BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9226
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 22/290 (7%)
Query: 25 IFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
+ R+ A SP ++ +T+ T Q+ A +NR A+ A G+ KGD VAL++ N E
Sbjct: 21 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 80
Query: 83 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYG---AELTDAVQEISTSLG 139
F CL+ G +KLG + IN L + ++ +G IYG A + DA++ + G
Sbjct: 81 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPG 140
Query: 140 SNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+ L S P + G D L +YTSGTTG
Sbjct: 141 TVTDWIGADSLAER-------------LRSAAADEP---AVECGGDDNLFIMYTSGTTGH 184
Query: 200 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 259
PK V ++ + + A I R +DR PLP++H A I A+ G ++
Sbjct: 185 PKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243
Query: 260 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 309
+F A+ +S + + + +G + + ++ PE E A + R G
Sbjct: 244 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 485 DVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCV 544
D F+ G F +GD+ +D GYLY KDR D GENV E+E V+ +
Sbjct: 385 DAFDNG--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVA 442
Query: 545 VYGV 548
V G+
Sbjct: 443 VIGL 446
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 22/290 (7%)
Query: 25 IFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
+ R+ A SP ++ +T+ T Q+ A +NR A+ A G+ KGD VAL++ N E
Sbjct: 7 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 66
Query: 83 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYG---AELTDAVQEISTSLG 139
F CL+ G +KLG + IN L + ++ +G IYG A + DA++ + G
Sbjct: 67 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPG 126
Query: 140 SNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+ L S P + G D L +YTSGTTG
Sbjct: 127 TVTDWIGADSLAER-------------LRSAAADEP---AVECGGDDNLFIMYTSGTTGH 170
Query: 200 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 259
PK V ++ + + A I R +DR PLP++H A I A+ G ++
Sbjct: 171 PKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 229
Query: 260 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 309
+F A+ +S + + + +G + + ++ PE E A + R G
Sbjct: 230 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 279
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 14/272 (5%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
D T+AD++R +A P++ FM + T + A + R+A+ L G+ GD VA++ +
Sbjct: 5 DFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQ 64
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
N E + L ++ +G I +N+ L + + + S + G + D V + SL
Sbjct: 65 NCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL 124
Query: 139 GSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 198
G K + L S+ P S P G D + I+T+ G
Sbjct: 125 GGVKKAYAIGDGSGPFAPFKD-------LASDTPFSAPEF----GAADGFVIIHTAAVGG 173
Query: 199 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG-GAMCIGQALIFGCCVVI 257
P+ A+IS ++ D LPL+H G G M Q G VI
Sbjct: 174 RPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQA--GGASVI 231
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
KF + D+ +K TV M +L
Sbjct: 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 496 SGDLLVMDKWGYLYFKDRT--GDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+GD+ D GYL++ R + + GENV EVEG + D VV GV
Sbjct: 379 TGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGV 433
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 180/439 (41%), Gaps = 61/439 (13%)
Query: 24 DIFREHAVRSPNKVIFMF-----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
D+ +A SP K+ ++ +T + ++ YS++ ANFF+ G+ KGD V L L+
Sbjct: 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEIST 136
+R +F LGL KLG I H L+ +++ I AG+ + AE + + V E
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179
Query: 137 SLGS-NVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 195
G +K + E PT S +D + ++SG
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN----EDICLVYFSSG 235
Query: 196 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT---AGGAMCIGQAL--- 249
T G PK ++ + Y LG + + +D L++T +G C+ L
Sbjct: 236 TAGFPK--MVEHDNTYPLGHILTAKYWQNVEDD-----GLHYTVADSGWGKCVWGKLYGQ 288
Query: 250 -IFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH------ 300
I GC V + +F A N KY T + R+L+ ED +H
Sbjct: 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK-----EDLSHYNFSTL 343
Query: 301 NVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN---IDNQPGAIGFVSRLI 357
++ G L P++++ F++ F ++ E +G TE IA ++ +PG+IG +
Sbjct: 344 KYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG---KPT 399
Query: 358 PTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSA 417
P Y I ++ D CE GE G + + P ++ Y + +
Sbjct: 400 PG-YKIELMDRD-------------GRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445
Query: 418 KKIVTD-VFEIGDSAFLSD 435
++ D + GD A++ +
Sbjct: 446 EETWHDGYYHTGDMAWMDE 464
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 447 LCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWG 506
LC E G + + P ++ Y + + ++ D + + +GD+ MD+ G
Sbjct: 413 LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGY------YHTGDMAWMDEDG 466
Query: 507 YLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
YL+F R D + G V EVE + +C + GV
Sbjct: 467 YLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGV 508
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 150/370 (40%), Gaps = 46/370 (12%)
Query: 35 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 94
N ++ + + E TA++V + N++ G+++GD + L L + PEFV +LG S G
Sbjct: 46 NGDVYTYADVELTARRVASGLNKI-------GIQQGDVIMLFLPSSPEFVLAFLGASHRG 98
Query: 95 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXX 154
I N L + I A + V++ + S+VK+
Sbjct: 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE--SDVKVMCVDSAPDGC 156
