RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9226
(548 letters)
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 575 bits (1483), Expect = 0.0
Identities = 241/506 (47%), Positives = 295/506 (58%), Gaps = 101/506 (19%)
Query: 43 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 102
+ WT +++ YSN+VANFF AQG + GD VAL +ENR EFV LWLGL+K+GV TALIN
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 103 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 162
NLR SLLHCI ++ A I+
Sbjct: 61 NLRLESLLHCITVSKAKALIF--------------------------------------N 82
Query: 163 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG 222
L PLL++ T PPS V +DKL YIYTSGTTGLPKAAVI + RYY + Y G
Sbjct: 83 LLDPLLTQSSTEPPSQD-DVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFG 141
Query: 223 FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIG 282
R +D Y LPLYH+AGG M +GQAL+ G VVIRKKFSASN++ D KY CT+ QYIG
Sbjct: 142 MRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIG 201
Query: 283 EMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN 342
E+CRYLL+ P E++ HNVRL GNGLRPQIW +FV RF I QIGEFYGATEGN+++ N
Sbjct: 202 EICRYLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVN 261
Query: 343 IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSN 402
IDN GA GF SR++P++YPI +I+VD T E IR+ GLC C+PGEPG+ +GKI+ ++
Sbjct: 262 IDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPGEPGLLVGKIIQND 321
Query: 403 PARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTTYNKKGLCSRCEPGVFIGKIVP 462
P R + GYVNE + KKI DVF+ GDSAFLS G ++
Sbjct: 322 PLRRFDGYVNEGATNKKIARDVFKKGDSAFLS-----------------------GDVL- 357
Query: 463 SNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKG 522
LGY+ KD +GD TFRWKG
Sbjct: 358 ---VMDELGYLYFKDR-----------------TGD------------------TFRWKG 379
Query: 523 ENVSTCEVEGVVSNASEYRDCVVYGV 548
ENVST EVEG++SN D VVYGV
Sbjct: 380 ENVSTTEVEGILSNVLGLEDVVVYGV 405
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 488 bits (1258), Expect = e-167
Identities = 172/433 (39%), Positives = 241/433 (55%), Gaps = 9/433 (2%)
Query: 1 ALQRYLRFL-WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVA 59
L LR L A ++ D+F E A R P++ +FE+ + ++ A +NR A
Sbjct: 17 DLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYA 76
Query: 60 NFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS 119
++ A+G+ KGD VAL++ENRPE++ WLGL+KLG + AL+N R L H +N+
Sbjct: 77 HWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAK 136
Query: 120 AFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 179
I G EL +A +E L W D+ P + L+ + PT+ P+
Sbjct: 137 HLIVGEELVEAFEEARADL--ARPPRLWVAGGDTLDDP-EGYEDLAAAAAGAPTTNPASR 193
Query: 180 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA 239
V +D YIYTSGTTGLPKAAV+S+ R+ G + D Y LPLYH
Sbjct: 194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNT 253
Query: 240 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 299
GG + L G + +R+KFSAS ++ DV +Y+ T QYIGE+CRYLL+ P KP D+
Sbjct: 254 GGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRD 313
Query: 300 HNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPT 359
H +RLM GNGLRP IW EF RF I +I EFY A+EGN N+ N G +G V +
Sbjct: 314 HRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFDGTVGRVPLWLAH 373
Query: 360 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKK 419
P +I++ D T EP+R+ G C + +PGE G+ IG+I P + GY + + S KK
Sbjct: 374 --PYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGP---FDGYTDPEASEKK 428
Query: 420 IVTDVFEIGDSAF 432
I+ DVF+ GD+ F
Sbjct: 429 ILRDVFKKGDAWF 441
Score = 135 bits (341), Expect = 1e-33
Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 443 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDL 499
+ G C + E G+ IG+I P + GY + + S KKI+ DVF+ GD+ F +GDL
Sbjct: 390 DADGRCIKVKPGEVGLLIGRITDRGP---FDGYTDPEASEKKILRDVFKKGDAWFNTGDL 446
Query: 500 LVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ D +G+ F DR GDTFRWKGENV+T EVE +S + VVYGV
Sbjct: 447 MRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGV 495
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 370 bits (953), Expect = e-122
Identities = 161/392 (41%), Positives = 218/392 (55%), Gaps = 16/392 (4%)
Query: 47 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
T +V+ SN+VA LA GLK GD+VAL+L N P F+ +WLGL+KLG TA +N N+R
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIR 64
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVPRSQAL 164
SLLHC G + EL +AV+EI +L + V++F S SP +L
Sbjct: 65 SGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHT-----SPPEGVISL 119
Query: 165 SPLLSEVPTSPPSLSYRVGV--QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI- 221
+ P S R GV + +YIYTSGTTGLPKAA IS+ R L + +
Sbjct: 120 LAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLR--VLQCSGMLSLC 177
Query: 222 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYI 281
G D YT LPLYH++G + I + G +V++ KFSAS ++ D KY TV QYI
Sbjct: 178 GVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYI 237
Query: 282 GEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIA 341
GE+ RYL + P+ D+ H VRL GNGLRP +W EF+ RF + E Y +TEGN
Sbjct: 238 GELLRYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEGNIGFI 297
Query: 342 NIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPS 401
N + GA+G S L + P +I+ D EP+R+ +G C GEPG+ I KI
Sbjct: 298 NYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQ 357
Query: 402 NPARAYLGYV-NEKDSAKKIVTDVFEIGDSAF 432
+P +LGY + + KK++ DVF+ GD F
Sbjct: 358 SP---FLGYAGPRELTEKKLLRDVFKKGDVYF 386
Score = 119 bits (300), Expect = 1e-28
Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 7/110 (6%)
Query: 443 NKKGLC---SRCEPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAFLSGD 498
+ +G C + EPG+ I KI +P +LGY + + KK++ DVF+ GD F +GD
Sbjct: 334 DAQGFCIPVGKGEPGLLISKITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYFNTGD 390
Query: 499 LLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
LLV D+ +LYF DRTGDTFRWKGENV+T EV +++ ++ VYGV
Sbjct: 391 LLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGV 440
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 314 bits (808), Expect = e-102
Identities = 108/254 (42%), Positives = 155/254 (61%), Gaps = 8/254 (3%)
Query: 181 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 240
R + D YIYTSGTTGLPKAA++S+ R+ G + D Y LPLYH+
Sbjct: 77 RAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNA 136
Query: 241 GAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH 300
+ AL G + +R+KFSAS ++ DV +Y T QY+GE+CRYLL+ PEKP+D+ H
Sbjct: 137 LTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDH 196
Query: 301 NVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTI 360
+R + GNGLRP IW EF +RF + +I EFYG+TEGN N+ N+PGA+G +
Sbjct: 197 PLRKIIGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGAVGRLPP----- 251
Query: 361 YPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKI 420
I++++ D T EPIR+ G C + PGE G+ +G+I + GY +++ + KKI
Sbjct: 252 AAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEI---TDRNPFDGYTDDEATEKKI 308
Query: 421 VTDVFEIGDSAFLS 434
+ DVF+ GD+ F +
Sbjct: 309 LRDVFKKGDAYFNT 322
Score = 128 bits (324), Expect = 3e-32
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 6/110 (5%)
Query: 442 YNKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGD 498
+ G C + E G+ +G+I + GY +++ + KKI+ DVF+ GD+ F +GD
Sbjct: 268 RDANGFCIKVPPGEVGLLLGEI---TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 499 LLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
L+ D +GY YF DR GDTFRWKGENVST EVE V++ + VYGV
Sbjct: 325 LVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGV 374
Score = 108 bits (273), Expect = 2e-25
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 45 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
+ + A++NR A+ A G+KKGD VAL++ENRPE++ WL L+KLG + ALIN
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
R L HCIN++ A I D I TS
Sbjct: 63 RGEVLAHCINVSDARAVI-----VDPAFYIYTS 90
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 288 bits (740), Expect = 7e-92
Identities = 134/402 (33%), Positives = 188/402 (46%), Gaps = 68/402 (16%)
Query: 41 FENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 99
FE WT + R A++ + ++ GD VA+ N EFV LWL L +G + A
Sbjct: 1 FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60
Query: 100 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 159
IN+NL + L+HC+ I S K PD
Sbjct: 61 INYNLSGDPLIHCLKI------------------------SGAKFVIVDPD--------- 87
Query: 160 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 219
D IYTSGTTGLPK IS R +++
Sbjct: 88 --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121
Query: 220 QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQ 279
+ + DR YT +PLYH + + L G + + +KFSAS ++ DV + T+ Q
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQ 181
Query: 280 YIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNAN 339
Y+GE+CRYLL+TP P D+ H VR+ +GNGLRP IW F +RF + +IGEFY ATEG
Sbjct: 182 YVGELCRYLLATPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFA 241
Query: 340 IANIDNQP---GAIGFVSRLIPTIYP--ISIIRVDPVTSEPIR-NKKGLCTRCEPGEPGV 393
N + P GAIGF + + ++++DP T PIR K G C R GEPG
Sbjct: 242 FTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGE 301
Query: 394 FIGKIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAFLS 434
+G++ N + GY+ NE + K++ DVF GD + +
Sbjct: 302 MLGRVRFKNRE-LFQGYLKNEDATESKLLRDVFRKGDIWYRT 342
Score = 114 bits (288), Expect = 2e-27
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 443 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAFLSGD 498
K G C R EPG +G++ N + GY+ NE + K++ DVF GD + +GD
Sbjct: 286 PKTGFCVRAPVGEPGEMLGRVRFKNRE-LFQGYLKNEDATESKLLRDVFRKGDIWYRTGD 344
Query: 499 LLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
LL D G YF DR GDTFRWK ENVST EV V+ + VYGV
Sbjct: 345 LLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 207 bits (529), Expect = 2e-61
Identities = 102/397 (25%), Positives = 161/397 (40%), Gaps = 34/397 (8%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T ++++ +NR+A A G+ GD VA++L N PE+V L + K G ++ +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
L + + + I EL + E+ L + L
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLAL------IIVGDDGEGLDLLDDE 114
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 226
LL+ PP+ V D IYTSGTTG PK ++++ L +A + G
Sbjct: 115 LLAGASAEPPAPP--VDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPG 172
Query: 227 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS--ASNYFSDVCKYKCTVGQYIGEM 284
DR LP H G I L+ G +V+ KF+ + + KYK TV + +
Sbjct: 173 DRVLLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231
Query: 285 CRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN 342
R LL PE+ + ++RL+ G L P++ +RF + YG TE
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATA 291
Query: 343 IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPG-VFIGKIVPS 401
N PG P + P SI R P + +++G PGE G + I
Sbjct: 292 --NLPGD--------PEVKPGSIGRPLPGVEVKVLDEEG--EPVPPGEVGELCIRGP--- 336
Query: 402 NPARAYLGYVNEKDSAKKIVTDVFEI---GDSAFLSD 435
AR YL + + +A++ V D + + GD +
Sbjct: 337 GVARGYLN--DPELTAERFVEDGWGMYRTGDLGRWDE 371
Score = 64.3 bits (157), Expect = 5e-11
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 451 CEPGVFIGKIVPSNP--ARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYL 508
PG +G++ P AR YL + + +A++ V D + + +GDL D+ GYL
Sbjct: 323 VPPGE-VGELCIRGPGVARGYLN--DPELTAERFVEDGW----GMYRTGDLGRWDEDGYL 375
Query: 509 YFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVV 545
R D + +GE + E+E V+ + V
Sbjct: 376 EILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 209 bits (533), Expect = 8e-61
Identities = 108/427 (25%), Positives = 174/427 (40%), Gaps = 37/427 (8%)
Query: 19 DLTIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
+LT+A + A R+P++ +F T ++++ +NR+A A G+K GD VA++
Sbjct: 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 136
L N PEF+ +L + G + +N L L + +N AG I AE ++ ++
Sbjct: 70 LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE 129
Query: 137 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
+L + + + L L +E P V D +YTSGT
Sbjct: 130 ALPVVLVV------LLVGDADDRLPITLEALAAEGPGPDADAR-PVDPDDLAFLLYTSGT 182
Query: 197 TGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 254
TGLPK V++ N G A A G D + LPL+H G + + L+ G
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242
Query: 255 VVI--RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH-NVRLMFGNG-- 309
+V+ + F + KYK TV + R LL PEK +D ++RL+ G
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302
Query: 310 LRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVD 369
L P++ F +RF I E YG TE + + S P + + + VD
Sbjct: 303 LPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRP-LPGVEVRIVD 361
Query: 370 PVTSEPIRNKKG-LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDV--FE 426
P E + + G + R P V GY N ++ + +
Sbjct: 362 PDGGEVLPGEVGEIWVR----GPNVM-------------KGYWNRPEATAEAFDEDGWLR 404
Query: 427 IGDSAFL 433
GD ++
Sbjct: 405 TGDLGYV 411
Score = 65.2 bits (159), Expect = 4e-11
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 470 LGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GY N + +A+ D + +GDL +D+ GYLY R D GEN+
Sbjct: 384 KGYWNRPEATAEAFDEDGW------LRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPE 437
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E V++ + V GV
Sbjct: 438 EIEAVLAEHPAVAEAAVVGV 457
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 205 bits (523), Expect = 2e-60
Identities = 89/318 (27%), Positives = 133/318 (41%), Gaps = 68/318 (21%)
Query: 45 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
+T ++ NR+A LA G++ GD VALML+N PEF+ W L+KLG + IN L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 164
R L H ++ +G + D + TS G+
Sbjct: 63 RGEELAHILDHSGARLIV-----VDTAAILYTS-GT------------------------ 92
Query: 165 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 224
T PP K ++++ + F A +G R
Sbjct: 93 --------TGPP------------------------KGVLLTHAQLLFAARLAARLLGLR 120
Query: 225 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEM 284
D TPLPL+H A + AL+ G +V+ +FSAS ++ V K+ TV +G M
Sbjct: 121 PDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAM 180
Query: 285 CRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANID 344
L+ P P+D+ H +R +FG L IW F +RF + ++ E YG TE I
Sbjct: 181 AAILMKQPPSPDDRDHPLRFVFGAPLPAAIWPAFEERFGV-KLVEGYGMTETGVPIIAPG 239
Query: 345 NQ--PGAIGFVSRLIPTI 360
+ PG+ G R P +
Sbjct: 240 DPAPPGSCG---RPRPGV 254
Score = 59.5 bits (145), Expect = 2e-09
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD D+ G+LYF DR D R +GEN+S+ EVE + + V V
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAV 358
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 205 bits (524), Expect = 2e-59
Identities = 107/347 (30%), Positives = 166/347 (47%), Gaps = 10/347 (2%)
Query: 11 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 70
A + + T+ + A R P++ + +F T WT + + A+ A G+K+G
Sbjct: 12 AVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRG 71
Query: 71 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 130
D VALM NR EF+ ++LG + LG I IN LR L H + +G + A L A
Sbjct: 72 DRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAA 131
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 190
++ + W D +S S VP + +PL P P+ + V D
Sbjct: 132 LEAADPGDLPLPAV--WLLDAPASVS-VPAGWSTAPL---PPLDAPAPAAAVQPGDTAAI 185
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
+YTSGTTG K + ++Y+ G A + D YT LPL+HT QAL+
Sbjct: 186 LYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF-QALL 244
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 310
G V+ +FSAS ++ V ++ TV +G M LLS P + D+AH VR+ G G+
Sbjct: 245 AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGV 304
Query: 311 RPQIWSEFVDRFRIAQIGEFYGATEGNANIANI--DNQPGAIGFVSR 355
+ + F +RF + + + YG+TE N IA +PG++G ++
Sbjct: 305 PAALHAAFRERFGVDLL-DGYGSTETNFVIAVTHGSQRPGSMGRLAP 350
Score = 50.1 bits (120), Expect = 2e-06
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD +V D G+ F DR D R +GEN+S+ EVE V+ + V+ V
Sbjct: 402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPV 456
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 153 bits (389), Expect = 1e-40
Identities = 136/544 (25%), Positives = 216/544 (39%), Gaps = 113/544 (20%)
Query: 21 TIADIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 75
+ ++ + A +K +FE+ ++ ++ NR AN F + G++KGD VAL
Sbjct: 8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL 67
Query: 76 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE---LTDAVQ 132
L+N PEF+ W GL+K+G I IN L + + + S + A+ + +Q
Sbjct: 68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQ 127
Query: 133 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP--LLSEVPTSPPSLSYRVGVQDKLIY 190
+ + ++ L + D S + +A P L P S D
Sbjct: 128 QEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLS---------TDDTAEI 178
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH-----TAGGAMCI 245
++TSGTT PK VI+++ F G A+Q R D + T +P +H TA AM
Sbjct: 179 LFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA--AM-- 234
Query: 246 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR-L 304
A G V+ +K+SA ++ VCKY+ T+ + I M R L+ P D+ H +R +
Sbjct: 235 -AAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREV 293
Query: 305 MFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPIS 364
MF L Q F +RF + ++ YG TE I I ++PG R P+I
Sbjct: 294 MFYLNLSDQEKDAFEERFGV-RLLTSYGMTETIVGI--IGDRPGD----KRRWPSI---- 342
Query: 365 IIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDV 424
G PG Y E
Sbjct: 343 ------------------------GRPG---------------FCYEAEIRDDHNRPLPA 363
Query: 425 FEIGDSAFLSDPPKNTTYNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVT 484
EIG+ +C + PG I K Y + + K++
Sbjct: 364 GEIGE-----------------ICIKGVPGKTIFK-----------EYYLDPKATAKVLE 395
Query: 485 DVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCV 544
D +GD +D+ G+ YF DR + + GENVS E+E +++ + +D V
Sbjct: 396 -----ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIV 450
Query: 545 VYGV 548
V G+
Sbjct: 451 VVGI 454
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 138 bits (350), Expect = 3e-35
Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 10/319 (3%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
LTI I R A + P+K F+ T +++ NR+AN A G+KKGD VA+ N
Sbjct: 6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWN 65
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 139
E++ + + K+G + IN L+ + + +N A + +E + I L
Sbjct: 66 SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP 125
Query: 140 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+ V+ D ++ P LL+ + + D +YTSGTTG
Sbjct: 126 T-VRTVIVEGDGPAAPLA-PEVGEYEELLAAASDTFDFP--DIDENDAAAMLYTSGTTGH 181
Query: 200 PKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
PK V+S HR FL A+ + D + +P++H + AL+ G VI
Sbjct: 182 PKGVVLS-HRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY-LALMAGAKQVIP 239
Query: 259 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWS 316
++F N + + T + + + LL P ++RL+ G L P +
Sbjct: 240 RRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLR 299
Query: 317 EFVDRFRIAQIGEFYGATE 335
EF ++F I + + YG TE
Sbjct: 300 EFKEKFGI-DLVQGYGMTE 317
Score = 49.8 bits (120), Expect = 3e-06
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 457 IGKIVPSNPARAYLGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTG 515
+G+I+ P GY N + +A+ I +GD+ +D+ GYLY DR
Sbjct: 367 VGEIIVRGPWLM-QGYWNRPEATAETID-------GGWLHTGDVGYIDEDGYLYITDRIK 418
Query: 516 DTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D GEN+ E+E + + V GV
Sbjct: 419 DVIISGGENIYPRELEDALYGHPAVAEVAVIGV 451
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 138 bits (349), Expect = 4e-35
Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 42/368 (11%)
Query: 73 VALMLENRPEFVCLWLGLSKL-GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAV 131
V ++L+N PEF L LG + L G++ +N R +L I A + + + +
Sbjct: 57 VGVLLDNTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115
Query: 132 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI 191
L V++ + DS A + L+ + P D + I
Sbjct: 116 D----GLDPGVRVI----NVDS--------PAWADELAAHRDAEPPFR-VADPDDLFMLI 158
Query: 192 YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 251
+TSGT+G PKA ++ + G +A + G D Y +PL+H+ AL
Sbjct: 159 FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAA 218
Query: 252 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR 311
G + +R+KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+++GN
Sbjct: 219 GASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGA 278
Query: 312 PQIWSEFVDRFRIAQIGEFYGATEGNANIANI-DNQPGAIGFVSRLIPTIYPISIIRVDP 370
P + F RF + + +G+TEG I D PGA+G L P ++I VDP
Sbjct: 279 PGDIARFARRFGCVVV-DGFGSTEGGVAITRTPDTPPGALG---PLPP---GVAI--VDP 329
Query: 371 VTSEPIRNKKGLCTRCEPGEPGVF-----IGKIVPSNPARAYLGYVNEKD-SAKKIVTDV 424
T C E + + IG++V + + GY N+ + A+++ V
Sbjct: 330 DTGTE-------CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGV 382
Query: 425 FEIGDSAF 432
+ GD A+
Sbjct: 383 YWSGDLAY 390
Score = 52.8 bits (127), Expect = 3e-07
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 449 SRCEPGVF-----------IGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSG 497
+ C P IG++V + + GY N+ ++ D + + SG
Sbjct: 333 TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEA------DAERMRGGVYWSG 386
Query: 498 DLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
DL D GY YF R GD R GEN+ T +E ++ + + VY V
Sbjct: 387 DLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAV 437
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 137 bits (348), Expect = 7e-35
Identities = 114/429 (26%), Positives = 183/429 (42%), Gaps = 58/429 (13%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS---VALML 77
TIA + R+ A + + + + WT ++V A + A L D V ++L
Sbjct: 4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAA--ALIALADPDRPLHVGVLL 59
Query: 78 ENRPEFVCLWLGLSKLGVITAL-INHNLRQNSLLHCINIAGVSAFIYGAE---LTDAVQE 133
N PE + WL + LG + +N R +L I A + AE L D +
Sbjct: 60 GNTPEML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDL 118
Query: 134 ISTSLGSNVKLFSWSPDTDSSSSPVPR-SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 192
V++ D D+ P ++ ++ + P V D + I+
Sbjct: 119 ------PGVRVL----DVDT-----PAYAELVAAAGALTPHRE------VDAMDPFMLIF 157
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
TSGTTG PKA S+ R F G A+ + G D Y +PL+H+ A+ G
Sbjct: 158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASG 217
Query: 253 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP 312
V + KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+ FGN P
Sbjct: 218 AAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASP 277
Query: 313 QIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQP-GAIGFVSRLIPTIYPISIIRVDPV 371
+ +EF RF Q+ + YG++EG + P G+IG R P + +P
Sbjct: 278 RDIAEFSRRFG-CQVEDGYGSSEGAVIVVREPGTPPGSIG---RGAP-----GVAIYNPE 328
Query: 372 TSEPIRNKKGLCTRCEPGEPGVF------IGKIVPSNPARAYLGYVNEKDS-AKKIVTDV 424
T C G IG++V + A + GY N ++ A+++ +
Sbjct: 329 TLTE-------CAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGM 381
Query: 425 FEIGDSAFL 433
+ GD A+
Sbjct: 382 YWSGDLAYR 390
Score = 48.9 bits (117), Expect = 4e-06
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 457 IGKIVPSNPARAYLGYVNEKDS-AKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTG 515
IG++V + A + GY N ++ A+++ + SGDL D G++YF RT
Sbjct: 351 IGELVNTAGAGFFEGYYNNPEATAERM-------RHGMYWSGDLAYRDADGWIYFAGRTA 403
Query: 516 DTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D R GEN+S +E ++ VY V
Sbjct: 404 DWMRVDGENLSAAPIERILLRHPAINRVAVYAV 436
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 129 bits (328), Expect = 1e-32
Identities = 91/343 (26%), Positives = 142/343 (41%), Gaps = 56/343 (16%)
Query: 22 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 81
