RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9225
         (350 letters)



>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3
           (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 125

 Score =  135 bits (341), Expect = 4e-40
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 5/120 (4%)

Query: 36  AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 95
           A CE + IP C+ + +  T MPN L HS Q +A   + Q+  L+   CSPDL FFLC+MY
Sbjct: 1   AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 60

Query: 96  APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 153
           AP+CTI      I PC+++C  AR GCE ++  +   WPE+  C + P+       +C+ 
Sbjct: 61  APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYD---RGVCIS 117


>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 122

 Score =  132 bits (333), Expect = 7e-39
 Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 38  CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAP 97
           C+ IT+P C+ I Y  T MPN   H  Q++AG EVHQ++PLV+++CSPDL+FFLCSMY P
Sbjct: 4   CQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTP 63

Query: 98  VCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 155
           +C    ++ +PPCR++C  A+ GC  LM  +GF WP+   C + P     PD+LC+   
Sbjct: 64  ICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP-EQGNPDTLCMDYE 121


>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
           (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 137

 Score = 26.5 bits (58), Expect = 3.1
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 265 RFRYPERPIIFLSVCYLMVSITYII-GFMSGDKISCTKPFSPPPEHPHLAMPRAIAFIHK 323
           + R PE  +I ++      +I   +     G     TKP     E   L + +AI   H+
Sbjct: 67  KERSPETEVIVITG---HGTIKTAVEAMKMGAYDFLTKPCM--LEEIELTINKAIE--HR 119

Query: 324 KLTELNKNLVQNK 336
           KL + N+ L + K
Sbjct: 120 KLRKENELLRREK 132


>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 76

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 205 GLDYELKVGDKVE 217
           G DYEL+  D V+
Sbjct: 60  GEDYELQFNDIVK 72


>d2a1va1 d.198.3.1 (A:4-134) Hypothetical protein DR2400
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 131

 Score = 25.3 bits (55), Expect = 7.6
 Identities = 3/21 (14%), Positives = 7/21 (33%)

Query: 77 PLVKVKCSPDLQFFLCSMYAP 97
            + +K  P+    L   +  
Sbjct: 54 LRLSLKVDPERGEELRQAHPQ 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,347,726
Number of extensions: 65533
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 9
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)