Query: 155 XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 214
+V SP D + Y+SGTTGLPK ++++ L
Sbjct: 157 LHFSELTQADENEAPQVDISP---------DDVVALPYSSGTTGLPKGVMLTHKG---LI 204
Query: 215 GAIAYQIG-------FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 267
++A Q+ F ++D LP++H + L G ++I KF +
Sbjct: 205 TSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL 264
Query: 268 SDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIA 325
+ KYK ++ + + + +P+ + ++R++ G L ++ +F A
Sbjct: 265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324
Query: 326 QIGEFYGATEGNANIA--------NIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPI- 376
++G+ YG TE +A D +PGA G V R + VDP T +
Sbjct: 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR------NAEMKIVDPETGASLP 378
Query: 377 RNKKG-LCTR 385
RN+ G +C R
Sbjct: 379 RNQPGEICIR 388
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 128/354 (36%), Gaps = 33/354 (9%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 109
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 110 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 169
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 170 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 229
+ G D +YTSGTTG K A +S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 230 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
LP+YHT G + L + KF + TV + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRLL 257
Query: 290 STPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIG----EFYGATEGNANIANI-- 343
+P ++ + RL F +G P + R A+ G E YG TE N N +N
Sbjct: 258 QSPRLTKETTGHXRL-FISGSAPLLADTH--REWSAKTGHAVLERYGXTETNXNTSNPYD 314
Query: 344 -DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 396
D PGA+G P + +S DP T + + +G E P VF G
Sbjct: 315 GDRVPGAVG------PALPGVSARVTDPETGKEL--PRGDIGXIEVKGPNVFKG 360
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D F++GDL +D+ GY++ R D G NV E+E + + V GV
Sbjct: 375 DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGV 432
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ + + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVDDM 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ + + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVDDM 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ + + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVDDM 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ + + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVPDM 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 221 LDGTYVVIEEFRPVDALQLVQQEQVT 246
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ ++ + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPEATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVDDM 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 154/396 (38%), Gaps = 70/396 (17%)
Query: 29 HAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRP 81
HA+++PNK +FE E T +++ +VA + G++KGD+VA+ + P
Sbjct: 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 82 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 141
E + L +S++G I +++ NSL IN I E + I T +
Sbjct: 151 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 210
Query: 142 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYR-------------------- 181
L +L T+ PS+++
Sbjct: 211 DAL--------------RETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPC 256
Query: 182 --VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYH 237
V +D L +YTSG+TG PK V + Y LG + + F T +D F+T +
Sbjct: 257 TPVDSEDPLFLLYTSGSTGAPK-GVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 315
Query: 238 TAGGAMCIGQALIFGCCVVIRKKFSA----SNYFSDVCKYKCTVGQYIGEMCRYLLSTPE 293
G + L++GC ++ + A S Y+ + ++K T Y+ LL
Sbjct: 316 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT-QFYVAPTALRLLKRAG 374
Query: 294 KPEDKAHNVRLM-----FGNGLRPQIW---SEFVDRFRIAQIGEFYGATEGNANIANIDN 345
+ H+++ + G + ++W SE + + I + ++ G+ + +
Sbjct: 375 DSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG 434
Query: 346 -----QPGAIGFVSRLIPTIYPISIIRVDPVTSEPI 376
+PG+ F + I + +DP T E +
Sbjct: 435 GVTPMKPGSASF------PFFGIDAVVLDPNTGEEL 464
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYG 547
+ +GD DK GY++ R D G +ST E+E + +C V G
Sbjct: 505 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 103/267 (38%), Gaps = 34/267 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ + R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEXLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
N + V L L +LG + AL+N L+ L I +A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQS-- 120
Query: 137 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 197 TGLPKAAVI----SNHRYYFLGGAIAYQIGFRTKDRFYTPL---PLYHTAGGAMCIGQAL 249
TGLPKAA+I + R F + Q+G R R L PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLF----XSTQVGLR-HGRHNVVLGLXPLYHVVGFFAVLVAAL 219
Query: 250 IFGCCVVIRKKFSASNYFSDVCKYKCT 276
V+ ++F + V + + T
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVT 246
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+++ + A++GY+N+ + + ++ D + + D+ V G + R D
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAE------KLQDGWYRTSDVAVWTPEGTVRILGRVDDX 404
Query: 518 FRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ E+E V+ A + VV G+
Sbjct: 405 IISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 136/361 (37%), Gaps = 35/361 (9%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
+T V S ++A F G+ + D V L+L N PEFV +L S G N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXX 165
+ + I A D ++ + G +
Sbjct: 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQ 208
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--- 222
S S S + D + Y+SGTTGLPK +++ + L ++A Q+
Sbjct: 209 ---STTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLT---HKGLVTSVAQQVDGEN 262
