RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9225
(350 letters)
>gnl|CDD|143567 cd07458, CRD_FZ1_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 1. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7
(Fz7) receptors, and similar proteins. This domain is
required for binding Wnt proteins, which play
fundamental roles in many aspects of early development,
such as cell and tissue polarity, neural synapse
formation, and the regulation of proliferation. Fz
proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and Ca(2+)
modulating signaling pathway. The CRD domain is well
conserved in metazoans - 10 frizzled proteins have been
identified in mammals, 4 in Drosophila and 3 in
Caenorhabditis elegans. Very little is known about the
mechanism by which CRD domains interact with their
ligands. The domain contains 10 conserved cysteines.
Length = 119
Score = 225 bits (576), Expect = 1e-74
Identities = 87/120 (72%), Positives = 99/120 (82%), Gaps = 2/120 (1%)
Query: 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYA 96
KCE ITIP C DI YN TI PNLLGH+KQEDAG EVHQ++PLVKV+CSPDL+FFLCS+YA
Sbjct: 2 KCEPITIPLCTDIPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYA 61
Query: 97 PVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 156
PVCT+LER IPPCR+LC SAR GCE LMN FGFQWPE+ +C KFP+ G LCVG+N
Sbjct: 62 PVCTVLERPIPPCRSLCESARQGCEALMNKFGFQWPESLDCEKFPV--HGAGDLCVGENT 119
>gnl|CDD|143574 cd07465, CRD_FZ1, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 1 (Fz1) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 1 (Fz1) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata.
Length = 127
Score = 191 bits (486), Expect = 5e-61
Identities = 83/121 (68%), Positives = 99/121 (81%), Gaps = 2/121 (1%)
Query: 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 94
H C+ I+IP C DIAYN+TIMPNLLGH+ QEDAG EVHQ++PLVKV+CS +L+FFLCSM
Sbjct: 2 HGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSM 61
Query: 95 YAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 154
YAPVCT+LE+A+PPCR+LC AR GCE LMN FGFQWP+T C KFP+ +G LCVG
Sbjct: 62 YAPVCTVLEQALPPCRSLCERARQGCEALMNKFGFQWPDTLRCEKFPVHGAG--ELCVGQ 119
Query: 155 N 155
N
Sbjct: 120 N 120
>gnl|CDD|143575 cd07466, CRD_FZ7, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 7 (Fz7) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 7 (Fz7) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin
signaling pathways controlling the transcriptional
activation of target genes Siamois and Xnr3 in the
animal caps of late blastula.
Length = 125
Score = 186 bits (473), Expect = 4e-59
Identities = 83/121 (68%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Query: 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 94
H C+ I+IP C DIAYN+TIMPNLLGH+ QEDAG EVHQ++PLVKV+CSP+L+FFLCSM
Sbjct: 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSM 61
Query: 95 YAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 154
YAPVCT+LE+AIPPCR+LC AR GCE LMN FGFQWPE C FP+ +G +CVG
Sbjct: 62 YAPVCTVLEQAIPPCRSLCERARQGCEALMNKFGFQWPERLRCENFPVHGAG--EICVGQ 119
Query: 155 N 155
N
Sbjct: 120 N 120
>gnl|CDD|143573 cd07464, CRD_FZ2, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 2 (Fz2) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 2 (Fz2) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz2 is involved in the Wnt/beta-catenin
signaling pathway and in the activation of protein
kinase C and calcium/calmodulin-dependent protein kinase
(CaM kinase).
Length = 127
Score = 184 bits (469), Expect = 2e-58
Identities = 81/121 (66%), Positives = 96/121 (79%), Gaps = 2/121 (1%)
Query: 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 94
H C+ I+IP C DIAYN+TIMPNLLGH+ QEDAG EVHQ++PLVKV+CS +L+FFLCSM
Sbjct: 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSM 61
Query: 95 YAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 154
YAPVCT+LE+AIPPCR++C AR GCE LMN FGFQWPE C F P G + +CVG
Sbjct: 62 YAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCENF--PRHGAEQICVGQ 119
Query: 155 N 155
N
Sbjct: 120 N 120
>gnl|CDD|214498 smart00063, FRI, Frizzled. Drosophila melanogaster frizzled
mediates signalling that polarises a precursor cell
along the anteroposterior axis. Homologues of the
N-terminal region of frizzled exist either as
transmembrane or secreted molecules. Frizzled homologues
are reported to be receptors for the Wnt growth factors.
