Query psy9225
Match_columns 350
No_of_seqs 169 out of 567
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:05:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3577|consensus 100.0 1.6E-54 3.4E-59 447.7 18.7 257 31-301 36-294 (556)
2 cd07465 CRD_FZ1 Cysteine-rich 100.0 7.4E-40 1.6E-44 278.5 7.5 122 35-158 2-123 (127)
3 cd07466 CRD_FZ7 Cysteine-rich 100.0 7E-40 1.5E-44 277.9 6.9 122 35-158 2-123 (125)
4 cd07463 CRD_FZ9 Cysteine-rich 100.0 1.1E-39 2.3E-44 277.5 6.8 123 34-157 1-124 (127)
5 cd07464 CRD_FZ2 Cysteine-rich 100.0 1.2E-39 2.5E-44 277.1 7.0 122 35-158 2-123 (127)
6 cd07441 CRD_SFRP3 Cysteine-ric 100.0 1.1E-39 2.4E-44 276.6 6.4 120 35-157 1-122 (126)
7 cd07460 CRD_FZ5 Cysteine-rich 100.0 1.4E-39 3.1E-44 276.6 7.1 123 35-158 2-125 (127)
8 cd07462 CRD_FZ10 Cysteine-rich 100.0 1.8E-39 4E-44 275.9 7.4 123 35-158 2-125 (127)
9 cd07442 CRD_SFRP4 Cysteine-ric 100.0 1.3E-39 2.8E-44 276.5 5.8 120 35-157 2-123 (127)
10 cd07461 CRD_FZ8 Cysteine-rich 100.0 3.2E-39 7E-44 274.0 6.6 121 35-156 2-123 (125)
11 cd07458 CRD_FZ1_like Cysteine- 100.0 3.5E-39 7.6E-44 271.8 6.5 118 36-155 1-118 (119)
12 cd07457 CRD_FZ9_like Cysteine- 100.0 4.7E-39 1E-43 271.8 6.6 119 36-155 1-120 (121)
13 cd07449 CRD_FZ3 Cysteine-rich 100.0 8.4E-39 1.8E-43 271.3 7.5 120 36-156 3-122 (127)
14 cd07448 CRD_FZ4 Cysteine-rich 100.0 9.2E-39 2E-43 271.8 7.3 122 36-158 2-124 (126)
15 cd07454 CRD_LIN_17 Cysteine-ri 100.0 1.2E-38 2.6E-43 270.2 6.2 119 35-157 2-121 (124)
16 cd07456 CRD_FZ5_like Cysteine- 100.0 1.6E-38 3.5E-43 268.2 6.3 118 37-155 1-119 (120)
17 cd07888 CRD_corin_2 One of two 100.0 3.9E-38 8.3E-43 266.5 6.3 118 37-155 1-121 (122)
18 cd07445 CRD_corin_1 One of two 100.0 7.9E-38 1.7E-42 265.5 6.6 120 35-155 2-127 (130)
19 cd07446 CRD_SFRP2 Cysteine-ric 100.0 1.8E-37 3.8E-42 264.3 7.1 119 35-157 2-123 (128)
20 cd07450 CRD_FZ6 Cysteine-rich 100.0 2E-37 4.3E-42 263.1 6.2 110 36-145 3-112 (127)
21 cd07444 CRD_SFRP5 Cysteine-ric 100.0 7.1E-37 1.5E-41 259.9 6.5 118 33-156 2-121 (127)
22 cd07447 CRD_Carboxypeptidase_Z 100.0 7.9E-37 1.7E-41 260.1 6.2 116 36-155 2-122 (128)
23 cd07443 CRD_SFRP1 Cysteine-ric 100.0 1.1E-36 2.3E-41 257.8 6.9 117 33-156 2-120 (124)
24 cd07452 CRD_sizzled Cysteine-r 100.0 2.5E-36 5.4E-41 260.3 7.2 121 32-158 3-125 (141)
25 smart00063 FRI Frizzled. Droso 100.0 2.6E-36 5.7E-41 252.6 5.9 113 38-154 1-113 (113)
26 cd07453 CRD_crescent Cysteine- 100.0 4E-36 8.6E-41 257.5 6.2 117 36-158 1-119 (135)
27 cd07451 CRD_SMO Cysteine-rich 100.0 1.5E-34 3.3E-39 246.9 6.2 115 35-156 2-119 (132)
28 cd07455 CRD_Collagen_XVIII Cys 100.0 2.1E-34 4.6E-39 243.2 4.9 113 35-154 2-117 (123)
29 cd07066 CRD_FZ CRD_domain cyst 100.0 3.5E-29 7.5E-34 210.3 6.0 117 37-155 1-118 (119)
30 PF01392 Fz: Fz domain; Inter 99.9 2.4E-26 5.2E-31 190.6 3.4 114 38-152 1-116 (116)
31 PF01534 Frizzled: Frizzled/Sm 99.9 3E-24 6.4E-29 209.7 10.7 96 227-322 1-100 (328)
32 cd07459 CRD_TK_ROR_like Cystei 98.3 3.8E-07 8.2E-12 78.9 2.6 112 36-152 1-130 (135)
33 cd07467 CRD_TK_ROR1 Cysteine-r 97.0 0.00022 4.9E-09 62.0 1.2 116 35-152 2-132 (142)
34 cd07469 CRD_TK_ROR_related Cys 96.9 0.00031 6.7E-09 61.4 1.1 107 35-145 2-132 (147)
35 cd07468 CRD_TK_ROR2 Cysteine-r 96.8 0.00045 9.7E-09 60.0 0.8 115 35-152 2-132 (140)
36 PF05462 Dicty_CAR: Slime mold 96.7 0.0023 4.9E-08 62.6 4.9 102 230-335 2-107 (303)
37 PF12929 Mid1: Stretch-activat 91.9 0.13 2.9E-06 52.6 3.3 92 34-125 229-393 (427)
38 PF00002 7tm_2: 7 transmembran 88.3 0.28 6E-06 45.3 1.9 95 236-334 2-103 (242)
39 PF10856 DUF2678: Protein of u 50.4 6.3 0.00014 33.3 0.5 59 226-289 17-77 (118)
40 KOG4193|consensus 46.3 27 0.00058 37.6 4.5 89 241-334 326-417 (610)
41 PF11694 DUF3290: Protein of u 43.4 88 0.0019 27.5 6.6 54 234-287 12-65 (149)
42 PF10726 DUF2518: Protein of f 39.6 44 0.00096 29.4 4.0 61 230-293 3-66 (145)
43 PF08566 Pam17: Mitochondrial 35.1 1.2E+02 0.0025 27.6 6.1 59 237-295 37-100 (173)
44 PF06024 DUF912: Nucleopolyhed 35.1 25 0.00053 28.8 1.7 36 234-269 59-94 (101)
45 PF03908 Sec20: Sec20; InterP 34.9 34 0.00073 27.2 2.5 26 265-290 64-89 (92)
46 PF03694 Erg28: Erg28 like pro 30.3 1E+02 0.0023 25.8 4.7 54 236-290 3-88 (111)
47 PF14770 TMEM18: Transmembrane 29.7 2.6E+02 0.0057 23.8 7.1 97 238-340 14-117 (123)
48 PF11710 Git3: G protein-coupl 28.6 51 0.0011 30.2 2.8 96 240-336 6-106 (201)
49 COG4836 Predicted membrane pro 25.1 58 0.0013 25.3 2.1 29 316-344 19-51 (77)
50 cd07912 Tweety_N N-terminal do 24.4 3.1E+02 0.0068 28.3 7.9 38 236-273 37-82 (418)
51 PF08997 UCR_6-4kD: Ubiquinol- 20.4 2.4E+02 0.0052 20.9 4.4 35 228-264 5-39 (56)
52 KOG4136|consensus 20.3 1.6E+02 0.0035 26.9 4.2 56 242-298 96-152 (198)
No 1
>KOG3577|consensus
Probab=100.00 E-value=1.6e-54 Score=447.75 Aligned_cols=257 Identities=51% Similarity=0.981 Sum_probs=208.1
Q ss_pred CCCCCCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCc
Q psy9225 31 ILPIHAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPC 109 (350)
Q Consensus 31 ~~~~~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PC 109 (350)
..+...+|+||++++|++++||.|+|||++||++|+||..++++|.||++.+||+++++||||+|+|+|++ .+++++||
T Consensus 36 ~~~~~~~c~pi~i~~C~~i~Yn~T~~PNll~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~PC 115 (556)
T KOG3577|consen 36 QAAGKARCEPITIPMCQGLGYNMTAMPNLVGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPILPC 115 (556)
T ss_pred cccccccccceeccccCCCCCCcccCCccccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccCcc
Confidence 34566799999999999999999999999999999999999999999999999999999999999999986 88999999
Q ss_pred hhhhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy9225 110 RNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEGGKSSTLSPMIESNFGKDLRPGVSYPNLPENA 189 (350)
Q Consensus 110 RslCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~~~~~~~~~~~~s~~~~~~~P~~~~~~~~~~~ 189 (350)
|++||++|++|+++|..||+.||+.|+|++||..++. +++|++++.+........... + . .|....+.. .
