RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9223
         (457 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score = 94.4 bits (234), Expect = 1e-23
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 22/133 (16%)

Query: 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR-------------RFLRK--------- 140
           ++ L  ++     ++V + + V L V  V   +             +FL K         
Sbjct: 9   RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVV 68

Query: 141 RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQL 200
                  LR++LGT  + +I  +R+  +  ++          G+++    IKDV      
Sbjct: 69  LQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDY 128

Query: 201 QRAMAAEAEATRE 213
             ++     +   
Sbjct: 129 LSSLGKTQTSGPS 141



 Score = 69.0 bits (168), Expect = 9e-15
 Identities = 12/77 (15%), Positives = 28/77 (36%)

Query: 279 NHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRL 338
            +         LR++LGT  + +I  +R+  +  ++          G+++    IKDV  
Sbjct: 65  KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYD 124

Query: 339 PQQLQRAMAAEAEATRE 355
                 ++     +   
Sbjct: 125 KVDYLSSLGKTQTSGPS 141


>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 182

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 4/44 (9%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 413 QEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMK 456
             +   +           L++ + ++++ + F      ++T+M 
Sbjct: 138 PLRERQVAEKQLAALGDILSAYAADRSAPMDF-----ALNTYMS 176


>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain
           {Methanopyrus kandleri [TaxId: 2320]}
          Length = 291

 Score = 27.4 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 28  RVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAV 74
           R  +  P  P L+ IL     Y +VDL  V+ D  P E+  E+ER +
Sbjct: 129 RAVKRNPLQPALYRILV---RYGRVDLMPVTVDEVPPEMAGEFERLI 172


>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 596

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 203 AMAAEAEATREGRAKVIAAEAEMK---ASRALKEAADVIVE 240
           AMA +A     G   V   + E K         + A+V+ E
Sbjct: 6   AMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAE 46



 Score = 27.3 bits (59), Expect = 4.7
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 345 AMAAEAEATREGRAKVIAAEAEMK---ASRALKEAADVIVE 382
           AMA +A     G   V   + E K         + A+V+ E
Sbjct: 6   AMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAE 46


>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia
           coli [TaxId: 562]}
          Length = 138

 Score = 26.3 bits (57), Expect = 5.6
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 382 ESPAALQKRLQKIQTNYLFQLRYLQTLQ 409
           E P A++K LQ+   +     R    + 
Sbjct: 4   EDPVAIRKALQECMQHNFSVFREGDAMA 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,584,544
Number of extensions: 73132
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 15
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)