(Not yet in MEDLINE: the FRI domain occurs in several
receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr.
Biol. 8 R405-R406 (1998); Masiakowski, P. and
Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Length = 113
Score = 164 bits (416), Expect = 1e-50
Identities = 65/106 (61%), Positives = 80/106 (75%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
CE ITIP C+D+ YN T MPNLLGH+ QE+AG E+ Q+ PL+ V+CSPDL+FFLCS+YAP
Sbjct: 1 CEPITIPLCKDLGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAP 60
Query: 98 VCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLP 143
+CT R I PCR+LC +AR GCE LM FGF WPE C +FP+
Sbjct: 61 ICTEDLRPILPCRSLCEAAREGCEPLMEKFGFPWPEFLRCDRFPVQ 106
>gnl|CDD|143565 cd07456, CRD_FZ5_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 5. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and
similar proteins. This domain is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. The CRD domain
is well conserved in metazoans - 10 frizzled proteins
have been identified in mammals, 4 in Drosophila and 3
in Caenorhabditis elegans. Very little is known about
the mechanism by which CRD domains interact with their
ligands. The domain contains 10 conserved cysteines.
Length = 120
Score = 158 bits (402), Expect = 2e-48
Identities = 65/123 (52%), Positives = 83/123 (67%), Gaps = 6/123 (4%)
Query: 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYA 96
KCE ITIP C+ I YN T MPN H QE+AG EVHQ++PLV+++CSPDL+FFLCSMY
Sbjct: 1 KCEEITIPMCKGIGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYT 60
Query: 97 PVCTILE---RAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 153
P+C LE + +PPCR++C AR+GC +M +GF WPE C P PD+LC+
Sbjct: 61 PIC--LEDYDKPLPPCRSVCERARDGCAPIMRQYGFAWPERMSCDALPE-GGDPDNLCMD 117
Query: 154 DNE 156
N
Sbjct: 118 RNN 120
>gnl|CDD|201766 pfam01392, Fz, Fz domain. Also known as the CRD (cysteine rich
domain), the C6 box in MuSK receptor. This domain of
unknown function has been independently identified by
several groups. The domain contains 10 conserved
cysteines.
Length = 108
Score = 154 bits (390), Expect = 1e-46
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
CE I P C+ + YN T+MPNLLGH Q++A ++ + PLV VKCSP LQFFLCS+YAP
Sbjct: 1 CEPIRGPLCKGLGYNYTLMPNLLGHETQKEAELQLTAWTPLVNVKCSPALQFFLCSLYAP 60
Query: 98 VCTILERA-IPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLP 143
VCT R IPPCR+LC + + GCE +M FGF WPE ECSK P P
Sbjct: 61 VCTEGLRTPIPPCRSLCEAVKEGCEPVMETFGFGWPELLECSKLPSP 107
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz
(frizzled) domain. CRD_FZ is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines.
Length = 119
Score = 139 bits (353), Expect = 3e-41
Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYA 96
KCE I +P C+ + YN T PNLLGH QE+A E+ + PLV C PDL+FFLCS+Y
Sbjct: 1 KCEPIPLPLCRGLPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYF 60
Query: 97 PVCTI-LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 153
P CT +R IPPCR+LC R+ CE LM FGF WPE +C +F P S + LC+
Sbjct: 61 PECTPDGDRPIPPCRSLCEEVRDSCEPLMLAFGFPWPEPLDCDRF--PDSNEEGLCIS 116
>gnl|CDD|143570 cd07461, CRD_FZ8, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 8 (Fz8) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 8 (Fz8) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin
signaling pathways controlling the transcriptional
activation of target genes Siamois and Xnr3 in the
animal caps of late blastula.
Length = 125
Score = 138 bits (348), Expect = 2e-40
Identities = 57/116 (49%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
C+ IT+P C+ I YN T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSMY P
Sbjct: 5 CQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 64
Query: 98 VC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
+C ++ +PPCR++C A+ GC LM +GF WP+ C P PD+LC+
Sbjct: 65 ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFPWPDRMRCDLLP-EQGNPDTLCM 119
>gnl|CDD|143566 cd07457, CRD_FZ9_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 9. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors,
and similar proteins. This domain is required for
binding Wnt proteins, which play fundamental roles in
many aspects of early development, such as cell and
tissue polarity, neural synapse formation, and the
regulation of proliferation. Fz proteins serve as Wnt
receptors for multiple signal transduction pathways,
including both beta-catenin dependent and -independent
cellular signaling, as well as the planar cell polarity
pathway and Ca(2+) modulating signaling pathway. The CRD
domain is well conserved in metazoans - 10 frizzled
proteins have been identified in mammals, 4 in
Drosophila and 3 in Caenorhabditis elegans. Very little
is known about the mechanism by which CRD domains
interact with their ligands. The domain contains 10
conserved cysteines.