T Consensus 116 RslCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~~-~~~C~~~~~~~~~~~~~~~~~-~--~---~~~~g~~~~---~ 185 (556)
T KOG3577|consen 116 RSLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDSA-GELCMGPPSEGFAISAGSAGV-S--V---LPDFGGPGV---V 185 (556)
T ss_pred HHHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCCc-cccccCCccccccCCCCCCCC-C--C---CCCCCCCcc---c
Confidence 9999999999999999999999999999999999853 689999987753211110000 0 0 000000000 0
Q ss_pred CCCCcCCCCCcccCCCCCceeecCccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q psy9225 190 KDYGFVCPLHFKIPPGLDYELKVGDKVEKNCGAPCDGMFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYP 269 (350)
Q Consensus 190 ~~~~~~Cp~pl~~~~~~~Y~~~~~~~~~~~C~~pC~~~~ft~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYP 269 (350)
......|+. ..++. .|.+... ..+++|+++|++++|+++|+++++.|+++||.+|+.+|+||++||++|+.|||||
T Consensus 186 ~~~~~~~~~-~~~~~--~~~~~~~-~~~~~C~~~C~~~~f~~~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~rfryp 261 (556)
T KOG3577|consen 186 LAKPWSDEL-CQNPS--NFVGKES-SEISNCAPPCPNPLFSRDENRFARSWIGIWSALCFLSTLFTVLTFLIDRMRFRYP 261 (556)
T ss_pred cCCCCcccc-ccCcc--ccccccc-cCcccCCCCCCCcccchhhhhhHHHHhhhhhhccchhhHhHHHhhccchhhccCC
Confidence 001112211 11111 1111110 0146899999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhhccC-CeeccCC
Q psy9225 270 ERPIIFLSVCYLMVSITYIIGFMSG-DKISCTK 301 (350)
Q Consensus 270 erpIifls~Cy~~~Slg~ii~~~~g-e~iaC~~ 301 (350)
||||+|+++||++++++|++++..| +.++|++
T Consensus 262 er~i~~l~~c~~~~s~~~~~~~~~g~~~~~c~~ 294 (556)
T KOG3577|consen 262 ERPIFFLSACYLIVSVGYLSSFVLGSDEIACRA 294 (556)
T ss_pred CcchhhHHHhhhhhccceeecccCCCceeccCC
Confidence 9999999999999999999999987 7999996
No 2
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=100.00 E-value=7.4e-40 Score=278.48 Aligned_cols=122 Identities=67% Similarity=1.365 Sum_probs=116.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 114 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe 114 (350)
.++||||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07465 2 HGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSLCE 81 (127)
T ss_pred CCeeeeCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccCCCCcCCccHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred hhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 115 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 115 ~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
+||++|+++|..||+.||+.|+|++||..++ +.+|++++.++
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~C~~~~~~~ 123 (127)
T cd07465 82 RARQGCEALMNKFGFQWPDTLRCEKFPVHGA--GELCVGQNTSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcccCCCCCC
Confidence 9999999999999999999999999999876 68999887554
No 3
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=7e-40 Score=277.94 Aligned_cols=122 Identities=67% Similarity=1.372 Sum_probs=115.5
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 114 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe 114 (350)
.++||||++++|++++||.|+|||++||++|+||..++++|.+|++.+||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~i~PCRslCe 81 (125)
T cd07466 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTVLEQAIPPCRSLCE 81 (125)
T ss_pred CCccccCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCCCCCcCCCcHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876689999999999
Q ss_pred hhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 115 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 115 ~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
+||++|+++|..||+.||+.|+|++||..++ +.+|+.++.++
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~Ci~~~~~~ 123 (125)
T cd07466 82 RARQGCEALMNKFGFQWPERLRCENFPVHGA--GEICVGQNTSD 123 (125)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCcCCCCCC
Confidence 9999999999999999999999999999876 67999876543
No 4
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=100.00 E-value=1.1e-39 Score=277.52 Aligned_cols=123 Identities=43% Similarity=0.989 Sum_probs=116.2
Q ss_pred CCCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhh
Q psy9225 34 IHAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNL 112 (350)
Q Consensus 34 ~~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRsl 112 (350)
++++||||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++
T Consensus 1 ~~~~CepI~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRsl 80 (127)
T cd07463 1 RAAKCQPVVIPMCRGIGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRPM 80 (127)
T ss_pred CCCccccCChhhhCCCCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999987 56889999999
Q ss_pred hhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 113 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 113 Ce~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
||+||++|+++|..||+.||+.|+|++||..++. +.+|++++..
T Consensus 81 Ce~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~~~ 124 (127)
T cd07463 81 CEQARQKCSPIMEQFNFGWPESLDCSRLPTRNDP-NALCMEAPEN 124 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CcccCCCCcc
Confidence 9999999999999999999999999999999874 6899988754
No 5
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=100.00 E-value=1.2e-39 Score=277.15 Aligned_cols=122 Identities=66% Similarity=1.337 Sum_probs=116.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 114 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe 114 (350)
.++||||++++|++++||.|+|||++||++|+||..++++|.+|++.+||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07464 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTVLEQAIPPCRSICE 81 (127)
T ss_pred CCccccCChhhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCCCCCcCCCcHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876689999999999
Q ss_pred hhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 115 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 115 ~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
+||++|+++|..||+.||+.|+|++||+.+. +.+|++++.++
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~C~~~~~~~ 123 (127)
T cd07464 82 RARQGCEALMNKFGFQWPERLRCENFPRHGA--EQICVGQNHSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCCCCCCCC
Confidence 9999999999999999999999999999875 68999887654
No 6
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=100.00 E-value=1.1e-39 Score=276.60 Aligned_cols=120 Identities=41% Similarity=0.929 Sum_probs=113.2
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC--CCcccCCchhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI--LERAIPPCRNL 112 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~--~~~~i~PCRsl 112 (350)
+++||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++
T Consensus 1 ~a~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 80 (126)
T cd07441 1 AASCEPVRIPMCKSMPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSV 80 (126)
T ss_pred CCcccccChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999987 36899999999
Q ss_pred hhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 113 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 113 Ce~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
||+||++|+++|..||+.||+.|+|++||..+ +++|+.+...
T Consensus 81 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~~Ci~p~~~ 122 (126)
T cd07441 81 CERARAGCEPVLIRYRHTWPESLACEELPVYD---RGVCISPEAI 122 (126)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCC---CCcCcChhhh
Confidence 99999999999999999999999999999975 3689987643
No 7
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=100.00 E-value=1.4e-39 Score=276.56 Aligned_cols=123 Identities=46% Similarity=1.110 Sum_probs=116.1
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 113 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslC 113 (350)
+++||||++++|+|++||.|+|||++||.+|+||..++++|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07460 2 ALVCQEITVPMCKGIGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRSVC 81 (127)
T ss_pred CCEecccChhhhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999976 568899999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
|+||++|+++|..||+.||+.|+|++||+.++. +.+|++++.++
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~~~~ 125 (127)
T cd07460 82 ERAKAGCSPLMRQYGFAWPERMNCDRLPVLGDP-ETLCMDYNRTE 125 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCCCCC
Confidence 999999999999999999999999999999875 68999877553
No 8
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=100.00 E-value=1.8e-39 Score=275.93 Aligned_cols=123 Identities=44% Similarity=1.024 Sum_probs=115.7
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 113 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslC 113 (350)
.++|+||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+. ..++++|||++|
T Consensus 2 ~~~C~pI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07462 2 EGRCQPIEIPMCKDIGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRVMC 81 (127)
T ss_pred CCeeeecChhhhCCCCcCceeCCcccCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999986 568899999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
|+||++|+++|+.||+.||+.|+|++||..++. +.+|++++..+
T Consensus 82 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~lc~~~~~~~ 125 (127)
T cd07462 82 EQARLKCSPIMEQFNFKWPDSLDCSKLPNKNDP-NYLCMEAPNNG 125 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CcccCCCCCCC
Confidence 999999999999999999999999999999874 67999887543
No 9
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=1.3e-39 Score=276.47 Aligned_cols=120 Identities=44% Similarity=0.965 Sum_probs=113.3
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC--CCcccCCchhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI--LERAIPPCRNL 112 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~--~~~~i~PCRsl 112 (350)
.++||||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+. .+++++|||++
T Consensus 2 ~a~CepI~i~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 81 (127)
T cd07442 2 GAPCEAVRIPMCRHMPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCRSV 81 (127)
T ss_pred CCcccccChhhhCCCCcCcccCcCccCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999986 46899999999
Q ss_pred hhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 113 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 113 Ce~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
||+||++|+++|..||++||+.|+|++||..+ +++|+.++..