+AD+ A R P++ F + T +++ S+R A + G+KKGD VALML N P
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP 60
Query: 82 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 141
+F + G+ K G + +N L H +N +G I DA+
Sbjct: 61 QFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASG------- 113
Query: 142 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 201
+PL V SP D + YT GTTG+PK
Sbjct: 114 -----------------------APLPLPVELSP---------DDLAVLQYTGGTTGVPK 141
Query: 202 AAVISNHRYYFLGGAIAYQI-----GFRT-KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 255
A+++ HR A QI R +DRF T LPL+H G + + L G
Sbjct: 142 GAMLT-HRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATN 197
Query: 256 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQ 313
V+ F N ++ +Y+ T+ + + LL+ PE + ++RL G L +
Sbjct: 198 VLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE 257
Query: 314 IWSEFVDRFRIAQIGEFYGATEGN----ANIANIDNQPGAIGF 352
+ F ++ A + E YG TE + N + + +PG+IG
Sbjct: 258 VAERFEEKTG-APLVEGYGLTETSPVTTVNPLDGERKPGSIGL 299
Score = 38.3 bits (90), Expect = 0.010
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY N + +++TD + +GD+ MD+ GY Y DR D G NV E+
Sbjct: 334 GYWNRPEETAEVLTDGW------LRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREI 387
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ + + V GV
Sbjct: 388 EEVLYSHPAVLEAAVVGV 405
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 121 bits (306), Expect = 2e-29
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Query: 11 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 70
ARR TI DI R A R P+K +F + WT +++A NRVA L GLKKG
Sbjct: 7 RARRQ-----TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKG 61
Query: 71 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 130
D VA + N + LWL ++ G + +N L L + ++ +G AF+ L
Sbjct: 62 DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPT 121
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 190
+ L V S +P + + P + D L
Sbjct: 122 AEAALALLP--VDTLILSLVLGGREAP-GGWLDFADWAEAGSVAEPDVELA---DDDLAQ 175
Query: 191 I-YTSGTTGLPKAAVISN----HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 240
I YTSGT LPK A++++ Y + +A D LPLYH A
Sbjct: 176 ILYTSGTESLPKGAMLTHRALIAEY--VSCIVA--GDMSADDIPLHALPLYHCAQ 226
Score = 44.5 bits (106), Expect = 1e-04
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 453 PGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKD 512
PG +G+IV +P + LGY ++ + + F F SGDL VMD+ GY+ D
Sbjct: 364 PGE-VGEIVHRSP-QLMLGYWDDPEKTA----EAFR--GGWFHSGDLGVMDEEGYITVVD 415
Query: 513 RTGDTFRWKGENVSTCEVEGVV 534
R D + GENV++ EVE +
Sbjct: 416 RKKDMIKTGGENVASREVEEAL 437
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 121 bits (306), Expect = 3e-29
Identities = 86/342 (25%), Positives = 140/342 (40%), Gaps = 25/342 (7%)
Query: 2 LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 61
LR RR A + A R+P++ + E T +++ SN +A
Sbjct: 35 PDNGLRLAADIRRYG----PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARG 90
Query: 62 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAF 121
LA G++ GD VA++ N FV K+G L+N L GV A
Sbjct: 91 LLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL 150
Query: 122 IYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 181
+Y E TD + + LG +L +W + D + L L++ T+P +
Sbjct: 151 VYDDEFTDLLSALPPDLG---RLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPK 207
Query: 182 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 241
G I I TSGTTG PK A + ++ FR + P P++H G
Sbjct: 208 PGG----IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGW 263
Query: 242 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK--A 299
A + A+ G VV+R++F D+ K+K T + M +L + K
Sbjct: 264 A-HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDT 322
Query: 300 HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE----FYGATE 335
+++++F G+ L P++ + ++ F G YG+TE
Sbjct: 323 SSLKIIFVSGSALSPELATRALEAF-----GPVLYNLYGSTE 359
Score = 32.6 bits (75), Expect = 0.66
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY + +D K+I+ + GD + D G L+ R D GENV EV
Sbjct: 415 GYTDGRD--KQIIDGLLSSGDVGYFDED-------GLLFVDGRDDDMIVSGGENVFPAEV 465
Query: 531 EGVVSNASEYRDCVVYGV 548
E +++ + + V GV
Sbjct: 466 EDLLAGHPDVVEAAVIGV 483
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 120 bits (304), Expect = 4e-29
Identities = 85/388 (21%), Positives = 136/388 (35%), Gaps = 51/388 (13%)
Query: 32 RSPNKVIFMFENTE-----WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 86
P+ +F+ + T + R+AN G KGD VA+ + N PE V
Sbjct: 22 DRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIA 81
Query: 87 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 146
L +++G I A+++ L ++ I G I +EI +
Sbjct: 82 LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEI------ALL--- 132
Query: 147 WSPDTDSSSSPVPRSQ-ALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAV 204
D D+ S V V + + + D L +YTSGTTG PK V
Sbjct: 133 --EDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIV 190
Query: 205 ISNHRYYFLGGAIAYQIGFRTK--DRFYTPLPLYHTAGGAMCIGQALIFGCCVVI---RK 259
S H Y + + + DRF+ G + L G V+ R
Sbjct: 191 HS-HGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRP 249
Query: 260 KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPE-KPEDKAHNVRLMFGNG--L 310
+S + + KYK T+ R L+ +P D + +R++ G L
Sbjct: 250 FYSPERLWEALEKYKVTI------FGTSPTFLRRLMKLGLGEPYDLSS-LRVLGSAGEPL 302
Query: 311 RPQIWSEFVDRFRIAQIGEFYGATE-GNANIANI-DNQPGAIGFVSRLIPTIYPISIIRV 368
P+ + F + I + YG TE G IA + G+ G P + ++ RV
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPPVKNGSSGL-----P-LPGYAVRRV 355
Query: 369 DPVTSEPIRNKKGLCTRCEPGEPGVFIG 396
D + L PG+ +
Sbjct: 356 DDEGNPVPPGVGELV--VRLPWPGMALT 381
Score = 41.5 bits (98), Expect = 0.001
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ +GD D+ GY + R+ D + G+ + E+E V+ + V GV
Sbjct: 398 YRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGV 452
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 116 bits (293), Expect = 8e-29
Identities = 62/265 (23%), Positives = 97/265 (36%), Gaps = 48/265 (18%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 245
D +YTSGTTG PK V+S+ A+A IG D + LPL+H GG +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 246 GQALIFGCCVVIRKKFS-ASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAH 300
AL+ G VV+ + F ++ + +Y+ T V L E
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY----DALAKAAEDRGYDLS 116
Query: 301 NVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN----IDNQPGAIGFVS 354
++RL+ G L P++ F +R I E YG TE + + +PG +G
Sbjct: 117 SLRLLISGGEPLSPELLERFEERPGA-PILEGYGLTETSVVTSTNPDSELKKPGTVGRPV 175
Query: 355 RLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIV--PSNPARAYLGYVN 412
+ ++ + PGE +G++V + Y
Sbjct: 176 PG----VEVRVVDEE-------------GKPLPPGE----VGELVVRGPWVMKGYWNNPP 214
Query: 413 EKDSAKK----IVTDVFEIGDSAFL 433
E +A T GD +L
Sbjct: 215 ETTAAATEDGWYRT-----GDLGYL 234
Score = 74.2 bits (183), Expect = 2e-14
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 448 CSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGY 507
PG +G++V P GY N T D + +GDL +D+ GY
Sbjct: 187 GKPLPPG-EVGELVVRGPWVM-KGYWNNPPE-----TTAAATEDGWYRTGDLGYLDEEGY 239
Query: 508 LYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
LY R+ D + GENV EVE V+ + V GV
Sbjct: 240 LYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGV 280
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 118 bits (297), Expect = 2e-28
Identities = 88/328 (26%), Positives = 135/328 (41%), Gaps = 20/328 (6%)
Query: 43 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 102
TE T + + R+A GLK+GD VAL+ N EF ++LG G I + N
Sbjct: 8 GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67
Query: 103 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 162
+ + L H + I+ + D V+E + LG V++ DS+ V R +
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIV----LDSAPDGVLRIE 123
Query: 163 AL--SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAI 217
L L +E P L G D +Y+SGTTGLPK ++S+
Sbjct: 124 DLLEPRLGAEDEFRPTPL--IDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDT 181
Query: 218 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
+ D T LP YH G + L G V+I KF + + + KYK T
Sbjct: 182 LKGNPDSSNDVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 278 GQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
+ + L +P + ++R++F L ++ E RF I + YG TE
Sbjct: 241 LFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTE 300
Query: 336 GN---ANIANIDNQPGAIGFVSRLIPTI 360
D +PG++G RL+P +
Sbjct: 301 TGPATTLTPPGDEKPGSVG---RLVPNV 325
Score = 38.4 bits (90), Expect = 0.008
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 470 LGYV-NEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GY+ N + + + I D + +GD+ D+ G Y DR + ++KG V
Sbjct: 355 KGYLNNPEATKETIDEDGW------LHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPA 408
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E V+ + D V G+
Sbjct: 409 ELEAVLLEHPKVADAAVIGI 428
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 118 bits (297), Expect = 7e-28
Identities = 100/412 (24%), Positives = 169/412 (41%), Gaps = 33/412 (8%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
I E A +P +F+ T + V N V +A G+++GD V +++E RP +
Sbjct: 452 IIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSAL 511
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLH-CINIAGVSAFIYGAELTDAVQEISTSLGSNVK 143
LS+LG + L + ++ L + + GV+ I +A ++ L V
Sbjct: 512 VAIAALSRLGAVAVL----MPPDTDLAAAVRLGGVTEIITDPTNLEAARQ----LPGRVL 563
Query: 144 LFSWSPDTD---SSSSPVPRSQALSPLLSEVPTSPPSLSYR--VGVQDKLIYIYTSGTTG 198
+ D + V + + P E+P YR G+ L +I S G
Sbjct: 564 VLGGGESRDLDLPDDADVIDMEKIDPDAVELPGW-----YRPNPGLARDLAFIAFSTAGG 618
Query: 199 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
A I+N+R+ A +D Y PL+H +G + +G A++ G + +
Sbjct: 619 ELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS 678
Query: 259 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEF 318
+ + +V +Y TV Y M R ++ P H VRL G+G+ +W
Sbjct: 679 RGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERV 738
Query: 319 VDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRN 378
V+ F A + EF+ T+G A +AN+ IG R +P + + DP + +
Sbjct: 739 VEAFAPAHVVEFFATTDGQAVLANVSG--AKIGSKGRPLPGAGRVELAAYDPEHDLILED 796
Query: 379 KKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDS 430
+G R E E GV + + AR G ++ S K+ VF D+
Sbjct: 797 DRGFVRRAEVNEVGVLLAR------AR---GPIDPTASVKR---GVFAPADT 836
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 111 bits (281), Expect = 3e-26
Identities = 74/336 (22%), Positives = 122/336 (36%), Gaps = 51/336 (15%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
D T+ D+ +A R P++ + T ++++A +R+A LA G+ GD V + L
Sbjct: 13 GDQTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQL 72
Query: 78 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
N EFV L+ L KLG I L R + + H + A+I
Sbjct: 73 PNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYI--------------- 117
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
D S ++ LL E+P D ++ + GTT
Sbjct: 118 ----------IADRFSGFDYAALAR---ELLEELP-------------DVALFQLSGGTT 151
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA----GGAMCIGQALIFGC 253
GLPK +++ Y + A A G + LP H G + AL+ G
Sbjct: 152 GLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLG---ALLAGG 208
Query: 254 CVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ 313
VV+ S F + + K T + + L E + ++R++ G
Sbjct: 209 TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLS 268
Query: 314 IWS--EFVDRFRIAQIGEFYGATEGNANIANIDNQP 347
+R + + +G EG N +D+ P
Sbjct: 269 PELARRVEERLGC-PLQQVFGMAEGLVNYTRLDDPP 303
Score = 31.8 bits (73), Expect = 0.94
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D + +GDL+ +D GY R D GE +S E+E ++ + D V G+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGM 420
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 107 bits (270), Expect = 8e-25
Identities = 106/440 (24%), Positives = 173/440 (39%), Gaps = 70/440 (15%)
Query: 24 DIFREHAVRSPNKV--IFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
D+ +A P+K+ I+ ++ E +T ++ YSN+ ANFF A G+ KGD+V L L+
Sbjct: 21 DVVDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLK 80
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEIST 136
R EF L L K+G I H L +++ I AG+ + E + + + E +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAP 140
Query: 137 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTS 194
GS L + P+ + D L+ +TS
Sbjct: 141 ECGSPTLLVLVGDP------VPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTS 194
Query: 195 GTTGLPKAAVISNHRYYFLGGAIA--YQIGFRTKDRFYTPLPLYHTAGGAMCI-----GQ 247
GTTG+PK V +H Y LG + Y + T G + GQ
Sbjct: 195 GTTGMPK-MVEHDHTYP-LGHIVTAKYWQNVKEGGLHLT----VADTGWGKAVWGKLYGQ 248
Query: 248 ALIFGCCVVI--RKKFSASNYFSDVCKYK----C---TVGQYI--GEMCRYLLSTPEKPE 296
I G V + KF N + KY C T+ +++ ++ +Y LS+
Sbjct: 249 -WIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDLSKYDLSSLRYC- 306
Query: 297 DKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDN---QPGAIGFV 353
G L P++++ F ++ I ++ E +G TE IA +PG++G
Sbjct: 307 -------TTAGEPLNPEVFNTFKEKTGI-KLMEGFGQTETTLTIATFPWMEPKPGSMGKP 358
Query: 354 SRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNE 413
S Y I II D CE GE G + + P ++GY +
Sbjct: 359 S----PGYDIDIIDPDG-------------KSCEVGEEGEIVIRTSDGKPLGLFMGYYRD 401
Query: 414 KDSAKKIVTD-VFEIGDSAF 432
+ ++ D + GD+A+
Sbjct: 402 PERTAEVWHDGYYHTGDTAW 421
Score = 37.0 bits (86), Expect = 0.028
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 448 CSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD-VFEIGDSAFLSGDLLVMDKWG 506
C E G + + P ++GY + + ++ D + GD+A+ MD+ G
Sbjct: 374 CEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAW-------MDEDG 426
Query: 507 YLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
YL+F R D + G + EVE + +C V GV
Sbjct: 427 YLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGV 468
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 105 bits (263), Expect = 4e-24
Identities = 109/522 (20%), Positives = 192/522 (36%), Gaps = 117/522 (22%)
Query: 34 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSK 92
P+++ + E E T +Q+ Y ++VA + + + +KKG+ +A++ +N E++ L ++K
Sbjct: 16 PDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75
Query: 93 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 152
+ I +N L +N L+ + +G + + +
Sbjct: 76 VECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--------------- 120
Query: 153 SSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 210
S V +L + + + S I YTSGTTG PK AV++
Sbjct: 121 SYVQRVISITSLKEIEDRKIDNFVEKNES------ASFIICYTSGTTGKPKGAVLTQENM 174
Query: 211 YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDV 270
++ + I DR LPL+H G + L G +++ +KF + S +
Sbjct: 175 FWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234
Query: 271 CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDR-FRIAQ 326
K+K TV + + + L++ + +VR F NG P ++ EF+DR F
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVR-WFYNGGAPCPEELMREFIDRGFL--- 290
Query: 327 IGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRC 386
G+ +G TE + PT++ +S E R K G
Sbjct: 291 FGQGFGMTETS--------------------PTVFMLS--------EEDARRKVG----- 317
Query: 387 EPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTTYNKKG 446
IGK V L D KN
Sbjct: 318 -------SIGKPVLFCDYE---------------------------LIDENKN------- 336
Query: 447 LCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWG 506
+ E G +G+++ P + + + I D +GDL +D+ G
Sbjct: 337 ---KVEVGE-VGELLIRGPNVMKEYWNRPDATEETI-------QDGWLCTGDLARVDEDG 385
Query: 507 YLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
++Y R + GEN+ EVE V++ S+ + V G
Sbjct: 386 FVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGR 427
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 103 bits (259), Expect = 2e-23
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 40/275 (14%)
Query: 37 VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 96
VI T ++EA SNR+A+ A GL++GD VA++LEN PEF ++ + G+
Sbjct: 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62
Query: 97 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 156
IN +L + + ++ +G I A L D E++ L + V L +
Sbjct: 63 YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLL------VVAG 116
Query: 157 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK--------------- 201
PVP ++ L+ P +P + +Y+SGTTG PK
Sbjct: 117 PVPGFRSYEEALAAQPDTPIADETAGAD-----MLYSSGTTGRPKGIKRPLPGLDPDEAP 171
Query: 202 --AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 259
+ Y ++ +P PLYHTA AL G VV+ +
Sbjct: 172 GMMLALLGFGMYGGPDSVY-----------LSPAPLYHTAPLRFG-MSALALGGTVVVME 219
Query: 260 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK 294
KF A + + +Y+ T Q + M +L PE+
Sbjct: 220 KFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEE 254
Score = 28.7 bits (65), Expect = 8.3
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 497 GDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GD+ +D+ GYLY DR D G N+ E+E ++ + D V+GV
Sbjct: 374 GDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGV 425
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 100 bits (251), Expect = 2e-22
Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 30/300 (10%)
Query: 19 DLTIADIFREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
IAD+F E + P++V + + T ++E +NR+A++ +AQGL GD V +
Sbjct: 2 AWNIADLF-EAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYA 60
Query: 78 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
NR E+V LG K + +N+ ++ L + ++ + A +Y E V E+
Sbjct: 61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
L ++ D S + +P + L+ R D L +YT GTT
Sbjct: 121 L-PKLRTLVVVED-GSGNDLLPGAVDYEDALAAGSPERDFGE-RSP--DDLYLLYTGGTT 175
Query: 198 GLPKAAVISNHRYYF-LGGAIA----------YQIGFRTKDRFYTPL----PLYHTAG-- 240
G+PK + + L G ++ R PL H AG
Sbjct: 176 GMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW 235
Query: 241 GAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGE-MCRYLLSTPEKPED 297
A AL G VV+ +F A + + + K V +G+ M R LL E
Sbjct: 236 AAF---AALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGP 292
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 95.6 bits (238), Expect = 7e-21
Identities = 112/526 (21%), Positives = 171/526 (32%), Gaps = 90/526 (17%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
A R P+ + + T + +A+ GL +G+ VA+ L+ R E V G
Sbjct: 10 AARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFG 69
Query: 90 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW-S 148
+ G + IN L+ + H + V + +E D + L
Sbjct: 70 AALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD 129
Query: 149 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 208
P S P + LL+ PP V D +YTSG+TG PK V+S H
Sbjct: 130 PAHASEGHPGEEPASWPKLLALGDADPPH---PVIDSDMAAILYTSGSTGRPKGVVLS-H 185
Query: 209 RYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 267
R G ++A + R DR LPL G + A G VV+ +
Sbjct: 186 RNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVL 244
Query: 268 SDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIW-SEFVDRFRIAQ 326
+ K+ T + + L L G P+ S A+
Sbjct: 245 KALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNAR 304
Query: 327 IGEFYGATEGNANI----ANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGL 382
+ YG TE + +D +P +IG + IP + ++R D
Sbjct: 305 LFLMYGLTEAFRSTYLPPEEVDRRPDSIG---KAIPNA-EVLVLREDG------------ 348
Query: 383 CTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTTY 442
+ C PGE G++V A +GY N+ + + F PP
Sbjct: 349 -SECAPGEE----GELVHRGALVA-MGYWNDPEKTAER-----------FRPLPPF---- 387
Query: 443 NKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVM 502
P + A SGD +
Sbjct: 388 -------------------PGELHL----------------------PELAVWSGDTVRR 406
Query: 503 DKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
D+ G+LYF R + + G VS EVE V + V +GV
Sbjct: 407 DEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGV 452
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 93.9 bits (234), Expect = 2e-20
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 33 SPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 92
+P++ FE + T ++ VA A G+KKGD VAL+++N E + + L +
Sbjct: 15 TPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQ 74
Query: 93 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 152
LG + L+N L + LL ++ A V I + + + ++
Sbjct: 75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK--------FAE--- 123
Query: 153 SSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI---SNHR 209
L P + + + +YTSGTTG PK VI NH
Sbjct: 124 ---------------LMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPK-GVIQTYGNHW 167
Query: 210 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 264
+ +G A+ +G D + +P++H +G ++ + +++I+G VV+ +KF A
Sbjct: 168 WSAVGSAL--NLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAE 219
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY+N +D+ ++ F+ D F +GD+ +D+ G+LY DR D GEN+ E+
Sbjct: 345 GYLNREDATRE----TFQ--DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEI 398
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ + + V GV
Sbjct: 399 EEVLLSHPGVAEAGVVGV 416
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 93.0 bits (232), Expect = 4e-20
Identities = 65/320 (20%), Positives = 117/320 (36%), Gaps = 10/320 (3%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
+T+ ++ A R +K ++F + T ++ A R A A G+ KGD VA+ N
Sbjct: 5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPN 64
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 139
P +V LG K G + +N + + + A +T L
Sbjct: 65 SPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP 124
Query: 140 S--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
+ +V + D + + L+ P + V D ++TSGTT
Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDFLAA------GDPAERAPEVDPDDVADILFTSGTT 178
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
G PK A++++ + A +G DR+ P +H G + L+ G ++
Sbjct: 179 GRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 315
F F + + TV M LL P++ + ++RL + +
Sbjct: 239 LPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALL 298
Query: 316 SEFVDRFRIAQIGEFYGATE 335
F + + YG +E
Sbjct: 299 ERFESELGVDIVLTGYGLSE 318
Score = 36.0 bits (84), Expect = 0.048
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 497 GDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GDL +D+ GYLY DR D F G NV EVE V+ + V GV
Sbjct: 397 GDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGV 448
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 88.6 bits (220), Expect = 1e-18
Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 41/329 (12%)
Query: 29 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 86
HA +P+K VI T ++++ SNR+A+ F + GLK+GD VA+ +EN ++ +
Sbjct: 6 HAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEV 65
Query: 87 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL-GSNVKLF 145
+ G+ +N +L + ++ +G A I A D + + G +L
Sbjct: 66 CWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLV 125
Query: 146 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 204
+ + ++ +P +P + +G D L Y+SGTTG PK
Sbjct: 126 LDGDGE------LEGFVGYAEAVAGLPATPIA-DESLG-TDML---YSSGTTGRPKGIKR 174
Query: 205 ------ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
+ GFR+ + +P PLYH+A + G V++
Sbjct: 175 PLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYHSAPQRAV-MLVIRLGGTVIVM 231
Query: 259 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR------- 311
+ F A Y + + +Y T Q + M +L PE+ DK +++ + L
Sbjct: 232 EHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK-YDL-----SSLEVAIHAAA 285
Query: 312 ---PQIWSEFVDRFRIAQIGEFYGATEGN 337
PQ+ + +D + I E+Y ATEG
Sbjct: 286 PCPPQVKEQMIDWWG-PIIHEYYAATEGL 313
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 87.9 bits (218), Expect = 2e-18
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 21/339 (6%)