Length = 121
Score = 137 bits (346), Expect = 4e-40
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
KCE ITIP CQ I YN T MPNLLGH Q +A +H++ PLV+ C+ L+FFLCS+Y
Sbjct: 1 GKCERITIPMCQGIGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLY 60
Query: 96 APVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
AP+CT + IP CR++C AR+ C +M F F WP++ +C + P + P LC+
Sbjct: 61 APMCTEQVSIPIPACRSMCEQARDKCSPIMEQFSFSWPDSLDCDRLP-RKNDPKDLCM 117
>gnl|CDD|143557 cd07448, CRD_FZ4, Cysteine-rich Wnt-binding domain of the frizzled
4 (Fz4) receptor. The cysteine-rich domain (CRD) is an
essential extracellular portion of the frizzled 4 (Fz4)
receptor, and is required for binding Wnt proteins,
which play fundamental roles in many aspects of early
development, such as cell and tissue polarity, neural
synapse formation, and the regulation of proliferation.
Fz proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and the Ca(2+)
modulating signaling pathway. CRD containing Fzs have
been found in diverse species from amoebas to mammals.
10 different frizzled proteins are found in vertebrata.
Frizzled 4 (Fz4) activates the
Ca(2+)/calmodulin-dependent protein kinase II and
protein kinase C of the Wnt/Ca(2+) signaling pathway
during retinal angiogenesis. Mutations in Fz4 lead to
familial exudative vitreoretinopathy (FEVR), a
hereditary ocular disorder characterized by failure of
the peripheral retinal vascularization. In addition, the
interplay between Fz4 and norrin as a receptor-ligand
pair plays an important role in vascular development in
the retina and inner ear in a Wnt-independent manner.
Length = 126
Score = 136 bits (345), Expect = 6e-40
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYA 96
+CE I I CQ + YN T MPNL+GH Q DA ++ + PL++ CS L+FFLCS+Y
Sbjct: 3 RCEPIRIEMCQGLGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYV 62
Query: 97 PVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155
P+CT + I PCR LCLS + C ++ +FGF WPE CSKFP ++ G
Sbjct: 63 PMCTEKVPVPIGPCRPLCLSVKKRCLPVLKEFGFPWPEALNCSKFPPQNNHNHMCMEGPG 122
Query: 156 EEG 158
+E
Sbjct: 123 DEE 125
>gnl|CDD|143569 cd07460, CRD_FZ5, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 5 (Fz5) receptor.proteins. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 5 (Fz5) receptor, and is required for
binding Wnt proteins, which play fundamental roles in
many aspects of early development, such as cell and
tissue polarity, neural synapse formation, and the
regulation of proliferation. Fz proteins serve as Wnt
receptors for multiple signal transduction pathways,
including both beta-catenin dependent and -independent
cellular signaling, as well as the planar cell polarity
pathway and Ca(2+) modulating signaling pathway. CRD
containing Fzs have been found in diverse species from
amoebas to mammals. 10 different frizzled proteins are
found in vertebrata. Fz5 plays critical regulating roles
in the yolk sac and placental angiogenesis, in the
maturation of the Paneth cell phenotype, in governing
the neural potential of progenitors in the developing
retina, and in neuronal survival in the parafascicular
nucleus.
Length = 127
Score = 135 bits (341), Expect = 2e-39
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
C+ IT+P C+ I YN T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSMY P
Sbjct: 5 CQEITVPMCKGIGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTP 64
Query: 98 VC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155
+C + +PPCR++C A+ GC LM +GF WPE C + P+ P++LC+ N
Sbjct: 65 ICLPDYRKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMNCDRLPVLGD-PETLCMDYN 122
>gnl|CDD|143571 cd07462, CRD_FZ10, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 10 (Fz10) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 10 (Fz10) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. The cellular functon of Fz10 is unknown.
