ + T + + ++ + LP+++ R ++ AE+ R+G A K
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 360 VIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTI 419
+ + K + ++ + +V+ PA +K + L
Sbjct: 349 HVNCD---KLTTIIESSLNVL--EPAEYRKMFDR-----LS------------------- 379
Query: 420 VFP----IPLRYLQTL--NSISQEKNSTIIFPIPVDIISTFMKK 457
VFP IP L + + I + + +++ K
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSD---------VMVVVNKLHKY 414
Score = 35.6 bits (81), Expect = 0.037
Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 78/242 (32%)
Query: 6 LNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFIL--PCIDDYAKVDLRTVSFDVPP 63
+N +HK+ +V++ + + P ++ L ++YA L
Sbjct: 408 VNKLHKYSLVEKQPKESTISI----------PSIYLELKVKLENEYA---LH-------- 446
Query: 64 QEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDY--------AKVDLRTVSFDVPP 115
+ IV Y + + + P P +D Y K +
Sbjct: 447 RSIVDHY------NIPKTFDSDDLIP------PYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 116 QEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGT--------RNLAEILSERESI 167
+ +D RFL +++ +T N G+ + + + +
Sbjct: 495 M---------VFLDF-----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 168 SHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKA 227
+ + + + D+ L+ A+ AE EA I EA +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDL-----LRIALMAEDEA--------IFEEAHKQV 587
Query: 228 SR 229
R
Sbjct: 588 QR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 85/522 (16%), Positives = 146/522 (27%), Gaps = 198/522 (37%)
Query: 56 TVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFF-ILP------CIDD--YAKVDL 106
VP A F +++E F ILP DD +L
Sbjct: 17 EHVLLVPT---------ASFFIASQLQEQ-------FNKILPEPTEGFAADDEPTTPAEL 60
Query: 107 RT-----VSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEIL 161
VS V P +V D V F L ++
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLC-----LTEFEN----------CYLEGNDI---- 101
Query: 162 SERESISHAMQANLDHATEPWGVKVERVEIKD-VRLPQQLQRAMAAEA-----EATREGR 215
HA+ A L + VK + + IK+ + +R ++ A EG
Sbjct: 102 -------HALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 216 AKVIA-------AEA---EM----KASRALKEAADVIVESPAALQLRYLQTLNSISQEKN 261
A+++A + E+ + L D+I S L I +
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVL--VGDLIKFSAETLS-------ELIRTTLD 204
Query: 262 STIIFPIPVDIISTFMKNHSTR--------------LLAATTL------RNVLGTR--NL 299
+ +F ++I+ +++N S L+ L +LG L
Sbjct: 205 AEKVFTQGLNILE-WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 300 AEILS----ERES------ISHA-----MQANLDHATEP--W-GVKVERVEIKDVRLPQQ 341
L + I+ ++ A + GV+ P
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA------YPNT 317
Query: 342 -LQRAMAAEAEATREG------------RAKVIAA--------EAEMKASRALKEAADVI 380
L ++ ++ EG + +V A + +L A +
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 381 VES--PAALQ---KRLQKI-------QTNYLFQLRYLQTLQSISQEKNSTIVF-----PI 423
V S P +L L+K Q+ F S+ K + F P+
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-----------SERK---LKFSNRFLPV 423
Query: 424 --PL--RYLQ-TLNSISQE-KNSTIIFP-----IPVDIISTF 454
P L + I+++ + + F IPV TF
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTF 463
Score = 44.3 bits (104), Expect = 8e-05
Identities = 66/357 (18%), Positives = 107/357 (29%), Gaps = 127/357 (35%)
Query: 116 QEV-MSKDSVTLHVDAVVYYRRF-----LRKRLLAATTLRNVLGTRNLAEILSERESISH 169
QE M D Y+ + R A ++ G SI
Sbjct: 1627 QEQGMGMD----------LYKTSKAAQDVWNR--ADNHFKDTYG-----------FSILD 1663
Query: 170 AMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASR 229
+ N P + + K R+ + AM E + + + I E ++
Sbjct: 1664 IVINN------PVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHST- 1715
Query: 230 ALKEAADVIVESPA-ALQL-RYLQ---TLNSIS-----QEKNSTIIFPIPVDIISTFMKN 279
S L ++ Q TL + + K IP D +TF
