RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9225
(350 letters)
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 145 bits (366), Expect = 3e-43
Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 35 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 94
C+ IT+P C+ I Y T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSM
Sbjct: 7 ELACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSM 66
Query: 95 YAPVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 153
Y P+C ++ +PPCR++C A+ GC LM +GF WP+ C + P PD+LC+
Sbjct: 67 YTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP-EQGNPDTLCMD 125
Query: 154 DNE 156
Sbjct: 126 YER 128
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 139 bits (350), Expect = 7e-41
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 36 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
A CE + IP C+ + + T MPN L HS Q +A + Q+ L+ CSPDL FFLC+MY
Sbjct: 3 AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 62
Query: 96 APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 153
AP+CTI I PC+++C AR GCE ++ + WPE+ C + P+ G +C+
Sbjct: 63 APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYDRG---VCIS 119
Query: 154 DNE 156
Sbjct: 120 PEA 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 79/494 (15%), Positives = 135/494 (27%), Gaps = 221/494 (44%)
Query: 2 FLVSKCSFLLSVLISVSVGDQITHISD--HDILPIHAKCETITIPFCQDIAYNETIMP-N 58
+S S +L+ + + + + + ILP T F D +E P
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP------EPTEGFAAD---DEPTTPAE 59
Query: 59 L----LGHSKQEDAGFEVHQYFPLVKVKCSPDLQFF------------------------ 90
L LG+ +V Q+ ++ + L F
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLC----LTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 91 ------LCSMYAPVCTILERAIPPCRNLCL--SARNGCEKLMNDFGFQ------WPE--- 133
L Y + +R N L + G +L+ FG Q + E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 134 --------------------------TFECSK-FPL----------PSSGPDS--LCVGD 154
T + K F PS+ PD L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--- 232
Query: 155 NEEGGKSSTLS-PMIE----SNF-------G---KDLRP----------GV--------- 180
S +S P+I +++ G +LR G+
Sbjct: 233 ------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 181 -SYPNLPENAKDY-------GFVC----PLHFKIPPGLDYELKVGDKVEKNCGAP----- 223
S+ + + + G C P + +PP + + D +E N G P
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSI-----LEDSLENNEGVPSPMLS 340
Query: 224 CDGMFFSEKEKKMSRL--------WVGIWSAL-CATSCLFTVLT--------FMI----- 261
+ + + +++ V I +L L V++ +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNL--VVSGPPQSLYGLNLTLRKA 396
Query: 262 ------DSDRFRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEHPHLAMP 315
D R + ER + F S +L V+ PF H HL +
Sbjct: 397 KAPSGLDQSRIPFSERKLKF-SNRFLPVAS----------------PF-----HSHL-LV 433
Query: 316 RAIAFIHKKLTELN 329
A I+K L + N
Sbjct: 434 PASDLINKDLVKNN 447
Score = 36.2 bits (83), Expect = 0.018
Identities = 69/411 (16%), Positives = 117/411 (28%), Gaps = 171/411 (41%)
Query: 3 LVSKCSFL--LSVLISVSVGDQITHIS-------DHDILP---IHA------KCETITIP 44
LV K FL +S L+ S Q + ++ L IHA + T+
Sbjct: 60 LVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 45 FCQDI--AY-------NETIMPN----LLGHSKQEDAGF--------EVHQYFPLVKVKC 83
+++ Y L + +A YF
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------ 171
Query: 84 SPDLQ-FFLCSMYAP-VCTILERAIPPCRNLCLSARNGCEKLMNDFGF---QWPETFECS 138
+L+ + Y V +++ + L + EK+ G +W E
Sbjct: 172 --ELRDLY--QTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQ-GLNILEWLEN---- 221
Query: 139 KFPLPSSGPDS--LCVGDNEEGGKSSTLS-PMIESNFGKDLRPGV----SYPNLPENAKD 191
PS+ PD L S +S P+I GV Y AK
Sbjct: 222 ----PSNTPDKDYLL---------SIPISCPLI----------GVIQLAHYVVT---AKL 255
Query: 192 YGFVCPLHFKIPPGLDYELKVGDKVEKNCGAPCDGMFFSEKEKKMSRLWVGIWSALC-AT 250
GF PG EL+ GA + G+ +A+ A
Sbjct: 256 LGF--------TPG---ELR-----SYLKGA--------------TGHSQGLVTAVAIAE 285
Query: 251 SCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPF---SPPP 307
+ DS + F +++ + IG C + + S PP
Sbjct: 286 T----------DS----WES----FFVSVRKAITVLFFIGV------RCYEAYPNTSLPP 321
Query: 308 -------EH------PHLA---MPRAIAFIHKKLTELNKNLVQNKRAVMIL 342
E+ P L+ + + + + + N +L K+ + L
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEISL 370
Score = 28.9 bits (64), Expect = 3.1
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 66/184 (35%)
Query: 115 SARN----GCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEGGKS--STLSPMI 168
+A++ + +GF S + + P +L + E GK S MI
Sbjct: 1641 AAQDVWNRADNHFKDTYGF--------SILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 169 -ESNFGKDLRPGVSYPNLPENAKDYGFVCPLHFKIPPG-LD----------------YEL 210