Length = 127
Score = 122 bits (308), Expect = 2e-34
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
+C+ I IP C+DI YN T MPNL+GH Q +A ++H++ PLV+ C L+FFLCS+Y
Sbjct: 3 GRCQPIEIPMCKDIGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLY 62
Query: 96 APVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
AP+CT + IP CR +C AR C +M F F+WP++ +CSK P + P+ LC+
Sbjct: 63 APMCTEQVSTPIPACRVMCEQARLKCSPIMEQFNFKWPDSLDCSKLP-NKNDPNYLCM 119
>gnl|CDD|143572 cd07463, CRD_FZ9, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 9 (Fz9) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 9 (Fz9) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz9 may play a signaling role in lymphoid
development and maturation, particularly at points where
B cells undergo self-renewal prior to further
differentiation.
Length = 127
Score = 121 bits (304), Expect = 6e-34
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
AKC+ + IP C+ I YN T MPN LGH Q +A +++++ PLV+ C L+FFLCS+Y
Sbjct: 3 AKCQPVVIPMCRGIGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLY 62
Query: 96 APVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
AP+CT + +IP CR +C AR C +M F F WPE+ +CS+ P + P++LC+
Sbjct: 63 APMCTDQVSTSIPACRPMCEQARQKCSPIMEQFNFGWPESLDCSRLP-TRNDPNALCM 119
>gnl|CDD|216557 pfam01534, Frizzled, Frizzled/Smoothened family membrane region.
This family contains the membrane spanning region of
frizzled and smoothened receptors. This membrane region
is predicted to contain seven transmembrane alpha
helices. Proteins related to Drosophila frizzled are
receptors for Wnt (mediating the beta-catenin signalling
pathway), but also the planar cell polarity (PCP)
pathway and the Wnt/calcium pathway. The predominantly
alpha-helical Cys-rich ligand-binding region (CRD) of
Frizzled is both necessary and sufficient for Wnt
binding. The smoothened receptor mediates hedgehog
signalling.
Length = 328
Score = 125 bits (315), Expect = 4e-33
Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 227 MFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSIT 286
FS EK+ +R W+G WSALC S LFTVLTF+ID RFRYPERPII+LS CYL+VS+
Sbjct: 1 PLFSRDEKRFARSWIGWWSALCFLSTLFTVLTFLIDWKRFRYPERPIIYLSACYLIVSLG 60
Query: 287 YIIGFMSG-DKISCTKP 302
Y+IGF+ G + ++C K
Sbjct: 61 YLIGFVLGRESVACRKA 77
>gnl|CDD|143558 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 3 (Fz3) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 3 (Fz3) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz3 plays a vital role in the
anterior-posterior guidance of commissural axons.
Knockout mice without Fz3 show defects in fiber tracts
in the rostral CNS.
Length = 127
Score = 118 bits (296), Expect = 9e-33
Identities = 52/104 (50%), Positives = 65/104 (62%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
CE IT+ CQD+ YN T MPNLL H Q+ A + + P+V ++CS D + FLC++YAP
Sbjct: 5 CEPITLRMCQDLPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAP 64
Query: 98 VCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
VC R PCR LC A + C KLM FG WPE ECS+FP
Sbjct: 65 VCMEYGRVTLPCRRLCQRAYSECSKLMEMFGVPWPEDMECSRFP 108
>gnl|CDD|143551 cd07442, CRD_SFRP4, Cysteine-rich domain of the secreted
frizzled-related protein 4 (SFRP4), a Wnt antagonist.
The cysteine-rich domain (CRD) is an essential part of
the secreted frizzled-related Protein 4 (SFRP4), which
regulates the activity of Wnt proteins, key players in a
number of fundamental cellular processes such as
embryogenesis and postnatal development. SFRPs
antagonize the activation of Wnt signaling by binding to
the CRDs domains of frizzled (Fz) proteins, thereby
preventing Wnt proteins from binding to these receptors.
SFRPs are also known to have functions unrelated to Wnt,
as enhancers of procollagen cleavage by the TLD
proteinases. SFRPs and Fz proteins both contain CRD
domains, but SFRPs lack the seven-pass transmembrane
domain which is an integral part of Fzs.
Length = 127
Score = 112 bits (282), Expect = 1e-30
Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
A CE + IP C+ + +N T MPN L HS QE+A + QY LV CSP L FFLC+MY
Sbjct: 3 APCEAVRIPMCRHMPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMY 62
Query: 96 APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG 146
AP+CT+ L I PCR++C AR+GCE +M + WPE+ C P+ G
Sbjct: 63 APICTLEFLYDPIKPCRSVCQRARDGCEPIMRRYNHSWPESLACDDLPVYDRG 115
>gnl|CDD|143559 cd07450, CRD_FZ6, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 6 (Fz6) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 6 (Fz6) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Frizzled 6 (Fz6) is expressed in the skin
and hair follicles and controls hair patterning in
mammals using a Fz-dependent tissue polarity system,
which is similar to the one that patterns the Drosophila
cuticle.