Query: 18 KDLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 75
TI D F R P++ ++ + +T +Q+ +R+A LA G++ GD V +
Sbjct: 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGI 75
Query: 76 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDA 130
N E++ +++G I IN R + L + + +GV I ++
Sbjct: 76 WAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAM 135
Query: 131 VQEISTSLGSNVKLFSWSPDTDS-------SSSPVPRSQALSPLLSEVPT-SPPSLSYRV 182
+QE+ L + +P P A L + T S +L+ R
Sbjct: 136 LQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQ 195
Query: 183 GVQDKLIYI---YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA 239
D+ I YTSGTTG PK A +S+H G +A +G DR P+PLYH
Sbjct: 196 ASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255
Query: 240 GGAMCIGQALIFGCCVVI-RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 298
G + + G C+V + F V + +CT + M L P++
Sbjct: 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD 315
Query: 299 AHNVR--LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
++R +M G ++ +D +A++ YG TE
Sbjct: 316 LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354
Score = 32.1 bits (73), Expect = 0.90
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 467 RAY---LGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGE 523
R Y GY N ++ + + D +GDL MD+ GY+ R+ D GE
Sbjct: 405 RGYSVMKGYWNNPEATAESID-----EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGE 459
Query: 524 NVSTCEVEGVVSNASEYRDCVVYGV 548
N+ E+E + D V+GV
Sbjct: 460 NIYPREIEEFLFTHPAVADVQVFGV 484
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 86.0 bits (213), Expect = 1e-17
Identities = 78/346 (22%), Positives = 134/346 (38%), Gaps = 26/346 (7%)
Query: 4 RYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFL 63
RYLR + A RR + F A R P++ + E T ++++ S+ +A
Sbjct: 30 RYLRIVAAMRRE---GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQ 86
Query: 64 AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY 123
A + + V +M N FV L +++G L+N + +L + GV IY
Sbjct: 87 ALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIY 146
Query: 124 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYR 181
E + V ++ +W D D +L P
Sbjct: 147 DEEFSATVDRALADCPQATRIVAW-TDEDH--------DLTVEVLIAAHAGQRPE----P 193
Query: 182 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 241
G + ++I + TSGTTG PK A S AI + +R ++ P++H G
Sbjct: 194 TGRKGRVI-LLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF 252
Query: 242 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN 301
+ + A C +V R++F + +++ T + M ++ P + ++
Sbjct: 253 SQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSG 311
Query: 302 VRLMF----GNGLRPQIWSEFVDRFRIAQIGEFYGATE-GNANIAN 342
L F G+ +RP + F+D+F I Y ATE G A
Sbjct: 312 RSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGMIATAT 356
Score = 29.0 bits (65), Expect = 7.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 496 SGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
SGD+ +D+ G L+ R + GENV EVE ++ + + V GV
Sbjct: 420 SGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGV 472
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 84.1 bits (209), Expect = 1e-17
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 192 YTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
YTSGTTG PK A+++ HR G +IA ++G DR P+PL+H G + + +L
Sbjct: 9 YTSGTTGRPKGAMLT-HRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLT 67
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 309
G +V+ +KF + + + T + M LL P+ + ++R G
Sbjct: 68 AGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTGISGGA 127
Query: 310 LRPQIWSEFVDR----FRIAQIGEFYGATEGNANIA------NIDNQPGAIGFVSRLIPT 359
P E V R F +A+I YG TE + +++PG +G R +P
Sbjct: 128 PVP---PELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG---RPLPG 181
Query: 360 IYPISIIRVDPVTSEPIRNKKG-LCTR 385
+ + I VDP E + G +C R
Sbjct: 182 V-EVKI--VDPDGGEVPPGEVGEICVR 205
Score = 51.4 bits (124), Expect = 6e-07
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 453 PGVFI------GKIVPSNP-----ARAY---LGYVNEKDSAKKIVTDVFEIGDSAFLSGD 498
PGV + G VP R Y GY N+ ++ + + D +GD
Sbjct: 180 PGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAID-----ADGWLHTGD 234
Query: 499 LLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
L MD+ GYL R D GEN+ E+E + + V GV
Sbjct: 235 LGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGV 284
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 83.8 bits (208), Expect = 4e-17
Identities = 93/405 (22%), Positives = 147/405 (36%), Gaps = 81/405 (20%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T ++E R+A A+G +KGD V L+ N EF ++L + G + N
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
+ + +G I +EL + + ++ V L S S A+
Sbjct: 94 AEIAKQVKDSGAKLAITTSELAEKLASLALE---PVVLLD---------SADDGSAAIDD 141
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY---------FLGGAI 217
LL PP + + D Y+SGTTG K +++ HR G
Sbjct: 142 LLFADEPEPPVV--VIKQDDVAALPYSSGTTGRSKGVMLT-HRNLIANVAQLVAGEGPNF 198
Query: 218 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
+ D LP++H G + + L G VV+ +F + + + KYK T
Sbjct: 199 DRE------DVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVT- 251
Query: 278 GQYIGEMCRYLLSTP-----------EKPEDKAHNVRLMFGNG-LRPQIWSEFVDRFRIA 325
+L P D + ++ G L ++ F RF
Sbjct: 252 ---------HLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGV 302
Query: 326 QIGEFYGATEGNANIANIDNQ-----PGAIGFVSRLIPTIYPISIIRVDPVTSEPI-RNK 379
++G+ YG TE + PG++G RL+P + I VDP T E + N+
Sbjct: 303 ELGQGYGMTESSPVTTMCPVPEKDPKPGSVG---RLVPNV-EAKI--VDPETGESLPPNQ 356
Query: 380 KG-LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD 423
G L R P V G YL N + +A+ I D
Sbjct: 357 PGELWVR----GPQVMKG----------YLN--NPEATAETIDKD 385
Score = 32.2 bits (74), Expect = 0.85
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY+N ++ + + D +GDL D+ GYL+ DR + ++KG V+ E+
Sbjct: 370 GYLNNPEATAETID-----KDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAEL 424
Query: 531 EGVVSNASEYRDCVVYGV 548
E ++ + E D V
Sbjct: 425 EALLLSHPEIADAAVIPY 442
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 83.8 bits (207), Expect = 6e-17
Identities = 92/442 (20%), Positives = 159/442 (35%), Gaps = 63/442 (14%)
Query: 7 RFLWAARRVA-QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ 65
R +W A LTI +F E A +P+ V + + T +++A +NR+A ++
Sbjct: 213 REVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL 272
Query: 66 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 125
G+ G++VA++ + E V L + K G ++ L A+I
Sbjct: 273 GVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERL----------AYILED 322
Query: 126 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 185
+ + +V L + D LSE+P + P + +
Sbjct: 323 SRPTLLLTQAHLRVDDVGLPGLALDDA---------------LSEIPDTDP--IPQALLG 365
Query: 186 DKLIY-IYTSGTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 242
D L Y IYTSG+TG PK I HR L A A G DR L
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIE-HRALANLLNDAGAR-FGLDADDRV-LALASLSFDASV 422
Query: 243 MCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 299
I AL+ G +V+ + + TV + + R LL P+ +
Sbjct: 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS 482
Query: 300 H--NVRLMF--GNGLRPQIWSEFVDRFRIAQ-IGEFYGATEGNANIANIDNQPGAIGFVS 354
+R + G L + + +A+ + YG TE + +
Sbjct: 483 PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL----E 538
Query: 355 RLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPG-VFIGKIVPSNPARAYLGYVN- 412
+P P++ ++ + + +R G PG ++I + A GY+N
Sbjct: 539 SRVPIGRPVANTQL-YILDQGLR-------PLPLGVPGELYIAGL---GLAL---GYLNR 584
Query: 413 -EKDSAKKIVTDVFEIGDSAFL 433
+ + + I ++ GD A
Sbjct: 585 PDLTAERFIALRLYRTGDLARP 606
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 83.6 bits (207), Expect = 6e-17
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 23/299 (7%)
Query: 1 ALQRYLRFLWAAR------RVAQ---KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 51
A LR L A R + + + + R A P + +F T ++
Sbjct: 5 AYLAELRALQQAAWPAGIPREPEYPHGERPLTEYLRAWARERPQRPAIIFYGHVITYAEL 64
Query: 52 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 111
+ S+R A +G+ GD VA+ L N P+F ++ G+ KLG + ++ R++ L +
Sbjct: 65 DELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSY 124
Query: 112 CINIAGVSAFIYGAELTDAVQE----------ISTSLGSNVKLFSWSPDTDSSSSPVPRS 161
+N AG + +L V++ I TSL + P DS +P +
Sbjct: 125 ELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAA 184
Query: 162 QALSPLLSEVPTSP-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ 220
LL + P + YT GTTG+PK R A AY
Sbjct: 185 AGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPK-GCEHTQRDMVYTAAAAYA 243
Query: 221 IGF--RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
+ F + LP + AG + L G +V+ ++ A + + V +Y+ T
Sbjct: 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTR 302
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 81.6 bits (202), Expect = 2e-16
Identities = 92/404 (22%), Positives = 140/404 (34%), Gaps = 100/404 (24%)
Query: 44 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 103
E+T Q++ SNR+AN G+++GD V + L PE L + KLG ++ ++
Sbjct: 5 EEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64
Query: 104 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 163
+++ H + +G + TD S P
Sbjct: 65 FGPDAVEHRLRDSGARVLV----------------------------TDGSDDPA----- 91
Query: 164 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 223
I IYTSGTTG PK A+ HR LG ++ F
Sbjct: 92 -------------------------ILIYTSGTTGPPKGALHG-HR-VLLGHLPGVELYF 124
Query: 224 ----RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTV 277
R D F+TP G + AL FG VV ++F F+ + +Y T
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184
Query: 278 GQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGN---GLRPQIWSEFVDRFRIAQIGEFYGA 333
+ + + +R + G G W+ D + + EFYG
Sbjct: 185 AFLPPTALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWAR--DELGLT-VNEFYGQ 241
Query: 334 TEGNANIAN----IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPG 389
TE N + N +PG++G P + V P+ PG
Sbjct: 242 TEANLVVGNCAALGPARPGSMG-------KPVPGHEVAVVDDAGRPV----------PPG 284
Query: 390 EPGVFIGKIVPSNP-ARAYLGYVNEKD-SAKKIVTDVFEIGDSA 431
E +G+I P +LGY N + +A K D GD
Sbjct: 285 E----VGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLG 324
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 468 AYLGYVNEKD-SAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVS 526
+LGY N + +A K L+GDL D GYL+FK R D + G +
Sbjct: 298 MFLGYWNNPEATAAKFA-------GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIG 350
Query: 527 TCEVEGVVSNASEYRDCVVYGV 548
E+E + + V GV
Sbjct: 351 PAEIEECLLKHPAVLEAAVVGV 372
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 80.2 bits (199), Expect = 2e-16
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 4/153 (2%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
+YTSGTTG PK ++++ + D + PLYH AGG + AL
Sbjct: 7 LYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL-PALA 65
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 309
G VV+ KF + +++ T + M + LL P+ ++RL+
Sbjct: 66 AGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAA 125
Query: 310 -LRPQIWSEFVDRFRIAQIGEFYGATEGNANIA 341
+ ++ + + + YG TE
Sbjct: 126 PMPAEL-KRAMIEWFGPVFVQGYGMTETGPTTT 157
Score = 42.1 bits (100), Expect = 5e-04
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 457 IGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
+G+IV PA GY N ++ + + D +GDL +D+ GYLY DR D
Sbjct: 195 VGEIVVRGPAV-MAGYWNRPEATAE------ALRDGWLHTGDLGYLDEDGYLYIVDRKKD 247
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ EVE V+ D V GV
Sbjct: 248 MIISGGENIYPAEVENVLLAHPAVADVAVIGV 279
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 80.0 bits (198), Expect = 3e-16
Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 41/258 (15%)
Query: 185 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAGG 241
D + ++TSGTTG PK + H+ A ++++ DR +PL+H G
Sbjct: 2 DDPALILHTSGTTGRPKGVPL-THKNLLASARNIAKSHKLTPS--DRCLNVMPLFHIHGL 58
Query: 242 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE-KPEDKAH 300
+ + L+ G VV KFSAS ++ D+ KY+ T + + + LL T + P
Sbjct: 59 IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP 118
Query: 301 NVRLM--FGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN-----IDNQPGAIGFV 353
+R + L P + RF + E YG TE IA+ + +PG++G
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFG-VPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP 177
Query: 354 SRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPA--RAYLGYV 411
+ + I + G P PG G+IV P YL
Sbjct: 178 -------AGVEVA---------ILDDDG-----RPLPPGQ-EGEIVIRGPNVTAGYLN-- 213
Query: 412 NEKDSAKKIVTDVFEIGD 429
N + + + F GD
Sbjct: 214 NPEANREAFRDGWFRTGD 231
Score = 38.4 bits (90), Expect = 0.008
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 452 EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFK 511
PG G+IV P GY+N ++ ++ D + F +GDL +D+ GYL+
Sbjct: 193 PPGQ-EGEIVIRGP-NVTAGYLNNPEANREAFRDGW------FRTGDLGYLDEDGYLFLT 244
Query: 512 DRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
R + GE +S EVE V+ + VV+GV
Sbjct: 245 GRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGV 281
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 80.3 bits (199), Expect = 5e-16
Identities = 53/216 (24%), Positives = 72/216 (33%), Gaps = 61/216 (28%)
Query: 44 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 103
T ++ R+A +A G+K GD VA++ ENRPE+V ++ L ++ A
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWV-----IADLAILAA----- 53
Query: 104 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 163
V IY + V I G+ V PD
Sbjct: 54 ------------GAVPVPIYPTSSPEEVAYILNDSGARVVFVEDKPD------------- 88
Query: 164 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--I 221
D IYTSGTTG PK +++ HR L A A I
Sbjct: 89 ----------------------DLATLIYTSGTTGNPKGVMLT-HR-NLLAQAAALLEVI 124
Query: 222 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
DR + LPL H + L G V
Sbjct: 125 PLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF 160
Score = 37.9 bits (89), Expect = 0.012
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRW-KGENVSTCE 529
GY ++ + + + D +GD+ +D+ G+L DR D G+N++
Sbjct: 295 GYYKNPEATAEALDE-----DGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQP 349
Query: 530 VEGVVSNASEYRDCVVYG 547
+E + + VV G
Sbjct: 350 IENALKASPYISQAVVVG 367
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 79.8 bits (197), Expect = 6e-16
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 29/217 (13%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T Q ++ + +A AQG++ G VAL+ +N E V L LG A++N L +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
N E T+ ++++ L L D + S + R +A
Sbjct: 61 N------------------ERTNQLEDLDVQLLLTDSLLE-EKDFQADS--LDRIEAAGR 99
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 226
SLS + ++TSGTTG PKA + +Y +GF
Sbjct: 100 -------YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED 152
Query: 227 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 263
D + LPLYH +G ++ + + LI G + I KF+
Sbjct: 153 DNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKFNQ 188
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 470 LGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
GY+ + + + + G F +GD+ +D G+LY R D GEN+ E
Sbjct: 304 KGYLYQGE----LTPAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEE 357
Query: 530 VEGVVSNASEYRDCVVYGV 548
+E V+ ++ VV
Sbjct: 358 IETVLYQHPGIQEAVVVPK 376
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 80.0 bits (198), Expect = 7e-16
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 9/209 (4%)
Query: 44 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 103
E+T QV + R+A + GL+ GD +A++ +N E++ L + G ++ +
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 104 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 163
L ++ + + + A G D + + + P S +
Sbjct: 65 LTAETIRYVLEHSDAKALFVGK--LDDWDAMKAGVPEGLPTIILFP-----YSTLKDHYK 117
Query: 164 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 223
LL+ T P +D +YTSGTTG PK ++S + F IG
Sbjct: 118 WDDLLAA--TEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGL 175
Query: 224 RTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
DR + LPL H A + G +L G
Sbjct: 176 TPNDRLLSYLPLAHIAERVIVEGGSLYSG 204
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 78.5 bits (194), Expect = 2e-15
Identities = 89/418 (21%), Positives = 165/418 (39%), Gaps = 50/418 (11%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+ R +K+ +++ T +++ NR N G+++ + V L+L + PEF
Sbjct: 10 LDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFP 69
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
+ G K+G + IN L + + +N + + EL + ++ +
Sbjct: 70 TAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHV 129
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
+ S + L TS +++ ++Y+SG+TG PK V
Sbjct: 130 IVVGGAGPGALSYAQLIATAAEELEAAATSADDMAF---------WLYSSGSTGRPKGVV 180
Query: 205 ISNHRYYFLGGAIAYQI-GFRTKDRFYTPLPLYHTAGGAMCIGQALIF-----GCCVVIR 258
+H A A + G D ++ L+ G +G L F V++
Sbjct: 181 HLHHDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYG----LGNGLYFPLSVGATTVLMP 236
Query: 259 KKFSASNYFSDVCKYKCTVGQYIGEMCRY--LLSTPEKPEDKAHNVRLMF--GNGLRPQI 314
++ + F+ + +YK TV + G Y +L+ PEKPE ++RL G L +I
Sbjct: 237 ERPTPDAVFATIERYKPTV--FFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEI 294
Query: 315 WSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAI--GFVSRLIPTIYPISIIRVDPVT 372
+ + F + +I + G+TE + N+PGA+ G + +P Y + + VD
Sbjct: 295 GYRWKELFGL-EILDGIGSTE--MLHIFLSNRPGAVKYGTSGKPVPG-YEVKL--VDEDG 348
Query: 373 SEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGD 429
E GE G + S+ A GY N ++ + + V + GD
Sbjct: 349 EE-----------VADGEIGELWVR-GDSSAA----GYWNRREKTRETFVGEWTRTGD 390
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+GD D+ GY ++ R+ D + G VS EVE + + V G
Sbjct: 386 TRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGA 440
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 78.5 bits (194), Expect = 2e-15
Identities = 63/278 (22%), Positives = 93/278 (33%), Gaps = 27/278 (9%)
Query: 18 KDLTIADIFREHAVRSPNKVIFM-FENTEW---TAQQVEAYSNRVANFFLAQGLKKGDSV 73
+ T+ E P+ V M E W T +++ +A+ L+ G+ GD V
Sbjct: 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRV 73
Query: 74 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA-ELTDAVQ 132
A+ NRPE+ L + LG ++ I L + +N + EL D V
Sbjct: 74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVL 133
Query: 133 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP-----LLSEVPTSPPSLSYRVGVQDK 187
+ V L + + P L D
Sbjct: 134 PVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDL 193
Query: 188 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-GFRTKDRFYTP-------LPLYHTA 239
IYTSGTTG PK +++ HR + Q+ G P LPL H
Sbjct: 194 ATIIYTSGTTGTPKGVMLT-HR------NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIF 246
Query: 240 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
A G AL G V+ K D+ + + TV
Sbjct: 247 ERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTV 282
Score = 33.1 bits (76), Expect = 0.48
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRW-KGENVSTCE 529
GY ++ + T+ D F +GDL +D+ GYL R + + G+N++
Sbjct: 433 GYYKNPEATAEAFTE-----DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEP 487
Query: 530 VEGVVSNASEYRDCVVYG 547
+E ++ + V G
Sbjct: 488 IESKLAKSPLIEQICVVG 505
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 77.9 bits (192), Expect = 4e-15
Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 13/264 (4%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
D ++AD +++ A P+K I + +N +T ++ ++R+AN+ LA+G++ GD VA
Sbjct: 22 DASLADYWQQTARAMPDK-IAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQ 80
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL--TDAVQEI 134
L EF ++L K+G ++ + + R+ L+ +N F T V I
Sbjct: 81 LPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLI 140
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ-DKLIYI-Y 192
L + + D + P + +LS LS++ L+ + D+L + +
Sbjct: 141 -LPLQNQLPQLQQIVGVDKLA---PATSSLS--LSQIIADYEPLTTAITTHGDELAAVLF 194
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
TSGT GLPK +++++ A ++ +D F P PL H G + + G
Sbjct: 195 TSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 253 CCVVIRKKFSASNYFSDVCKYKCT 276
V+ F+ + + + +CT
Sbjct: 255 ARSVLLDIFTPDACLALLEQQRCT 278
Score = 44.0 bits (104), Expect = 2e-04
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 469 YLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
++GY++E + + + + + + SGDL MD+ GY+ R D GEN+S+
Sbjct: 392 FMGYLDEPELTARALDE-----EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSR 446
Query: 529 EVEGVVSNASEYRD-CVV 545
EVE ++ + D CVV
Sbjct: 447 EVEDILLQHPKIHDACVV 464
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 76.5 bits (189), Expect = 8e-15
Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 55/293 (18%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T +++ ++R+A G++ GD VA L N EFV ++L +++G + I R+
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
L + A
Sbjct: 63 RELGFILRQARARVLF-------------------------------------------- 78
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 225
VP Y + D + + YTSGTTG PK + +++ + ++G
Sbjct: 79 ----VPDEFRGFDY-AAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP 133
Query: 226 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC 285
D P PL H G + L+ G VV++ ++ + + ++ T
Sbjct: 134 DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFL 193
Query: 286 RYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFR---IAQIGEFYGATE 335
LL+ + ++R+ G + E R A++ YG TE
Sbjct: 194 ADLLAAADAAGPDLPSLRVFLCGG--APVPRELARRAAEALGAKVVRAYGMTE 244
Score = 39.5 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 470 LGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
LGY++ D+ + D + F +GDL +D GYL R D GEN+S E
Sbjct: 300 LGYLDPPDNTEAFTDDGW------FRTGDLGRLDADGYLRITGRKKDIIIRGGENISARE 353
Query: 530 VEGV 533
+E +
Sbjct: 354 IEDL 357
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 76.7 bits (189), Expect = 9e-15
Identities = 96/431 (22%), Positives = 161/431 (37%), Gaps = 43/431 (9%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
T+A + HA P+ V + E+ + ++ A +R+A + AQG+++GD VA+ L N
Sbjct: 11 TLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNC 70
Query: 81 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQEIS 135
E+V L+L ++LG +N R + + H + + G + + +
Sbjct: 71 IEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVP 130
Query: 136 TSLGSNVKLFSWSPDTDSSSSPVP-RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY-T 193
++ + D + ++P P + P P + R D ++ T
Sbjct: 131 PDALPPLRAIA-VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTT 189
Query: 194 SGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
SGTT PK + HR L AIA G+ LP G + +G AL
Sbjct: 190 SGTTSGPKLVL---HRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLG-ALA 245
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 310
G +V F A+ + +++ T EM R +L T + D F +
Sbjct: 246 GGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFAS-F 304
Query: 311 RPQIWSEFVDRFRI--AQIGEFYGATEGNANIANIDNQPGAIGFVSRLIP---TIYPISI 365
P E R + YG++E A +A QP R+ P +
Sbjct: 305 APA-LGELAALARARGVPLTGLYGSSEVQALVA---LQPATDPVSVRIEGGGRPASPEAR 360
Query: 366 IRV-DPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD- 423
+R DP GE G+I P+ GY++ D+ + +TD
Sbjct: 361 VRARDPQDGA----------LLPDGES----GEIEIRAPSL-MRGYLDNPDATARALTDD 405
Query: 424 -VFEIGDSAFL 433
F GD +
Sbjct: 406 GYFRTGDLGYT 416
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
G G+I P+ GY++ D+ + +TD D F +GDL G +
Sbjct: 372 LPDGE-SGEIEIRAPSL-MRGYLDNPDATARALTD-----DGYFRTGDLGYTRGDGQFVY 424
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ R GD+ R G V+ E+E + V G
Sbjct: 425 QTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA 462
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 75.2 bits (186), Expect = 3e-14
Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 62/279 (22%)
Query: 19 DLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
+ TI + A R P++ +++ + WT ++ + +A LA G++KGD V +
Sbjct: 15 EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW 74
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---------YGAEL 127
N PE+V +K+G I IN R + L + +N +G A I Y A L
Sbjct: 75 APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAML 134
Query: 128 TDAVQEISTSLGSNVK--------------------LFSWSPDT--DSSSSPVPRSQALS 165
+ E++T ++ + ++ + + A
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNF-DELLALGRAVDDAELAARQ 193
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-----YFLGGAIAYQ 220
L P P + +Q YTSGTTG PK A ++ HR YF+G A
Sbjct: 194 ATLD--PDDP------INIQ------YTSGTTGFPKGATLT-HRNILNNGYFIGEA---- 234
Query: 221 IGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALIFGCCVVI 257
+ +DR P+PLYH G M +G + G +V
Sbjct: 235 MKLTEEDRLCIPVPLYHCFG--MVLGNLACVTHGATMVY 271
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 74.5 bits (183), Expect = 4e-14
Identities = 96/433 (22%), Positives = 168/433 (38%), Gaps = 64/433 (14%)
Query: 21 TIADIFREHAVRSPNKVIFM--FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ + T ++ A VA A+G++ VA++
Sbjct: 2 TVFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAP 61
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY--GAELTDAVQEIST 136
N + V L L +LG + AL+N L+ + I ++A + A++ DA+ +
Sbjct: 62 NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQ--- 118
Query: 137 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 196
GS V++ + D P ++ P + + P P + YTSGT
Sbjct: 119 -SGSGVRVLALG-DLVGLGEP----ESAGPPIEDPPREP---------EQPAFVFYTSGT 163
Query: 197 TGLPKAAVISNH----RYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 250
TGLPK AVI R F+ + Q G R + +PLYH G + AL
Sbjct: 164 TGLPKGAVIPQRAAESRVLFM----STQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALA 219
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 306
V+ ++F ++ + + + T ++ + P K + H + F
Sbjct: 220 LDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEH---VTF 276
Query: 307 GNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAI---GFVSRLIPTIYPI 363
P E V++ + YG TE ++ D + G GF S +
Sbjct: 277 AGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRTGTEMRPGFFSE-------V 329
Query: 364 SIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVT 422
I+R+ E + N E GE +V + A + GY+N+ +A+K+
Sbjct: 330 RIVRIGGSPDEALPNG-------EEGEL------VVAAADAT-FTGYLNQPQATAEKLQD 375
Query: 423 DVFEIGDSAFLSD 435
+ D A +
Sbjct: 376 GWYRTSDVAVVDP 388
Score = 36.0 bits (83), Expect = 0.051
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 458 GKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
G++V + + GY+N+ +A+K+ D + + D+ V+D G + R D
Sbjct: 348 GELVVAAADATFTGYLNQPQATAEKLQ-------DGWYRTSDVAVVDPSGTVRILGRVDD 400
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GEN+ EVE V+ A + VV G+
Sbjct: 401 MIISGGENIHPSEVERVLGRAPGVTEVVVIGL 432
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 73.5 bits (181), Expect = 9e-14
Identities = 64/286 (22%), Positives = 115/286 (40%), Gaps = 31/286 (10%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLENRPEFVCLW 87
A R P+K +F + +++ + R+A + L Q G++KGD V L ++N P+FV +
Sbjct: 20 ARRYPDKTAIVFYGRAISYRELLEEAERLAGY-LQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 88 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFS 146
+ + + +N R+ L H + +G I G+EL V +L +V +
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 147 WSPDTDSSSSPVP-----RSQALSPLLSEVPTSP---------PSLSYRVGVQDKLIYIY 192
+S D + + R++ L+ + G D + Y
Sbjct: 139 YS-DYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPY 197
Query: 193 TSGTTGLPKAAVISNHR---YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 249
TSGTTG+PK + HR +G + + LPL+H G + +
Sbjct: 198 TSGTTGVPKGC-MHTHRTVMANAVGSVLWSNSTP--ESVVLAVLPLFHVTGMVHSMNAPI 254
Query: 250 IFGCCVVIRKKF---SASNYFSDVCKYKCTVGQYIGEMCRYLLSTP 292
G VV+ ++ +A+ +Y+ T I M L++P
Sbjct: 255 YAGATVVLMPRWDREAAARLIE---RYRVTHWTNIPTMVVDFLASP 297
Score = 30.3 bits (69), Expect = 3.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 457 IGKIVPSNPARAYLGYVNEKDSAKKIVTDVF-EIGDSAFL-SGDLLVMDKWGYLYFKDR 513
+G+IV P + + GY N ++ + F EI F +GDL MD+ GY + DR
Sbjct: 384 VGEIVVHGP-QVFKGYWNRPEATAE----AFIEIDGKRFFRTGDLGRMDEEGYFFITDR 437
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 73.0 bits (180), Expect = 1e-13
Identities = 96/381 (25%), Positives = 144/381 (37%), Gaps = 92/381 (24%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
+T ++A S R+AN +A G+K GD VA+ +E PE + L+L + G + +N
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFSWSPDTDSSSSPVPRSQAL 164
L + I A + + + +I+ + G +V + D D + S + + A
Sbjct: 89 LAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHV----ETLDADGTGSLLEAAAAA 144
Query: 165 SPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV------ISN----HRYYFL 213
VP D L I YTSGTTG K A+ +SN Y+
Sbjct: 145 PDDFETVPRGA----------DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-- 192
Query: 214 GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKY 273
F D LP++HT G + AL+ G ++ KF
Sbjct: 193 --------RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPD--------- 235
Query: 274 KCTVGQYIGEMCR----------Y--LLSTPEKPEDKAHNVRLMFGNG---LRPQIWSEF 318
+ M R Y LL P + A ++RL F +G L + EF
Sbjct: 236 -----AVLALMPRATVMMGVPTFYTRLLQEPRLTREAAAHMRL-FISGSAPLLAETHREF 289
Query: 319 VDRFRIAQIGEFYGATEGNANIANI---DNQPGAIGFVSRLIPTIYP---ISIIRVDPVT 372
+R A I E YG TE N N +N + + G +GF P +S+ DP T
Sbjct: 290 QERTGHA-ILERYGMTETNMNTSNPYDGERRAGTVGF---------PLPGVSLRVTDPET 339
Query: 373 SEPIRNKKGLCTRCEPGEPGV 393
PGE G+
Sbjct: 340 GAE----------LPPGEIGM 350
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 72.3 bits (178), Expect = 2e-13
Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 7/218 (3%)
Query: 26 FREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
F E A + P++ ++ + +T ++ R+A+ G+ KGD VA++ N P +
Sbjct: 9 FLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAML 68
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
G+ G + +N L + + +N + E +E L + +
Sbjct: 69 EAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEII 128
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAA 203
+ ++ LL+ P L + I + YTSGTTG PK
Sbjct: 129 DTEIIVISPAAEDSEEGDYED-LLAG--GDPDPLPIPPDDEWDPISLNYTSGTTGNPKGV 185
Query: 204 VISNHRYYFLGGAIA-YQIGFRTKDRFYTPLPLYHTAG 240
V + HR +L + G + + LP++H G
Sbjct: 186 VYT-HRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNG 222
Score = 48.4 bits (116), Expect = 8e-06
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F SGDL V+ GY+ KDR+ D GEN+S+ EVEGV+ + V
Sbjct: 403 FHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVAR 457
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 71.1 bits (175), Expect = 5e-13
Identities = 80/355 (22%), Positives = 134/355 (37%), Gaps = 86/355 (24%)
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 119
+ + K+G+++ +ML + L L G + ++N + L AG+
Sbjct: 24 IKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVI 83
Query: 120 ---AFIYGAELTDAV-----------QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 165
AF+ +L V +++ + KL ++ + L
Sbjct: 84 TSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLKAFL------------AAKLP 131
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 225
P L + + D + ++TSG+ GLPK V+S+ IA I T
Sbjct: 132 PALLRLFLAGAKPD------DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNT 185
Query: 226 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD----------VCKYKC 275
+D LPL+H G + + L+ G VV Y+ + + YK
Sbjct: 186 EDVLLGALPLFHAFGLTVTLLLPLLTGLRVV---------YYPNPLDAKKIAELIRDYKA 236
Query: 276 TVGQYIGEMCRYLLSTPE---------KPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRI 324
T+ L TP PED + ++RL+ L F ++F I
Sbjct: 237 TI----------LCGTPTFLRGYARNAHPEDFS-SLRLVVAGAEKLPEATRELFEEKFGI 285
Query: 325 AQIGEFYGATEGNANIA-N--IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPI 376
+I E YGATE + I+ N + N+PG +G R +P I + V P T E +
Sbjct: 286 -RILEGYGATECSPVISVNTPMGNKPGTVG---RPLPG---IEVRIVSPETHEEL 333
Score = 30.3 bits (69), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 470 LGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 513
GY+N ++ +V +GD + +GD+ +D+ G+L R
Sbjct: 350 SGYLNNEEKTS----EVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 70.7 bits (173), Expect = 6e-13
Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 24/311 (7%)
Query: 29 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 88
HA R+P++ ++ + E + + + A A+G+ +GD VAL+++N F+ L
Sbjct: 11 HARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAF 70
Query: 89 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 148
S LG + IN+ L + + + + AG + E + +L + + +
Sbjct: 71 AASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-----DAIVALETPKIVIDAA 125
Query: 149 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 208
DS + P+ R+ +YTSGTT PK + S
Sbjct: 126 AQADSRRLAQGGLEI-----PPQAAVAPTDLVRL--------MYTSGTTDRPKGVMHSYG 172
Query: 209 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI-GQALIF-GCCVVIRKKFSASNY 266
++ +G +R PLYH GA + G A+++ G + I ++F
Sbjct: 173 NLHWKSIDHVIALGLTASERLLVVGPLYHV--GAFDLPGIAVLWVGGTLRIHREFDPEAV 230
Query: 267 FSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP--QIWSEFVDRFRI 324
+ + +++ T M +L+ P++ ++ G G + +F F
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTR 290
Query: 325 AQIGEFYGATE 335
A+ + YG TE
Sbjct: 291 ARYIDAYGLTE 301
Score = 48.0 bits (114), Expect = 8e-06
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F SGD+ +D+ G+LY DR D GEN+++ EVE V+ E + V GV
Sbjct: 375 FRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGV 429
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 69.5 bits (171), Expect = 1e-12
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 57/223 (25%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
A P + + T QQ+ A +++A F QG+ +G VAL +N PE + +L
Sbjct: 13 AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72
Query: 90 LSKLGVITALIN----HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 145
L + G +N L + LL + + + L
Sbjct: 73 LLQCGARVLPLNPQLPQPLLE-ELLPSLTLD------FALVLEGENT------------- 112
Query: 146 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 204
+S T V + A++ P ++ TSG+TGLPKAAV
Sbjct: 113 -FSALTSLHLQLVEGAHAVAWQ----PQRLATM------------TLTSGSTGLPKAAVH 155
Query: 205 -ISNHRYYFLGGAIAYQIG------FRTKDRFYTPLPLYHTAG 240
H +A G F +D + LPL+H +G
Sbjct: 156 TAQAH--------LASAEGVLSLMPFTAQDSWLLSLPLFHVSG 190
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 69.8 bits (171), Expect = 1e-12
Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 26/283 (9%)
Query: 10 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 62
W + +D T+ DI +HA R P+++ + + +++ ++R+A
Sbjct: 11 WPEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGL 70
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI--TALINHNLRQNSLLHCINIAGVSA 120
G+K GD+V + L N EF + L +LGV AL +H R + L + +
Sbjct: 71 RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSH--RASELGAFASQIEAAL 128
Query: 121 FI--YGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 178
I D + + L ++ V + P P P
Sbjct: 129 LIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPA-- 186
Query: 179 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 238
+ + + GTTG PK +++ YY+ A A GF + + LP H
Sbjct: 187 ----DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHN 242
Query: 239 AGGAMC----IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
+ +G + G VV+ S F + ++ TV
Sbjct: 243 F--PLSSPGALG-VFLAGGTVVLAPDPSPELCFPLIERHGVTV 282
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 69.4 bits (170), Expect = 2e-12
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 29 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 88
HA+ P+ F T ++++ +A +G+ GD V +++ NR EFV L
Sbjct: 26 HALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85
Query: 89 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD---AVQEISTSLGSNVKLF 145
+ LG I +N L + ++ G + A L AV++I L + V
Sbjct: 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAG 145
Query: 146 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 205
S D+ + + ++P P+L +YTSGTTG PK AV+
Sbjct: 146 GSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPAL-----------IMYTSGTTGRPKGAVL 194
Query: 206 SNHRY--------YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG-GAMCIGQALIFGCCVV 256
++ G I +GF +PL+H AG G+M G L+ G V
Sbjct: 195 THANLTGQAMTCLRTNGADINSDVGFVG-------VPLFHIAGIGSMLPG--LLLGAPTV 245
Query: 257 I 257
I
Sbjct: 246 I 246
Score = 42.8 bits (101), Expect = 3e-04
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 457 IGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
+G+IV P GY N + + F G F SGDL+ D+ GY++ DR D
Sbjct: 371 VGEIVYRAPT-LMSGYWNNP----EATAEAFAGG--WFHSGDLVRQDEEGYVWVVDRKKD 423
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYG 547
GEN+ EVE V+++ + + V G
Sbjct: 424 MIISGGENIYCAEVENVLASHPDIVEVAVIG 454
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 69.0 bits (169), Expect = 2e-12
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 57/294 (19%)
Query: 12 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 67
A R +K D + DI R+ A R P+ + + N +W+ ++++ ++ +A G+
Sbjct: 11 AERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGI 70
Query: 68 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHNLR---------QNSLLHCINIA 116
K+GD+ + L N EF ++ L KLGV + AL +H + +L I
Sbjct: 71 KQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALY--IIDR 128
Query: 117 GVSAFIYGAELTDAVQEISTSLGSNV-------KLFSW--SPDTDSSSSPVPRSQALSPL 167
S F Y ++ T V +LF W SP P +
Sbjct: 129 AHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQ 188
Query: 168 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKD 227
LS G+TG PK +++ YY+ +
Sbjct: 189 LS------------------------GGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQT 224
Query: 228 RFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
R+ LP H ++ GA+ + A G CVV+ S ++ F + ++K TV
Sbjct: 225 RYLCALPAAHNYPLSSPGALGVFYA---GGCVVLAPDPSPTDCFPLIERHKVTV 275
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 68.8 bits (169), Expect = 2e-12
Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 19/175 (10%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQ 247
IYTSGTTG PK V+++ A+ + D LPL+H G C
Sbjct: 94 IYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHC--- 150
Query: 248 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE---KPEDKAHNVRL 304
L G V +F + + TV + + LL E A N+RL
Sbjct: 151 PLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNLRL 210
Query: 305 MF-GNG-LRPQIWSEFVDRF--RIAQIGEFYGATEGNANIANI---DNQPGAIGF 352
G+ L + + +R + E YG TE ++N + +PG +G
Sbjct: 211 FVSGSAALPVPVLERWEERTGHTLL---ERYGMTETGMALSNPLDGERRPGTVGL 262
Score = 58.0 bits (141), Expect = 6e-09
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 35 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 94
+++ + T +++A S R+A LA GL GD VA++ E+V L+L + + G
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 95 VITALINHNLRQNSLLHCINIAGVSAFIYGA 125
+ +N + L + ++ + S + A
Sbjct: 61 GVAVPLNPSYPAAELAYILSDSQPSLLVDPA 91
Score = 33.0 bits (76), Expect = 0.45
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 469 YLGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTG-DTFRWKGENVS 526
+ Y N + +A+ D + F +GD+ V+D+ GY R D + G VS
Sbjct: 296 FSEYWNKPEATAEAFTEDGW------FKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVS 349
Query: 527 TCEVEGVVSNASEYRDCVVYGV 548
E+E + + V GV
Sbjct: 350 ALEIEEALLEHPGVAEVAVIGV 371
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 68.5 bits (168), Expect = 3e-12
Identities = 65/319 (20%), Positives = 112/319 (35%), Gaps = 75/319 (23%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
T +++ +NR AN A G+ GD V L+L + PE V +L K G + +
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL----- 65
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 165
N LL +L + + +L
Sbjct: 66 -NPLLT------------PQDLEHILDDSGAAL--------------------------- 85
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-GFR 224
+ T D ++YTSGTTG PK + + A A ++ G +
Sbjct: 86 -----LVTEA---------DDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQ 131
Query: 225 TKDRFYTPLPLYHTAGGAMCIGQALIF-----GCCVVIRKKFSASNYFSDVCKYKCTVGQ 279
DR ++ L+ G +G +L+F V++ + + +++ TV
Sbjct: 132 PGDRIFSSSKLFFAYG----LGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLF 187
Query: 280 YIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE-G 336
+ + R LL + +VRL G L + + + I +I + G+TE
Sbjct: 188 GVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGI-EILDGIGSTEVL 246
Query: 337 NANIANIDNQ--PGAIGFV 353
+ I+N PG G
Sbjct: 247 HIFISNRPGAARPGTTGRP 265
Score = 43.9 bits (104), Expect = 2e-04
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY N + ++ + D +GD D G+ ++ R D + G+ VS EV
Sbjct: 299 GYWNLPEKTQRTL------RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEV 352
Query: 531 EGVVSNASEYRDCVVYGV 548
E + + V V
Sbjct: 353 EAALGEHPAVAEAAVVAV 370
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 67.7 bits (165), Expect = 5e-12
Identities = 70/279 (25%), Positives = 109/279 (39%), Gaps = 45/279 (16%)
Query: 29 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVC 85
HA +P++ VI + + +Q++ S +A GL+ GD VAL+ +N PE V
Sbjct: 6 HAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVV 65
Query: 86 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 145
LW L ITA INH+L + + +G + A L ++ L +
Sbjct: 66 LWAALRSGLYITA-INHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRL--- 121
Query: 146 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA--- 202
S+ + D S P L+E P + +Y+SGTTG PK
Sbjct: 122 SFGGEIDGFGSFEAALAGAGPRLTEQPCGA-------------VMLYSSGTTGFPKGIQP 168
Query: 203 ------------AVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
+++ R ++ D +Y+ P+YH A C
Sbjct: 169 DLPGRDVDAPGDPIVAIARAFY---------DISESDIYYSSAPIYHAAPLRWC-SMVHA 218
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 289
G VV+ K+F A V +Y+ TV Q + M LL
Sbjct: 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLL 257
Score = 30.4 bits (68), Expect = 2.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 497 GDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GDL +D+ GYLY DR G N+ E E ++ D V GV
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGV 435
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 67.7 bits (166), Expect = 6e-12
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 23/251 (9%)
Query: 32 RSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 91
R P++ + +T T Q+ +R F A GL GD+VAL+ NRPE +
Sbjct: 24 RYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ 83
Query: 92 KLGV-ITALINHNLRQNSL---LHCINIAGVSAFIY-GAELTDAVQEISTSLGSNVKLFS 146
G+ TAL H L SL + + AG+S I A + + + S + +
Sbjct: 84 LAGLRRTAL--HPL--GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLT 139
Query: 147 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVI 205
P D LL+ P+ + + + YT GTTG PK +
Sbjct: 140 LGPVPDGVD-----------LLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMG 188
Query: 206 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 265
++ + + + RF PL H AGGA L+ G V++ KF +
Sbjct: 189 THRSIATMAQIQLAEWEWPADPRFLMCTPLSH-AGGAF-FLPTLLRGGTVIVLAKFDPAE 246
Query: 266 YFSDVCKYKCT 276
+ + + T
Sbjct: 247 VLRAIEEQRIT 257
Score = 37.7 bits (88), Expect = 0.016
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 496 SGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+GD+ D+ G+ Y DR D G NV EVE V++ V GV
Sbjct: 397 TGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGV 449
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 67.5 bits (165), Expect = 7e-12
Identities = 82/408 (20%), Positives = 153/408 (37%), Gaps = 72/408 (17%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
+ I +++HA PNK+ + T + +VAN+ L + K ++A++LEN
Sbjct: 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANW-LNEKESKNKTIAILLEN 59
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA--VQEISTS 137
R EF+ L+ G + G ++ +Q+ L + I+ + T+ + ++
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV-----TERYKLNDLPDE 114
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGT 196
G +++ W + P+ + VQ+ Y+ +TSG+
Sbjct: 115 EGRVIEIDEWKRMIEKYL--------------------PTYAPIENVQNAPFYMGFTSGS 154
Query: 197 TGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT--AGGAMCIGQALIFGCC 254
TG PKA + + + + + +D L H+ GA+ L G
Sbjct: 155 TGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAI---STLYVGQT 211
Query: 255 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 314
V + +KF + + +V + M L E N + +G +
Sbjct: 212 VHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIE----NKMKIISSGAK--- 264
Query: 315 WS-----EFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIP---TIYPISII 366
W + + F A++ EFYGA+E + FV+ L+ P S+
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASE--------------LSFVTALVDEESERRPNSVG 310
Query: 367 R-VDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNE 413
R V I N+ G + GE IG + +P ++GY+
Sbjct: 311 RPFHNVQVR-ICNEAG--EEVQKGE----IGTVYVKSPQF-FMGYIIG 350
Score = 35.9 bits (83), Expect = 0.055
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 450 RCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFE-IGDSAFLSGDLLVMDKWGYL 508
+ G IG + +P ++GY+ A+++ D + + D + D+ G++
Sbjct: 327 EVQKGE-IGTVYVKSPQF-FMGYIIGGVLARELNADGWMTVRDVGYE-------DEEGFI 377
Query: 509 YFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
Y R + + G N+ E+E V+ + VV GV
Sbjct: 378 YIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGV 417
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 66.2 bits (162), Expect = 1e-11
Identities = 70/270 (25%), Positives = 104/270 (38%), Gaps = 58/270 (21%)
Query: 185 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGA 242
D + +TSGTTGLPK + ++ Y LG + AY + R D +T G A
Sbjct: 81 DDPALLYFTSGTTGLPKMVLHTHS--YPLGHLVTGAYWLDLRPDDLHWTI----ADPGWA 134
Query: 243 MCIGQALIF----GCCVVIR--KKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLS 290
+L G V + ++F A + +Y T C R LL
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTT------FCAPPTAYRMLLQ 188
Query: 291 TPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIA---QIGEFYGATEGNANIAN--- 342
D +H +R + G L P E +D +R A I + YG TE +AN
Sbjct: 189 QDLSSYDFSH-LRHVVSAGEPLNP----EVIDWWRAATGLPIRDGYGQTETGLLVANFPG 243
Query: 343 IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSN 402
++ +PG++G P RV I + +G PGE G I V
Sbjct: 244 MEVKPGSMGR---------PAPGYRVA------IIDDEG--NELPPGEEGD-IAVRVKPR 285
Query: 403 PARAYLGYV-NEKDSAKKIVTDVFEIGDSA 431
P + GY+ + + + I D + GD A
Sbjct: 286 PPGLFRGYLKDPEKTEATIRGDWYLTGDRA 315
Score = 58.1 bits (141), Expect = 4e-09
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
WT +++ S+R ANF G+ +GD VA++L PE + LG KLG + L
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 106 QNSLLHCINIAGVSAFIYGAE 126
+ + + AG A + A+
Sbjct: 61 PKDIRYRLERAGARAIVTSAD 81
Score = 34.6 bits (80), Expect = 0.14
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 461 VPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRW 520
V P + GY+ + + + I +L+GD + D+ GY +F R D +
Sbjct: 282 VKPRPPGLFRGYLKDPEKTEAT------IRGDWYLTGDRAIKDEDGYFWFVGRADDVIKS 335
Query: 521 KGENVSTCEVE 531
G + EVE
Sbjct: 336 SGYRIGPFEVE 346
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 66.2 bits (162), Expect = 2e-11
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 25/301 (8%)
Query: 45 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
+T VE S RVA G+++GD V L+L N PEFV +LG S+ G +T N
Sbjct: 50 VYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY 109
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 164
+ +G I + D ++ ++ V + + + +QA
Sbjct: 110 TPAEIAKQAKASGAKLIITQSCYVDKLKGLAE--DDGVTVVTIDDPPEGCLHFSELTQAD 167