Query: 223 ----FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVG 278
F + D LP++H + L G ++I KF + + + K TV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 279 QYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVD----RFRIAQIGEFYGAT 334
+ + + + E + ++R++ +G P + E D +F A++G+ YG T
Sbjct: 323 PMVPPIVLAIAKSSETEKYDLSSIRVV-KSGAAP-LGKELEDAVNAKFPNAKLGQGYGMT 380
Query: 335 EGNANIANIDNQPGAIGFVSRLIPTIYPI--SIIR------VDPVTSEPI-RNKKG-LCT 384
E +A ++GF P +++R VDP T + + RN+ G +C
Sbjct: 381 EAGPVLAM------SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICI 434
Query: 385 R 385
R
Sbjct: 435 R 435
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/478 (23%), Positives = 176/478 (36%), Gaps = 64/478 (13%)
Query: 46 WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
W +++ S + AN A GL++GD VA++L PE+ + LG + G+I +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFXXXXXXXXXXXXXXXXXX 163
+ +L+ + ++ A + G E+ V +++ S +KL
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKK---- 189
Query: 164 XXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG---GAIAYQ 220
LL+E T+ + G Q+ +TSGT+GLPK A H Y LG A
Sbjct: 190 ---LLNEASTTHHCV--ETGSQEASAIYFTSGTSGLPKMA---EHSYSSLGLKAKMDAGW 241
Query: 221 IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR--KKFSASNYFSDVCKY--KCT 276
G + D +T + + G C + KF + Y K
Sbjct: 242 TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSM 301
Query: 277 VGQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGNGLRPQIWSEFVDRFRIAQIG----EFY 331
+G I + R LL H + G L P E ++ +R AQ G E Y
Sbjct: 302 MGAPI--VYRMLLQQDLSSYKFPHLQNCVTVGESLLP----ETLENWR-AQTGLDIRESY 354
Query: 332 GATEGNANI---ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEP 388
G TE + +PG +G + + Y + II + KG P
Sbjct: 355 GQTETGLTCMVSKTMKIKPGYMGTAA----SCYDVQII-----------DDKG--NVLPP 397
Query: 389 GEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSDP-------PKNT 440
G G ++ P P + GYV+ D +A I D + +GD + +
Sbjct: 398 GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADD 457
Query: 441 TYNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGD 498
N G R P ++ +PA ++ D + V F + S FLS D
Sbjct: 458 IINSSGY--RIGPSEVENALM-EHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHD 512
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 459 KIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
++ P P + GYV+ D +A I D + +GD + D+ GY F R D
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG-------IKDEDGYFQFMGRADDI 458
Query: 518 FRWKGENVSTCEVEGVV 534
G + EVE +
Sbjct: 459 INSSGYRIGPSEVENAL 475
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/478 (23%), Positives = 176/478 (36%), Gaps = 64/478 (13%)
Query: 46 WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
W +++ S + AN A GL++GD VA++L PE+ + LG + G+I +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFXXXXXXXXXXXXXXXXXX 163
+ +L+ + ++ A + G E+ V +++ S +KL
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKK---- 189
Query: 164 XXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG---GAIAYQ 220
LL+E T+ + G Q+ +TSGT+GLPK A H Y LG A
Sbjct: 190 ---LLNEASTTHHCV--ETGSQEASAIYFTSGTSGLPKMA---EHSYSSLGLKAKMDAGW 241
Query: 221 IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR--KKFSASNYFSDVCKY--KCT 276
G + D +T + + G C + KF + Y K
Sbjct: 242 TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSM 301
Query: 277 VGQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGNGLRPQIWSEFVDRFRIAQIG----EFY 331
+G I + R LL H + G L P E ++ +R AQ G E Y
Sbjct: 302 MGAPI--VYRMLLQQDLSSYKFPHLQNCVTVGESLLP----ETLENWR-AQTGLDIRESY 354
Query: 332 GATEGNANI---ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEP 388
G TE + +PG +G + + Y + II + KG P
Sbjct: 355 GQTETGLTCMVSKTMKIKPGYMGTAA----SCYDVQII-----------DDKG--NVLPP 397
Query: 389 GEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSDP-------PKNT 440
G G ++ P P + GYV+ D +A I D + +GD + +
Sbjct: 398 GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADD 457
Query: 441 TYNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGD 498
N G R P ++ +PA ++ D + V F + S FLS D
Sbjct: 458 IINSSGY--RIGPSEVENALM-EHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHD 512
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 459 KIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
++ P P + GYV+ D +A I D + +GD + D+ GY F R D
Sbjct: 406 RVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG-------IKDEDGYFQFMGRADDI 458
Query: 518 FRWKGENVSTCEVEGVV 534
G + EVE +
Sbjct: 459 INSSGYRIGPSEVENAL 475
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 127/356 (35%), Gaps = 37/356 (10%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 109
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 110 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 169
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 170 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 229
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 230 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 290 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGNANIANI 343
+P + ++RL F +G P + WS + E YG TE N N +N
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTETNMNTSNP 312
Query: 344 ---DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 396
D PGA+G P + +S DP T + +G E P VF G
Sbjct: 313 YDGDRVPGAVG------PALPGVSARVTDPETGXEL--PRGDIGMIEVXGPNVFXG 360
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D F++GDL +D+ GY++ R D G NV E+E + + V GV
Sbjct: 375 DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 127/356 (35%), Gaps = 37/356 (10%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 109
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 110 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 169