Length = 127
Score = 109 bits (273), Expect = 3e-29
Identities = 43/104 (41%), Positives = 60/104 (57%)
Query: 38 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
CE IT+P C + YN T PNL+GH Q+ A E+ + PL ++CSP++ FLC + P
Sbjct: 5 CEPITVPRCLKMPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVP 64
Query: 98 VCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
CT + PCR LC + C+KL++ FG WPE EC +
Sbjct: 65 TCTEQIHVVRPCRELCEKVYSDCKKLIDTFGISWPEELECDRLQ 108
>gnl|CDD|143550 cd07441, CRD_SFRP3, Cysteine-rich domain of the secreted
frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt
antagonist. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related protein
3 (SFRP3, alias FRZB), which plays important roles in
embryogenesis and postnatal development as an antagonist
of Wnt proteins, key players in a number of fundamental
cellular processes. SFRPs antagonize the activation of
Wnt signaling by binding to the CRD domains of frizzled
proteins (Fz), thereby preventing Wnt proteins from
binding to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
SFRP3 regulates Wnt signaling activity in bone
development and homeostasis. It is also involved in the
control of planar cell polarity.
Length = 126
Score = 105 bits (264), Expect = 4e-28
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
A CE + IP C+ + +N T MPN L HS Q +A + Q+ L+ +CSPDL FFLC+MY
Sbjct: 2 ASCEPVRIPMCKSMPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMY 61
Query: 96 APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG 146
AP+CTI I PC+++C AR GCE ++ + WPE+ C + P+ G
Sbjct: 62 APICTIDFQHEPIKPCKSVCERARAGCEPVLIRYRHTWPESLACEELPVYDRG 114
>gnl|CDD|143555 cd07446, CRD_SFRP2, Cysteine-rich domain of the secreted
frizzled-related protein 2 (SFRP2), a regulator of Wnt
activity. The cysteine-rich-domain (CRD) is an
essential part of the secreted frizzled related protein
2 (SFRP2), which regulates the activity of Wnt
proteins, key players in a number of fundamental
cellular processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to CRD domains of frizzled (Fz)
proteins, thereby preventing Wnt proteins from binding
to these receptors. SFRPs and Fz proteins both contain
CRD domains, but SFRPs lack the seven-pass transmembrane
domain which is an integral part of Fzs. As a Wnt
antagonist, SFRP2 regulates Nkx2.2 expression in the
ventral spinal cord and anteroposterior axis elongation.
SFRP2 also has a Wnt-independent function as an enhancer
of procollagen cleavage by the TLD proteinases. SFRP2
binds both procollagen and TLD, thus facilitating the
enzymatic reaction by bringing together the proteinase
and its substrate.
Length = 128
Score = 102 bits (255), Expect = 1e-26
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 36 AKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCS 93
+ C+ I + C I Y +PNLLGH ++ + + PLV+ +C PD + FLCS
Sbjct: 3 SNCKPIPANMLLCHGIEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCS 62
Query: 94 MYAPVC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPL 142
++APVC L+ AI PCR+LC + ++GC +M+ FGF WP+ +C++FPL
Sbjct: 63 LFAPVCLDDLDEAIQPCRSLCEAVKDGCAPVMSAFGFPWPDMLDCTRFPL 112
>gnl|CDD|143553 cd07444, CRD_SFRP5, Cysteine-rich domain of the secreted
frizzled-related protein 5 (SFRP5), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related Protein
5 (SFRP5), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRD domains of frizzled (Fz)
proteins, thereby preventing Wnt proteins from binding
to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
Length = 127
Score = 100 bits (250), Expect = 6e-26
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 43 IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL 102
+P C ++ Y +PNLL H + + + PL+ +C D Q FLCS++APVC L
Sbjct: 14 LPLCHNVGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVC--L 71
Query: 103 ERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPL 142
+R I PCR+LC + R+ C +M +GF WPE C KFPL
Sbjct: 72 DRPIYPCRSLCEAVRDSCAPVMESYGFPWPEMLHCHKFPL 111
>gnl|CDD|143552 cd07443, CRD_SFRP1, Cysteine-rich domain of the secreted
frizzled-related protein 1 (SFRP1), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related protein
1 (SFRP1), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRDs domains of frizzled
(Fz) proteins, thereby preventing Wnt proteins from
binding to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
SFRP1 is expressed in many tissues and is involved in
the regulation of Wnt signaling in osteoblasts, leading
to enhanced trabecular bone formation in adults; it has
also been shown to control the growth of retinal
ganglion cell axons and the elongation of the
antero-posterior axis.