Query: 165 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---- 220
L EV SP D + Y+SGTTGLPK +++ H+ L ++A Q
Sbjct: 168 ENELPEVEISP---------DDVVALPYSSGTTGLPKGVMLT-HKG--LVTSVAQQVDGE 215
Query: 221 ---IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
+ F + D LP++H + L G ++I KF + ++K T+
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTI 275
Query: 278 GQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDRFRIAQIGEFYGAT 334
++ + + +P + ++R M +G P ++ F + A +G+ YG T
Sbjct: 276 APFVPPIVLAIAKSPVVEKYDLSSIR-MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMT 334
Query: 335 E 335
E
Sbjct: 335 E 335
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 65.8 bits (161), Expect = 2e-11
Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 42/250 (16%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTE----WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
T+ + + A +P + I + + ++ + R+ A GLK GDSV L
Sbjct: 11 TLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQ 70
Query: 77 LENRPEFV-CLW---LGLSKLGVITALI-------NHNLRQNSLLHCINIAGVSAFIYGA 125
LE +FV W LG G + + N L + + G + A
Sbjct: 71 LERNEDFVTAFWACVLG----GFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDA 126
Query: 126 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 185
L A+ + T G R A+ L S P + +
Sbjct: 127 ALVAALAGLRTRAGL----------------EALRVLAIEELRS---APPDAPLHPARPD 167
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 243
D + + TSG+TG+PK V++ HR G + GF D +PL H G M
Sbjct: 168 DPALLLLTSGSTGVPKCVVLT-HRNILARSAGTVQVN-GFTPDDVSLNWMPLDHVGGIVM 225
Query: 244 CIGQALIFGC 253
+ + GC
Sbjct: 226 LHLRDVYLGC 235
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 63.8 bits (156), Expect = 5e-11
Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 40/251 (15%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLG-GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 249
IYTSG+TG PK ++S HR G +IA + DR LP G + A
Sbjct: 8 IYTSGSTGEPKGVMLS-HRNLTAGARSIAQYLELTEDDRILAVLPFSFDY-GLSQLLTAF 65
Query: 250 IFGCCVVIRKKFS-ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-- 306
G +V+ +F+ + + K + T + LL + ++R +
Sbjct: 66 RVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNA 125
Query: 307 GNGLRPQIWSEFVDRFRIAQIGEFYGATEGNA----NIANIDNQPGAIGFVSRLIP--TI 360
G L + + F A++ YG TE +D +P +IG + IP +
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVEL 182
Query: 361 YPISIIRVDPVTSEPIRNKKGLCTRCEPGEPG--VFIGKIVPSNPARAYLGYVNEKDSAK 418
+ + ++ G RC PGE G V G V GY N+ ++
Sbjct: 183 W--------------VVDEDG--NRCAPGEVGELVHRGANV-------MKGYWNDPEATA 219
Query: 419 KIVTDVFEIGD 429
+ + G+
Sbjct: 220 ERLRPGPLPGE 230
Score = 59.6 bits (145), Expect = 1e-09
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 443 NKKGLCSRCEPGVFIGKIVPSNPARA---YLGYVNEKDSAKKIVTDVFEIGDSAFLSGDL 499
++ G +RC PG +G++V R GY N+ ++ + + G+ +GDL
Sbjct: 186 DEDG--NRCAPGE-VGELV----HRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238
Query: 500 LVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ MD+ GYLYF R D + +G VS E+E V+ + V GV
Sbjct: 239 VRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 63.8 bits (156), Expect = 8e-11
Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 73/239 (30%)
Query: 29 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 88
A P+ V F + T +++ +N++A+ ++ G++ GD VAL LE WL
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLER-----SPWL 55
Query: 89 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 148
++ L V+ A I + + +Q I G+ V L S
Sbjct: 56 YVAILAVLKA-----------------GAAYVPIDPSAPVERLQFIIEDSGATVVLTS-- 96
Query: 149 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 208
SP +Y IYTSG+TG PK VI++
Sbjct: 97 -------------------------SPDDPAY---------VIYTSGSTGKPKGVVITHR 122
Query: 209 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA----MCIGQ---ALIFGCCVVIRKK 260
A +G R DR + + I + L+ G +VI +
Sbjct: 123 NICNFLRAEGAILGIRPGDRVL--------QFASIAFDVSILEIFTTLLAGGTLVIPPE 173
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 63.9 bits (156), Expect = 9e-11
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 25/207 (12%)
Query: 12 ARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGD 71
+RRV + +A R+ A R P+++ ++ + WT ++++A + +A A+G++KGD
Sbjct: 3 SRRV----MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGD 58
Query: 72 SVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA---EL 127
+ + N + F ++ +LG + N + + + +G A I A E
Sbjct: 59 RILVHSRNCNQMFESMFAAF-RLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEH 117
Query: 128 TDAVQEISTSLGSNVKLFS--WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 185
AV+ S L V + D ++ L++ + + + V
Sbjct: 118 AAAVRAASPDLTHVVAIGGARAGLDYEA-------------LVARHLGARVANA-AVDHD 163
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYF 212
D + +TSGTTG PKAAV+++ + F
Sbjct: 164 DPCWFFFTSGTTGRPKAAVLTHGQMAF 190
Score = 30.8 bits (70), Expect = 2.2
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 19/81 (23%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
P VF G Y Y N + +AK D F +GDL +D G+LY
Sbjct: 372 IGPAVFAG----------Y--YNNPEANAKAFR-------DGWFRTGDLGHLDARGFLYI 412
Query: 511 KDRTGDTFRWKGENVSTCEVE 531
R D + G NV E+E
Sbjct: 413 TGRASDMYISGGSNVYPREIE 433
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 63.1 bits (154), Expect = 2e-10
Identities = 56/251 (22%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 9 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFM------FENTEWTAQQVEAYSN 56
L RR A D TI D P+K +T +++ A +
Sbjct: 7 LLPPRRAASIAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVD 66
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 116
RVA G+ +GD V+ L N EF L+L S++G + + R+ L + A
Sbjct: 67 RVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHA 126
Query: 117 GVSAFIYGAELTD-----AVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 171
+ + + L + + D S + ++P +
Sbjct: 127 ESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEAL----LITPAWEQE 182
Query: 172 PTSPPSL-SYRVGVQDKLIYIYTSGTTGLPKAA------VISNHRYY------------F 212
P +P L R G D IYTSGTTG PK +++N Y
Sbjct: 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVIL 242
Query: 213 LGGAIAYQIGF 223
+ +A+Q GF
Sbjct: 243 MASPMAHQTGF 253
Score = 30.8 bits (70), Expect = 1.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGV 533
D F +GDL +D GY+ R+ D GEN+ E+E +
Sbjct: 418 DGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEAL 460
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 62.2 bits (152), Expect = 3e-10
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 179 SYRVGVQDKLIYIYTSGTTGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 236
+ + I+TSG+TG PKA V + NH G A +G D + LPL+
Sbjct: 71 DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARG--SAENLGLTPDDNWLLSLPLF 128
Query: 237 HTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 277
H G + ++L+ G +V+ KF A + + T
Sbjct: 129 HV-SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTH 168
Score = 62.2 bits (152), Expect = 3e-10
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
T Q+++ +++A A G+++GD VAL+ +N EF+ L+L L +LG + +N L
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLP 61
Query: 106 QNSL 109
Q L
Sbjct: 62 QEEL 65
Score = 44.9 bits (107), Expect = 7e-05
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 470 LGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
LGY+ + + D F +GDL +D GYLY R D GEN+ E
Sbjct: 272 LGYLPQGGLTPPL------DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEE 325
Query: 530 VEGVVSNASEYRDCVVYGV 548
+E V+ + V GV
Sbjct: 326 IEAVLLQHPAVEEAAVVGV 344
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 61.8 bits (151), Expect = 4e-10
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 39/213 (18%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFV-----CLWLGLSKLGVITALINHNLRQNS-LL 110
+A A G GD V L+ +FV CL+ G + V R + L
Sbjct: 35 AIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGA--IAVPAPPPRRLGRHLARLA 91
Query: 111 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 170
+ AG A + + + A++ + + + L + D + ++ R
Sbjct: 92 AILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAADWR---------P 142
Query: 171 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFR 224
P P +++ +Q YTSG+TG PK +++ N R AIA G
Sbjct: 143 PPPDPDDIAF---LQ------YTSGSTGAPKGVMVTHGNLLANLR------AIARAFGLD 187
Query: 225 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
D + LPLYH G + Q L G VV+
Sbjct: 188 PDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVL 220
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 60.6 bits (148), Expect = 9e-10
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 32/179 (17%)
Query: 34 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 93
P+ + ++ + T ++ +NR+A A+G+ GD VAL+LE PE V L + K
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 94 GVITALINHNL---RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD 150
G ++ R +L +G + L + + + D
Sbjct: 61 GAAYVPLDPAYPAERLAFMLED---SGARVLLTDESLAPLARAD----QLPLVILEEELD 113
Query: 151 TDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 209
+ + P P L+Y +YTSG+TG PK V HR
Sbjct: 114 AEDAGPPAP------------AVDADDLAY---------VMYTSGSTGRPK-GVAVPHR 150
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 60.3 bits (146), Expect = 1e-09
Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 21/258 (8%)
Query: 22 IADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
IAD+ A R P ++ + + + + + +A GL GD VAL + +
Sbjct: 18 IADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGS 77
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 139
EFV L S+ ++ ++ L AG L DA +
Sbjct: 78 NAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVV-----LIDADGPHDRAEP 132
Query: 140 SNVKLFSWSPDTDS-SSSPVPRSQALSPLLSEV--PTSPPSLSYRVGVQDKLIYIYTSGT 196
+ W P T + P LS L PT S + D +I ++T GT
Sbjct: 133 TT----RWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMI-MFTGGT 187
Query: 197 TGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 254
TGLPK ++ AI Y++ R D +PLYH G + L G
Sbjct: 188 TGLPKMVPWTHANIASSVRAIITGYRLSPR--DATVAVMPLYHGHGLIAALLATLASGGA 245
Query: 255 VVI--RKKFSASNYFSDV 270
V++ R +FSA ++ D+
Sbjct: 246 VLLPARGRFSAHTFWDDI 263
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 60.4 bits (147), Expect = 1e-09
Identities = 63/278 (22%), Positives = 99/278 (35%), Gaps = 46/278 (16%)
Query: 10 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 69
W + D T+ D++ R ++ F T ++ R A A G++
Sbjct: 22 WTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRP 81
Query: 70 GDSVALMLENRPEFVCLWLGLSKLGVITALIN-----HNLRQNSLLHCINIAGV-----S 119
GD VA++L N P+ + + + +LG + N H L H +A V
Sbjct: 82 GDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAP 141
Query: 120 AF-----------IYGAELTDA---VQEISTSL------GSNVKLFSWSPDTDSSSSPVP 159
I + A +Q ++ L + L +P T VP
Sbjct: 142 TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGT------VP 195
Query: 160 RSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI 217
+ S P R D + +YTSGTTG PK A ++ HR F A
Sbjct: 196 WETLVDAAIGGDGSDVSHP----RPTPDDVALILYTSGTTGKPKGAQLT-HRNLFANAAQ 250
Query: 218 --AYQIGFRTKD-RFYTPLPLYHTAGGAMCIGQALIFG 252
A+ G R LP++H G +C+ A+ G
Sbjct: 251 GKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIG 288
Score = 34.6 bits (80), Expect = 0.14
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY N + K D + F +GD++VM++ G++ DR + G NV EV
Sbjct: 430 GYWNRPEETAKSFLDGW------FRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEV 483
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ D V G+
Sbjct: 484 EEVLREHPGVEDAAVVGL 501
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 59.1 bits (144), Expect = 3e-09
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 30 AVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 87
AV P E + +++A S+ +A+ A G+ +G LM+ EF L
Sbjct: 24 AVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83
Query: 88 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 147
L K G + L++ + +L C+ A AFI G + +LF W
Sbjct: 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFI-GIPKAHLAR----------RLFGW 132
Query: 148 SPDTDSSSSPVPRSQALS-PLLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAA 203
+ V L+ + + + + D ++TSG+TG PK
Sbjct: 133 GKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 204 VISNHR 209
V + H
Sbjct: 193 VYT-HG 197
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 57.6 bits (140), Expect = 9e-09
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 20/222 (9%)
Query: 28 EHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
EHA R ++ I +T R+AN + G+K GD VA + N
Sbjct: 3 EHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHR 62
Query: 83 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV 142
+ L+ + +G + +N L + + IN A + ++ I+ L + V
Sbjct: 63 HLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPT-V 121
Query: 143 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK--LIYI-YTSGTTGL 199
K D D + +P A LL E Y D+ + YTSGTTG
Sbjct: 122 KAVVVYDDADMPETSLPNVYAYEELLEEESP-----EYEWPELDENTAAGLCYTSGTTGN 176
Query: 200 PKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPL-PLYH 237
PK V S HR L A+ +G D P+ P++H
Sbjct: 177 PKGVVYS-HRSLVLHTLASALPDSLGLSESDT-VLPVVPMFH 216
Score = 38.7 bits (91), Expect = 0.007
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD+ V+D+ GY+ DR D + GE +S+ E+E + + V GV
Sbjct: 399 FRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGV 453
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 58.2 bits (141), Expect = 9e-09
Identities = 60/317 (18%), Positives = 105/317 (33%), Gaps = 31/317 (9%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+ A + P + +F + ++ +NR+A+ +A G+ V + +E E V
Sbjct: 517 LIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMV 576
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
L + K G ++ Q+ L + ++ +GV + A + L S
Sbjct: 577 VGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGV-RLLLTQSHLLAQLPVPAGLRS---- 631
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
D + + +P EV P +L+Y IYTSG+TG PK
Sbjct: 632 ----LCLDEPADLLCGYSGHNP---EVALDPDNLAY---------VIYTSGSTGQPKGVA 675
Query: 205 ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---F 261
IS+ IA ++ D G G AL G + +
Sbjct: 676 ISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFG-ALASGATLHLLPPDCAR 734
Query: 262 SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR---PQIWSEF 318
A + + + TV + + + LL + + G L+
Sbjct: 735 DAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRAL 794
Query: 319 VDRFRIAQIGEFYGATE 335
R+ YG TE
Sbjct: 795 GPGARLINH---YGPTE 808
Score = 46.7 bits (111), Expect = 4e-05
Identities = 63/323 (19%), Positives = 112/323 (34%), Gaps = 42/323 (13%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+ + A +P V +F E T ++ +NR+A+ +A G+ V + +E E V
Sbjct: 1579 LIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMV 1638
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
L + K G ++ + L + I +G+ + + L + L ++
Sbjct: 1639 VGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL-----PLPDGLRS 1693
Query: 145 FSWSP-----DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+ S S+P V +P +L+Y IYTSG+TG
Sbjct: 1694 LVLDQEDDWLEGYSDSNP------------AVNLAPQNLAY---------VIYTSGSTGR 1732
Query: 200 PKAAVISNHRYYFLGGAIAYQIGFRTKDR--FYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
PK A + A D +T + LI G +VI
Sbjct: 1733 PKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF---WPLINGARLVI 1789
Query: 258 RKKFSAS---NYFSDV-CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRP 312
A + + + T ++ M + LL E+ E R++ G L
Sbjct: 1790 A-PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEV 1848
Query: 313 QIWSEFVDRFRIAQIGEFYGATE 335
+ +++R + YG TE
Sbjct: 1849 EALRPWLERLPDTGLFNLYGPTE 1871
Score = 45.2 bits (107), Expect = 1e-04
Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 34/245 (13%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
+ + + R+P +F + + + ++ +NR+A+ +A G+ V + +E
Sbjct: 3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVE 3153
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
E + L + K G ++ + L + I +GV + A L + + +
Sbjct: 3154 RSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDT 3213
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 198
+ + ++ ++P R +L+Y IYTSG+TG
Sbjct: 3214 ALTLDRLDLNGYSE--NNPSTRVM------------GENLAY---------VIYTSGSTG 3250
Query: 199 LPKAA-----VISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGC 253
PK ++NH + A AY++ + + + G LI G
Sbjct: 3251 KPKGVGVRHGALANHLCWI---AEAYELDANDRVLLFMS---FSFDGAQERFLWTLICGG 3304
Query: 254 CVVIR 258
C+V+R
Sbjct: 3305 CLVVR 3309
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 57.3 bits (138), Expect = 1e-08
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 48/221 (21%)
Query: 50 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 109
++ A +A AQ + +G V ++ +N PE L +KLG I + + NL ++
Sbjct: 46 ELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAI 105
Query: 110 LHCINIAGVSAFIYG----------AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 159
I +A + E ++ I+ + + + S D S
Sbjct: 106 ERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAAS------ 159
Query: 160 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 219
G +D L I+TSGTTG PKA +++N R +F I
Sbjct: 160 ------------LAGNADQ----GSEDPLAMIFTSGTTGEPKAVLLAN-RTFFAVPDILQ 202
Query: 220 QIGFRTKD-----RFYTPLPLYHTAG----------GAMCI 245
+ G Y+PLP H G G +C+
Sbjct: 203 KEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCV 243
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 56.5 bits (137), Expect = 2e-08
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 45 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 104
+ QQ+ + +A A G+K+ +AL L+N ++V L + G++ I H
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 105 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 164
H +N AG I +D + +++L + +
Sbjct: 59 SAQQTQHLLNDAGADLLI-----SDD-PDAASALHTPFATLGEDL---------YIALRP 103
Query: 165 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISN 207
S E+P G K+ YTSG+TG PK +S
Sbjct: 104 SANPVELPA---------GTA-KI--TYTSGSTGQPKGVCLSA 134
Score = 29.9 bits (68), Expect = 3.4
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 458 GKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDT 517
G+I+ LGY+ E + D + +GDL +D+ GYLY R +
Sbjct: 305 GEILVRGSL--MLGYLGEPPAT-----------DDWWATGDLGHLDEEGYLYINGRKKNL 351
Query: 518 FRWK-GENVSTCEVEGVVSNASEYRDCVVYG 547
G NVS VE + A VV+G
Sbjct: 352 IITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 56.4 bits (137), Expect = 2e-08
Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 52/225 (23%)
Query: 45 EW-TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 103
EW + ++VE + + + A GLK GD + + ENRPE++ ++ +
Sbjct: 4 EWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDT 63
Query: 104 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 163
L + ++ + +N EIS VK++S+
Sbjct: 64 LGEEAIEYILNET----------------EISIVFCDAVKVYSFE--------------E 93
Query: 164 LSPL--LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 221
L L ++VP +PP D +YTSGTTG PK ++++ I +
Sbjct: 94 LEELGKKNKVPPTPPKPE------DLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIV 147
Query: 222 G--FRTKDRFYTPLPLYH-----------TAGGAMCIGQALIFGC 253
D + + LPL H GG + G
Sbjct: 148 PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGL 192
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 56.5 bits (137), Expect = 2e-08
Identities = 97/458 (21%), Positives = 157/458 (34%), Gaps = 95/458 (20%)
Query: 10 WAARRVAQKDLTIADIFREHAVRSPNKVIFMF--------ENTEWTAQQVEAYSNRVANF 61
AAR + + ++ A R P+ F WT ++ A R AN
Sbjct: 18 LAARDLPA---STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANL 74
Query: 62 FLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSA 120
+ G+ GD VA +L N PE LW G + I IN L + + AG
Sbjct: 75 LHSLGVGPGDVVAFLLPNLPETHFALWGG--EAAGIANPINPLLEPEQIAELLRAAGAKV 132
Query: 121 FI-YG-----------AELTDAVQEIST--SLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
+ G AE+ A+ E+ T + L ++ L
Sbjct: 133 LVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILD- 191
Query: 167 LLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQ 220
+E+ P + +G D Y +T GTTG+PK A H + A
Sbjct: 192 FDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQ---HTHGNEVANAWLGALL 248
Query: 221 IGFRTKDRFYTPLPLYHTAGGAMCIG-QALIFGCCVVI------RKKFSASNYFSDVCKY 273
+G D + LPL+H + G L G VV+ R +N++ V +Y
Sbjct: 249 LGLGPGDTVFCGLPLFHV-NALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERY 307
Query: 274 KCTVGQYIGEMCRYLLSTP-------EKPEDKAHNV---RLMFGNG--LRPQIWSEFVDR 321
+ +L P + P D H++ R L +++ F
Sbjct: 308 RIN----------FLSGVPTVYAALLQVPVD-GHDISSLRYALCGAAPLPVEVFRRFEAA 356
Query: 322 FRIAQIGEFYGATEGNA----NIANIDNQPGAIGFVSRLIPTIYP-ISIIRVDPVTSEPI 376
+ +I E YG TE N + + + G++G + Y + ++ +D
Sbjct: 357 TGV-RIVEGYGLTEATCVSSVNPPDGERRIGSVG-----LRLPYQRVRVVILDD------ 404
Query: 377 RNKKGLCTR-CEPGEPGVFIGKIVPSNPARAYLGYVNE 413
G R C E GV + + P + GY+
Sbjct: 405 ---AGRYLRDCAVDEVGV----LCIAGPN-VFSGYLEA 434
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 55.4 bits (133), Expect = 5e-08
Identities = 99/439 (22%), Positives = 181/439 (41%), Gaps = 55/439 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
T+ D+ + A + F + T ++EA + A L G K SVAL L N
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNT 81
Query: 81 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---YGAELTDAVQEISTS 137
P+ + G K G ++ + +L H ++ +G I A L A++ +
Sbjct: 82 PDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKG 141
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--------SPPSLSYRVGVQDKLI 189
L + + D + V QA P + T + P+ V D +
Sbjct: 142 LLDRLIVCE-----DDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVAL 196
Query: 190 YIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQI-GFRTK------DRFYTPLPLYHTAGG 241
YT GTTGLPK A++++ L A++ Y + G ++ +R LPL+H
Sbjct: 197 LQYTGGTTGLPKGAMLTHGN---LTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
Query: 242 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN 301
+ + ++L G + + ++F + F D+ + + TV + M L + P E + +
Sbjct: 254 TVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL-EKRDLS 312
Query: 302 VRLMFGNGLRP---QIWSEFVDRFRIAQIGEFYGATE----GNANIANIDNQPGAIGFVS 354
G+G P ++ + F +R ++ +G TE G + ++PG+IG
Sbjct: 313 SLATIGSGGAPLPVEV-ANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGL-- 369
Query: 355 RLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEK 414
++P I + ++ +D ++ + PGE G +I N R Y + +
Sbjct: 370 -MLPGI-ELDVVSLDD-PTKVL----------PPGEVGEL--RIRGPNVTRGY--WNRPE 412
Query: 415 DSAKKIVTDVFEIGDSAFL 433
+SA+ V D F GD ++
Sbjct: 413 ESAEAFVGDRFLTGDIGYM 431
Score = 32.6 bits (74), Expect = 0.57
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 471 GYVNE-KDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
GY N ++SA+ V D FL+GD+ MD GY + DR D G NV
Sbjct: 406 GYWNRPEESAEAFVGD-------RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQM 458
Query: 530 VEGVVSNASEYRDCVVYGV 548
+E + ++ +V G+
Sbjct: 459 IEQAIYEHPGVQEVIVIGI 477
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 54.5 bits (132), Expect = 9e-08
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 33/235 (14%)
Query: 44 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 103
E + ++ + R+A G+K GD VA L N PE V L + +G I + + +
Sbjct: 85 REISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 104 LRQNSLLHCIN------IAGVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS 154
++L + V ++Y + + + EI L S ++ P S
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS-LEAVVVVPYLSSD 203
Query: 155 SSPVPRS-QALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 212
+ P AL+ L S L + R+ L +Y+SGTTGLPK V H
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV---HGA-- 258
Query: 213 LGGAIAYQI-------GFRTKDRFYTPLPLYHTAGGAMC---IGQALIFGCCVVI 257