T Consensus 82 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~~Ci~p~~~ 123 (127)
T cd07442 82 CQRARDGCEPIMRRYNHSWPESLACDDLPVYD---RGVCISPEAI 123 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCC---CCcccCHHHh
Confidence 99999999999999999999999999999975 3689987754
No 10
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=3.2e-39 Score=274.03 Aligned_cols=121 Identities=47% Similarity=1.128 Sum_probs=114.9
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 113 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslC 113 (350)
.++|+||++++|+++|||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~C~pI~~~~C~~l~Yn~T~~PN~l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRslC 81 (125)
T cd07461 2 ELQCQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVC 81 (125)
T ss_pred CCcccccCHHHhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999987 568999999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~ 156 (350)
|+||++|+++|..||++||+.|+|++||+.+++ +.+|++++.
T Consensus 82 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~~ 123 (125)
T cd07461 82 ERAKAGCAPLMRQYGFPWPDRMRCDLLPEQGNP-DTLCMDYNR 123 (125)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCCC
Confidence 999999999999999999999999999999875 689998764
No 11
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=3.5e-39 Score=271.75 Aligned_cols=118 Identities=73% Similarity=1.446 Sum_probs=112.7
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhhh
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 115 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe~ 115 (350)
++||||++++|++++||.|+|||++||.+|+||..++++|.+|++.+||+++++||||+|+|+|+..+++++|||++||+
T Consensus 1 ~~C~pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~i~PCRslCe~ 80 (119)
T cd07458 1 GKCEPITIPLCTDIPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTVLERPIPPCRSLCES 80 (119)
T ss_pred CccccCChHHhCCCCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCCCCCcCCccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999998667899999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
||++|+++|+.||++||+.|+|++||+.++ +++|++++
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~--~~~C~~~~ 118 (119)
T cd07458 81 ARQGCEALMNKFGFQWPESLDCEKFPVHGA--GDLCVGEN 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcccCCCCCC--CCcCCCCC
Confidence 999999999999999999999999999875 67999764
No 12
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=4.7e-39 Score=271.83 Aligned_cols=119 Identities=46% Similarity=1.051 Sum_probs=113.2
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhhh
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCL 114 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslCe 114 (350)
++||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++||
T Consensus 1 ~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe 80 (121)
T cd07457 1 GKCERITIPMCQGIGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSMCE 80 (121)
T ss_pred CcCccCChHhhCCCCCCceeCCCcCCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999987 4678999999999
Q ss_pred hhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 115 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 115 ~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
+||++|+++|..||++||+.++|++||+.++. +.+|++++
T Consensus 81 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~c~~~~ 120 (121)
T cd07457 81 QARDKCSPIMEQFSFSWPDSLDCDRLPRKNDP-KDLCMEAP 120 (121)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCCcCCCC
Confidence 99999999999999999999999999999875 67999865
No 13
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=100.00 E-value=8.4e-39 Score=271.34 Aligned_cols=120 Identities=44% Similarity=0.874 Sum_probs=113.1
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhhh
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 115 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe~ 115 (350)
-+||||++++|+|++||.|+|||++||++|+||+.++++|.+|++.+||+++++||||+|+|+|++.+++++|||++||+
T Consensus 3 ~~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~~~~~i~PCRslCe~ 82 (127)
T cd07449 3 FSCEPITLRMCQDLPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVTLPCRRLCQR 82 (127)
T ss_pred ceeeeCChhhhCCCCCCcccCCcccCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCCCCCCCCCCHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999998766789999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~ 156 (350)
||++|+++|+.||++||+.|+|++||+.+++ ..+|+++..
T Consensus 83 vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~~-~~~c~~~~~ 122 (127)
T cd07449 83 AYSECSKLMEMFGVPWPEDMECSRFPDCDEP-YPRLVDLSL 122 (127)
T ss_pred HHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-ccccccccc
Confidence 9999999999999999999999999998875 468988653
No 14
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=100.00 E-value=9.2e-39 Score=271.83 Aligned_cols=122 Identities=43% Similarity=0.988 Sum_probs=115.1
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhhh
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCL 114 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslCe 114 (350)
++||||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++||
T Consensus 2 ~~Cepi~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCRslCe 81 (126)
T cd07448 2 RRCEPIRIEMCQGLGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCL 81 (126)
T ss_pred CeeeeCCHHHhCCCCcccccCCCcCCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 5679999999999
Q ss_pred hhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 115 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 115 ~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
+||++|+++|+.+|++||++|+|++||+.++. +.+|+.++.++
T Consensus 82 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~~~~ 124 (126)
T cd07448 82 SVKKRCLPVLKEFGFPWPEALNCSKFPPQNNH-NHMCMEGPGDE 124 (126)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCccCCCCCcC
Confidence 99999999999999999999999999998864 67999887553
No 15
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=100.00 E-value=1.2e-38 Score=270.15 Aligned_cols=119 Identities=36% Similarity=0.931 Sum_probs=112.4
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 113 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslC 113 (350)
.++|+||++++|+|++||.|+|||++||.+|+||..+++.|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~C~Pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslC 81 (124)
T cd07454 2 KGKCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKSVC 81 (124)
T ss_pred CCccccCChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCChhHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999987 567899999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
|+||++|+++|..||++||+.|+|++||.. +++|+.+..+
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~----~~~C~~p~~~ 121 (124)
T cd07454 82 EQVKADCFSILEEFGIGWPEPLNCAQFPDP----PELCMKPTED 121 (124)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhCCCC----CCCCCCcchh
Confidence 999999999999999999999999999986 3589998654
No 16
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=1.6e-38 Score=268.17 Aligned_cols=118 Identities=53% Similarity=1.194 Sum_probs=112.6
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchhhhhh
Q psy9225 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCLS 115 (350)
Q Consensus 37 ~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslCe~ 115 (350)
+||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++||+
T Consensus 1 ~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~ 80 (120)
T cd07456 1 KCEEITIPMCKGIGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVCER 80 (120)
T ss_pred CccccChhhhCCCCCCcccCCCcCCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999987 56899999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
||++|+++|..||+.||+.++|++||+.++. +.+|++++
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~ 119 (120)
T cd07456 81 ARDGCAPIMRQYGFAWPERMSCDALPEGGDP-DNLCMDRN 119 (120)
T ss_pred HHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCC
Confidence 9999999999999999999999999999874 67899764
No 17
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=100.00 E-value=3.9e-38 Score=266.51 Aligned_cols=118 Identities=37% Similarity=0.866 Sum_probs=110.3
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCCHHHHHH--hhhhhcccccccccccccccccccccccccC-CCcccCCchhhh
Q psy9225 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGF--EVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 113 (350)
Q Consensus 37 ~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~--~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRslC 113 (350)
.||||++++|++++||.|+|||++||++|+||+. ++++|.+|++++||+++++||||+|+|+|+. .+++++|||++|
T Consensus 1 ~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslC 80 (122)
T cd07888 1 QCEPITLELCMNLPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRSLC 80 (122)
T ss_pred CCccCCHhhhCCCCcCcccCCcccCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcHHHH
Confidence 5999999999999999999999999999999976 4669999999999999999999999999986 568999999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
|+||++|+++|..||+.||+.|+|++||+.++. +.+|+.++
T Consensus 81 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~p~ 121 (122)
T cd07888 81 RNSKERCESVLGIVGLQWPEDTDCAQFPEENSD-NQTCLLPD 121 (122)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCccccCCCCCCC-CCcCCCCC
Confidence 999999999999999999999999999998753 67899875
No 18
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=100.00 E-value=7.9e-38 Score=265.53 Aligned_cols=120 Identities=27% Similarity=0.606 Sum_probs=109.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCC---CcccCCchh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL---ERAIPPCRN 111 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~---~~~i~PCRs 111 (350)
+++||||++++|++++||.|.|||++||.+ .||+.++++|.+|++.+||+++++||||+|+|+|++. ..+++|||+
T Consensus 2 ~~~CepI~i~~C~~l~YN~T~~PN~lgh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PCRs 80 (130)
T cd07445 2 TSACMNITHSQCQMLPYHSTLKPSLLSVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPCRS 80 (130)
T ss_pred CCccccCChhhhCCCCCccccCCccccccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCCHH
Confidence 579999999999999999999999999987 5888899999999999999999999999999999873 358999999
Q ss_pred hhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCC---CCCCccCCC
Q psy9225 112 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG---PDSLCVGDN 155 (350)
Q Consensus 112 lCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~---~~~lC~~~~ 155 (350)
+||+||++|+++|..||++||+.|+|++||+.++. ..+.|+.|.