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 170 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 229
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 230 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 290 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGNANIANI 343
+P + ++RL F +G P + WS + E YG TE N N +N
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTETNMNTSNP 312
Query: 344 ---DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 396
D PGA+G P + +S DP T + +G E P VF G
Sbjct: 313 YDGDRVPGAVG------PALPGVSARVTDPETGXEL--PRGDIGMIEVXGPNVFXG 360
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D F++GDL +D+ GY++ R D G NV E+E + + V GV
Sbjct: 375 DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 127/356 (35%), Gaps = 37/356 (10%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 109
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 110 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 169
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 170 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 229
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 230 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 290 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGNANIANI 343
+P + ++RL F +G P + WS + E YG TE N N +N
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTETNMNTSNP 312
Query: 344 ---DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 396
D PGA+G P + +S DP T + +G E P VF G
Sbjct: 313 YDGDRVPGAVG------PALPGVSARVTDPETGXEL--PRGDIGMIEVXGPNVFXG 360
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D F++GDL +D+ GY++ R D G NV E+E + + V GV
Sbjct: 375 DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGV 432
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 27/200 (13%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 96
Query: 78 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
E + L + K G I+ + + + ++ + + L + I
Sbjct: 97 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI--Q 154
Query: 138 LGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
V++F VP+ L+Y IYTSGTT
Sbjct: 155 FNGQVEIFEEDTIKIREGTNL-----------HVPSKSTDLAY---------VIYTSGTT 194
Query: 198 GLPKAAV-----ISNHRYYF 212
G PK + ISN + +F
Sbjct: 195 GNPKGTMLEHKGISNLKVFF 214
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 98/269 (36%), Gaps = 27/269 (10%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEW----TAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
++ D+ R A+ SPNK F N E T +Q++ ++ +A A+G K GD V L+
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLL 71
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 136
+ +LG G I I ++ L I S + + D +++ +
Sbjct: 72 FAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTA 131
Query: 137 -SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 195
L +N K S PTS + D YTSG
Sbjct: 132 DELNTNPKFLKIPAIALESIELNRSS-------SWQPTS-------IKSNDIAFLQYTSG 177
Query: 196 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR--FYTPLPLYHTAGGAMCIGQALIFGC 253
+T PK +S+H L F D ++ LP +H G CI + G
Sbjct: 178 STXHPKGVXVSHHN--LLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGI 235
Query: 254 CVVIRKKFS----ASNYFSDVCKYKCTVG 278
+ FS ++ + KYK T+
Sbjct: 236 QAIXXSPFSFLQNPLSWLKHITKYKATIS 264
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 34/241 (14%)
Query: 22 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 81
+ ++F A R+P+ V + E E T + +NR+A+ + G+ G V + LE
Sbjct: 77 VHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGF 136
Query: 82 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 141
+ V L + K G +++ L +S GA L + +S L
Sbjct: 137 DMVVALLAVLKAGGGYTMLDPQFPVERL-------ALSLEDTGAPLLVTSRPLSGRLTGT 189
Query: 142 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 201
L+ S+ P +L+ VG +D ++TSG+TG PK
Sbjct: 190 TTLYVEDEAA-----------------SDAPAG--NLATGVGPEDVACVMFTSGSTGRPK 230
Query: 202 AAVISNHRYY---FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
V+S HR +LG A GF + F P+ A G G AL+FG V++
Sbjct: 231 -GVMSPHRALTGTYLGQDYA---GFGPDEVFLQCSPVSWDAFGLELFG-ALLFGARCVLQ 285
Query: 259 K 259
Sbjct: 286 S 286
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 34/241 (14%)
Query: 22 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 81
+ ++F A R+P+ V + E E T + +NR+A+ + G+ G V + LE
Sbjct: 77 VHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGF 136
Query: 82 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 141
+ V L + K G +++ L +S GA L + +S L
Sbjct: 137 DMVVALLAVLKAGGGYTMLDPQFPVERL-------ALSLEDTGAPLLVTSRPLSGRLTGT 189
Query: 142 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 201
L+ S+ P +L+ VG +D ++TSG+TG PK
Sbjct: 190 TTLYVEDEAA-----------------SDAPAG--NLATGVGPEDVACVMFTSGSTGRPK 230
Query: 202 AAVISNHRYY---FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
V+S HR +LG A GF + F P+ A G G AL+FG V++
Sbjct: 231 -GVMSPHRALTGTYLGQDYA---GFGPDEVFLQCSPVSWDAFGLELFG-ALLFGARCVLQ 285
Query: 259 K 259
Sbjct: 286 S 286
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L N
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 81 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 122
EF + L +LG + + R + + + A +A+I
Sbjct: 86 KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L N
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 81 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 122
EF + L +LG + + R + + + A +A+I
Sbjct: 86 KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 43/228 (18%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
++ + +FRE A +P + E+ + +++A+S+ VA LA+G++ GD VAL +
Sbjct: 33 RNSDLVSLFREVAATAPERTALSAEDDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRM 92
Query: 78 ENRPEFVCLWLGLSKLG---VITALINHNLRQNSLLHCINIAGVSAFI----YGAELTDA 130
E + L + K G V L N R + +L +G SA I G +T