GG + + R DR + Y+T G M + L+ G +V+
Sbjct: 259 -GGTLLQHLKEHGLHCDLRPGDRLF-----YYTTTGWMMWNWLVSGLLSGATLVL 307
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 54.5 bits (131), Expect = 1e-07
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 18/218 (8%)
Query: 66 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYG 124
G+++GD V L+L N F ++L + LG I +N + +SL + S +
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS---SSLGEIKKRVVDCSVGLAF 144
Query: 125 AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 184
+ V+++S LG V + D DS P+ L + P +
Sbjct: 145 TS-PENVEKLS-PLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPV-----IKQ 197
Query: 185 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI-----AYQIGFRTKDRFY-TPLPLYHT 238
D +Y+SGTTG K V++ HR + A Q + D Y LP++H
Sbjct: 198 DDVAAIMYSSGTTGASKGVVLT-HRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHI 256
Query: 239 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 276
G ++ + L G +V+ ++F AS+ + ++K T
Sbjct: 257 YGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVT 294
Score = 34.4 bits (79), Expect = 0.15
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY+N T D +GD+ D+ GYLY DR + ++KG ++ ++
Sbjct: 414 GYLNNPK-----ATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADL 468
Query: 531 EGVVSNASEYRDCVVYGV 548
E V+ + E D V V
Sbjct: 469 EAVLISHPEIIDAAVTAV 486
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 54.8 bits (132), Expect = 1e-07
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 25/217 (11%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
D T+ +F A R+P F + +++A +NR+A +G+ V L LE
Sbjct: 2187 DQTLHGLFAAQAARTPQAPALTFAGQTLSYAELDARANRLARALRERGVGPQVRVGLALE 2246
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
E V L + K G ++ L + I +G+ + L +A+ E+ +
Sbjct: 2247 RSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELPAGV 2306
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP-PSLSYRVGVQDKLIYIYTSGTT 197
W + D + L+ +P P LS Q + IYTSG+T
Sbjct: 2307 A------RWCLEDD------------AAALAAYSDAPLPFLS---LPQHQAYLIYTSGST 2345
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKD---RFYT 231
G PK V+S+ A+ + G R D FY+
Sbjct: 2346 GKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYS 2382
Score = 39.8 bits (93), Expect = 0.005
Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 31/197 (15%)
Query: 10 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 69
W A + ++ E A ++P ++ +++ ++ A +NR+A++ +G+
Sbjct: 1121 WGQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGP 1180
Query: 70 GDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD 129
VA+ E P+ + L + K G ++ + L + + +GV + + L +
Sbjct: 1181 DVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLE 1240
Query: 130 AVQE---ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQD 186
+ + +S ++ L SW P+ P L D
Sbjct: 1241 RLPQAEGVSAIALDSLHLDSW------------------------PSQAPGLHLH---GD 1273
Query: 187 KLIY-IYTSGTTGLPKA 202
L Y IYTSG+TG PK
Sbjct: 1274 NLAYVIYTSGSTGQPKG 1290
Score = 39.4 bits (92), Expect = 0.006
Identities = 64/269 (23%), Positives = 99/269 (36%), Gaps = 52/269 (19%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSN-----RVANFFLAQGLKKGDSVA 74
LT+ + A ++P+++ F + V +Y + R L GD
Sbjct: 9 LTLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFGDRAV 68
Query: 75 LMLENRPEFVCLWLGLSKLGVIT--ALINHNLR---QNSLLHCINIAGVSAFIYGAELTD 129
L+ + P++V + G GVI A + R Q LL I A + A+L D
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRD 128
Query: 130 AVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR---VGVQD 186
++ ++ +N +P L V T P+L+ +Q
Sbjct: 129 SLLQMEELAAAN-----------------------APELLCVDTLDPALAEAWQEPALQP 165
Query: 187 KLIYI--YTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGA 242
I YTSG+T LPK +S+ I + I D + LPLYH G
Sbjct: 166 DDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG-- 223
Query: 243 MCIGQAL--IFGC--CVVIRKKFSASNYF 267
IG L IF CV++ + YF
Sbjct: 224 -LIGGLLQPIFSGVPCVLM-----SPAYF 246
Score = 34.4 bits (79), Expect = 0.22
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 20/188 (10%)
Query: 23 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
+F P ++ + +W+ ++ +NR+ + A G+ VAL+ E +
Sbjct: 3723 VRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLD 3782
Query: 83 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV 142
+ + +G K G ++ L L I ++ + A + + + LG
Sbjct: 3783 LLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN 3842
Query: 143 --KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLP 200
+L W + + S P +L+Y IYTSG+TGLP
Sbjct: 3843 RPRLLVWE-EVQAGEVASHNPGIYS--------GPDNLAY---------VIYTSGSTGLP 3884
Query: 201 KAAVISNH 208
K ++
Sbjct: 3885 KGVMVEQR 3892
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 53.6 bits (129), Expect = 1e-07
Identities = 83/407 (20%), Positives = 140/407 (34%), Gaps = 105/407 (25%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
+ ++ S RVAN G+K GD VA +L PE V L ++G I +
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPL------ 55
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFSWSPDTDSSSSPVPRSQALS 165
+AF + I LG S K+ +
Sbjct: 56 -----------FTAF--------GPKAIEYRLGHSGAKVVVTNAA--------------- 81
Query: 166 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK------AAVISNHRYYFLGGAIAY 219
++ + Y G TTGLPK A+ + + Y + Y
Sbjct: 82 -NRGKLDDDLFAQMYTSG------------TTGLPKGVPVPLNALAAFYAY------MRY 122
Query: 220 QIGFRTKDRFY-TPLP-----LYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKY 273
I R D F+ P LY+ G + +G +F + F+A N + + +
Sbjct: 123 AIDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVF-----LEGGFTAENTYDVLERL 177
Query: 274 KCTVGQYIGEMCRYLLSTP-EKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEF 330
T R L++ + +R+ G L P++ + I +
Sbjct: 178 GVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEV-VRWFQANLGVTIHDH 236
Query: 331 YGATE-----GNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTR 385
YG TE GN + + + G++G +P Y I+++ D +P+
Sbjct: 237 YGQTETGMPVGNHHALAHEVRAGSMGLP---LPG-YRIAVLDDD---GQPL--------- 280
Query: 386 CEPGEPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSA 431
GEPG + V S+P + GY + + +A+ I + GD
Sbjct: 281 -ADGEPGQ-LAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLV 325
Score = 31.6 bits (72), Expect = 1.1
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 452 EPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
EPG + V S+P + GY + + +A+ I +++GDL+ D+ GY +F
Sbjct: 284 EPGQ-LAIDVASSPLLWFSGYWDDPEKTAELIA-------GRWYVTGDLVERDEDGYFWF 335
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
R D G + +VE + + V GV
Sbjct: 336 IGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGV 373
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 54.1 bits (130), Expect = 1e-07
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 36/242 (14%)
Query: 26 FREHAVR---SPNKVIFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
+ E+ +R + ++++ E E T ++ +A A G++ GD V+ L N
Sbjct: 89 YAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN------IAGVSAFIYGAE---LTDA 130
P+ V L + +G I + + + +L + V + Y + D
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 131 VQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 188
V E+ L + V + ++ + + + L + + ++ L
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFE-QLPFDHPL 267
Query: 189 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-------GFRTKDRFYTPLPLYHTAGG 241
+++SGTTGLPK V S GG + + DR Y+T G
Sbjct: 268 WILFSSGTTGLPKCIVHSA------GGTLVQHLKEHGLHCDLGPGDRL-----FYYTTTG 316
Query: 242 AM 243
M
Sbjct: 317 WM 318
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 53.5 bits (129), Expect = 2e-07
Identities = 77/339 (22%), Positives = 127/339 (37%), Gaps = 60/339 (17%)
Query: 51 VEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLL 110
+ + R A A G++ GD VAL++ N F +LG +N + + +
Sbjct: 17 LAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76
Query: 111 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD---------TDSSSSPVPRS 161
+ + +G I A+L + L + V + S + + +P +
Sbjct: 77 YILEDSGARVLIAHADLLHGLASA---LPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA 133
Query: 162 QALSPLLS-EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK-----------AAVISNHR 209
L+ + P P + + IYTSGTTG PK AA R
Sbjct: 134 IDWEGWLAQQEPYDGPPVPQPQSM------IYTSGTTGHPKGVRRAAPTPEQAAAAEQMR 187
Query: 210 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 269
A+ Y G + R PLYH+A A + +A G +V++ +F
Sbjct: 188 ------ALIY--GLKPGIRALLTGPLYHSAPNAYGL-RAGRLGGVLVLQPRFDPEELLQL 238
Query: 270 VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFG-NGLRPQIWSEF-----VDRFR 323
+ +++ T + M LL PE+ VR + + LR I + V R
Sbjct: 239 IERHRITHMHMVPTMFIRLLKLPEE-------VRAKYDVSSLRHVIHAAAPCPADVKRAM 291
Query: 324 IAQ----IGEFYGATE-GNANIANID---NQPGAIGFVS 354
I I E+YG+TE G A + + PG +G +
Sbjct: 292 IEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAA 330
Score = 41.6 bits (98), Expect = 8e-04
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 457 IGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
IG+I Y N+ + +I F SGD+ +D GYL+ DR D
Sbjct: 350 IGEIYSRIAGNPDFTYHNKPEKRAEIDRGGF------ITSGDVGYLDADGYLFLCDRKRD 403
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
G N+ E+E V+ DC V+G+
Sbjct: 404 MVISGGVNIYPAEIEAVLHAVPGVHDCAVFGI 435
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 53.5 bits (128), Expect = 2e-07
Identities = 99/439 (22%), Positives = 170/439 (38%), Gaps = 58/439 (13%)
Query: 28 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 87
+ A R P K F + T R AN+ G++KGD VA+ML N P+ V +
Sbjct: 32 QMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGY 91
Query: 88 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 147
G G I N + L + ++ +G + D V T++ S K+
Sbjct: 92 YGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL----CLDLVFPRVTNVQSATKIEHV 147
Query: 148 SPDTDSSSSPVPRS-------QALSPLLSEVPTSPP-----SLSYRVGV---------QD 186
+ P P++ + S L+ +V S S+ V D
Sbjct: 148 IVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEND 207
Query: 187 KLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR---FYTPLPLYHTAGGAM 243
+ YT GTTG PK +++ H+ + Q + K+ LP +H G
Sbjct: 208 LALLQYTGGTTGFPKGVMLT-HKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTA 266
Query: 244 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 303
+ +++ G +V+ KF F + K+K T+ + LL++P E ++R
Sbjct: 267 VMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIR 326
Query: 304 -LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGN----ANIANIDNQPGAIGFVSRLIP 358
+ G+ P E + ++ E YG TE + +N PG+IG +P
Sbjct: 327 ACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIG-----VP 381
Query: 359 TIYPISIIRVDPV-TSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSA 417
+P + + + T E + PGE IG+IV P + GY N+ +
Sbjct: 382 --WPDTEAMIMSLETGEALP----------PGE----IGEIVVKGP-QIMKGYWNKPEET 424
Query: 418 KKIVTDVF-EIGDSAFLSD 435
++ D + GD ++ +
Sbjct: 425 AAVLQDGWLHTGDVGYMDE 443
Score = 41.6 bits (97), Expect = 0.001
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 457 IGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
IG+IV P + GY N+ + ++ D + +GD+ MD+ G+ Y KDR D
Sbjct: 403 IGEIVVKGP-QIMKGYWNKPEETAAVLQDGW------LHTGDVGYMDEDGFFYVKDRKKD 455
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
G NV EVE V+ + ++ V GV
Sbjct: 456 MIVASGFNVYPREVEEVLYEHEKVQEVVTIGV 487
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 53.1 bits (128), Expect = 2e-07
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 55 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 114
+R+A +G++KGD VAL ++N P+FV + + + G + +N R+ L H +N
Sbjct: 11 VDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILN 70
Query: 115 IAGVSAFIYGAELTD 129
+G I G+EL D
Sbjct: 71 DSGARVLIVGSELDD 85
Score = 52.3 bits (126), Expect = 3e-07
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 156 SPVPRSQALSPLLSEVPTSPPSLSYRVGV-----QDKLIYIYTSGTTGLPKAAVISNHR- 209
+P+ R L +L++ RV + D + YTSGTTGLPK + + HR
Sbjct: 57 NPMNREAELEHILNDSGA-------RVLIVGSELDDVAVIPYTSGTTGLPKGCMHT-HRT 108
Query: 210 --YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 267
A G LPL+H AG + + G +V+ ++
Sbjct: 109 VLATAAASAAWS--GLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAA 166
Query: 268 SDVCKYKCTVGQYIGEMCRYLLSTPE 293
+ +Y+ T I M LL+ P
Sbjct: 167 RAIERYRVTHWTNIVTMVVDLLAHPR 192
Score = 40.0 bits (94), Expect = 0.002
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 458 GKIVPSNPARAYLGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 516
G+IV P + GY N + +A+ + G F +GDL +D+ GY +F DR
Sbjct: 279 GEIVVRGPQ-VFKGYWNRPEATAESFIELD---GKRFFRTGDLGYIDEEGYFFFLDRVKR 334
Query: 517 TFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
G V EVE ++ + V G
Sbjct: 335 MINVSGYKVWPAEVEALLYQHPAVLEVCVIGR 366
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 52.7 bits (127), Expect = 3e-07
Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENT----EW---TAQQVEAYSNRVANFFLAQGLKKGD 71
+I + + A +P++ ++ + +W T + + + +A L GL G
Sbjct: 48 PRSIPHLLAKWAAEAPDRP-WLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGR 106
Query: 72 SVALMLENRPEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY- 123
V ++ N E + L + GV A L++H+ + L H ++ ++
Sbjct: 107 PVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAK--LKHLFDLVK-PRVVFA 163
Query: 124 --GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 181
GA A+ + +V + + + +S A +P + V + +++
Sbjct: 164 QSGAPFARALAALDLL---DVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPD 220
Query: 182 -VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP------LP 234
V Y++TSG+TG+PK AVI+ R + IA Q R ++ P +P
Sbjct: 221 TVAK-----YLFTSGSTGMPK-AVINTQR--MMCANIAMQEQLRPREPDPPPPVSLDWMP 272
Query: 235 LYHTAGGAMCIGQALIFG 252
HT GG L G
Sbjct: 273 WNHTMGGNANFNGLLWGG 290
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the
two-step activation of medium chain fatty acids
(containing 4-12 carbons). The carboxylate substrate
first reacts with ATP to form an acyl-adenylate
intermediate, which then reacts with CoA to produce an
acyl-CoA ester. MACS enzymes are localized to
mitochondria.
Length = 433
Score = 52.0 bits (125), Expect = 4e-07
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW---LGLSKLGVITA 98
++ Q+ SNRVANF G+++GD V LML N PE LW L KLG +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPE---LWEAMLAAIKLGAVVI 53
Score = 50.1 bits (120), Expect = 2e-06
Identities = 64/286 (22%), Positives = 95/286 (33%), Gaps = 86/286 (30%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKD----------------R 228
D ++ +TSGTTGLPK V+ H Y +G + Y IG + D
Sbjct: 85 DPILLYFTSGTTGLPK-LVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISSPGWAKHAWSS 143
Query: 229 FYTPLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGEMC- 285
F+ P G V +F A Y + K+ T C
Sbjct: 144 FFAP----------------WNAGATVFGINYPRFDARRYLGALEKFGVT------TFCA 181
Query: 286 -----RYLLSTPEKPEDKAHNVRLM----FGNGLRPQIWSEFVDRFRIA---QIGEFYGA 333
R + ++VRL G L P E ++R + A I + YG
Sbjct: 182 PPTVWRMFIQQD----LAQYDVRLREAVSAGEPLNP----EVIERVKKAWGLTIRDGYGQ 233
Query: 334 TEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGV 393
TE A I N Q G + R +P ++ +D E E V
Sbjct: 234 TETTAMIGNSPGQKVKPGSMGRPLP---GYRVVLLDD----------------EGKEIPV 274
Query: 394 FIGKI---VPSNPARAYLGYVNEKDS-AKKIVTDVFEIGDSAFLSD 435
G+I + P LGY+ + + A + GD A+ +
Sbjct: 275 TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDE 320
Score = 36.6 bits (85), Expect = 0.033
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 452 EPGVFIGKI---VPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYL 508
E V G+I + P LGY+ + + + + +GD D+ GYL
Sbjct: 271 EIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGY------YRTGDKAYRDEDGYL 324
Query: 509 YFKDRTGDTFRWKGENVSTCEVEGV 533
+F R D F+ +S EVE
Sbjct: 325 WFVGRADDVFKSSDYRISPFEVESA 349
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 52.1 bits (125), Expect = 5e-07
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 24/179 (13%)
Query: 28 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 87
A P + + ++ E T QQ++ S+R+A F + L K + + P + +
Sbjct: 8 AFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAF 67
Query: 88 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 147
LG K G ++ ++ + I AG I+ AEL+
Sbjct: 68 LGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELS------------------- 108
Query: 148 SPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 206
D+ + + AL + P S + V D IYTSG+TG PK IS
Sbjct: 109 ---IDAVGTQIITLSALEQAETS--GGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQIS 162
Score = 29.0 bits (65), Expect = 7.2
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 28/162 (17%)
Query: 283 EMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIA 341
+MC LL E+ H +F G L + ++RF A I YG TE +
Sbjct: 244 DMC--LLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVT 301
Query: 342 NIDNQPGAIGFVSRLIPTIY---PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKI 398
++ +++ I Y PI + P + I +++G GE G+I
Sbjct: 302 SVK--------ITQEILDQYPRLPIGFAK--PDMNLFIMDEEG--EPLPEGEK----GEI 345
Query: 399 VPSNPARAYLGYVNEKDSAKKIVTDV-----FEIGDSAFLSD 435
V P+ + GY+N + + + GD+ ++D
Sbjct: 346 VIVGPSVS-KGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITD 386
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 51.9 bits (125), Expect = 5e-07
Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 63 LAQGLKKGDSVALMLENRPEFV-----CLWLGL--SKLGVITALINHNLRQNSLLHCINI 115
LA GLK GD VAL+ E +FV C + GL L + L +
Sbjct: 67 LALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS 126
Query: 116 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 175
A +A I EL V E + + + S + P AL +P
Sbjct: 127 AQPAAIITPDELLPWVNEATHGNPL-LHVLSH---AWFKALPEADV-ALPRP------TP 175
Query: 176 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLP 234
++Y +Q Y+SG+T P+ +I++ AI++ + R DR + LP
Sbjct: 176 DDIAY---LQ------YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLP 226
Query: 235 LYHTAG 240
YH G
Sbjct: 227 FYHDMG 232
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 51.5 bits (124), Expect = 5e-07
Identities = 87/417 (20%), Positives = 143/417 (34%), Gaps = 106/417 (25%)
Query: 47 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVI--------- 96
T ++++ +NR+A A G+ GD VA++LE E V L + K G
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 97 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 156
+ L AG + + L + + + L D+ +
Sbjct: 61 AERLAFILED---------AGARLLLTDSALASRLAGLVLPVILLDPLELA-ALDDAPAP 110
Query: 157 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR--YYFLG 214
P P + P+ P L+Y IYTSG+TG PK V++ HR L
Sbjct: 111 PPPDA----------PSGPDDLAY---------VIYTSGSTGRPKGVVVT-HRSLVNLLA 150
Query: 215 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ---ALIFGCCVVI----RKKFSASNYF 267
G DR + + + + AL+ G +V+ ++ A+
Sbjct: 151 WLARR-YGLDPDDRV----LQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLA 205
Query: 268 SDVCKYKCTVGQYIGEMCRYLLSTP--------EKPEDKAHNVRLMFGNG--LRPQIWSE 317
+ + ++ TV L TP P A +RL+ G L P +
Sbjct: 206 ALIAEHPVTV----------LNLTPSLLALLAAALPPALAS-LRLVILGGEALTPALVDR 254
Query: 318 FVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPI- 376
+ R A++ YG TE + + T + + PI
Sbjct: 255 WRARGPGARLINLYGPTE--TTVWS----------------TATLVDPDDAPRESPVPIG 296
Query: 377 RNKKGLCTRC-------EPGEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVTDVF 425
R TR P GV +G++ P A GY+N + +A++ V D F
Sbjct: 297 RPLAN--TRLYVLDDDLRPVPVGV-VGELYIGGPGVA-RGYLNRPELTAERFVPDPF 349
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 52.1 bits (126), Expect = 6e-07
Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 54/214 (25%)
Query: 26 FREHAVR--SPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
+ E+ +R ++ +F E + ++ +A A G+ GD VA L
Sbjct: 88 YAENLLRHRRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLP 147
Query: 79 NRPEFVCLWLGLSKLGVI----------------------TALINHNLRQNSLLHCINIA 116
N PE V L + LG I LI
Sbjct: 148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLI---------------- 191
Query: 117 GVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS--SSPVPRSQALSPLLSEV 171
V + YG + V E+ +L S ++ P + ++ +P + L+
Sbjct: 192 AVDGYRYGGKAFDRRAKVAELRAALPS-LEHVVVVPYLGPAAAAAALPGALLWEDFLAPA 250
Query: 172 PTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV 204
+ V L +I Y+SGTTGLPK V
Sbjct: 251 EAAELEFE-PVPFDHPL-WILYSSGTTGLPKCIV 282
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 51.8 bits (125), Expect = 6e-07
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL- 104
T ++ +N +A A G+ GD VA+++ E + LG+ G I+ +
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 105 --RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 162
R+ ++L AG A + L + +
Sbjct: 73 AERRAAILA---RAGARAVLTDPGLAQPEEAPDLLV------------------------ 105
Query: 163 ALSPLLSEVPTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 209
P+ D L Y I+TSG+TG PK +I+ HR
Sbjct: 106 ---VADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT-HR 149
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 51.7 bits (124), Expect = 6e-07
Identities = 67/310 (21%), Positives = 114/310 (36%), Gaps = 34/310 (10%)
Query: 51 VEAYSNRV---ANFF-----LAQGL-----KKGDSVALMLENRPEFVCLWLGLSKLGVIT 97
V NR F LA GL + GD VA+ N ++ L ++ G I
Sbjct: 25 VTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84
Query: 98 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSP 157
A +N+ + + + + +E+ ++ + ++ SSS
Sbjct: 85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFL-ESPSSSVF 143
Query: 158 VPRSQALSPLLSEVPT-SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA 216
+ + L+ + + L Y D ++ +TSGTTG PK IS H A
Sbjct: 144 IFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTIS-HS------A 196
Query: 217 IAYQ-------IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 269
+ Q +G+ D + PL H G + + L+ G C V+ KF A
Sbjct: 197 LIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAM-LMVGACHVLLPKFDAKAALQA 255
Query: 270 VCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--HNVRLMF--GNGLRPQIWSEFVDRFRIA 325
+ ++ T + M L+S K +VR + G L ++ + F A
Sbjct: 256 IKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNA 315
Query: 326 QIGEFYGATE 335
++ YG TE
Sbjct: 316 KLFSAYGMTE 325
Score = 32.5 bits (74), Expect = 0.59
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 496 SGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+GD+ +DK G L+ R+ D + GENV EVE V+S VV GV
Sbjct: 418 TGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGV 470
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 52.0 bits (125), Expect = 6e-07
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 56 NRVANF---FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC 112
RV NF +A G K + VA+ + R E++ G + + I +L + +L H
Sbjct: 114 ERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHS 173
Query: 113 INIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPL--- 167
+N V+ I ++ + +IS+ L + V SS + +S
Sbjct: 174 LNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEV 233
Query: 168 --LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 225
L + P L + + +YTSG+TGLPK ++++ G +A G T
Sbjct: 234 EKLGKENPVDPDLPSPNDIA---VIMYTSGSTGLPKGVMMTH------GNIVATVAGVMT 284
Query: 226 -------KDRFYTPLPLYH-----------TAGGAMCIGQAL 249
D + LPL H G A+ G L
Sbjct: 285 VVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPL 326
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 51.0 bits (122), Expect = 1e-06
Identities = 87/380 (22%), Positives = 150/380 (39%), Gaps = 69/380 (18%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLEN 79
T+A++F + ++ + T ++ + + A + L + LKKGD VALM+ N
Sbjct: 26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPN 85
Query: 80 RPEFVCLWLGLSKLGVITA---LINHN--LRQNSLLHCINIAGVSAFIYGAELTDAVQE- 133
CL ++ GV+ A ++N N L H + +G S + VQ+
Sbjct: 86 -----CLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQV 140