T Consensus 81 lCe~vr~~C~~~m~~fg~~WPe~L~C~~fP~~~~~~~~~~~~c~~~~ 127 (130)
T cd07445 81 FCEAAKEGCEPVLGMVNASWPDFLRCSQFRNNTETAVENRALCFSPQ 127 (130)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCccccCCCCCCcccccccccChh
Confidence 99999999999999999999999999999998762 134666654
No 19
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=100.00 E-value=1.8e-37 Score=264.26 Aligned_cols=119 Identities=39% Similarity=0.986 Sum_probs=112.0
Q ss_pred CCceeeeC--cccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchh
Q psy9225 35 HAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRN 111 (350)
Q Consensus 35 ~~~Cepi~--~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRs 111 (350)
.++|+||+ +++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||+
T Consensus 2 ~s~C~pI~~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PCRs 81 (128)
T cd07446 2 KSNCKPIPANMLLCHGIEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCRS 81 (128)
T ss_pred CCCceECCCCchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCccHH
Confidence 57899998 88999999999999999999999999999999999999999999999999999999986 5789999999
Q ss_pred hhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 112 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 112 lCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
+||+||++|+++|..||+.||+.|+|++||.. +++|+.+.+.
T Consensus 82 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~----~~~Ci~~~~~ 123 (128)
T cd07446 82 LCEAVKDGCAPVMSAFGFPWPDMLDCTRFPLD----NDLCIPPAGS 123 (128)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcccCCCC----CCcccCcccc
Confidence 99999999999999999999999999999996 3589977643
No 20
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=100.00 E-value=2e-37 Score=263.11 Aligned_cols=110 Identities=39% Similarity=0.934 Sum_probs=105.5
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhhh
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 115 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe~ 115 (350)
-+||||++++|+|++||.|+|||++||.+|+||..++++|.+|++.+||+++++||||+|+|+|++...+++|||++||+
T Consensus 3 ~~CepI~~~~C~~l~YN~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~i~PCRslCe~ 82 (127)
T cd07450 3 FTCEPITVPRCLKMPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQIHVVRPCRELCEK 82 (127)
T ss_pred ceeeeCChhhcCCCCCCcccCCcccCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccCCCCcCCCCHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999998755788999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCC
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSS 145 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~ 145 (350)
||++|+++|..||+.||+.|+|++||..++
T Consensus 83 vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~ 112 (127)
T cd07450 83 VYSDCKKLIDTFGISWPEELECDRLQYCDE 112 (127)
T ss_pred HHHHHHHHHHHhCCCCCCcCCcccCCCCCC
Confidence 999999999999999999999999998765
No 21
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=7.1e-37 Score=259.90 Aligned_cols=118 Identities=38% Similarity=0.955 Sum_probs=110.9
Q ss_pred CCCCceeeeC--cccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCch
Q psy9225 33 PIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 110 (350)
Q Consensus 33 ~~~~~Cepi~--~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCR 110 (350)
...++|+||+ +++|++++||.|+|||++||.+|+||..++++|.+|++++||+++++||||+|+|+|. +++++|||
T Consensus 2 ~~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~--~~~i~PCR 79 (127)
T cd07444 2 SKQPQCVDIPADLPLCHNVGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCL--DRPIYPCR 79 (127)
T ss_pred CCCCCceECCCCchhhcCCCCCceeCCcccCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCC--CCCCCCcH
Confidence 3568999998 8999999999999999999999999999999999999999999999999999999997 47899999
Q ss_pred hhhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy9225 111 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156 (350)
Q Consensus 111 slCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~ 156 (350)
++||+||++|+++|+.||+.||+.|+|++||+. +++|+....
T Consensus 80 slCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~----~~~C~~~~~ 121 (127)
T cd07444 80 SLCEAVRDSCAPVMESYGFPWPEMLHCHKFPLD----NDLCIAVQF 121 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCChhhCCCC----CCccccccc
Confidence 999999999999999999999999999999986 358998654
No 22
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=100.00 E-value=7.9e-37 Score=260.12 Aligned_cols=116 Identities=30% Similarity=0.736 Sum_probs=107.2
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCCHHHHHH--h---hhhhcccccccccccccccccccccccccCCCcccCCch
Q psy9225 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGF--E---VHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 110 (350)
Q Consensus 36 ~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~--~---l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCR 110 (350)
++||||++++|++++||.|+|||++||.+|+|+.. + +++|.+|++++||+++++||||+|+|+|+. +++++|||
T Consensus 2 ~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~-~~~i~PCR 80 (128)
T cd07447 2 ATCTDLLLSYCSDVSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCEN-DKVIKPCR 80 (128)
T ss_pred CcccCCChhhcCCCCCCcccCCcccCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCC-CCccCCCH
Confidence 68999999999999999999999999999998653 2 789999999999999999999999999986 68999999
Q ss_pred hhhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 111 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 111 slCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
++||+||++|+++|..||+.||++|+|++||... .+.|+.|.
T Consensus 81 slCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~~c~~~~ 122 (128)
T cd07447 81 STCEALRKRCSHAFDAIQMAWPYFLDCDRFFAGE---QEGCYDPL 122 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCccccCCCcc---CCCccChH
Confidence 9999999999999999999999999999999764 35698865
No 23
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=100.00 E-value=1.1e-36 Score=257.82 Aligned_cols=117 Identities=36% Similarity=0.894 Sum_probs=110.2
Q ss_pred CCCCceeeeC--cccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCch
Q psy9225 33 PIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 110 (350)
Q Consensus 33 ~~~~~Cepi~--~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCR 110 (350)
...++|+||+ +++|+|++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|. +++++|||
T Consensus 2 ~~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~--~~~i~PCR 79 (124)
T cd07443 2 TKPPQCVDIPADLRLCHNVGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCL--DRPVYPCR 79 (124)
T ss_pred CCCCCceECCCchhhhcCCCCCceeCccccCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCC--CCCCCCCH
Confidence 3568999998 8999999999999999999999999999999999999999999999999999999997 47899999
Q ss_pred hhhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy9225 111 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156 (350)
Q Consensus 111 slCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~ 156 (350)
++||+||++|+++|.+||+.||+.|+|++||.. ++|+.+..
T Consensus 80 slCe~vr~~C~~~m~~~g~~WP~~L~C~~fP~~-----~~ci~~~~ 120 (124)
T cd07443 80 WLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEG-----EVCIAMTP 120 (124)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCC-----CCccCCCC
Confidence 999999999999999999999999999999974 46998765
No 24
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=100.00 E-value=2.5e-36 Score=260.28 Aligned_cols=121 Identities=33% Similarity=0.856 Sum_probs=113.2
Q ss_pred CCCCCceeeeC--cccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCc
Q psy9225 32 LPIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPC 109 (350)
Q Consensus 32 ~~~~~~Cepi~--~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PC 109 (350)
+...++|+||+ +++|++++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|.+ ++++||
T Consensus 3 ~~~s~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~~--~~i~PC 80 (141)
T cd07452 3 IGLSTKCVPIPPEMSMCQDVGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCLD--TFIQPC 80 (141)
T ss_pred CCCCCcceeCCCcchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCCC--CCCcCC
Confidence 45678999997 89999999999999999999999999999999999999999999999999999999974 689999
Q ss_pred hhhhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 110 RNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 110 RslCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
|++||+||++|+++|..||+.||+.|+|++||.. +++|+++..+.