Length = 124
Score = 98.4 bits (245), Expect = 3e-25
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 35 HAKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLC 92
+C I + C ++ Y + ++PNLL H + + + PL+ C Q FLC
Sbjct: 4 PPQCVDIPADLRLCHNVGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLC 63
Query: 93 SMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPL 142
S++APVC L+R + PCR LC + R+ CE +M FGF WPE +C KFP
Sbjct: 64 SLFAPVC--LDRPVYPCRWLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPE 111
>gnl|CDD|143562 cd07453, CRD_crescent, Cysteine-rich domain of the crescent
protein. The cysteine-rich domain (CRD) is an essential
part of the crescent protein, a member of the secreted
frizzled-related protein (SFRP) family, which regulates
convergent extension movements (CEMs) during
gastrulation and neurulation. Xenopus laevis crescent
efficiently forms inhibitory complexes with Wnt5a and
Wnt11, but this effect is cancelled in the presence of
another member of the SFRP family, Frzb1. A potential
role for Crescent in head formation is to regulate a
non-canonical Wnt pathway positively in the adjacent
posterior mesoderm, and negatively in the overlying
anterior neuroectoderm.
Length = 135
Score = 94.2 bits (234), Expect = 1e-23
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 36 AKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCS 93
+ C I ++ C DI Y+E +PNLL H + + + PL+ +C PD + FLCS
Sbjct: 1 SPCMRIPKSMALCYDIGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCS 60
Query: 94 MYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
++AP+C +R I PCR+LC + R+ C LM +G+ WPE C KFP
Sbjct: 61 LFAPIC--WDRPIYPCRSLCEAVRSSCAPLMACYGYPWPEILHCDKFP 106
>gnl|CDD|143561 cd07452, CRD_sizzled, Cysteine-rich domain of the sizzled protein.
The cysteine-rich domain (CRD) is an essential part of
the sizzled protein, which regulates bone morphogenetic
protein (Bmp) signaling by stabilizing chordin, and
plays a critical role in the patterning of vertebrate
and invertebrate embryos. Sizzled also functions in the
ventral region as a Wnt inhibitor and modulates
canonical Wnt signaling. Sizzled proteins belong to the
secreted frizzled-related protein family (SFRP), and
have be identified in the genomes of birds, fishes and
frogs, but not mammals.
Length = 141
Score = 89.2 bits (221), Expect = 1e-21
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 37 KCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 94
KC I + CQD+ Y+E +PNLLGH+ + + + L+ C P + FLCS+
Sbjct: 8 KCVPIPPEMSMCQDVGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSL 67
Query: 95 YAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
+APVC L+ I PCR++C++ R+ C ++ G WPE+ +C +FP
Sbjct: 68 FAPVC--LDTFIQPCRSMCVAVRDSCAPVLACHGHSWPESLDCDRFP 112
>gnl|CDD|143579 cd07888, CRD_corin_2, One of two cysteine-rich domains of the corin
protein, a type II transmembrane serine protease . The
cysteine-rich domain (CRD) is an essential component of
corin, a type II transmembrane serine protease which
functions as the convertase of the pro-atrial
natriuretic peptide (pro-ANP) in the heart. Corin
contains two CRDs in its extracellular region, which
play an important role in recognition of the
physiological substrate, pro-ANP. This model
characterizes the second (C-terminal) CRD.
Length = 122
Score = 88.1 bits (218), Expect = 2e-21
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 37 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAG--FEVHQYFPLVKVKCSPDLQFFLCSM 94
+CE IT+ C ++ YN T PN LGH Q++A +E + LV+ C L FF C++
Sbjct: 1 QCEPITLELCMNLPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTI 60
Query: 95 YAPVC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
P C + ++ IPPCR+LC +++ CE ++ G QWPE +C++FP
Sbjct: 61 LVPKCDPVTQQRIPPCRSLCRNSKERCESVLGIVGLQWPEDTDCAQFP 108
>gnl|CDD|143563 cd07454, CRD_LIN_17, Cysteine-rich domain (CRD) of LIN_17. A
cysteine-rich domain (CRD) is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines. The protein
lin-17 is involved in cell type specification during
Caenorhabditis elegans vulval development.