Sbjct: 93 SPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILAD---SGASALIGEPHEGCAVTRV 149
Query: 131 VQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIY 190
V+ + + + + P + + G +D
Sbjct: 150 VRTAAVAECKDAE-----------------------------PGPVTGAPGPGAEDMAYV 180
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 238
IYTSGTTG PK + + L F DR+ L+H+
Sbjct: 181 IYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHS 224
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 72/179 (40%), Gaps = 5/179 (2%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 245
D + +YTSGTTG PK AVI A+A + +D LPL+H G + I
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 246 GQALIFGCCVVIRKKFS---ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNV 302
L G V +FS A+ +D V + L + PE + A
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGAR 275
Query: 303 RLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIA-NIDNQPGAIGFVSRLIPTI 360
L+ G+ P E + ++ E YG TE N + D +P A G V +P +
Sbjct: 276 LLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRA-GTVGVPLPGV 333
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 120/308 (38%), Gaps = 26/308 (8%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT--ALINHNLRQN 107
+++ S +A +GL KGD+ + L N EF ++ L K GV+ AL +H RQ
Sbjct: 60 ELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH--RQY 117
Query: 108 SLLHCINIAGVSAFIYGAE---LTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXX 164
L +AFI + L + Q S +
Sbjct: 118 EL---------NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD 168
Query: 165 XPLLSEVPTSPPS-LSYRVGVQDKLIYIYTSG-TTGLPKAAVISNHRYYFLGGAIAYQIG 222
LL + T + + + D++ + SG +TG PK +++ Y + A A G
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG 228
Query: 223 FRTKDRFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVG 278
+ R LP H ++ GA+ + A G CVV+ N FS + +++ +
Sbjct: 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHA---GGCVVMAPNPEPLNCFSIIQRHQVNMA 285
Query: 279 QYIGEMCRYLLSTPEKPEDKAHNVRLM-FGNGLRPQIWSEFVDRFRIAQIGEFYGATEGN 337
+ L + +D+ +++L+ G P+ + V ++ + +G EG
Sbjct: 286 SLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL 345
Query: 338 ANIANIDN 345
N +D+
Sbjct: 346 VNYTRLDD 353
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 171 VPTSPPS--LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR 228
VP PS L+ + D ++TSGTTG KA + +Y +GF
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN 206
Query: 229 FYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL 288
+ + LP+YH +G ++ + +A+I G V I KF+A + + + T + + +L
Sbjct: 207 WLSVLPIYHISGLSVLL-RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL 265
Query: 289 LS 290
+
Sbjct: 266 MQ 267
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 483 VTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRD 542
+T FE G F +GD+ +D GY+ DR D GEN+ ++E V D
Sbjct: 368 LTGTFENG--YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISD 425
Query: 543 CVVYG 547
V G
Sbjct: 426 AVCVG 430
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 134/368 (36%), Gaps = 27/368 (7%)
Query: 34 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 91
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 42 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 101
Query: 92 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 151
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 102 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 161
Query: 152 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 206
P +E P S +DK I + +SG+TGLPK +
Sbjct: 162 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 216
Query: 207 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 262
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 217 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 274
Query: 263 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 320
+ + YK + + + + + N+ + G L ++
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 321 RFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIR 377
RF + I + YG TE + I D++PGA+G +++P + ++ +D + +
Sbjct: 335 RFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG---KVVP-FFEAKVVDLDTGKTLGVN 390
Query: 378 NKKGLCTR 385
+ LC R
Sbjct: 391 QRGELCVR 398
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 134/368 (36%), Gaps = 27/368 (7%)
Query: 34 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 91
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 37 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 92 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 151
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 156
Query: 152 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 206
P +E P S +DK I + +SG+TGLPK +
Sbjct: 157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 211
Query: 207 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 262
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 212 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 269
Query: 263 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 320
+ + YK + + + + + N+ + G L ++
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 321 RFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIR 377
RF + I + YG TE + I D++PGA+G +++P + ++ +D + +
Sbjct: 330 RFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG---KVVP-FFEAKVVDLDTGKTLGVN 385
Query: 378 NKKGLCTR 385
+ LC R
Sbjct: 386 QRGELCVR 393
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 120/341 (35%), Gaps = 33/341 (9%)
Query: 34 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 91
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 42 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGAL 101
Query: 92 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 151