T Consensus 81 RslCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~----~~~C~~~~~~~ 125 (141)
T cd07452 81 RSMCVAVRDSCAPVLACHGHSWPESLDCDRFPAG----EDMCLASLSKE 125 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCC----CCccCCCCccc
Confidence 9999999999999999999999999999999996 35899987654
No 25
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=100.00 E-value=2.6e-36 Score=252.61 Aligned_cols=113 Identities=59% Similarity=1.250 Sum_probs=106.9
Q ss_pred eeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhhhhhh
Q psy9225 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLSAR 117 (350)
Q Consensus 38 Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslCe~v~ 117 (350)
|+||++++|+|++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++...+++|||++||+||
T Consensus 1 C~pi~~~~C~~l~Yn~T~~PN~l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~~~~~PCRs~Ce~vr 80 (113)
T smart00063 1 CEPITIPLCKDLGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDLRPILPCRSLCEAAR 80 (113)
T ss_pred CcCCCcHhHCCCCcccccCCCccCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCCCcCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999874447999999999999
Q ss_pred cCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy9225 118 NGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 154 (350)
Q Consensus 118 ~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~ 154 (350)
++|+++|..+|+.||++++|++||..+ ++|+++
T Consensus 81 ~~C~~~~~~~g~~WP~~l~C~~fP~~~----~~C~~~ 113 (113)
T smart00063 81 EGCEPLMEKFGFPWPEFLRCDRFPVQE----ELCMDP 113 (113)
T ss_pred HHHHHHHHHhCCCCCCcCCcccCCCCC----CCCCCc
Confidence 999999999999999999999999874 478863
No 26
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=100.00 E-value=4e-36 Score=257.48 Aligned_cols=117 Identities=38% Similarity=0.922 Sum_probs=109.5
Q ss_pred CceeeeC--cccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCcccCCchhhh
Q psy9225 36 AKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLC 113 (350)
Q Consensus 36 ~~Cepi~--~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRslC 113 (350)
.+|++|+ +++|++++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+ +++++|||++|
T Consensus 1 ~~C~~iP~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~--~~~i~PCRslC 78 (135)
T cd07453 1 SPCMRIPKSMALCYDIGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICW--DRPIYPCRSLC 78 (135)
T ss_pred CCCccCCCcchhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCC--CCCCCccHHHH
Confidence 3799887 7899999999999999999999999999999999999999999999999999999997 68999999999
Q ss_pred hhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 114 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 114 e~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
|+||++|+++|..||+.||+.|+|++||+. +++|+++...+
T Consensus 79 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~----~~~Ci~p~~~~ 119 (135)
T cd07453 79 EAVRSSCAPLMACYGYPWPEILHCDKFPVD----HDLCISPQFID 119 (135)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhCCCC----CCcccCCCCCC
Confidence 999999999999999999999999999985 45899886543
No 27
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=100.00 E-value=1.5e-34 Score=246.86 Aligned_cols=115 Identities=27% Similarity=0.570 Sum_probs=106.9
Q ss_pred CCceeeeCcccccC--CCCCCcccCCCCCCCCHHHHHHhhhhhcccccc-cccccccccccccccccccCCCcccCCchh
Q psy9225 35 HAKCETITIPFCQD--IAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKV-KCSPDLQFFLCSMYAPVCTILERAIPPCRN 111 (350)
Q Consensus 35 ~~~Cepi~~~~C~~--l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~-~Cs~~l~~FLCs~y~P~C~~~~~~i~PCRs 111 (350)
.++||||++++|.| +|||.|+|||++||++|+||+.++++|.+|+++ +||+++++||||+|+|+|++ +++++|||+
T Consensus 2 ~~~Cepi~~~~C~g~~lpYn~T~~PN~~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~-~~~~~PCRs 80 (132)
T cd07451 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCEN-GKVELPSQE 80 (132)
T ss_pred CceeeECCccccCCCCCCccceecCCccCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCC-CCccCCCHH
Confidence 57999999999988 999999999999999999999999999999999 99999999999999999986 689999999
Q ss_pred hhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy9225 112 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156 (350)
Q Consensus 112 lCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~ 156 (350)
+||+||++|+++|..| .||++|+|++||... ..|.++-+
T Consensus 81 lCe~vr~~C~~~m~~~--~WP~~L~C~~~p~~~----~~C~~~~~ 119 (132)
T cd07451 81 MCQATRGPCKIVENER--GWPDFLRCDNDRFPP----RGCKNDVR 119 (132)
T ss_pred HHHHHHHHHHHHHHcC--CCCCcCcCCCCCCcc----ccCCCHHH
Confidence 9999999999999877 699999999999872 46876554
No 28
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=100.00 E-value=2.1e-34 Score=243.17 Aligned_cols=113 Identities=26% Similarity=0.655 Sum_probs=105.0
Q ss_pred CCceeee--CcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchh
Q psy9225 35 HAKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRN 111 (350)
Q Consensus 35 ~~~Cepi--~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRs 111 (350)
..+|+|| .+++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+. ...+++|||+
T Consensus 2 ~~~C~pIp~~l~~C~~l~Yn~t~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PCRs 81 (123)
T cd07455 2 RPRCLPVPSSLPFCSRLGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCRQ 81 (123)
T ss_pred CCCCccCCCccccccCCCcccccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCccHH
Confidence 5789999 699999999999999999999999999999999999999999999999999999999987 4568999999
Q ss_pred hhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy9225 112 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 154 (350)
Q Consensus 112 lCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~ 154 (350)
+||+||++|+++|..|| || ++|++||+.++ ++|+..
T Consensus 82 lCe~vr~~C~~~m~~fg--~p--l~C~~fP~~~~---~~C~~~ 117 (123)
T cd07455 82 FCEVLQDSCWNLLEGGR--LP--VACASLPEQED---GYCVLI 117 (123)
T ss_pred HHHHHHHHHHHHHHccC--CC--ChHHHCCCCCC---cccccC
Confidence 99999999999999887 66 89999999864 688864
No 29
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.95 E-value=3.5e-29 Score=210.27 Aligned_cols=117 Identities=50% Similarity=1.113 Sum_probs=110.0
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCC-CcccCCchhhhhh
Q psy9225 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL-ERAIPPCRNLCLS 115 (350)
Q Consensus 37 ~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~-~~~i~PCRslCe~ 115 (350)
+|+||+.++|++++||.|.+||.+||.+|+||...+..|.+|++.+||+++++|+|++|+|+|... ..+++|||++||+
T Consensus 1 ~C~pi~~~~C~~~~Yn~t~~pn~~~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~Cee 80 (119)
T cd07066 1 KCEPIPLPLCRGLPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEE 80 (119)
T ss_pred CCccCCHHHhCCCCCCceeCCCccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999873 3699999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~ 155 (350)
|++.|...+..+|+.||..++|++||..++ ++.|+.++
T Consensus 81 v~~~C~~~~~~~~~~wp~~~~C~~~p~~~~--~~~C~~p~ 118 (119)
T cd07066 81 VRDSCEPLMLAFGFPWPEPLDCDRFPDSNE--EGLCISPP 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCcCCccccCCCCC--CCcCCCCC
Confidence 999999999999999999999999999875 57898765
No 30
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.92 E-value=2.4e-26 Score=190.60 Aligned_cols=114 Identities=38% Similarity=0.901 Sum_probs=96.8
Q ss_pred eeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCCCc--ccCCchhhhhh
Q psy9225 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILER--AIPPCRNLCLS 115 (350)
Q Consensus 38 Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~~~--~i~PCRslCe~ 115 (350)
|+||+.++|++++||.|.|||.+||.+|+++..++..|..|++.+||++++.|||++|+|+|.+... +++|||++||+
T Consensus 1 C~pi~~~~C~~~~y~~t~~pn~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~C~~ 80 (116)
T PF01392_consen 1 CEPITLSFCRGLPYNQTSFPNSLGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSLCEE 80 (116)
T ss_dssp EEE---GGGTTSS-TEEESSETTTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHHHHH
T ss_pred CccCChHHhcCCCCCceEeecccCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCHHHccc
Confidence 8999999999999999999999999999999999999999999999999999999999999987332 38999999999
Q ss_pred hhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCcc
Q psy9225 116 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152 (350)
Q Consensus 116 v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~ 152 (350)
+++.|.+.+..++..||+.++|++||..++ ++..|+
T Consensus 81 v~~~C~~~~~~~~~~~~~~~~C~~lP~~~~-~~~~C~ 116 (116)
T PF01392_consen 81 VKSSCSPELENLGLGWPSFLDCSNLPESNS-DSESCI 116 (116)
T ss_dssp HHHHHHHHHHHTTTTTSGGG-GGGSS-TTT-STTCCB
T ss_pred cccccHHHHHHhcCCCCCCCCcccCCCCCC-CCCCCC
Confidence 999999999999999999999999999876 256675
No 31
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=99.91 E-value=3e-24 Score=209.68 Aligned_cols=96 Identities=46% Similarity=0.937 Sum_probs=82.8
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHhhhccC-CeeccCC-CCC
Q psy9225 227 MFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSG-DKISCTK-PFS 304 (350)
Q Consensus 227 ~~ft~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ii~~~~g-e~iaC~~-~~~ 304 (350)
|+||++||++++.|+++||++|+++|+||++||+||++|||||||||+|+++||+++|+||++|++.| |+|+|++ +++
T Consensus 1 p~ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~ 80 (328)
T PF01534_consen 1 PFFTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGT 80 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999985 9999998 555
Q ss_pred CCCCCC--CCchhHHHHHHH
Q psy9225 305 PPPEHP--HLAMPRAIAFIH 322 (350)
Q Consensus 305 ~~~~~~--~~~~~~~~~~~~ 322 (350)
.+.... .-+.+|++.|..
T Consensus 81 ~~~~~~~~~~~~~C~~~F~l 100 (328)
T PF01534_consen 81 ERILVQDGLENSSCTVVFLL 100 (328)
T ss_pred ceeEeecCCCCCchhhHHHH
Confidence 443222 234555555444
No 32
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=98.29 E-value=3.8e-07 Score=78.87 Aligned_cols=112 Identities=25% Similarity=0.437 Sum_probs=74.1
Q ss_pred CceeeeCcccccC-CCCCCccc-CCCCCCCCHHHHHHhhh---hhcc---cccccccccccccccccccccccC---CCc
Q psy9225 36 AKCETITIPFCQD-IAYNETIM-PNLLGHSKQEDAGFEVH---QYFP---LVKVKCSPDLQFFLCSMYAPVCTI---LER 104 (350)
Q Consensus 36 ~~Cepi~~~~C~~-l~YN~T~~-PN~~gh~tq~ea~~~l~---~f~~---Lv~~~Cs~~l~~FLCs~y~P~C~~---~~~ 104 (350)
+.|+++.-..|.+ ++ |...| .+ ..+|++.+.++. .+.. -+...|.+++..+||..+||.|.+ .+.