Length = 124
Score = 86.0 bits (212), Expect = 1e-20
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
KC I I C+D+ YN T PN + H+ Q + PL+K KC P + FF+CS++
Sbjct: 3 GKCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVF 62
Query: 96 APVC-TILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFP 141
AP+C + +A+ C+++C + C ++ +FG WPE C++FP
Sbjct: 63 APMCPIGMPQAVTSCKSVCEQVKADCFSILEEFGIGWPEPLNCAQFP 109
>gnl|CDD|143556 cd07447, CRD_Carboxypeptidase_Z, Cysteine-rich domain of
carboxypeptidase Z, a member of the carboxypeptidase E
family. The cysteine-rich-domain (CRD) is an essential
part of carboxypeptidase Z, a member of the
carboxypeptidase E family of metallocarboxypeptidases.
This is a group of Zn-dependent enzymes implicated in
the intra- and extracellular processing of proteins.
Carboxypeptidase Z removes C-terminal basic amino acid
residues from its substrates, particularly arginine. The
CRD acts as a ligand-binding domain for Wnts involved in
developmental processes. CPZ binds and may process
Wnt-4, CPZ has also been found to enhance the induction
of the homeobox gene Cdx1. During vertebrate
embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt
reporter gene essential for patterning of somites and
limb development.
Length = 128
Score = 70.9 bits (174), Expect = 3e-15
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQED--AGFE------VHQYFPLVKVKCSPDL 87
A C + + +C D++Y +T PNLLGH +E AG E +H L+ +C+PD+
Sbjct: 2 ATCTDLLLSYCSDVSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHG---LLGGECNPDI 58
Query: 88 QFFLCSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKF 140
+ CS+ AP C ++ I PCR+ C + R C + WP +C +F
Sbjct: 59 RLLGCSVLAPRCE-NDKVIKPCRSTCEALRKRCSHAFDAIQMAWPYFLDCDRF 110
>gnl|CDD|143554 cd07445, CRD_corin_1, One of two cysteine-rich domains of the corin
protein, a type II transmembrane serine protease . The
cysteine-rich domain (CRD) is an essential component of
corin, a type II transmembrane serine protease which
functions as the convertase of the pro-atrial
natriuretic peptide (pro-ANP) in the heart. Corin
contains two CRDs in its extracellular region, which
play an important role in recognition of the
physiological substrate, pro-ANP. This model
characterizes the first (N-terminal) CRD.
Length = 130
Score = 54.2 bits (130), Expect = 4e-09
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFP-LVKVKCSPDLQFFLCSM 94
+ C IT CQ + Y+ T+ P+LL E F ++F L ++ C + F CS+
Sbjct: 3 SACMNITHSQCQMLPYHSTLKPSLLSVKNMEMEKF--LKFFSYLHRLSCYQHIMLFGCSL 60
Query: 95 YAPVCTIL---ERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKF 140
P C + PCR+ C +A+ GCE ++ WP+ CS+F
Sbjct: 61 ALPECISDGDDRHGLLPCRSFCEAAKEGCEPVLGMVNASWPDFLRCSQF 109
>gnl|CDD|143564 cd07455, CRD_Collagen_XVIII, Cysteine-rich domain of the variant 3
of collagen XVIII (V3C18 ). The cysteine-rich domain
(CRD) is an essential part of the variant 3 of collagen
XVIII (V3C18), which regulates major cellular functions
such as the differential epithelial morphogenesis of
early lung and kidney development. V3C18 is a 170 kD
protein, which is proteolotically processed into the
CRD-containing 50 kD glucoprotein precursor that binds
Wnt3a through its CRD domain and suppresses the
Wnt3a-induced stabilization of beta catenin. Full-length
V3C18 is unable to inhibit Wnt signaling.