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 102 FIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 161
Query: 152 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVI- 205
P +E P S +DK I + +SG+TGLPK +
Sbjct: 162 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 216
Query: 206 --------SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
S+ R G IA + +P +H G +G LI G VV+
Sbjct: 217 HRALAVRFSHARDPIFGNQIAPDTAI------LSVVPFHHGFGMFTTLGY-LISGFRVVL 269
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 315
+F + + YK + + +L + + N+ + G L ++
Sbjct: 270 MYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVG 329
Query: 316 SEFVDRFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFV 353
RF + I + YG TE + I D++PGA+G V
Sbjct: 330 EAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKV 370
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GYVN ++ ++ D SGD+ D+ + + DR ++KG V+ E+
Sbjct: 405 GYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAEL 459
Query: 531 EGVVSNASEYRDCVVYGV 548
E ++ D V G+
Sbjct: 460 ESILLQHPNIFDAGVAGL 477
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 134/368 (36%), Gaps = 27/368 (7%)
Query: 34 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 91
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 37 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 92 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 151
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 156
Query: 152 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 206
P +E P S +DK I + +SG+TGLPK +
Sbjct: 157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 211
Query: 207 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 262
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 212 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 269
Query: 263 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 320
+ + YK + + + + + N+ + G L ++
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 321 RFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIR 377
RF + I + YG TE + I D++PGA+G +++P + ++ +D + +
Sbjct: 330 RFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG---KVVP-FFEAKVVDLDTGKTLGVN 385
Query: 378 NKKGLCTR 385
+ LC R
Sbjct: 386 QRGELCVR 393
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 139/349 (39%), Gaps = 29/349 (8%)
Query: 23 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
A +FR + R+ K ++ + T ++E + R A+ G+ + + L++ +
Sbjct: 27 AYLFRLNETRA-GKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 83 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-GAELTDAVQEISTSLGSN 141
+LG GV+ + N L ++ + + A I GA + + Q + ++
Sbjct: 86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDG 145
Query: 142 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEV--PTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+L PL E+ +P + + G D ++Y+SG+TG
Sbjct: 146 CQLIVSQPRESEPRLA--------PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGK 197
Query: 200 PKAAVISNHRYYFLGGAIAYQI-GFRTKDRFYTPLPLYHTAGGAMCIGQALIF-----GC 253
PK V ++ Y+ A I G D ++ L+ G +G L F
Sbjct: 198 PKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYG----LGNGLTFPLSVGAT 253
Query: 254 CVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP--EDKAHNVRLMFGNGLR 311
+++ ++ +A F+ + +++ TV + + +L +P P D A + G L
Sbjct: 254 AILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALP 313
Query: 312 PQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAI--GFVSRLIP 358
+I F F +I + G+TE + N+ GA+ G R +P
Sbjct: 314 REIGERFTAHFG-CEILDGIGSTEMLHIF--LSNRAGAVEYGTTGRPVP 359
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 488 EIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYG 547
E G F +GD+ +D+ G+L+F+DR + ++KG ++ E+E ++ D V G
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIG 471
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 19/242 (7%)
Query: 55 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 114
+ ++A+ +G++KG+ V + + N ++V L ++ IN + L H +N
Sbjct: 62 TKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILN 121
Query: 115 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTS 174
+ + + + L + + + G ++F LSEV S
Sbjct: 122 DSEATTLVVHSXLYENFKPVLEKTGVE-RVFVVGGEVNS--------------LSEVXDS 166
Query: 175 PPSLSYRVGV---QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYT 231
V V +D + YT GTTG PK +++ +A G D
Sbjct: 167 GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVG 226
Query: 232 PLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST 291
P +H+A + + + G V+ F+ ++ KYK T + L++T
Sbjct: 227 CXPXFHSAEFGL-VNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 292 PE 293
E
Sbjct: 286 LE 287
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 32/240 (13%)
Query: 193 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 248
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 249 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL-LSTPEKPEDKAHNVRLMFG 307
LI G VV+ KF + + YKCT + + L S D ++ V + G
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317
Query: 308 NG-LRPQIWSEFVDRFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPTIYPI 363
L ++ RF + + + YG TE + I D++PGA G +++P ++
Sbjct: 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASG---KVVP-LFKA 373
Query: 364 SIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD 423
+I +D S + +C + G + K GYVN ++ K+++ +
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVK------GPMLMK-----------GYVNNPEATKELIDE 416
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GYVN ++ K+++ + + +GD+ D+ + + DR ++KG V E+
Sbjct: 402 GYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ D V GV
Sbjct: 457 ESVLLQHPSIFDAGVAGV 474
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 472 YVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVE 531
Y NE+ + + D F F +GD+ V D+ GY+ KDR D + GE +S+ ++E