T Consensus 1 G~C~~Y~G~vC~~~L~-~~~Vyv~~---~~~q~~~e~~l~~~~~~i~~~~~ls~~C~~~a~~~lC~~~FP~C~~~~~~~~ 76 (135)
T cd07459 1 GYCQPYRGSVCAKYLG-NKSVYVTS---KQTQEDIEEQLSAAFTVISTSSDVSPKCQQYALPSLCYYAFPLCDEGSSTPK 76 (135)
T ss_pred CcCccccchhhHHhcC-CCeEEEeC---CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhCCCCCCCCCCCC
Confidence 5799999999998 55 55444 33 233333332221 1222 245699999999999999999987 357
Q ss_pred ccCCchhhhhhhhc-Cchhhhh---h---cCCCCCCCcCCCCCCCCCCCCCCCcc
Q psy9225 105 AIPPCRNLCLSARN-GCEKLMN---D---FGFQWPETFECSKFPLPSSGPDSLCV 152 (350)
Q Consensus 105 ~i~PCRslCe~v~~-~C~~~l~---~---~g~~WP~~l~C~~fP~~~~~~~~lC~ 152 (350)
+.+.||+-|+.++. .|..... + .|..+. .-+|+.+|..+..+...|+
T Consensus 77 p~~iCre~C~~l~~~~C~~E~~~~~~~~~~g~~~~-lp~C~~LP~~~~~~~~~C~ 130 (135)
T cd07459 77 PRRICRDECELLENDLCKKEYAIAKRHPLIGHQLL-LPDCSSLPSPGSPESSNCI 130 (135)
T ss_pred CCcccHHHHHHHHHhHhHHHHHHHHhCcccCCccC-CCCccCCCCCCCCCCCCCe
Confidence 88899999999987 9965432 1 232222 3589999987642233454
No 33
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.05 E-value=0.00022 Score=61.97 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=75.7
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhh---hc---ccccccccccccccccccccccccC---CCcc
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQ---YF---PLVKVKCSPDLQFFLCSMYAPVCTI---LERA 105 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~---f~---~Lv~~~Cs~~l~~FLCs~y~P~C~~---~~~~ 105 (350)
.+-|+++.-..|+..-=|.+.|-|. ..+|.+.+.++.. |. .-+...|.+.+..+||..-||.|.. .+.+
T Consensus 2 ~GyC~~YrG~vC~~~L~~~~Vf~~~--~~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~P~p 79 (142)
T cd07467 2 DGFCQPYRGIACARFIGNRTIYMES--LHMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGMPKP 79 (142)
T ss_pred CCccccccchHHHHHhCCCeEEEeC--CCCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCCCCc
Confidence 5779999999999866665554442 2456665555442 22 1234699999999999999999986 4567
Q ss_pred cCCchhhhhhhh-cCchhh---hhhcCC--CCCCCcCCCCCCCCCCCCCCCcc
Q psy9225 106 IPPCRNLCLSAR-NGCEKL---MNDFGF--QWPETFECSKFPLPSSGPDSLCV 152 (350)
Q Consensus 106 i~PCRslCe~v~-~~C~~~---l~~~g~--~WP~~l~C~~fP~~~~~~~~lC~ 152 (350)
.+-||+-|+.++ +-|..- +++.++ .-...=+|+.+|..+......|+
T Consensus 80 r~iCreeC~~le~~~C~~Ey~~a~~~~~i~~~~~LP~C~~LP~~~~~~~~~C~ 132 (142)
T cd07467 80 RDLCRDECEILENVLCQTEYIFARSNPMILMRLKLPNCEDLAQPDSPEAANCI 132 (142)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHhCcccccccCCCChhhcCCCCCCCCCCce
Confidence 788999999994 557532 222211 10112389999987543233444
No 34
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=96.93 E-value=0.00031 Score=61.43 Aligned_cols=107 Identities=24% Similarity=0.470 Sum_probs=71.2
Q ss_pred CCceeeeCcccccC-CCCCCcccCCCCCCCCHHHHHHhhhh--hccc---ccccccccccccccccccccccC---CCcc
Q psy9225 35 HAKCETITIPFCQD-IAYNETIMPNLLGHSKQEDAGFEVHQ--YFPL---VKVKCSPDLQFFLCSMYAPVCTI---LERA 105 (350)
Q Consensus 35 ~~~Cepi~~~~C~~-l~YN~T~~PN~~gh~tq~ea~~~l~~--f~~L---v~~~Cs~~l~~FLCs~y~P~C~~---~~~~ 105 (350)
.+-|+++.=..|+. +.-+...|-|. ...++++++.++.. |..+ +...|.+.....||...||.|.. .+.+
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~-s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~~~p~p 80 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNS-SYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYAFPECHPSGVGPTP 80 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 46799999999998 44444443333 23344444443332 4444 35699999999999999999987 3456
Q ss_pred cCCchhhhhhhhcC-chhh---hhh---cC--------CCCCCCcCCCCCCCCCC
Q psy9225 106 IPPCRNLCLSARNG-CEKL---MND---FG--------FQWPETFECSKFPLPSS 145 (350)
Q Consensus 106 i~PCRslCe~v~~~-C~~~---l~~---~g--------~~WP~~l~C~~fP~~~~ 145 (350)
.+-||+-|+.++.. |... +++ .| +..| +|+++|..+.
T Consensus 81 ~plCredC~a~~~~~C~~Ew~~~e~~~~~g~~~~~~~~~~LP---~C~~LP~~~~ 132 (147)
T cd07469 81 KPLCREDCLAVKELFCYKDWALIEENKQRGIYLKSRGHFTLP---ECESLPSIHA 132 (147)
T ss_pred CchhHHHHHHHHHHHhHHHHHHHHHhhhccccccccccccCC---chhhcCCCCC
Confidence 77899999999765 7432 221 12 1234 8999998754
No 35
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.77 E-value=0.00045 Score=59.98 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=74.7
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhh---hhcc---cccccccccccccccccccccccC---CCcc
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVH---QYFP---LVKVKCSPDLQFFLCSMYAPVCTI---LERA 105 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~---~f~~---Lv~~~Cs~~l~~FLCs~y~P~C~~---~~~~ 105 (350)
.+-|+++.-..|+..--|.+.|-+. ..+|.+++.++. .|.. -+...|.+.+..+||...||.|.. .+.+
T Consensus 2 ~G~C~~Y~G~vC~~yL~~~~V~v~~--~~~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~~p~p 79 (140)
T cd07468 2 DGFCQPYRGIACARFIGNRTIYVDS--LQMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSRTPKP 79 (140)
T ss_pred CCcceeccChHHHHHhCCCeEEEec--CCchHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 5789999999999865555443322 235555555444 2222 234699999999999999999986 4566
Q ss_pred cCCchhhhhhhh-cCchhh---hhhc---CCCCCCCcCCCCCCCCCCCCCCCcc
Q psy9225 106 IPPCRNLCLSAR-NGCEKL---MNDF---GFQWPETFECSKFPLPSSGPDSLCV 152 (350)
Q Consensus 106 i~PCRslCe~v~-~~C~~~---l~~~---g~~WP~~l~C~~fP~~~~~~~~lC~ 152 (350)
.+-||+-|+.++ +-|..- +++. +..+. .-+|+++|..+......|+
T Consensus 80 r~iCreeC~~l~~~~C~~Ey~~a~~~~~i~~~~~-LP~C~~LP~~~~~~~~~C~ 132 (140)
T cd07468 80 RELCRDECEVLENDLCRQEYNIARSNPLILMQLQ-LPKCEELPLPESPEAANCM 132 (140)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHhhccccccccc-CCchhhCCCCCCCCCCCcc
Confidence 778999999994 557532 2221 22232 3489999987653223343
No 36
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=96.66 E-value=0.0023 Score=62.55 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHhhhcc---C-CeeccCCCCCC
Q psy9225 230 SEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMS---G-DKISCTKPFSP 305 (350)
Q Consensus 230 t~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ii~~~~---g-e~iaC~~~~~~ 305 (350)
+++|.+.......+.|++|++.++|.++||+.-++..+++.|-|+|++++=++.+++.++.... + ++..|. .