Sbjct: 1716 ------SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-----GLIPAD--ATFA-G 1761
Query: 280 HSTRL-----LAATTLRNVLGTRNLAEILSER-ESISHAMQANLDHATEPWGVKVERVEI 333
HS L LA+ +V+ +L E++ R ++ A V R E+
Sbjct: 1762 HS--LGEYAALASLA--DVMSIESLVEVVFYRGMTMQVA---------------VPRDEL 1802
Query: 334 KDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQK 393
+ M A GR ++ EA +VE L +
Sbjct: 1803 G------RSNYGMIA----INPGRVAASFSQ----------EALQYVVERVGKRTGWLVE 1842
Query: 394 IQTNYLF---Q------LRYLQTLQSI---SQEKNSTIVFPIPLRYLQTLNSISQEK 438
I NY Q LR L T+ ++ + + I + LQ S+S E+
Sbjct: 1843 I-VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK------IDIIELQK--SLSLEE 1890
Score = 37.7 bits (87), Expect = 0.010
Identities = 46/304 (15%), Positives = 97/304 (31%), Gaps = 93/304 (30%)
Query: 40 FFILPCIDDYAKVDLRTVSFDVPP-QEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCI 98
F IL + + T+ F + I + Y A+IF + +G + +F I
Sbjct: 1659 FSILDIVINNPVN--LTIHFGGEKGKRIRENYS-AMIFE--TIVDGKLKTEKIF---KEI 1710
Query: 99 DDYAKVDLRTVSFDVPPQEVMSKDSVT---LHVDAVVYYRRFLRKR-------------L 142
++ + +F + ++S T L + + L+ + L
Sbjct: 1711 NE----HSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFED-LKSKGLIPADATFAGHSL 1764
Query: 143 -----LAATTLRNVLGTRNLAEILSER-ESISHAMQANLDHATEPWGVKVERVEIKDVRL 196
LA+ +V+ +L E++ R ++ A V R E+
Sbjct: 1765 GEYAALASLA--DVMSIESLVEVVFYRGMTMQVA---------------VPRDELG---- 1803
Query: 197 PQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQT--LN 254
+ M A GR ++ EA +VE ++ N
Sbjct: 1804 --RSNYGMIA----INPGRVAASFSQ----------EALQYVVERVGKRTGWLVEIVNYN 1847
Query: 255 SISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESIS-HAM 313
+N + + L T + N + + + +I+ ++S+S +
Sbjct: 1848 V----ENQQY-------VAA----GDLRALDTVTNVLNFIKLQKI-DIIELQKSLSLEEV 1891
Query: 314 QANL 317
+ +L
Sbjct: 1892 EGHL 1895
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.2 bits (80), Expect = 0.045
Identities = 37/242 (15%), Positives = 85/242 (35%), Gaps = 16/242 (6%)
Query: 190 EIKDVRLPQQLQRAMAAE---AEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQ 246
E+K+ P + + + +A + ++V A A + K +A +I + +
Sbjct: 548 ELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFE 607
Query: 247 LRYLQTLNSISQEK-NSTIIFP------IPVDIISTFMKNHSTRLLAATTLRNVL-GTRN 298
+ + K +FP VD+ S + TR +++ + T N
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667
Query: 299 LAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRA-----MAAEAEAT 353
E ++ E+ +A + + E + + L + A+AEA
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 354 REGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQ 413
A I E + ++ +A + E+ K++++++ Y L+ ++
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Query: 414 EK 415
Sbjct: 788 AN 789
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.12
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 204 MAAEAEATR---EGRAKVIAA--EAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQ 258
+ E E+ R E + K + A + +E A L+ + + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK------KDLEEWNQRQSEQVEK 133
Query: 259 EKNST 263
K +
Sbjct: 134 NKINN 138
Score = 30.1 bits (67), Expect = 0.91
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 346 MAAEAEATR---EGRAKVIAA--EAEMKASRALKEAAD 378
+ E E+ R E + K + A + +E A
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
>2pfz_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Length = 301
Score = 33.0 bits (76), Expect = 0.18
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 337 RLPQQLQRA-MAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKI 394
L Q+A A A+A G + K L + I+ A L+ L ++
Sbjct: 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKE--QLAKNGMAIIAPTAELKSGLTEV 275
Score = 28.0 bits (63), Expect = 6.5
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 195 RLPQQLQRA-MAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQ 246