Sbjct: 398 YGNEEATRSALTPDGF------FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLE 451
Query: 532 GVVSNASEYRDCVVYGV 548
+ + ++ V +
Sbjct: 452 NALMGHPKVKEAAVVAI 468
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 17/202 (8%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T +V + R+ A G+ GD VA + N + + + +G + N L
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXP 166
+ + +N A ++ L V+ I L V+ F
Sbjct: 109 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAPEGY---------- 157
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---YYFLGGAIAYQIGF 223
L E + RV + YT+GTTGLPK V S HR + L ++
Sbjct: 158 LAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYS-HRALVLHSLAASLVDGTAL 216
Query: 224 RTKDRFYTPLPLYHTAGGAMCI 245
KD +P++H A C+
Sbjct: 217 SEKDVVLPVVPMFHV--NAWCL 236
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 32/240 (13%)
Query: 193 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 248
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 249 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL-LSTPEKPEDKAHNVRLMFG 307
LI G VV+ KF + + YKCT + + L S D ++ V + G
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317
Query: 308 NG-LRPQIWSEFVDRFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPTIYPI 363
L ++ RF + + + YG TE + I D++PGA G +++P ++
Sbjct: 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASG---KVVP-LFKA 373
Query: 364 SIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD 423
+I +D S + +C + G + K GYVN ++ K+++ +
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVK------GPMLMK-----------GYVNNPEATKELIDE 416
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GYVN ++ K+++ + + +GD+ D+ + + DR ++KG V E+
Sbjct: 402 GYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ D V GV
Sbjct: 457 ESVLLQHPSIFDAGVAGV 474
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 40/244 (16%)
Query: 193 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 248
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 249 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVR 303
LI G VV+ KF + + YKCT I + L + K E D ++ V
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCT--NVI--LVPTLFAILNKSELLNKYDLSNLVE 313
Query: 304 LMFGNG-LRPQIWSEFVDRFRIAQIGEFYGATEGNANI---ANIDNQPGAIGFVSRLIPT 359
+ G L ++ RF + + + YG TE + I D++PGA G +++P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASG---KVVP- 369
Query: 360 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKK 419
++ +I +D S + +C + G + K GYVN ++ K+
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVK------GPMLMK-----------GYVNNPEATKE 412
Query: 420 IVTD 423
++ +
Sbjct: 413 LIDE 416
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GYVN ++ K+++ + + +GD+ D+ + + DR ++KG V E+
Sbjct: 402 GYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ D V GV
Sbjct: 457 ESVLLQHPSIFDAGVAGV 474
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 23/206 (11%)
Query: 26 FREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVC 85
F+E +P+ + + ++++ +NR+A G KG VAL + E V
Sbjct: 470 FKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVI 529
Query: 86 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 145
LG+ K G ++ L ++ + + + + + + E+ + E+ + LF
Sbjct: 530 GILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY---TGTTLF 586
Query: 146 XXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 205
E S P+ + + D +YTSGTTG PK +
Sbjct: 587 IDDQTRF-----------------EEQASDPATA--IDPNDPAYIMYTSGTTGKPKGNIT 627
Query: 206 SNHRYYFLGGAIAYQIGFRTKDRFYT 231
++ L + Y + F +D F +
Sbjct: 628 THANIQGLVKHVDY-MAFSDQDTFLS 652
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 471 GYVNEKDSAK-KIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
GYVN D K K + + F+ G++ + +GDL G + + R D + +G + E
Sbjct: 816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE 875
Query: 530 VEGVVSNASEYRDCVV 545
+E + +D VV
Sbjct: 876 IEKQLQEYPGVKDAVV 891
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 144/368 (39%), Gaps = 68/368 (18%)
Query: 12 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 67
ARR +K DL + DI HA + + + + + + +++ ++ +A QG+
Sbjct: 15 ARRYREKGYWQDLPLTDILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGI 72
Query: 68 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHNL------------------RQN 107
K G++ + L N E + L KLGV + AL +H RQ+
Sbjct: 73 KPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQH 132
Query: 108 SLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPL 167
+L + ++ F+ VQ ++ S N++ P
Sbjct: 133 ALFSGDDF--LNTFVTEHSSIRVVQLLNDSGEHNLQ-----------------DAINHP- 172
Query: 168 LSEVPTSPPSLSYRVGVQDKLIYIYTS-GTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 226
+E T+ PS + D++ Y S GTTG PK +++ YY+ F +
Sbjct: 173 -AEDFTATPSPA------DEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQ 225
Query: 227 DRFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIG 282
R+ +P H ++ G++ + + G VV+ SA+ F + K++ V +
Sbjct: 226 TRYLCAIPAAHNYAMSSPGSLGV---FLAGGTVVLAADPSATLCFPLIEKHQVNVTALVP 282
Query: 283 EMCRYLLSTPEKPEDKAH--NVRLMFGNGLRPQIWSEFVDRFRIA---QIGEFYGATEGN 337
L + E +A +++L+ G R + + R Q+ + +G EG
Sbjct: 283 PAVSLWLQALIEGESRAQLASLKLLQVGGAR--LSATLAARIPAEIGCQLQQVFGMAEGL 340
Query: 338 ANIANIDN 345
N +D+
Sbjct: 341 VNYTRLDD 348
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVV 534
+ SGDL+ +D GY+ + R D GE ++ E+E ++
Sbjct: 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLL 453
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GYVN ++ ++ D SGD+ DK GY + DR ++KG V E+
Sbjct: 435 GYVNNPEATSALIDK-----DGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAEL 489
Query: 531 EGVVSNASEYRDCVVYGV 548
E ++ D V G+
Sbjct: 490 ESILLQHPFIFDAGVAGI 507
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 26/208 (12%)