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~----~ 77 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQ----F 77 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchh----h
Confidence 4678899999999999999999999999999877666778899999999999888876654332 2 455674 4
Q ss_pred CCCCCCCchhHHHHHHHHHHhhhhhHHhhh
Q psy9225 306 PPEHPHLAMPRAIAFIHKKLTELNKNLVQN 335 (350)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (350)
++...|+.++.-+.|...+|+.|=...+.+
T Consensus 78 Qafliq~f~~as~lWt~~iA~nly~~~~~~ 107 (303)
T PF05462_consen 78 QAFLIQFFMLASFLWTLCIAFNLYLTFVKR 107 (303)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHhhheeEEc
Confidence 556668999999999999999996555544
No 37
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=91.94 E-value=0.13 Score=52.55 Aligned_cols=92 Identities=22% Similarity=0.484 Sum_probs=58.5
Q ss_pred CCCceeeeC-cccccCCCCCCcccCCCCCCCCH-H-----HHHHhhh-----------------hhccccc-cccccccc
Q psy9225 34 IHAKCETIT-IPFCQDIAYNETIMPNLLGHSKQ-E-----DAGFEVH-----------------QYFPLVK-VKCSPDLQ 88 (350)
Q Consensus 34 ~~~~Cepi~-~~~C~~l~YN~T~~PN~~gh~tq-~-----ea~~~l~-----------------~f~~Lv~-~~Cs~~l~ 88 (350)
....|+-|. +++|.++.|.-=.-|+..+..+. . -|..... .|+++.. ..|...=+
T Consensus 229 ~~~nC~Lv~dL~FC~~VAYaVP~np~~~~n~t~L~~~YD~~A~~~Y~NFs~sL~qi~C~t~~~~~YSl~r~C~DC~~aYk 308 (427)
T PF12929_consen 229 SDDNCQLVYDLDFCSEVAYAVPSNPSFFYNKTELAKFYDDYAKSLYANFSKSLQQIPCNTDSEARYSLARTCDDCARAYK 308 (427)
T ss_pred CCCCeeeecCCCCCCCcceecccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCchHHHHHHh
Confidence 356799987 89999988865444444211111 1 1111122 2333322 34555567
Q ss_pred ccccccccccccC---C---------------------------------------------CcccCCchhhhhhhhcCc
Q psy9225 89 FFLCSMYAPVCTI---L---------------------------------------------ERAIPPCRNLCLSARNGC 120 (350)
Q Consensus 89 ~FLCs~y~P~C~~---~---------------------------------------------~~~i~PCRslCe~v~~~C 120 (350)
.-||++-.|+|++ . -+-++||.++|.++.++|
T Consensus 309 ~WLCaVtIPRC~d~~~~~~~~~~r~~~~~~~ng~~~~~~~~~~~~~~~sRN~~Id~~i~PgpY~EiLPC~dlCy~vVrsC 388 (427)
T PF12929_consen 309 NWLCAVTIPRCTDFSSTSPYLQPRNAGQPFPNGTSLPATLRNSRASNSSRNPFIDEVIKPGPYKEILPCIDLCYAVVRSC 388 (427)
T ss_pred hcccEeecccccCCCCCCcccccccccCCCcCCcccccccccccccCCCCCcccccccCCCCcceeccHHHHHHHHHhcC
Confidence 8899999999975 1 023569999999999999
Q ss_pred hhhhh
Q psy9225 121 EKLMN 125 (350)
Q Consensus 121 ~~~l~ 125 (350)
.+.++
T Consensus 389 P~~lG 393 (427)
T PF12929_consen 389 PADLG 393 (427)
T ss_pred chhhC
Confidence 88764
No 38
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=88.26 E-value=0.28 Score=45.26 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHhhhcc-CCeec------cCCCCCCCCC
Q psy9225 236 MSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMS-GDKIS------CTKPFSPPPE 308 (350)
Q Consensus 236 ~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ii~~~~-ge~ia------C~~~~~~~~~ 308 (350)
.++....+-+++|+++.+++++||..-++-.+.+.+....++++.++.++.++++... .+... |. ..+.
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~----~~a~ 77 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCR----AIAI 77 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccch----hhhh
Confidence 3556667778888888888888888665433334566788999999999999988543 23333 85 3455
Q ss_pred CCCCchhHHHHHHHHHHhhhhhHHhh
Q psy9225 309 HPHLAMPRAIAFIHKKLTELNKNLVQ 334 (350)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (350)
..|+..+++.+|..-.+++|-+.++.
T Consensus 78 ~~hy~~la~f~Wm~~~~~~l~~~~~~ 103 (242)
T PF00002_consen 78 LLHYFFLASFFWMLVEAFYLYRLLVK 103 (242)
T ss_dssp --------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhheeEEE
Confidence 66888899999999999999887754
No 39
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=50.42 E-value=6.3 Score=33.32 Aligned_cols=59 Identities=25% Similarity=0.519 Sum_probs=34.6
Q ss_pred CCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHh
Q psy9225 226 GMFFSEKEKK--MSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYII 289 (350)
Q Consensus 226 ~~~ft~~ek~--~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ii 289 (350)
.|+|.|+.++ .+...+++..++..+.|+...+-|..++ |+---+|+++|..++++.-++
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afvf~~~~-----p~p~~iffavcI~l~~~s~~l 77 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFVFPQDP-----PKPLHIFFAVCILLICISAIL 77 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEEecCCC-----CCceEEehHHHHHHHHHHHHh
Confidence 3788666433 3555556655555555554444444443 322238999999999986544
No 40
>KOG4193|consensus
Probab=46.31 E-value=27 Score=37.65 Aligned_cols=89 Identities=15% Similarity=0.248 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CCCCCCchHHHHHHHHHHHHHHHHhhhcc-CCee-ccCCCCCCCCCCCCCchhHH
Q psy9225 241 VGIWSALCATSCLFTVLTFMIDSD-RFRYPERPIIFLSVCYLMVSITYIIGFMS-GDKI-SCTKPFSPPPEHPHLAMPRA 317 (350)
Q Consensus 241 i~v~S~lc~i~TlftvlTF~Id~~-rfrYPerpIifls~Cy~~~Slg~ii~~~~-ge~i-aC~~~~~~~~~~~~~~~~~~ 317 (350)
..|--+++.++-+.|++||++-++ +..+ .+..+=+++|-++.-+-++++..- ..++ .|. ..+...|+..+-|
T Consensus 326 ~~VG~~iSlvcL~lti~ty~~~~~l~~~~-~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~----~~a~llhff~Laa 400 (610)
T KOG4193|consen 326 STVGCIISLVCLLLTIATYLLFRKLQNDR-TKIHINLCLCLFLAELLFLLGIDRTSTSVVLCI----AAAILLHFFFLAA 400 (610)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcccccccCcccccH----HHHHHHHHHHHHH
Confidence 345556666666777888886654 2233 677788888877777787776543 3455 674 2344558888999
Q ss_pred HHHHHHHHhhhhhHHhh
Q psy9225 318 IAFIHKKLTELNKNLVQ 334 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ 334 (350)
.+|+...++-|.++++.
T Consensus 401 F~Wm~leg~hl~~~~v~ 417 (610)
T KOG4193|consen 401 FFWMLLEGFHLYLLLVE 417 (610)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986654
No 41
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.38 E-value=88 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy9225 234 KKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITY 287 (350)
Q Consensus 234 k~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ 287 (350)
..+-..|..++.++-++..+|..+=|+=++...||=|-.||++-+..+++.+-|
T Consensus 12 ~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~ 65 (149)
T PF11694_consen 12 QSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQY 65 (149)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 344555566666677777777777788888888999999998888777776654
No 42
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=39.57 E-value=44 Score=29.36 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCch--HHHHHHHHHHHHHHHHhhhcc
Q psy9225 230 SEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSD-RFRYPERP--IIFLSVCYLMVSITYIIGFMS 293 (350)
Q Consensus 230 t~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~-rfrYPerp--Iifls~Cy~~~Slg~ii~~~~ 293 (350)
+.++-..+..|.++..+..+ ++|++.|+..|. |||.=-.- .+-|++..+..+++|+-|...
T Consensus 3 ~~~~~~~~~~W~~~~ti~~~---~lTilaFi~~WG~RFRLVGvT~F~~vLt~g~fal~~~~~~r~~I 66 (145)
T PF10726_consen 3 TPELFLTYTQWLGIATIALA---VLTILAFIFKWGIRFRLVGVTSFMLVLTVGCFALSLSYFPRVVI 66 (145)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCceEEEecHHHHHHHHHHHHHHheeccCCCccc
Confidence 34555667778777766665 566777999986 88764222 245677777778888777544
No 43
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=35.11 E-value=1.2e+02 Score=27.56 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCCCCCchHHHHHHHHHHHH-HHHHhhhccCC
Q psy9225 237 SRLWVGIWSALCATSCLFTVLTFM----IDSDRFRYPERPIIFLSVCYLMVS-ITYIIGFMSGD 295 (350)
Q Consensus 237 ~~~wi~v~S~lc~i~TlftvlTF~----Id~~rfrYPerpIifls~Cy~~~S-lg~ii~~~~ge 295 (350)
-+.|-.+-|+++.+..+..-..|+ +|+..--.+--|++++.++-+..+ +||+++-+.|.