Query: 134 ---------ISTSLGS-----NVKLFSWS--------PDTDSSSSPVPRSQALSPLLSEV 171
I+T LG L ++ P+ + + + +AL+ L
Sbjct: 141 IADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGA-IRFREALA--LGRK 197
Query: 172 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---------YYFLGGAIAYQIG 222
+ P ++ D YT GTTG+ K A+++ HR + +L G + G
Sbjct: 198 HSMPT---LQIEPDDIAFLQYTGGTTGVAKGAMLT-HRNLVANMQQAHQWLAGTGKLEEG 253
Query: 223 FRTKDRFYTPLPLYH----TAGGA--MCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 276
+ T LPLYH TA G M IG GC +I + ++ K + T
Sbjct: 254 ---CEVVITALPLYHIFALTANGLVFMKIG-----GCNHLISNPRDMPGFVKELKKTRFT 305
Query: 277 VGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ-IWSEFVDRFRIAQIGEFYGATE 335
+ + LL+TP + ++++ G G+ Q +E + + E YG TE
Sbjct: 306 AFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTE 365
Query: 336 GNA----NIANIDNQPGAIG 351
+ N + G+IG
Sbjct: 366 TSPAACINPLTLKEYNGSIG 385
Score = 34.5 bits (79), Expect = 0.17
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVS 535
D +GD+ MD+ G++Y DR D G NV E+E V++
Sbjct: 436 DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA 480
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a
thioester bond to the enzyme-bound cofactor
phosphopantetheine of a peptidyl carrier protein
domain. NRPSs are large multifunctional enzymes which
synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic
acid independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 445
Score = 50.1 bits (121), Expect = 2e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 34 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 93
P+ V +F + T +++ +NR+A++ A+G+ GD VA+ LE PE V L + K
Sbjct: 1 PDAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 94 G 94
G
Sbjct: 61 G 61
Score = 38.2 bits (90), Expect = 0.011
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 191 IYTSGTTGLPKAAVISNHR 209
IYTSG+TG PK ++ HR
Sbjct: 99 IYTSGSTGRPKGVMVE-HR 116
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 42 ENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
+ +W+ +++ + S + AN A GL++GD VA++L PE+ + + + G++
Sbjct: 38 DEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPG 97
Query: 101 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVP 159
L +L+ + + + EL AV I++ S KL S
Sbjct: 98 TIQLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLV---------SEHS 148
Query: 160 RSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI 217
R L+ LL E S + Q+ + +TSGTTG PK A H + LG
Sbjct: 149 RDGWLNFKELLKE--ASTEHTCVKTKSQEPMAIYFTSGTTGFPKMA---EHSHSSLG--- 200
Query: 218 AYQIGFRTKDRFYTPL 233
+G + R++ L
Sbjct: 201 ---LGLKVNGRYWLDL 213
Score = 32.1 bits (73), Expect = 0.89
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 459 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 518
++ P+ P + YV+ + T GD +++GD +MD+ GY +F R D
Sbjct: 375 RVKPTRPFCLFSCYVDNPEK-----TAATIRGD-FYITGDRGIMDEDGYFWFVGRADDVI 428
Query: 519 RWKGENVSTCEVE 531
G + EVE
Sbjct: 429 NSSGYRIGPFEVE 441
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 50.1 bits (119), Expect = 2e-06
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 13/238 (5%)
Query: 41 FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 100
E T +V + R+ A G+ GD VA + N + + + +G +
Sbjct: 20 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79
Query: 101 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPR 160
N L + + +N A ++ L V+ V
Sbjct: 80 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA-IRGELKTV--------QHFVVMDEKA 130
Query: 161 SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY- 219
+ + + V + YT+GTTGLPK V S+ A +
Sbjct: 131 PEGYLAYEEALGEEADPVR--VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 188
Query: 220 -QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 276
KD +P++H + L+ V+ + ++ T
Sbjct: 189 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT 246
Score = 38.6 bits (89), Expect = 0.007
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY +++ T D F +GD+ V D+ GY+ KDR D + GE +S+ ++
Sbjct: 373 GYYGNEEA-----TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 427
Query: 531 EGVVSNASEYRDCVVYG 547
E + + ++ V
Sbjct: 428 ENALMGHPKVKEAAVVA 444
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 50.3 bits (120), Expect = 2e-06
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 17/252 (6%)
Query: 9 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSN 56
L A RR A K D TI D F P+K ++ ++++ +
Sbjct: 5 LLAPRRAASKAAGLWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVD 64
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 116
R+A G+ +GD V+ L NR EF L+L +++G + + R+ L +N A
Sbjct: 65 RIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHA 124
Query: 117 GVSAFIYGAELTDAVQE-ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 175
F+ + ++ L S + D ++P + P +
Sbjct: 125 DSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAA 184
Query: 176 PSLS-YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLP 234
L+ R D IYTSGTTG PK + + + + A ++ D P
Sbjct: 185 AILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP 244
Query: 235 LYHTAG---GAM 243
+ H G G M
Sbjct: 245 MAHQTGFMYGLM 256
Score = 30.7 bits (69), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVE 531
+ F +GDL D GY+ R+ D GEN+ E+E
Sbjct: 416 EGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIE 456
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP
to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is
the first step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 50.0 bits (120), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 45 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 96
WT ++ NR+A+ A GL KGD V + + PE V L ++K+G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Score = 34.9 bits (81), Expect = 0.10
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGA--IAYQIGFRTKDRFYTPLPLYHTAGGAM 243
D + IYTSGTTG PK V + H + + A I + + DR + G +
Sbjct: 101 DPAMIIYTSGTTGKPKGTVHT-HAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWL 159
Query: 244 CIGQALIFGCCVV 256
+G L+ G +V
Sbjct: 160 VLG-GLLLGATIV 171
Score = 34.6 bits (80), Expect = 0.15
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 497 GDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
GD ++D+ GY Y R+ DT + G+ V E+E V+++ + GV
Sbjct: 340 GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGV 391
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 50.3 bits (121), Expect = 2e-06
Identities = 66/282 (23%), Positives = 104/282 (36%), Gaps = 75/282 (26%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 247
I++SG+ G PK ++S+H + I+ R D + LP +H+
Sbjct: 788 IFSSGSEGEPKGVMLSHHN---ILSNIEQISDVFNLRNDDVILSSLPFFHS--------- 835
Query: 248 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCR-----YLLSTPE--------- 293
FG V + V T I ++ LL TP
Sbjct: 836 ---FGLTVTLW--LPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNK 890
Query: 294 --KPEDKAHNVRL-MFG-NGLRPQIWSEFVDRFRIAQIGEFYGATE---------GNANI 340
P A ++RL + G L+P++ F ++F I +I E YGATE +
Sbjct: 891 KLHPLMFA-SLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGATETSPVASVNLPDVLA 948
Query: 341 ANIDNQPGA-IGFVSRLIPTIYPISIIR-VDPVTSEPIRNKKGLCTRCEPGEPGVFIGKI 398
A+ Q G+ G V +P +R VDP T E PGE G+ I
Sbjct: 949 ADFKRQTGSKEGSVGMPLPG----VAVRIVDPETFEE----------LPPGEDGL----I 990
Query: 399 VPSNPARAYLGYVNEKDSAKKIVTDVFEI-----GDSAFLSD 435
+ P GY+ + + +++ D+ I GD L +
Sbjct: 991 LIGGPQVM-KGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDE 1031
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 49.2 bits (117), Expect = 4e-06
Identities = 71/319 (22%), Positives = 120/319 (37%), Gaps = 18/319 (5%)
Query: 34 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 93
PN+ ++ T +T Q R+A ++ + K D V+++ N P + +
Sbjct: 28 PNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87
Query: 94 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG---SNVKL-FSWSP 149
G + IN L S+ + A +E+ L SN+ L +
Sbjct: 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIH 147
Query: 150 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI---YTSGTTGLPKAAVIS 206
+ D P L+ +P ++ +QD+ I YTSGTT PK VIS
Sbjct: 148 EIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVIS 207
Query: 207 NHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 264
+ Y L I +++G T + LP++H G G A G V +R +A
Sbjct: 208 HRGAYLSTLSAIIGWEMG--TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAP 264
Query: 265 NYFSDVCKYKCTVGQYIGEMCRYLL---STPEKPEDKAHNVRLMFGNGLRPQIWSEFVDR 321
+ ++ + T + + LL S P ++ V ++ G P + V R
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP--RSGPVHVLTGGSPPPAALVKKVQR 322
Query: 322 FRIAQIGEFYGATEGNANI 340
Q+ YG TE +
Sbjct: 323 LGF-QVMHAYGLTEATGPV 340
Score = 35.4 bits (81), Expect = 0.083
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 496 SGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVV 534
+GD+ V+ G++ KDR+ D GEN+S+ EVE V+
Sbjct: 424 TGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVL 462
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 49.1 bits (117), Expect = 4e-06
Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 14/218 (6%)
Query: 35 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 94
K F+ + + + ++EA R+ G+K+ + V L++ + +F +LG + G
Sbjct: 20 GKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAG 79
Query: 95 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS 154
++ +N L + + + + EL ++
Sbjct: 80 IVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVV------VG 133
Query: 155 SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 214
Q L +E P+ + D ++Y+SG+TG+PK V ++ Y+
Sbjct: 134 RPEAGEVQLAELLATESEQFKPAATQ---ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190
Query: 215 GAIAYQ-IGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 251
A +G R D ++ L+ G +G AL F
Sbjct: 191 ELYARNTLGIREDDVVFSAAKLFFAYG----LGNALTF 224
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 48.9 bits (117), Expect = 4e-06
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T ++++ S+R+A A G++KGD V LM+ + L L K+G + LI+ + +
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 140
L C+ A AFI G D I + GS
Sbjct: 64 KHLGRCLEEAEPDAFI-GIPKADDPAAILFTSGS 96
Score = 33.1 bits (76), Expect = 0.37
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 243
++TSG+TG PK V ++ + A+ G R DR P + G A+
Sbjct: 91 LFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPPFALFGPAL 143
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 49.0 bits (117), Expect = 4e-06
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
C GV G+++ P GY + + T GD F +GD+ D G+ +
Sbjct: 327 CPAGV-PGELLLRGP-NLSPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWV 379
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
DR D F GENV E+E V+++ R+C V G+
Sbjct: 380 VDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGM 417
Score = 44.0 bits (104), Expect = 2e-04
Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 45/245 (18%)
Query: 29 HAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 86
HA P ++ + + WT +++A R+A +G G+ +A++ N V L
Sbjct: 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63
Query: 87 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE----LTDAVQEISTSLGSNV 142
+++G I +N L + L A + AE L D + ++
Sbjct: 64 HFACARVGAIYVPLNWRLSASEL---------DALLQDAEPRLLLGDDAVAAGRTDVEDL 114
Query: 143 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA 202
F S D + P P SL ++TSGT+G PK
Sbjct: 115 AAFIASAD---ALEPADTPSI--------PPERVSL-----------ILFTSGTSGQPKG 152
Query: 203 AVISNHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
++S A+ G + F P++H G + L G +++
Sbjct: 153 VMLSERNLQ----QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVS 208
Query: 259 KKFSA 263
F
Sbjct: 209 NGFEP 213
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 47.4 bits (113), Expect = 1e-05
Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T Q+ + +V+ G+K GD VA + N + W G+ +G I +N L
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSP---VPRSQA 163
+ IN A I +++I+ L S V+ + TD++ P + + A
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPS-VERYVVL--TDAAHMPQTTLKNAVA 157
Query: 164 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--- 220
++E ++ + Y TSGTTG PK + S HR L +A
Sbjct: 158 YEEWIAEADGDFAWKTFDENTAAGMCY--TSGTTGDPKGVLYS-HRSNVLHALMANNGDA 214
Query: 221 IGFRTKDRFYTPLPLYH 237
+G D +PL+H
Sbjct: 215 LGTSAADTMLPVVPLFH 231
Score = 32.8 bits (75), Expect = 0.52
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVE 531
D F +GD+ +D +GY+ DR+ D + GE +S+ ++E
Sbjct: 409 DGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLE 449
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 46.5 bits (111), Expect = 2e-05
Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 36/248 (14%)
Query: 190 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA- 248
Y +T GTTG PK A S+ A G D LPL+H GGA+ G A
Sbjct: 7 YFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHV-GGAIVTGLAP 65
Query: 249 LIFGCCVVI------RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNV 302
L G VV+ R +N++ V +Y+ T+ + + LL P D +
Sbjct: 66 LARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADISSLR 125
Query: 303 RLMFGNGLRPQIWSEFVDRFRIAQIG----EFYGATEGNANIA-NIDNQPGAIGFVSRLI 357
+ G P E RF A G E YG TEG A N P G V +
Sbjct: 126 YALTGAAPLP---VEVARRFE-AVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRL 181
Query: 358 PTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGE--------PGVFIGKIVPSNPARAYL- 408
P + + ++D L C PGE P VF G + ++ A A L
Sbjct: 182 PYT-RVRVAKLDA--------GGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLE 232
Query: 409 -GYVNEKD 415
G++N D
Sbjct: 233 DGWLNTGD 240
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 45/211 (21%)
Query: 52 EAYSNRVA--NFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK-----------LG--VI 96
EA + R A + + G+ KG V L NRPE++ + S LG +
Sbjct: 83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAV 142
Query: 97 TALINHNLRQ---------NSLLHCIN-IAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 146
++NH N+LL C++ I V + + + S G+ V++ +
Sbjct: 143 KFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLP--SLPSGTGVEIVT 200
Query: 147 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 206
+S +Q S P P +D YTSGTTG PK V++
Sbjct: 201 YS---------KLLAQGRSSPQPFRPPKP---------EDVATICYTSGTTGTPKGVVLT 242
Query: 207 NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH 237
+ + F D + LPL H
Sbjct: 243 HGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 46.9 bits (111), Expect = 3e-05
Identities = 60/319 (18%), Positives = 117/319 (36%), Gaps = 36/319 (11%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+ E A +P+ V +F+ + T ++ +NR+A+ +A+G+ V + +E E +
Sbjct: 4556 LVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMM 4615
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
L + K G ++ + L + + +G + + + L + + +
Sbjct: 4616 VGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRL-----PIPDGLAS 4670
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
+ D D P A P V P +L+Y IYTSG+TG PK
Sbjct: 4671 LALDRDEDWEGFP-----AHDP---AVRLHPDNLAY---------VIYTSGSTGRPKGVA 4713
Query: 205 IS-----NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 259
+S NH + Y++ + + + G LI G VVIR
Sbjct: 4714 VSHGSLVNHLHATGE---RYELTPDDRVLQFMSFSFDGSHEGLY---HPLINGASVVIRD 4767
Query: 260 K--FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWS 316
+ ++++ +++ TV + + L E+ + F G + +
Sbjct: 4768 DSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYD 4827
Query: 317 EFVDRFRIAQIGEFYGATE 335
+ + YG TE
Sbjct: 4828 LAWRALKPVYLFNGYGPTE 4846
Score = 44.2 bits (104), Expect = 2e-04
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 22/204 (10%)
Query: 3 QRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 62
QR L + + E A R+P + +F + + ++++ +NR+A+
Sbjct: 1986 QRILADWDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRL 2045
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 122
A+G+ VA+ E E V L + K G ++ N L + + +G + +
Sbjct: 2046 RARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLL 2105
Query: 123 YGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRV 182
L + + L + V D + + P V + +L+Y
Sbjct: 2106 TQRHLLERL-----PLPAGVARLPLDRDAEWADYPDTA--------PAVQLAGENLAY-- 2150
Query: 183 GVQDKLIYIYTSGTTGLPKAAVIS 206
IYTSG+TGLPK +S
Sbjct: 2151 -------VIYTSGSTGLPKGVAVS 2167
Score = 42.6 bits (100), Expect = 5e-04
Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 24/186 (12%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+F E R+P F ++ +NR+A+ + +G+ V + +E E V
Sbjct: 516 LFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMV 575
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
L + K G ++ L + + +GV + + L ++ + G V
Sbjct: 576 VALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGR---KLPLAAGVQVLD 632
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAA 203
+ L P + L Y IYTSG+TG PK A
Sbjct: 633 LD----------------RPAAWLEGYSEENPGTEL---NPENLAYVIYTSGSTGKPKGA 673
Query: 204 VISNHR 209
HR
Sbjct: 674 GNR-HR 678
Score = 38.8 bits (90), Expect = 0.008
Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 27/234 (11%)
Query: 25 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 84
+F E R+P+ V F + ++ +NR+A+ + +G+ V + +E E V
Sbjct: 3062 LFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMV 3121
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 144
L + K G ++ + L + + +G L+ + + + G V
Sbjct: 3122 VGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVLD 3176
Query: 145 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
+ + ++P + T P +L+Y IYTSG+TG PK
Sbjct: 3177 LDRGDENYAEANP------------AIRTMPENLAY---------VIYTSGSTGKPKGVG 3215
Query: 205 ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 258
I + + G DR + + L+ G VV+
Sbjct: 3216 IRHSALSNHLCWMQQAYGLGVGDRVLQFTT-FSFDVFVEELFWPLMSGARVVLA 3268
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 45.3 bits (108), Expect = 6e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGV 533
F +GDL V+ GY+ KDR+ D GEN+S+ EVE V
Sbjct: 418 FHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDV 457
Score = 36.1 bits (84), Expect = 0.043
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T + A R+A+ +G+ +GD+VA++L N P V G+ G + +N L
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA 104
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
S+ + I E + +E + +L K D P + +
Sbjct: 105 ASIAFMLRHGEAKVLIVDTEFAEVARE-ALALLPGPKPLV----IDVDDPEYPGGRFIGA 159
Query: 167 LLSE--VPTSPPSLSYRVGVQDKLIYI---YTSGTTGLPKAAVISNHRYYFL---GGAIA 218
L E + + P ++ + D+ I YTSGTTG PK V+ +HR +L +A
Sbjct: 160 LDYEAFLASGDPDFAWTLP-ADEWDAIALNYTSGTTGNPK-GVVYHHRGAYLNALSNILA 217
Query: 219 YQIGFRTKDRFYTPLPLYHTAG 240
+ + +T LP++H G
Sbjct: 218 WGMPKHPV-YLWT-LPMFHCNG 237
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 45.5 bits (108), Expect = 6e-05
Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 74/249 (29%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
T +Q + A FL GL++ SV ++ N PE+ ++ +G I A
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWF-----IAAVGAIFA------- 56
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV----------------------- 142
G++ IY +A Q ++ + +N+
Sbjct: 57 ----------GGIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLK 106
Query: 143 --------------KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 188
L+SW + S +P Q + + S+ P +L
Sbjct: 107 AIIQYREPLKEKEPNLYSWKEFMELGRS-IPDEQLDAIIESQKPNQCCTL---------- 155
Query: 189 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIG 246
IYTSGTTG+PK ++S+ + A + RT ++ + LPL H A + I
Sbjct: 156 --IYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIW 213
Query: 247 QALIFGCCV 255
+ G CV
Sbjct: 214 LPISVGGCV 222
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 44.6 bits (106), Expect = 1e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 12 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 67
ARR +K DL + DI HA + + + + +++ +++ S+ +A QG+
Sbjct: 13 ARRYREKGYWQDLPLTDILTRHA--ASDAIAVICGERQFSYRELNQASDNLACSLRRQGI 70
Query: 68 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHN 103
K GD+ + L N EF + L KLGV + AL +H
Sbjct: 71 KPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 44.0 bits (104), Expect = 2e-04
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 66 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 125
G+ V M+ N E + + ++ +G + +N L + ++H IN A +
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 126 ELTDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 184
L + + EI +F D DS+++ +P + + + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELD 179
Query: 185 QDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 243
+ I Y++GTTG PK V S HR +L + RT D
Sbjct: 180 ETTAAAICYSTGTTGAPKGVVYS-HRSLYLQS-----LSLRTTDSL-------------- 219
Query: 244 CIGQALIFGCCVVI 257
+ F CCV I
Sbjct: 220 AVTHGESFLCCVPI 233
Score = 29.8 bits (67), Expect = 4.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYG 547
D +GD+ + + G+L DR D R GE + + ++E + A E +C V G
Sbjct: 429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIG 485
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 43.6 bits (103), Expect = 2e-04
Identities = 99/420 (23%), Positives = 153/420 (36%), Gaps = 124/420 (29%)
Query: 46 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 105
++ Q+++ S R AN + G+ KG+ V +L PE LG KLG +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYG------- 53
Query: 106 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS-WSPDTDSSSSPVPRSQAL 164
LFS + P+ P+ L
Sbjct: 54 -------------------------------------PLFSAFGPE------PIRDRLEL 70
Query: 165 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---YYFLGGAIAYQI 221
++V + P L R +D + +TSGTTG PK V+ HR ++ Y +
Sbjct: 71 GE--AKVLITTPELYERTDPEDPALLHFTSGTTGKPK-GVLHVHRAVVAHYATA--RYVL 125
Query: 222 GFRTKDRFY-TPLPLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTV-- 277
R D ++ T P + T G + I L+ G +V+ + +F A ++ + + K TV
Sbjct: 126 DLRPDDVYWCTADPGWVT-GTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWY 184
Query: 278 -----------------GQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ--IWSEF 318
+Y R++ S G L P+ +W E
Sbjct: 185 TAPTALRMLMRAGPELAARYDLSSLRHIASV---------------GEPLNPEVVVWGEK 229
Query: 319 VDRFRIAQIGEFYGATE-GNANIAN---IDNQPGAIGFVSRLIPTIYPISIIR-VDPVTS 373
V I + + TE G IAN I +PG++G R +P I I R D +T
Sbjct: 230 VLGMPIH---DTWWQTETGAIMIANYPGIPVKPGSMG---RPLPGIEAAVIERDGDGLTP 283
Query: 374 EPIRNKKG-LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 432
+ G L + PG P +F R YLG NE+ A V + GD A+
Sbjct: 284 VTGPGQVGELALK--PGWPSMF----------RGYLG--NEERYASSFVDGWYLTGDLAY 329
Score = 36.2 bits (84), Expect = 0.040
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 467 RAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVS 526
R YLG NE+ A V D +L+GDL D+ GY +F R D + G V
Sbjct: 304 RGYLG--NEERYASSFV-------DGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVG 354
Query: 527 TCEVEGVVSNASEYRDCVVYG 547
EVE + + V G
Sbjct: 355 PFEVESALMEHPAVAEAGVIG 375
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of
NRPS recognizes a specific amino acid or hydroxy acid
and activates it as an (amino) acyl adenylate by
hydrolysis of ATP. The activated acyl moiety then forms
a thioester to the enzyme-bound cofactor
phosphopantetheine of a peptidyl carrier protein
domain. NRPSs are large multifunctional enzymes which
synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic
acid independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
myxovirescin (TA) antibiotic biosynthetic gene in
Myxococcus xanthus; TA production plays a role in
predation. It also includes the salinosporamide A
polyketide synthase which is involved in the
biosynthesis of salinosporamide A, a marine microbial
metabolite whose chlorine atom is crucial for potent
proteasome inhibition and anticancer activity.
