Query psy9225
Match_columns 350
No_of_seqs 169 out of 567
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:06:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ijy_A Frizzled homolog 8; WNT 100.0 4.8E-38 1.6E-42 268.0 6.4 124 33-157 5-129 (130)
2 1ijx_A Secreted frizzled-relat 100.0 1.7E-37 5.8E-42 263.6 4.3 120 35-157 2-123 (127)
3 3hkl_A Muscle, skeletal recept 96.9 0.00044 1.5E-08 61.7 3.3 123 31-158 13-157 (197)
4 3odn_A Dally-like protein; alp 23.9 5.6 0.00019 40.3 -3.4 49 81-135 221-270 (506)
5 3u85_B Histone-lysine N-methyl 22.6 25 0.00086 19.7 0.6 9 264-272 1-9 (21)
6 2z73_A Rhodopsin; visual pigme 20.9 2.3E+02 0.0077 26.4 7.4 57 230-286 30-86 (448)
7 1q90_R Cytochrome B6-F complex 19.0 2.3E+02 0.0078 19.3 5.1 34 232-265 10-43 (49)
8 3ug9_A Archaeal-type opsin 1, 16.7 2.1E+02 0.0072 27.2 6.0 44 230-278 61-104 (333)
9 4acr_A Glypican-1; proteoglyca 16.7 7.2 0.00025 39.2 -4.4 50 81-135 243-293 (478)
10 1vry_A Glycine receptor alpha- 12.4 84 0.0029 23.5 1.5 38 251-288 10-51 (76)
No 1
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1
Probab=100.00 E-value=4.8e-38 Score=268.03 Aligned_cols=124 Identities=44% Similarity=1.088 Sum_probs=114.7
Q ss_pred CCCCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccC-CCcccCCchh
Q psy9225 33 PIHAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRN 111 (350)
Q Consensus 33 ~~~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~-~~~~i~PCRs 111 (350)
+..++|+||++++|++++||.|+|||++||++|+||..+++.|.+|++.+||+++++||||+|+|+|.+ .+++++|||+
T Consensus 5 ~~~~~C~pI~~~~C~~l~Yn~T~~PN~l~h~~q~ea~~~l~~f~~L~~~~C~~~l~~FlCs~~~P~C~~~~~~~~~PCRs 84 (130)
T 1ijy_A 5 AKELACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRS 84 (130)
T ss_dssp --CCCCEECCCGGGTTSSCCEECSSCTTCCCSHHHHHHHHGGGHHHHHHTSCTTHHHHHHHHHSCBCCSSCCSCCCBCHH
T ss_pred CCCCeeeeCChhHhCCCCCCeeECCCcCCCcCHHHHHHHHHHHHHHhccCcCHHHHHHHHHhhCCcccCCCCcccCccHH
Confidence 466899999999999999999999999999999999999999999999999999999999999999987 5789999999
Q ss_pred hhhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 112 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 112 lCe~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
+||+||++|+++|..+|+.||++|+|++||..++. +.+|++++.+
T Consensus 85 lCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~~~ 129 (130)
T 1ijy_A 85 VCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNP-DTLCMDYERT 129 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCGGGSCCSSCT-TSCCBCCCC-
T ss_pred HHHHHhcchHHHHHhcCCCCCCcCCcccCCCCCCC-CCcCCCCCCC
Confidence 99999999999999999999999999999998762 3499988653
No 2
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1
Probab=100.00 E-value=1.7e-37 Score=263.65 Aligned_cols=120 Identities=40% Similarity=0.916 Sum_probs=112.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCCHHHHHHhhhhhcccccccccccccccccccccccccCC--CcccCCchhh
Q psy9225 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL--ERAIPPCRNL 112 (350)
Q Consensus 35 ~~~Cepi~~~~C~~l~YN~T~~PN~~gh~tq~ea~~~l~~f~~Lv~~~Cs~~l~~FLCs~y~P~C~~~--~~~i~PCRsl 112 (350)
+++|+||++++|++++||.|+|||++||.+|+||..++++|.+|++.+||+++++||||+|+|+|.+. .++++|||++
T Consensus 2 ~~~C~pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~~~i~PCRsl 81 (127)
T 1ijx_A 2 SAACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSV 81 (127)
T ss_dssp -CCCEECCCGGGGGSSCCEECSSCTTCCSSHHHHHHHHHTTHHHHTTTCCTTHHHHHHHHHSCBCBSSCSSSCCCBCHHH
T ss_pred CCccccCChhHhCCCCCCeeECCCcCCCcCHHHHHHHHHHHHHHHccCcCHHHHhhhhhccCCcccCCCCCcccCccHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999873 3889999999
Q ss_pred hhhhhcCchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy9225 113 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 157 (350)
Q Consensus 113 Ce~v~~~C~~~l~~~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~ 157 (350)
||+||++|+++|..+|+.||++|+|++||..+ +++|++++..