T Consensus 37 rrr~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~ 100 (173)
T PF08566_consen 37 RRRINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYGLATLACGALGWLVGPSLGN 100 (173)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344445555555444444433333 664433344467788888877666 79999865553
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=35.07 E-value=25 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q psy9225 234 KKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYP 269 (350)
Q Consensus 234 k~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYP 269 (350)
....-.|++++|++|.+.-++.|.=|.|.+.|-++-
T Consensus 59 ~~~~iili~lls~v~IlVily~IyYFVILRer~~~~ 94 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIYYFVILRERQKSI 94 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhheEEEEEecccccc
Confidence 345678999999999999999999999998876554
No 45
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=34.90 E-value=34 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhh
Q psy9225 265 RFRYPERPIIFLSVCYLMVSITYIIG 290 (350)
Q Consensus 265 rfrYPerpIifls~Cy~~~Slg~ii~ 290 (350)
|-..-+|.|+|+++-+|+..++||+.
T Consensus 64 r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 64 RRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 44455899999999999999999873
No 46
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=30.26 E-value=1e+02 Score=25.77 Aligned_cols=54 Identities=9% Similarity=0.224 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC--------------------------------CCCCCCchHHHHHHHHHHH
Q psy9225 236 MSRLWVGIWSALCATSCLFTVLTFMIDSD--------------------------------RFRYPERPIIFLSVCYLMV 283 (350)
Q Consensus 236 ~~~~wi~v~S~lc~i~TlftvlTF~Id~~--------------------------------rfrYPerpIifls~Cy~~~ 283 (350)
.+..|+...|++....++.+.++ ..-.+ -+.-.++++..+++.-+++
T Consensus 3 ~Lp~WLlfVs~~~~~ns~q~y~~-~~~~~~vY~~~~~~vt~L~aRtFG~WTl~s~~ir~~~Ay~i~n~~lY~lt~~Sfvi 81 (111)
T PF03694_consen 3 YLPYWLLFVSVVSLFNSLQCYFS-LSLTRRVYSGKPKQVTPLSARTFGTWTLLSAIIRLYCAYNIHNKPLYDLTFWSFVI 81 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC-hHHHhhccCCCCCCCCchhhhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45677777777777777666665 21111 1112258889999999999
Q ss_pred HHHHHhh
Q psy9225 284 SITYIIG 290 (350)
Q Consensus 284 Slg~ii~ 290 (350)
++++++.
T Consensus 82 Al~HF~s 88 (111)
T PF03694_consen 82 ALGHFLS 88 (111)
T ss_pred HHHHHHH
Confidence 9998775
No 47
>PF14770 TMEM18: Transmembrane protein 18
Probab=29.65 E-value=2.6e+02 Score=23.80 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHHHHhhhccC--CeeccCCCCCCCCCCC--CCc
Q psy9225 238 RLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSG--DKISCTKPFSPPPEHP--HLA 313 (350)
Q Consensus 238 ~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg~ii~~~~g--e~iaC~~~~~~~~~~~--~~~ 313 (350)
+-|+..+.+.-.+..+++++| |.++....++|+.+.-+.++.-++=.+.+. +..+=....+.+|.=- =++
T Consensus 14 EPwl~~L~~fH~~~~~~~~~t------r~~~~~q~~lf~~ll~~v~~aE~iN~~~a~nW~~Fs~qnYFDs~G~Fisvv~s 87 (123)
T PF14770_consen 14 EPWLIGLIAFHVLLLLLAILT------RRRYNFQMILFLILLLLVYCAEYINEYAARNWRSFSKQNYFDSSGVFISVVFS 87 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCeeehHHHH
Confidence 567777766666666666666 667766888888888888887777766653 4555446666665411 244
Q ss_pred hhHHH---HHHHHHHhhhhhHHhhhcceee
Q psy9225 314 MPRAI---AFIHKKLTELNKNLVQNKRAVM 340 (350)
Q Consensus 314 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 340 (350)
+|-.+ .....+...+-+.+++-||+=+
T Consensus 88 ~PlLl~~~ii~~~~l~~~~~lmv~~Kr~ql 117 (123)
T PF14770_consen 88 APLLLNCLIILVNWLYQLCSLMVQVKRAQL 117 (123)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 2223555666677888777643
No 48
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=28.60 E-value=51 Score=30.18 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCchHHHHHHHHHHHHHHHHh-h--hccCCee-ccCCCCCCCCCCCCCch
Q psy9225 240 WVGIWSALCATSCLFTVLTFMI-DSDRFRYPERPIIFLSVCYLMVSITYII-G--FMSGDKI-SCTKPFSPPPEHPHLAM 314 (350)
Q Consensus 240 wi~v~S~lc~i~TlftvlTF~I-d~~rfrYPerpIifls~Cy~~~Slg~ii-~--~~~ge~i-aC~~~~~~~~~~~~~~~ 314 (350)
-..+.|.+++++++.++..|.. +.+|..+=.+=|+.|.++=++.|+++++ . .+.++.+ +...-=..+|...|.+.
T Consensus 6 ~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~ 85 (201)
T PF11710_consen 6 GSIVISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGD 85 (201)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHH
Confidence 3456677777777666666663 2332222235788899999999999988 2 2333222 11111123455557777
Q ss_pred hHHHHHHHHHHhhhhhHHhhhc
Q psy9225 315 PRAIAFIHKKLTELNKNLVQNK 336 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (350)
..+-.|....+... +.++-++
T Consensus 86 ~~sd~~ilaIAihT-~l~v~~~ 106 (201)
T PF11710_consen 86 EASDLWILAIAIHT-FLIVFRP 106 (201)
T ss_pred HHHHHHHHHHHHHH-HHHHhcC
Confidence 77788887777764 4555444
No 49
>COG4836 Predicted membrane protein [Function unknown]
Probab=25.09 E-value=58 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhhHHhhhc----ceeeeeec
Q psy9225 316 RAIAFIHKKLTELNKNLVQNK----RAVMILGT 344 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 344 (350)
-+|+||.-||+.+|+..-.+| |-.||++|
T Consensus 19 i~it~WaLQsi~~d~fiKk~~~tQa~llmI~vt 51 (77)
T COG4836 19 IAITWWALQSINYDKFIKKGKVTQARLLMIFVT 51 (77)
T ss_pred HHHHHHHHHHhhHHHHhhcCchhHHHHHHHHHH
Confidence 478999999999998765554 44555554
No 50
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=24.38 E-value=3.1e+02 Score=28.25 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhccCC----CCCCCCchH
Q psy9225 236 MSRLWVGIWSALCATSCLFTVL----TFMIDSD----RFRYPERPI 273 (350)
Q Consensus 236 ~~~~wi~v~S~lc~i~Tlftvl----TF~Id~~----rfrYPerpI 273 (350)
..-.+.+..++++++.+++.++ ++..+++ |.+|.-+..
T Consensus 37 ~Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~ 82 (418)
T cd07912 37 QSLLILASIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCL 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHH
Confidence 3445556677777777776666 4445654 455554433
No 51
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=20.43 E-value=2.4e+02 Score=20.88 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=26.4
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy9225 228 FFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSD 264 (350)
Q Consensus 228 ~ft~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~ 264 (350)
+..++..++++.|+-..+.-.....+ .+.++.||+
T Consensus 5 ~~G~k~~~lak~w~ps~~~~G~~~~l--~lvy~TDWk 39 (56)
T PF08997_consen 5 LIGPKYIELAKNWIPSAAAWGAAGGL--ALVYFTDWK 39 (56)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTH
T ss_pred hhcHHHHHHHHHhchhHHHHhhhhhh--heeeecchH
Confidence 45788899999999877766665555 566888987
No 52
>KOG4136|consensus
Probab=20.26 E-value=1.6e+02 Score=26.92 Aligned_cols=56 Identities=14% Similarity=0.403 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC-CchHHHHHHHHHHHHHHHHhhhccCCeec
Q psy9225 242 GIWSALCATSCLFTVLTFMIDSDRFRYP-ERPIIFLSVCYLMVSITYIIGFMSGDKIS 298 (350)
Q Consensus 242 ~v~S~lc~i~TlftvlTF~Id~~rfrYP-erpIifls~Cy~~~Slg~ii~~~~ge~ia 298 (350)
.+.|.++.+.+=|..+-|+.+ +---|| ..-..|+.+|-+++-+++++.+.++|++.
T Consensus 96 Fllsc~~vV~NH~L~fr~f~~-e~~y~pFaeV~syf~icvW~vPfa~FVSlSA~D~vL 152 (198)
T KOG4136|consen 96 FLLSCILVVVNHFLWFRFFFS-ESAYYPFAEVASYFGICVWIVPFAFFVSLSANDNVL 152 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHHHHhhHHheeEeccCCccc
Confidence 456777788887778878777 445567 67789999999999999999998887764
Done!