Length = 123
Score = 50.6 bits (121), Expect = 5e-08
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 42 TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVC-T 100
++PFC + +PN L H+ E+ + ++ L++ C P L++F C + P C
Sbjct: 11 SLPFCSRLGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGG 70
Query: 101 ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 152
PPCR C ++ C L+ G + P C+ P D CV
Sbjct: 71 GPPPPPPPCRQFCEVLQDSCWNLLE--GGRLP--VACASLP---EQEDGYCV 115
>gnl|CDD|143560 cd07451, CRD_SMO, Cysteine-rich domain of the smoothened receptor
(Smo) integral membrane protein. The cysteine-rich
domain (CRD) is part of the smoothened receptor (Smo),
an integral membrane protein and one of the key players
in the Hedgehog (Hh) signaling pathway, critical for
development, cell growth and migration, as well as stem
cell maintenance. The CRD of Smo is conserved in
vertebrates and can also be identified in invertebrates.
The precise function of the CRD in Smo is unknown.
Mutations in the Drosophila CRD disrupt Smo activity in
vivo, while deletion of the CRD in mammalian cells does
not seem to affect the activity of overexpressed Smo.
Length = 132
Score = 36.6 bits (85), Expect = 0.004
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 35 HAKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKV-KCSPDLQFFL 91
AKCE + T + Y T + + + QE+ ++H + L V KC +Q L
Sbjct: 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLL 61
Query: 92 CSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG 146
C++Y P C + P + +C + R C+ + N+ G WP+ C P G
Sbjct: 62 CALYMPKC-ENGKVELPSQEMCQATRGPCKIVENERG--WPDFLRCDNDRFPPRG 113
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 32.9 bits (76), Expect = 0.28
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 266 FRYPERPI-IFLSVCYLMVSITYIIGFMSG 294
R RP+ + +V L++S Y++ M G
Sbjct: 104 DRLGSRPVRLVAAVSTLVISFFYLVAQMVG 133
>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein. This family consists of
several strabismus (STB) or Van Gogh-like (VANGL)
proteins 1 and 2. The exact function of this family is
unknown. It is thought, however that STB1 gene and STB2
may be potent tumour suppressor gene candidates.
Length = 507
Score = 30.5 bits (69), Expect = 1.5
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 194 FVCPLHFKIPPGLDYELKVGDKVEKNCGAPCDGMFFSEKEKKMSRLWVGIWSA------- 246
FV PL F + P + + ++ + CG C+G+ S K + L + W+
Sbjct: 107 FVTPLAFIVLPQVGWRDRL-----EPCGTACEGLLISLAFKLLI-LLIASWALFLRPPRA 160
Query: 247 ----LCATSCLFTVLTFMI 261
+ L VL F+
Sbjct: 161 DMPRIFVFRALLLVLVFLF 179
>gnl|CDD|204462 pfam10361, DUF2434, Protein of unknown function (DUF2434). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 296
Score = 29.6 bits (67), Expect = 2.2
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 226 GMFFSEKEKK---MSRLWVGIWS---ALCAT-SCLFTVLTFMIDSDRFRYPERPIIFLSV 278
G + EK+ + R W W C S + ID DR P+I S
Sbjct: 72 GRLYLPLEKRFYLVGRRWQWYWLLFVGACGAISGFMS-----IDVDRNYLQGLPLILQSF 126
Query: 279 CY 280
Y
Sbjct: 127 FY 128
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 30.0 bits (68), Expect = 2.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 266 FRYPERPIIFLSVC-YLMVSITYIIGFMSG 294
RY P L+ ++VS Y+I M G
Sbjct: 112 DRYKSNPARLLAAIGTIIVSFLYLIAQMVG 141
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 28.9 bits (65), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 174 KDLRPGVSYPNLPENAKDY-GFVCPLHFKIPPGLDY 208
K R V Y L + K+Y GF CP F + GLD+
Sbjct: 136 KRARRKVKY-ELVGDGKEYVGFECPDEFVVGYGLDF 170
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 28.6 bits (64), Expect = 4.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 176 LRPGVSYPNLPENAKDYGFVCPLHFKI 202
L P V++P+LPEN KD KI
Sbjct: 266 LEPQVAFPHLPENTKDISEAGKEEIKI 292
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 28.2 bits (63), Expect = 6.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 306 PPEHPHLAM--PRAIAFIHKKLTELNKNLVQNKRAVMILGTE 345
P E P A+ PR + ++L + + R ++LG +
Sbjct: 51 PKESPRYAVKNPRYVLAATEQLAPKVYEVFEEGRFPLVLGGD 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,616,026
Number of extensions: 1661262
Number of successful extensions: 1287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 47
Length of query: 350
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 252
Effective length of database: 6,590,910
Effective search space: 1660909320
Effective search space used: 1660909320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.3 bits)