T Consensus 82 Ce~vr~~C~~~~~~~g~~WP~~l~C~~fP~~~---~~~C~~p~~~ 123 (127)
T 1ijx_A 82 CERARQGCEPILIKYRHSWPESLACDELPVYD---RGVCISPEAI 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCGGGCCCTT---TCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCccccCCCCC---CCcccCcccc
Confidence 99999999999999999999999999999874 4689987643
No 3
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Probab=96.93 E-value=0.00044 Score=61.72 Aligned_cols=123 Identities=22% Similarity=0.384 Sum_probs=80.9
Q ss_pred CCCCCCceeeeCcccccC-CCCCCcccCCCCCCCCHHHHHHhh--hhhccc--ccccccccccccccccccccccC--CC
Q psy9225 31 ILPIHAKCETITIPFCQD-IAYNETIMPNLLGHSKQEDAGFEV--HQYFPL--VKVKCSPDLQFFLCSMYAPVCTI--LE 103 (350)
Q Consensus 31 ~~~~~~~Cepi~~~~C~~-l~YN~T~~PN~~gh~tq~ea~~~l--~~f~~L--v~~~Cs~~l~~FLCs~y~P~C~~--~~ 103 (350)
.....+.|+++.=..|+. |.-|...|-|- .-.+|+++..++ ..|..| +...|.+.+..+||...||.|.+ .+
T Consensus 13 ~~~~~GyC~~YrG~vC~~yL~g~~~Vf~ns-S~~dp~~~~E~l~~aaw~el~~lS~~Cr~aAe~lLC~yaFP~Cd~~~gP 91 (197)
T 3hkl_A 13 PRGSKGYCAQYRGEVCDAVLVKDSLVFFNT-SYPDPEEAQELLIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVLP 91 (197)
T ss_dssp ----CEEEECCCCSSSTTTSCTTCCEEEET-TSSSHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHTCBBCSSSSC
T ss_pred CCCCCcccccccchHHHHHhCCCceEEEec-CcCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 345568899999999998 54555555442 124455555443 235444 34699999999999999999975 34
Q ss_pred cccCCchhhhhhhhcC-chhhh---h----------h-cCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy9225 104 RAIPPCRNLCLSARNG-CEKLM---N----------D-FGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 158 (350)
Q Consensus 104 ~~i~PCRslCe~v~~~-C~~~l---~----------~-~g~~WP~~l~C~~fP~~~~~~~~lC~~~~~~~ 158 (350)
.|.+-||+-|++++.. |.... + . ..+..| +|+.+|..+. +...|..-.-.+
T Consensus 92 ~P~pLCREdC~alk~~~C~~Ew~~~e~~~~~G~~~~~~~~l~LP---~Ce~LP~~~~-~~~~Ct~ig~~d 157 (197)
T 3hkl_A 92 TPMPICREYCLAVKELFCAKEWLAMEGKTHRGLYRSGMHFLPVP---ECSKLPSMHQ-DPTACTRLPYLD 157 (197)
T ss_dssp CBCCBCHHHHHHHHHTTTTTTHHHHHHHHHHHHHHHTCCCCCCC---CGGGSCCTTT-CTTSSBCCTTTC
T ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHhccccccccccccceeCC---chhhCCCCCC-CCCcceeccccc
Confidence 5688999999999654 53221 1 0 124455 8999998865 356788655443
No 4
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=23.86 E-value=5.6 Score=40.26 Aligned_cols=49 Identities=20% Similarity=0.561 Sum_probs=35.6
Q ss_pred cccccc-ccccccccccccccCCCcccCCchhhhhhhhcCchhhhhhcCCCCCCCc
Q psy9225 81 VKCSPD-LQFFLCSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETF 135 (350)
Q Consensus 81 ~~Cs~~-l~~FLCs~y~P~C~~~~~~i~PCRslCe~v~~~C~~~l~~~g~~WP~~l 135 (350)
..|... ++.- |=|-|... .+.||+.+|..|.++|-.-...++..|..++
T Consensus 221 ~eC~rALmkM~----YCp~C~Gl--~~kPC~gyClNVMrGCLa~~adLd~~W~~~I 270 (506)
T 3odn_A 221 ADCTGALTKMQ----HCGACKGY--TEKPCTNYCVNVIKGCLHYQHEFDSEWENFA 270 (506)
T ss_dssp THHHHHHHHHH----TSSGGGTC--CCCBBHHHHHHHHHHHTGGGHHHHHHHHHHH
T ss_pred cHHHHHHHhcC----CCccccCC--CCCCchHHHHHHHHHhccchhhhhhHHHHHH
Confidence 478854 4544 44789753 4789999999999999766555666787654
No 5
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=22.63 E-value=25 Score=19.73 Aligned_cols=9 Identities=56% Similarity=1.424 Sum_probs=6.6
Q ss_pred CCCCCCCch
Q psy9225 264 DRFRYPERP 272 (350)
Q Consensus 264 ~rfrYPerp 272 (350)
+|.|||.||
T Consensus 1 srwrfparp 9 (21)
T 3u85_B 1 SRWRFPARP 9 (26)
T ss_pred CccccccCC
Confidence 367888877
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=20.90 E-value=2.3e+02 Score=26.39 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHH
Q psy9225 230 SEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSIT 286 (350)
Q Consensus 230 t~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~Cy~~~Slg 286 (350)
.......+.....+.+++.++.+++.++.+.-.+++.+-...-|+-||++=+++++.