Query: 193 TSGTTGLPKAAVISNH---------RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 243
+SG+TGLPK +++ R G I T F+ ++ T G
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLT 291
Query: 244 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 303
C G +V+ +F + + YK + + + + + N+
Sbjct: 292 C-------GFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLH 344
Query: 304 LMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGNANIA----NIDNQPGAIGFVSRLI 357
+ G L ++ RF++ I + YG TE + I D++PGA G +++
Sbjct: 345 EIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACG---KVV 401
Query: 358 PTIYPISIIRVDPVTSEPIRNKKGLCTR 385
P + I+ +D + + + LC +
Sbjct: 402 P-FFSAKIVDLDTGKTLGVNQRGELCVK 428
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 170 EVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR 228
+P +P S++ D++ YI ++SGTTG PKA ++ L ++ + F + R
Sbjct: 148 HLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSF-LAFAPQMR 206
Query: 229 FYTPLPLYHTAGGAMCIGQALIFGCCVV 256
F PL A G L GCCV+
Sbjct: 207 FLVNSPLSFDAATLEIWGALLNGGCCVL 234
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 30/201 (14%)
Query: 49 QQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV-----CLWLGLSK--LGVITALIN 101
Q ++A + A L+ LKKGD VAL+ E EFV C + GL L + +
Sbjct: 52 QTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQ 111
Query: 102 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXX 161
+ L + +A I G E V + + N +L
Sbjct: 112 RDSWSAKLQGLLASCQPAAIITGDEWLPLV---NAATHDNPELHVLSHA----------- 157
Query: 162 XXXXPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQ 220
+P + ++ + V + + Y+ YTSG+T P+ +I++ AI++
Sbjct: 158 -----WFKALPEA--DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHD 210
Query: 221 -IGFRTKDRFYTPLPLYHTAG 240
I R DR + LP YH G
Sbjct: 211 GIKLRPGDRCVSWLPFYHDXG 231
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 13/165 (7%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 116
R AN L G+KKGD VA+ + PE L +++G + ++I ++ CI +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS 178
Query: 117 GVSAFIYGAELTDAVQEI-----------STSLGSNVKLFXXXXXXXXXXXXXXXXXXXX 165
I E A + I + ++ S +
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 238
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 210
L+ + SP + +D L +YTSG+TG PK + + Y
Sbjct: 239 DLIEKA--SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGY 281
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 117/325 (36%), Gaps = 40/325 (12%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
A +P++ F++ + + T +Q++ S+ +A++ ++ + + +PE + +LG
Sbjct: 11 AAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLG 70
Query: 90 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXX 149
K G ++ ++ D VQ I+ + G+ + L
Sbjct: 71 CVKAGHAYIPVDLSIP----------------------ADRVQRIAENSGAKLLLSATAV 108
Query: 150 XXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-NH 208
+ + P+ + V + IYTSG+TG PK I+ N
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 209 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV-------VIR-KK 260
F A+ +T F P M I +L+ G + + R K
Sbjct: 169 LVSFTKWAVE-DFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKD 226
Query: 261 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMFGNGLRPQIWSEF 318
AS SD+ + T EMC S E P K L G L ++ +
Sbjct: 227 LFASLEQSDIQVWTSTPS--FAEMCLMEASFSESMLPNMKTF---LFCGEVLPNEVARKL 281
Query: 319 VDRFRIAQIGEFYGATEGNANIANI 343
++RF A I YG TE + I
Sbjct: 282 IERFPKATIMNTYGPTEATVAVTGI 306
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 117/325 (36%), Gaps = 40/325 (12%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
A +P++ F++ + + T +Q++ S+ +A++ ++ + + +PE + +LG
Sbjct: 11 AAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLG 70
Query: 90 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXX 149
K G ++ ++ D VQ I+ + G+ + L
Sbjct: 71 CVKAGHAYIPVDLSIP----------------------ADRVQRIAENSGAKLLLSATAV 108
Query: 150 XXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-NH 208
+ + P+ + V + IYTSG+TG PK I+ N
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 209 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV-------VIR-KK 260
F A+ +T F P M I +L+ G + + R K
Sbjct: 169 LVSFTKWAVE-DFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKD 226
Query: 261 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMFGNGLRPQIWSEF 318
AS SD+ + T EMC S E P K L G L ++ +
Sbjct: 227 LFASLEQSDIQVWTSTPS--FAEMCLMEASFSESMLPNMKTF---LFCGEVLPNEVARKL 281
Query: 319 VDRFRIAQIGEFYGATEGNANIANI 343
++RF A I YG TE + I
Sbjct: 282 IERFPKATIMNTYGPTEATVAVTGI 306
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 35/165 (21%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA---MC--- 244
+YTSG+TG PK +S H A IG P GG +C
Sbjct: 181 LYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIG--------NVAPKSLELGGVGKFLCLAS 232
Query: 245 ------IGQALI---FGCCVVIRKKFSASNYFSDVCKYKCTVG-QYIGEMCRYLLSTPEK 294
IG+ + FG C V ++ S D+ + +G + G + L T
Sbjct: 233 RAFDVHIGEXFLAWRFGLCAVTGERLSX---LDDLPRTFRELGVTHAGIVPSLLDQTGLV 289
Query: 295 PEDKAHNVRL-MFGNGLRP---QIWSEFVDRFRIAQIGEFYGATE 335
PED H V L + G P QIWS DR + + YG TE
Sbjct: 290 PEDAPHLVYLGVGGEKXTPRTQQIWSS-SDRVALVNV---YGPTE 330
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 272 KYKCTVG-----QYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQ 326
KYK VG + G +++L E +KA L+FGN +W+
Sbjct: 121 KYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWN---------- 170
Query: 327 IGEFYGATEGNANIANIDN 345
G TEG ++ ++ N
Sbjct: 171 ---MTGGTEGGVHVTDVTN 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,972,666
Number of Sequences: 62578
Number of extensions: 661266
Number of successful extensions: 1698
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 139
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)