BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9225
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|A Chain A, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 132
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
C+ IT+P C+ I YN T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSMY P
Sbjct: 8 CQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 67
Query: 98 VC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
+C ++ +PPCR++C A+ GC LM +GF WP+ C + P PD+LC+
Sbjct: 68 ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP-EQGNPDTLCM 122
>pdb|1IJY|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
Frizzled 8 (Mfz8)
pdb|1IJY|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
Frizzled 8 (Mfz8)
Length = 130
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
C+ IT+P C+ I Y T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSMY P
Sbjct: 10 CQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 69
Query: 98 VC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
+C ++ +PPCR++C A+ GC LM +GF WP+ C + P PD+LC+
Sbjct: 70 ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP-EQGNPDTLCM 124
>pdb|1IJX|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
pdb|1IJX|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
pdb|1IJX|C Chain C, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
pdb|1IJX|D Chain D, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
pdb|1IJX|E Chain E, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
pdb|1IJX|F Chain F, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
Frizzled- Related Protein 3 (Sfrp-3;fzb)
Length = 127
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
A CE + IP C+ + + T MPN L HS Q +A + Q+ L+ CSPDL FFLC+MY
Sbjct: 3 AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 62
Query: 96 APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG----PDS 149
AP+CTI I PC+++C AR GCE ++ + WPE+ C + P+ G P++
Sbjct: 63 APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYDRGVCISPEA 122
Query: 150 LCVGD 154
+ D
Sbjct: 123 IVTAD 127
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 206 LDYELKVGDKVEKNCGAPCDGMFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDR 265
LD EL+ + +K C + + R + ++S L + ++T +++ +
Sbjct: 78 LDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQ 137
Query: 266 FRYPERPIIFLSVCYLMVSITYIIGFMSGDKISC 299
+ Y P+ L ++ + ++G+ SGD I C
Sbjct: 138 YTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFC 171
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 77 PLVKVKCSPDLQFFLCSMYAPVCTILERAIPPC 109
PL++ + PD +++ S++ P C L+R + C
Sbjct: 338 PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERC 370
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 77 PLVKVKCSPDLQFFLCSMYAPVCTILERAIPPC 109
PL++ + PD +++ S++ P C L+R + C
Sbjct: 348 PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERC 380
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 77 PLVKVKCSPDLQFFLCSMYAPVCTILERAIPPC 109
PL++ + PD +++ S++ P C L+R + C
Sbjct: 332 PLLQKRPKPDERYYSSSIWGPTCDGLDRIVERC 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,005,677
Number of Sequences: 62578
Number of extensions: 479258
Number of successful extensions: 803
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 8
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)