E+ L+ + + E++ Y F+ G L +E
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSY------TFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 211 KVGDKVEKNCGAPCDGMF--FSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSD---- 264
++ P D F S +G ++AL + + V++
Sbjct: 1747 -----LKSKGLIPADATFAGHS----------LGEYAALASLA---DVMSI---ESLVEV 1785
Query: 265 -RFR 267
+R
Sbjct: 1786 VFYR 1789
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.079
Identities = 57/389 (14%), Positives = 115/389 (29%), Gaps = 132/389 (33%)
Query: 15 ISVSVGDQITHISDHDILPIHAKCETITIPF-CQDIAYNETIMPNLLGHSKQE------- 66
+ G+ DIL + + F C+D+ + + ++L SK+E
Sbjct: 7 MDFETGEH--QYQYKDILSVFE--DAFVDNFDCKDV---QDMPKSIL--SKEEIDHIIMS 57
Query: 67 -DAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP-----VCTILERAIPPCRNLCL--SARN 118
DA + F + K +Q F+ + + I P + R+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 119 GCEKLMNDFGFQWPETFECSKFPLPSSGP-----DSLCVGDNEEG---------GKSSTL 164
+L ND + F +K+ + P +L + GK+ +
Sbjct: 118 ---RLYND-----NQVF--AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WV 166
Query: 165 SPMIESNFGKDLRPGVSYPNLPENAKDYGFVCPLHFKIPPGLDYELKVGDKVEKNCGAPC 224
+ + Y C + FKI + L + NC +P
Sbjct: 167 AL--------------------DVCLSYKVQCKMDFKI-----FWLNLK-----NCNSPE 196
Query: 225 DGMFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDS--DRFR-------YPERPIIF 275
+ + + +L I + S + + I S R Y ++
Sbjct: 197 TVL------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 276 LSV------------CYLMV-----SITYIIGFMSGDKIS---CTKPFSP---------- 305
L+V C +++ +T + + IS + +P
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 306 ----PPEHPHLA---MPRAIAFIHKKLTE 327
P + P PR ++ I + + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRD 339
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 30.9 bits (69), Expect = 0.60
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 94 MYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFE 136
+Y C + PC + C + GC D +W +
Sbjct: 253 VYCAHCLGVP-GARPCPDYCRNVLKGCLANQADLDAEWRNLLD 294
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 30.2 bits (67), Expect = 1.2
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 94 MYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFE 136
+ C PC N C++ GC ++F +W
Sbjct: 231 QHCGACKGYT--EKPCTNYCVNVIKGCLHYQHEFDSEWENFAM 271
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 180 VSYPNLPENAKDYG------FVCPLHFKIPPGLDYELKVGDKVEKNCG 221
++ ++ + A G CP PP + GD V CG
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCG 49
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural
genomics, IDP90671, center for structural genomic
infectious diseases; HET: MSE; 1.87A {Campylobacter
jejuni subsp} PDB: 3o6d_A*
Length = 260
Score = 28.4 bits (64), Expect = 3.4
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 13 VLISVSVGDQIT--------HISDHDILPIHAKCETITIPFCQDIAYNETIM 56
I GDQIT H D D+ I + P + A N+ I+
Sbjct: 31 AFIVARHGDQITLHVREDRRHAQDFDLENI---IKFCKSPVNLECALNDEIL 79
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 28.3 bits (64), Expect = 4.1
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 303 FSPPPEHPHLAMPRAIAFIHKKLTELNKNL 332
+P H PR I+ +L L L
Sbjct: 36 ATPRQWATHNMSPRQAELINAQLNGLQIAL 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 4.4
Identities = 20/135 (14%), Positives = 30/135 (22%), Gaps = 48/135 (35%)
Query: 21 DQITHISDHDI-LPIHAKCETITI-----PFCQDIAYNETIMPN--LLGHSKQEDAGFEV 72
D + S H + K E+ TI + + L GH K +
Sbjct: 1335 DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWM- 1393
Query: 73 HQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNL------------CLSARNGC 120
M + + IP RN L
Sbjct: 1394 ---------------------MNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTL 1432
Query: 121 EK------LMNDFGF 129
+ + FGF
Sbjct: 1433 KTDGVRAVSITSFGF 1447
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.15A {Colwellia
psychrerythraea}
Length = 135
Score = 27.2 bits (61), Expect = 4.5
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 7/46 (15%)
Query: 265 RFRYPERPIIFLS---VCYLMVSITYIIGFMSG--DKISCTKPFSP 305
+I +S L + T + + TKP +
Sbjct: 69 AEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTF--TKPINT 112
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.9 bits (63), Expect = 5.6
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 303 FSPPPEHPHLAMPRAIAFIHKKLTELNKNL 332
P P +A++ L EL +
Sbjct: 37 LDPQILQSADMAPARVAYLQGCLQELQQRY 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,343,273
Number of extensions: 312868
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 16
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.7 bits)