T Consensus 30 ~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~ 86 (448)
T 2z73_A 30 PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLV 86 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHH
Confidence 445566677777888888888888888877766543333356667777777777664
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=19.03 E-value=2.3e+02 Score=19.30 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy9225 232 KEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDR 265 (350)
Q Consensus 232 ~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~r 265 (350)
+-|+|+...+.....+-.+..++-++.|++++..
T Consensus 10 ~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~ 43 (49)
T 1q90_R 10 NKRNIMNLILAGGAGLPITTLALGYGAFFVPPSS 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeecCCcc
Confidence 4455566665555566666778899999999753
No 8
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=16.74 E-value=2.1e+02 Score=27.18 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHHHHHH
Q psy9225 230 SEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSV 278 (350)
Q Consensus 230 t~~ek~~~~~wi~v~S~lc~i~TlftvlTF~Id~~rfrYPerpIifls~ 278 (350)
|..||..++.|.-+...+..++|+| |++.+.|..--+| .++.+.
T Consensus 61 ~~~~~~~~~~~lWvvfa~M~aatlf----F~~~~~rv~~~wR-~~~v~~ 104 (333)
T 3ug9_A 61 TNAEKLAANILQWITFALSALCLMF----YGYQTWKSTCGWE-EIYVAT 104 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----C--------CCHH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCeE-EEeHHH
Confidence 7789999999988777777776654 5556666655568 555555
No 9
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=16.71 E-value=7.2 Score=39.24 Aligned_cols=50 Identities=22% Similarity=0.609 Sum_probs=35.6
Q ss_pred cccccc-ccccccccccccccCCCcccCCchhhhhhhhcCchhhhhhcCCCCCCCc
Q psy9225 81 VKCSPD-LQFFLCSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETF 135 (350)
Q Consensus 81 ~~Cs~~-l~~FLCs~y~P~C~~~~~~i~PCRslCe~v~~~C~~~l~~~g~~WP~~l 135 (350)
.+|... ++.- |=|-|... ..+.||+.+|..|.++|-.-...++..|..++
T Consensus 243 ~eC~raL~kM~----YCp~C~Gl-~~~kPC~~yC~NVmrGCLa~~adLd~~W~~~I 293 (478)
T 4acr_A 243 PECSRAVMKLV----YCAHCLGV-PGARPCPDYCRNVLKGCLANQADLDAEWRNLL 293 (478)
T ss_dssp HHHHHHHHHHT----THHHHTTC-TTCCBCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHHHHhcC----CCccccCC-CCCCCchhHHHHHHHHhccChhhhhhhHHHHH
Confidence 378854 4544 44778642 24789999999999999766556666787654
No 10
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=12.45 E-value=84 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcc----CCCCCCCCchHHHHHHHHHHHHHHHH
Q psy9225 251 SCLFTVLTFMID----SDRFRYPERPIIFLSVCYLMVSITYI 288 (350)
Q Consensus 251 ~TlftvlTF~Id----~~rfrYPerpIifls~Cy~~~Slg~i 288 (350)
.|+.|+.|.... ..|..|.--.=+|+.+|+.++=++.+
T Consensus 10 ttvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLl 51 (76)
T 1vry_A 10 TTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51 (76)
T ss_dssp HHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 445555555433 23455653344899999988876644
Done!