L Q+A A A+A G + K L + I+ A L+
Sbjct: 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKE--QLAKNGMAIIAPTAELK 269
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Length = 301
Score = 32.7 bits (75), Expect = 0.21
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 337 RLPQQLQRA-MAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKI 394
RLP ++++A + A A+A G A E+ L + P L K LQ I
Sbjct: 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTD--TLARNGMSVEPLPPQLAKELQAI 276
>2hb0_A CFA/I fimbrial subunit E; CFAE, adhesin, ETEC, traveler'S disease,
cell adhesion; 2.30A {Escherichia coli}
Length = 369
Score = 29.3 bits (65), Expect = 2.6
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 80 RVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVV 132
R ++ + G F++ DD ++ +S + + + + L+++
Sbjct: 231 RFQDDNSKSDGKFYLKKINDDSKELVYT-LSLLLAGKNLTPTNGQALNINTAS 282
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein,
trap, sugar transport; HET: SLB; 1.05A {Haemophilus
influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A*
2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Length = 312
Score = 29.2 bits (66), Expect = 2.8
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 337 RLPQQLQRAMAAEA-EATREGRAKVIAAEAEMKASRALKEA-ADVIVESPAALQKRLQKI 394
LP+ LQ+ + A A + + E ++ ++ + ++ ++
Sbjct: 225 ELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVT--FFEKQGVKITHPDLVPFKESMKPY 282
Query: 395 QTNY 398
+
Sbjct: 283 YAEF 286
>3f83_A Fusion of the minor pilin CFAE and major pilin CF; ETEC, E. coli,
CFA/I, CFAB, diarrhea, fimbriae, projection, fimbrium,
cell adhesion; 2.30A {Escherichia coli}
Length = 519
Score = 29.0 bits (64), Expect = 3.6
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 80 RVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVV 132
R ++ + G F++ DD ++ +S + + + + L+++
Sbjct: 231 RFQDDNSKSDGKFYLKKINDDSKELVYT-LSLLLAGKNLTPTNGQALNINTAS 282
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 27.8 bits (61), Expect = 5.2
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 340 QQLQRAMAAEAEATREGRAKVIAAEAEMKASRALK----EAADVIVESPAALQKRLQKIQ 395
Q+ T R ++I+ E A + + + +L ++L + +
Sbjct: 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133
Query: 396 TNYLFQLR 403
+
Sbjct: 134 VKRDVAMA 141
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 28.4 bits (64), Expect = 5.2
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 357 RAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQE 414
RA V+AA +E+ A+ A AA +++ + A Y +L L Q
Sbjct: 119 RAAVVAATSELAAAEAESVAARLMISTSIA---------NAY-AELARLYANQETVHA 166
Score = 27.7 bits (62), Expect = 9.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 215 RAKVIAAEAEMKASRALKEAADVIVESPAA---LQLRYLQTLNSISQE 259
RA V+AA +E+ A+ A AA +++ + A +L L
Sbjct: 119 RAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHA 166
>2xvo_A SSO1725; structural genomics; 2.08A {Sulfolobus solfataricus}
Length = 192
Score = 27.4 bits (60), Expect = 7.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 254 NSISQEKNSTIIFPIPVDIISTF 276
N+I EKN+ I+F IP D+++ F
Sbjct: 165 NTIIIEKNTGIVFKIPNDMLNIF 187
Score = 27.4 bits (60), Expect = 7.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 432 NSISQEKNSTIIFPIPVDIISTF 454
N+I EKN+ I+F IP D+++ F
Sbjct: 165 NTIIIEKNTGIVFKIPNDMLNIF 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.368
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,909,878
Number of extensions: 439048
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 66
Length of query: 457
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,993,456
Effective search space: 1437644160
Effective search space used: 1437644160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)