Length = 438
Score = 43.3 bits (103), Expect = 2e-04
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 34 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 93
P+ + ++ + +++ SN++A A G+ GD V ++LE + V L + K
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 94 G 94
G
Sbjct: 61 G 61
Score = 34.5 bits (80), Expect = 0.15
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 186 DKLIY-IYTSGTTGLPKAAVISNHR--YYFLGGAIAYQIGFRTKDRF 229
D L Y IYTSG+TG PK +S HR FL ++A + G DR
Sbjct: 93 DDLAYVIYTSGSTGKPKGVEVS-HRALVNFL-LSMARRPGLGASDRL 137
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 42.3 bits (100), Expect = 7e-04
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 51/209 (24%)
Query: 10 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 69
A V + T++ + + A ++P+ +++ +++ +AN +G+K
Sbjct: 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKP 507
Query: 70 GDSVALMLENRPEFVCLWL------GLSKLGVITALINHNLR------QNSLLHCINIAG 117
GDSVA+ L R F+ L L G + L + T + L+ + SLL
Sbjct: 508 GDSVAVALP-RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLL------- 559
Query: 118 VSAFIYGAELTDAVQEISTSLGSNVKLFSW-SPDTDSSSSPVPRSQALSPLLSEVPTSPP 176
+T A Q + ++ + +P ++P+ SQ P
Sbjct: 560 ---------ITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ------------PH 598
Query: 177 SLSYRVGVQDKLIYIYTSGTTGLPKAAVI 205
+Y I+TSG+TG PK ++
Sbjct: 599 HTAY---------IIFTSGSTGRPKGVMV 618
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 41.5 bits (97), Expect = 0.001
Identities = 62/334 (18%), Positives = 118/334 (35%), Gaps = 42/334 (12%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
A R P + + ++ + ++++ + +A G+ G +V +M N FV
Sbjct: 45 AARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA 104
Query: 90 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 149
+ LG I+ R ++L + +S + E + + V + +
Sbjct: 105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDPAT 160
Query: 150 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 209
S P + P I + TSGTTG PK +
Sbjct: 161 AGAEESGGRPA------------VAAPGR----------IVLLTSGTTGKPKGVPRAPQL 198
Query: 210 YYFLGGAIAY--QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 267
+G + + RT R +P++H G M + + G V+ + F A
Sbjct: 199 RSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM-LTIALGGTVLTHRHFDAEAAL 257
Query: 268 SDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN------VRLMFGNGLRPQIWSEFVDR 321
+ ++ + + +L P P +A N V + G+ L P + F+D
Sbjct: 258 AQASLHRADAFTAVPVVLARILELP--PRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDT 315
Query: 322 FRIAQIGEFYGATE----GNANIANIDNQPGAIG 351
+ + YG+TE A A++ + P +G
Sbjct: 316 YGDI-LYNGYGSTEVGIGALATPADLRDAPETVG 348
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 41.2 bits (97), Expect = 0.001
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY N D K++T D F +GD+ VMD+ GY DR D G NV E+
Sbjct: 419 GYWNRPDETAKVMTA-----DGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEI 473
Query: 531 EGVVSNASEYRDCVVYGV 548
E VV++ + GV
Sbjct: 474 EEVVASHPGVLEVAAVGV 491
Score = 36.2 bits (84), Expect = 0.043
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
++AD+ E + ++ F+ T +++ S +A + ++GL KG VA+M+ N
Sbjct: 24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPN 82
Score = 30.8 bits (70), Expect = 2.0
Identities = 66/267 (24%), Positives = 96/267 (35%), Gaps = 53/267 (19%)
Query: 192 YTSGTTGLPKAAVISNHRYYF---LGGAIAYQIGFRTKDR-----FYTPLPLYH----TA 239
YT GTTG+ K A + HR L Q F K R F LPLYH T
Sbjct: 211 YTGGTTGVSKGATLL-HRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTV 269
Query: 240 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 299
G + + G ++I + ++ KY+ + + + LL+ P+ +
Sbjct: 270 CGLLGMRTG---GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDF 326
Query: 300 HNVRLMFGNGL---RP--QIWSEFVDRFRIAQIGEFYGATE----GNANIANIDNQPGAI 350
+ + G G+ RP + W E I E YG +E N + G I
Sbjct: 327 SKLIVANGGGMAVQRPVAERWLEMTG----CPITEGYGLSETSPVATCNPVDATEFSGTI 382
Query: 351 GFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGY 410
G P+ P T IR+ G GEP G+I P + GY
Sbjct: 383 GL---------PL------PSTEVSIRDDDG--NDLPLGEP----GEICIRGP-QVMAGY 420
Query: 411 VNEKDSAKKIVTD--VFEIGDSAFLSD 435
N D K++T F GD + +
Sbjct: 421 WNRPDETAKVMTADGFFRTGDVGVMDE 447
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 41.0 bits (97), Expect = 0.001
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 30/182 (16%)
Query: 28 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 87
E A P+ + + + T Q++ S+ +A F + L + + PE + +
Sbjct: 10 EFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATF 69
Query: 88 LGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYGAELTDAVQEIS-TSLGSNVKLF 145
LG K G H I + S AE + + E++ SL +
Sbjct: 70 LGAVKAG----------------HAYIPVDVSSP----AERIEMIIEVAKPSL-----II 104
Query: 146 SWSP-DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
+ + PV L + + P + V D I+TSGTTG PK
Sbjct: 105 ATEELPLEILGIPVITLDELKDIFATGN--PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQ 162
Query: 205 IS 206
IS
Sbjct: 163 IS 164
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 41.1 bits (97), Expect = 0.001
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 119
L + G++V +ML N + L G + A+IN + ++L A V
Sbjct: 675 LKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVL 734
Query: 120 ---AFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVP 172
AFI A L ++ + +++ + D + + + L PL+
Sbjct: 735 TSRAFIEKARLGPLIEALEFG----IRII-YLEDVRAQIGLADKIKGLLAGRFPLVYFCN 789
Query: 173 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA-IAYQIGFRTKDRFYT 231
P D + ++TSG+ G PK V+S HR A +A +I F +D+ +
Sbjct: 790 RDP---------DDPAVILFTSGSEGTPKGVVLS-HRNLLANRAQVAARIDFSPEDKVFN 839
Query: 232 PLPLYHTAG 240
LP++H+ G
Sbjct: 840 ALPVFHSFG 848
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 41.2 bits (97), Expect = 0.002
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 22 IADIFREHAVRSPNKVIFM----FEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDS 72
I DIF ++A + P++ + F + +T +Q+ SN +A++ L G+K+GD
Sbjct: 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDV 297
Query: 73 VALMLENRPEFVCLWLGLSKLGVITALINHNL---RQNSLLHC------INI--AG---- 117
V + + V +G+ K G ++I+ RQ L I I AG
Sbjct: 298 VMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQ 357
Query: 118 -VSAFIYGAELTDAVQEI-STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV---P 172
V +I EL + EI + +L + L S + + P QAL + V P
Sbjct: 358 LVRDYIDK-EL-ELRTEIPALALQDDGSLVGGSLEGGETDVLAP-YQALKDTPTGVVVGP 414
Query: 173 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH---RYYFLGGAIAYQIGFRTKDRF 229
S P+LS +TSG+ G+PK V+ H YYF +A + G D+F
Sbjct: 415 DSNPTLS------------FTSGSEGIPK-GVLGRHFSLAYYF--PWMAKRFGLSENDKF 459
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 40.8 bits (95), Expect = 0.002
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 106
T Q+ + R+ +GL GD V L L + P+ V L L GV+ L N L +
Sbjct: 32 THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHR 91
Query: 107 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 166
+ + + + + + F S +++
Sbjct: 92 DD--------------HALAARNTEPALVVTSDALRDRFQPSRVAEAAE----------- 126
Query: 167 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 210
L+SE P +G YTSGTTG PKAA+ HR+
Sbjct: 127 LMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAI---HRH 167
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 40.3 bits (95), Expect = 0.002
Identities = 61/251 (24%), Positives = 92/251 (36%), Gaps = 50/251 (19%)
Query: 30 AVRSPNKVIFMFENT--EW-------TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
A +P++V EW +QV A +A L GL + ++ N
Sbjct: 5 ARETPDRVFLAERRGGGEWRRVTYAEALRQVRA----IAQALLDLGLSAERPLMILSGNS 60
Query: 81 PEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY---GAELTDA 130
E L L GV A L++ + + L H ++ ++ GA A
Sbjct: 61 IEHALLALAAMYAGVPVAPVSPAYSLLSKDFAK--LRHIFDLL-TPGAVFAEDGAAFARA 117
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY-RVGVQDKLI 189
+ + G V + + +P + A + LL+ PT+ ++ VG
Sbjct: 118 LAAL-GLAG--VPVVA------VRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAK 168
Query: 190 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP--------LPLYHTAGG 241
Y++TSG+TGLPK AVI+ HR L A F T LP HT GG
Sbjct: 169 YLFTSGSTGLPK-AVINTHR--MLCANQAMIAQCW---PFLTEEPPVLVDWLPWNHTFGG 222
Query: 242 AMCIGQALIFG 252
L G
Sbjct: 223 NHNFNMVLYNG 233
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 39.8 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 27 REHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVC 85
H R FE T WT Q + +NR+A+ + G+ G+ V L N P V
Sbjct: 43 HVHNGRGNRPCFRTFEET-WTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVA 101
Query: 86 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 130
WL + K G I LR L ++ A ++ + LT A
Sbjct: 102 CWLAVLKAGAIVVTTMPLLRAKELTTIVDKARITHALCDKRLTAA 146
Score = 39.4 bits (92), Expect = 0.004
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 488 EIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYG 547
+ D ++GD+ D+ GY ++ R+ D G N++ EVE + + +C V G
Sbjct: 361 YVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIG 420
Query: 548 V 548
V
Sbjct: 421 V 421
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 39.5 bits (93), Expect = 0.004
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 29 HAVRSPNKVIFMFENTEWTAQQVEAYS------NRVANFFLAQGLKKGDSVALMLENRPE 82
H P+KV ++E E + Y R AN + G+KKGD VA+ + PE
Sbjct: 66 HLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPE 125
Query: 83 FVCLWLGLSKLGVITALI 100
L +++G I +++
Sbjct: 126 AAIAMLACARIGAIHSVV 143
Score = 31.4 bits (72), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 182 VGVQDKLIYIYTSGTTGLPKAAV 204
+ +D L +YTSG+TG PK +
Sbjct: 233 MDSEDPLFILYTSGSTGKPKGVL 255
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 39.8 bits (94), Expect = 0.004
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 34 PNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 87
NKV ++E + T +++ R AN + G+KKGD VA+ + PE
Sbjct: 61 GNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAM 120
Query: 88 LGLSKLGVI 96
L +++G I
Sbjct: 121 LACARIGAI 129
Score = 31.7 bits (73), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 186 DKLIYIYTSGTTGLPKAAV 204
D L +YTSG+TG PK V
Sbjct: 226 DPLFILYTSGSTGKPKGVV 244
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 39.4 bits (92), Expect = 0.004
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVV 534
F SGDL V GY+ KDR+ D GEN+S+ EVE VV
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVV 472
Score = 38.7 bits (90), Expect = 0.009
Identities = 62/280 (22%), Positives = 103/280 (36%), Gaps = 57/280 (20%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 89
AV P + + + +T Q R+A+ + + G +VA++ N P ++
Sbjct: 30 AVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP---AMYEA 86
Query: 90 LSKLGVITALINHNLRQNSLLHCINI---AGVSAFIYGAELTDAV---QEISTSLGSNVK 143
GV A ++++C+NI A AF+ ++ V QE T +K
Sbjct: 87 --HFGVPMA--------GAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALK 136
Query: 144 LFSWSPDTDSSSSPVPRSQALSPLL---SEVPTSPPSLSYRVG----------------- 183
+ + SS P PLL + P SL Y +G
Sbjct: 137 I--LAEKKKSSFKP--------PLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF 186
Query: 184 ----VQDKLIYI---YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 236
D+ I YTSGTT PK V+ + Y + + A G + LP++
Sbjct: 187 AWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMF 246
Query: 237 HTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 276
H G A + G + +R + +A +S + Y T
Sbjct: 247 HCNGWCFTWTLAALCGTNICLR-QVTAKAIYSAIANYGVT 285
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 39.2 bits (92), Expect = 0.005
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-------GFRTKDRFYTPLPLYHTAG--- 240
+YTSGTTG PK V+S AIA + + D LPL+H G
Sbjct: 134 VYTSGTTGPPKGVVLSRR-------AIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVL 186
Query: 241 ---GAMCIGQALI 250
G + IG +
Sbjct: 187 GVLGPLRIGNRFV 199
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 38.8 bits (91), Expect = 0.007
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 31 VRSPNKVIFMFENTEWTAQQVEAYS---NRVANF---FLAQGLKKGDSVALMLENRPEFV 84
V+ + E T + + Y+ R+ NF GL KG +VA+ E R E++
Sbjct: 101 VKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWL 160
Query: 85 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE----LTDAVQEISTSLGS 140
G+ ++ A + NL +++L + + A + + L ++ +
Sbjct: 161 ASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTT 220
Query: 141 NVKLFSWSPDTDSSSSPV-PRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTG 198
+ L S D+ + + ++ S P ++ D L I YTSGTTG
Sbjct: 221 IIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIP---ENNDDLALIMYTSGTTG 277
Query: 199 LPKAAVISNHR 209
PK V+ H
Sbjct: 278 DPK-GVMHTHG 287
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 38.8 bits (91), Expect = 0.007
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 160 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 219
R ++ LL+ P P G D + TSG+TG PKA I++ Y A+
Sbjct: 131 RVLTVADLLAADPIDPVE----TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV 186
Query: 220 QIGFRT-KDRFYTPLPLYHTAG--GAMCIGQALIFGCCVV 256
F D + LPL+H G G + + + FG +V
Sbjct: 187 AAEFDVETDVMVSWLPLFHDMGMVGFLTV--PMYFGAELV 224
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 38.5 bits (90), Expect = 0.008
Identities = 96/411 (23%), Positives = 150/411 (36%), Gaps = 102/411 (24%)
Query: 66 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--- 122
GLKKGD VALM+ N ++ G+ + G+I +N L H +N +G A +
Sbjct: 70 GLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVS 129
Query: 123 -YGAELTDAVQE------ISTSLGSNVKLFSWSPDTDSSSSP--------VPRSQALSPL 167
+ L V + I T +G D S+ V + L
Sbjct: 130 NFAHTLEKVVFKTPVKHVILTRMG------------DQLSTAKGTLVNFVVKYIKRL--- 174
Query: 168 LSEVPTS--PPSLSYRVGVQD--KLIYI-------------YTSGTTGLPKAAVISNHRY 210
VP P ++S+R + ++ Y+ YT GTTG+ K A+++ HR
Sbjct: 175 ---VPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLT-HRN 230
Query: 211 Y---FLGGAIAYQIGFRTKDRF-YTPLPLYHT-AGGAMCIGQALIF----GCCVVIRKKF 261
AY T LPLYH A C L+F G ++I
Sbjct: 231 MLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNC----LLFIELGGQNLLITNPR 286
Query: 262 SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI-----WS 316
+ ++ KY T + + LL+ E E +++L G G+ Q W
Sbjct: 287 DIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWV 346
Query: 317 EFVDRFRIAQIGEFYGATEGN----ANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVT 372
+ ++ + E YG TE + N ++D G+IG PV
Sbjct: 347 KLTGQYLL----EGYGLTECSPLVSVNPYDLDYYSGSIGL-----------------PVP 385
Query: 373 SEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD 423
S I+ PGEPG K P + LGY ++ +++ D
Sbjct: 386 STEIKLVDDDGNEVPPGEPGELWVK----GP-QVMLGYWQRPEATDEVIKD 431
Score = 37.7 bits (88), Expect = 0.015
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 470 LGYVNEKDSAKKIVTDVFEIGDSAFLS-GDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
LGY ++ +++ D +L+ GD+ VMD+ G+L DR D G NV
Sbjct: 416 LGYWQRPEATDEVIKD-------GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN 468
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E VV + + GV
Sbjct: 469 EIEDVVMLHPKVLEVAAVGV 488
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 38.5 bits (90), Expect = 0.009
Identities = 60/241 (24%), Positives = 91/241 (37%), Gaps = 43/241 (17%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTE-----WTAQQVEAYSNRVANFFLAQGLKKGDSVA 74
L I+ + HA R + E +T + E + ++A A G++ GD V
Sbjct: 10 LLISSLI-AHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVG 68
Query: 75 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 134
+ N + + G+S G + IN L + + +N A ++ V +
Sbjct: 69 TLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDAL 128
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR--VGVQDKLIY-- 190
+ NVK W TD++ P S P L Y VG QD Y
Sbjct: 129 APQC-PNVK--GWVAMTDAAHLP--------------AGSTPLLCYETLVGAQDG-DYDW 170
Query: 191 -----------IYTSGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLY 236
YTSGTTG PK A+ S HR L G A+ +G +D +P++
Sbjct: 171 PRFDENQASSLCYTSGTTGNPKGALYS-HRSTVLHAYGAALPDAMGLSARDAVLPVVPMF 229
Query: 237 H 237
H
Sbjct: 230 H 230
Score = 32.4 bits (74), Expect = 0.76
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 491 DSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGV 533
D F +GD+ +D G++ DR+ D + GE +S+ ++E V
Sbjct: 408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENV 450
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 38.1 bits (89), Expect = 0.012
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F + DL +D GYL+ R GENV EVE + +D V G+
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGL 380
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 37.9 bits (89), Expect = 0.014
Identities = 48/194 (24%), Positives = 64/194 (32%), Gaps = 79/194 (40%)
Query: 190 YIYTSGTTGLPKAAVISNHR------------YYFLGGAIAYQIGFRTKDRFYTP----- 232
+++TSG+TGLPK AVI+ HR + FL P
Sbjct: 214 FLFTSGSTGLPK-AVINTHRMLCANQQMLAQTFPFLA---------------EEPPVLVD 257
Query: 233 -LPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL--- 288
LP HT GG +G L G + Y D K T G E R L
Sbjct: 258 WLPWNHTFGGNHNLGIVLYNG----------GTLYIDD---GKPTPGG-FDETLRNLREI 303
Query: 289 -----LSTP----------EKPEDKAHN----VRLMF--GNGLRPQIWSEFVDRFRIAQI 327
+ P E+ ++L+F G L +W + +DR A
Sbjct: 304 SPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW-DRLDRVAEATC 362
Query: 328 GEF------YGATE 335
GE G TE
Sbjct: 363 GERIRMMTGLGMTE 376
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid
in the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 37.6 bits (88), Expect = 0.016
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 30 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV----- 84
A + P++ + T +++ ++R+A LA G + GD VA+ P+
Sbjct: 1 AAKHPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILA 60
Query: 85 CLWLG 89
CL G
Sbjct: 61 CLKAG 65
Score = 34.9 bits (81), Expect = 0.12
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 450 RCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDS--AFLSGDLLVMDKWGY 507
R P G++V + P + GY+N + K F + + +GDL+ ++ G
Sbjct: 291 RPVPPGEEGELVIAGPQVS-PGYLNNPEKTAK----AFFQDEGQRWYRTGDLVYLEDDGL 345
Query: 508 LYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVV 545
L + R + G + E+E + + VV
Sbjct: 346 LVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVV 383
Score = 34.1 bits (79), Expect = 0.18
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 155 SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHR--YY 211
S P R + P +L V D L YI +TSG+TG PK IS H
Sbjct: 74 SQPAERIAKILEA-----AGPAAL---VADPDDLAYILFTSGSTGKPKGVQIS-HANLAS 124
Query: 212 FLGGAIAYQIGFRTKDRF 229
FL + D F
Sbjct: 125 FLDWMVED-FDLTEGDVF 141
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 37.3 bits (87), Expect = 0.016
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 31/176 (17%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYY--FLGGA-----------IAYQIGFRTKD-RFYT 231
D L +YT GTTG+PK + + LGG +A Q+ RF
Sbjct: 4 DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLP 63
Query: 232 PLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGE-MCRYL 288
PL H AG + + AL G VV+ KF + V K++ +G+ R L
Sbjct: 64 ACPLMHGAGQWLALS-ALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPL 122
Query: 289 LSTPEKPEDKAHNVRLMFG---NGLRPQIWSEFVDRFRIAQ-----IGEFYGATEG 336
L E +++ + +G +WS V + + + + GA+E
Sbjct: 123 LEALEAAGR--YDLSSLRAISSSGA---MWSPEVKQGLLELLPNLALVDALGASET 173
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 37.4 bits (87), Expect = 0.021
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 164 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-- 221
L P L++V P +D + ++TSG+ G PK V S H+ A QI
Sbjct: 353 LMPRLAQVKQQP---------EDAALILFTSGSEGHPKGVVHS-HKSLL---ANVEQIKT 399
Query: 222 --GFRTKDRFYTPLPLYHTAG 240
F DRF + LPL+H+ G
Sbjct: 400 IADFTPNDRFMSALPLFHSFG 420
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 37.2 bits (87), Expect = 0.022
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 186 DKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 240
D + +I ++SG+TG PK ++++ AI ++D F + +PL H G
Sbjct: 106 DDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMG 161
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 36.4 bits (85), Expect = 0.040
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 36/186 (19%)
Query: 35 NKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 90
+KV + ++T ++++ SN+ AN G++KGD V + + PE LG
Sbjct: 59 DKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGA 118
Query: 91 SKLG-VITALINHNLRQNSLLHCINIAGVSAFIYGA-----ELTDAVQEISTSLGSNVKL 144
K G ++ L AF+ A E ++A I+T K
Sbjct: 119 LKNGAIVGPLF------------------EAFMEEAVRDRLEDSEAKVLITTPALLERKP 160
Query: 145 FSWSPD------TDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 198
P P + + L+ + +D I YTSG+TG
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEW--TDREDGAILHYTSGSTG 218
Query: 199 LPKAAV 204
PK +
Sbjct: 219 KPKGVL 224
Score = 31.4 bits (72), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGV 533
++SGD MD+ GY +F+ R D + GE V EVE
Sbjct: 434 YVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESK 473
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 35.4 bits (82), Expect = 0.073
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 47 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI-----N 101
T ++ +R+A G+ KGD V + + PE V L +++G I +++ +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134
Query: 102 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDT----DSSSSP 157
L + V+A +G E V L ++L P + P
Sbjct: 135 KELASR-IDDAKPKLIVTA-SFGIE-PGRVVPYKPLLDKALELSQHKPHKVLILNRGQVP 191
Query: 158 VPRSQALSPLLSE-VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 204
P +E + + P V D L +YTSGTTG PK V
Sbjct: 192 APLKPGRDLDWAELMAKARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239
Score = 34.6 bits (80), Expect = 0.16
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ +GD D+ GYL+ RT D G +ST E+E V + +C V GV
Sbjct: 463 YDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGV 517
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 34.6 bits (80), Expect = 0.13
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 486 VFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVV 545
V ++GD + DL + G L+F R D G NV EVE V+ ++ VV
Sbjct: 285 VVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVV 344
Query: 546 Y 546
Y
Sbjct: 345 Y 345
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 34.6 bits (79), Expect = 0.15
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 170 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-----FR 224
++P S D +YTSGTTG PK +ISN L + +
Sbjct: 216 DLPIKKKS--------DICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALT 267
Query: 225 TKDRFYTPLPLYH 237
KD + + LPL H
Sbjct: 268 VKDVYLSYLPLAH 280
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 34.5 bits (79), Expect = 0.15
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 42 ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALIN 101
+ T +Q+ N A+ A G+ +GD V + + E V L +++G I +++
Sbjct: 80 QERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVF 139
Query: 102 HNLRQNSL 109
+SL
Sbjct: 140 GGFASHSL 147
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 34.0 bits (78), Expect = 0.19
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD+ V+D G++ DR D G NV E+E VV + +C GV
Sbjct: 443 FKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGV 497
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 33.8 bits (78), Expect = 0.24
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 186 DKLIY-IYTSGTTGLPKAAVISNHR 209
D L Y IYTSG+TG PK I HR
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIE-HR 128
Score = 33.0 bits (76), Expect = 0.39
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 22 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 81
+ ++ A R+P+ + + + T ++ +NR+A A G+ V + L P
Sbjct: 1 LHELVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSP 60
Query: 82 EFVCLWLGLSKLG 94
+ V L + K G
Sbjct: 61 DLVVALLAVLKAG 73
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 33.2 bits (77), Expect = 0.37
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 56 NRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 96
R AN + G+KKGD VA+ + PE L +++G +
Sbjct: 109 CRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149
Score = 28.6 bits (65), Expect = 10.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 181 RVGVQDKLIYIYTSGTTGLPK 201
+ +D L +YTSG+TG PK
Sbjct: 241 PMDAEDPLFILYTSGSTGKPK 261
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 33.2 bits (76), Expect = 0.40
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRW-KGENVSTCE 529
GY EK+ K T+ D F +GD++ ++K G L F DR+ + +GE + T
Sbjct: 554 GYFLEKEQTKNAFTE-----DGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDM 608
Query: 530 VEGVVSNASEYRDCVVYG 547
+ + S S CVVYG
Sbjct: 609 LNNLYSQISFINFCVVYG 626
Score = 32.8 bits (75), Expect = 0.52
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 191 IYTSGTTGLPKAAVISNHRYYF 212
+YTSGT+G PK ++SN Y
Sbjct: 310 VYTSGTSGKPKGVMLSNKNLYN 331
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 32.8 bits (75), Expect = 0.53
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 33/243 (13%)
Query: 22 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLEN 79
I + ++ R +K F T ++ S A + L Q LK GD +A+ L N
Sbjct: 26 IQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAW-LQQHTDLKPGDRIAVQLPN 84
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 139
++ G + G+I N + H N +G A + A + +++ G
Sbjct: 85 VLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTG 144
Query: 140 SNVKLFSWSPDTDSSSSPVPR---SQALSPLLSEVPTS--PPSLSYR------------- 181
+ + D P+ R + + + VP P ++ +
Sbjct: 145 VKHVIVTEVADM---LPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTE 201
Query: 182 --VGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-----LGGAIAYQIGFRTKDRFYTPLP 234
D + YT GTTG+ K A+++ HR + + + PLP
Sbjct: 202 ANPQADDVAVLQYTGGTTGVAKGAMLT-HRNLVANMLQCRALMGSNLN-EGCEILIAPLP 259
Query: 235 LYH 237
LYH
Sbjct: 260 LYH 262
Score = 30.9 bits (70), Expect = 2.2
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY ++ +I+ D +GD+ ++ + GY+ DR D G NV E+
Sbjct: 417 GYWQRPEATDEILDS-----DGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNEL 471
Query: 531 EGVVSNASEYRDCVVYGV 548
E V++ C GV
Sbjct: 472 EDVLAALPGVLQCAAIGV 489
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 32.1 bits (73), Expect = 0.81
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 19/59 (32%)
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQI------------GFRTKDRFYTPLPLYH 237
+YTSGTTG PK +++N AI ++ +D +++ LPL H
Sbjct: 226 MYTSGTTGEPKGVILTN-------RAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 31.6 bits (72), Expect = 1.2
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 188 LIYIYTSGTTGLPKAAVISN 207
L +YTSGTTG KA V SN
Sbjct: 257 LYILYTSGTTGNSKAVVRSN 276
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 31.7 bits (72), Expect = 1.3
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 55/233 (23%)
Query: 37 VIFMFENTEWTA---QQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVC----LW 87
V+ E+ W +V + VA A+ L + A+ L P E V W
Sbjct: 20 VVLDRESGLWRRHPWPEVHGRAENVA----ARLLDRDRPGAVGLVGEPTVELVAAIQGAW 75
Query: 88 LGLSKLGVITALI-NHNLRQ---NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVK 143
L + + ++ + + + +L I + +G+ L + ++ + +S+
Sbjct: 76 LAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL-ERLRAVDSSV----- 129
Query: 144 LFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK-- 201
+ ++++ RS +L+P + P++ +Q T+G+TG P+
Sbjct: 130 ----TVHDLATAAHTNRSASLTP----PDSGGPAV-----LQG------TAGSTGTPRTA 170
Query: 202 ----AAVISNHRYYFLGGAIAYQIGF-RTKDRFYTPLPLYHTAGGAMCIGQAL 249
AV+SN R + ++G D + LPLYH G A + AL
Sbjct: 171 ILSPGAVLSNLR------GLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAAL 217
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 31.4 bits (71), Expect = 1.5
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 16/186 (8%)
Query: 57 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL------- 109
++AN+ G+KKGD+V + L E L +++G + +++ SL
Sbjct: 132 QLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDC 191
Query: 110 -----LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 164
+ C + I ++ DA + S G +V + + + + Q
Sbjct: 192 KPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEG 251
Query: 165 SPLLSE--VPTSPPSLSYR-VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 221
+ + VP P V +D L +YTSG+TG PK V+ Y + A ++
Sbjct: 252 RDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK-GVLHTTGGYMVYTATTFKY 310
Query: 222 GFRTKD 227
F K
Sbjct: 311 AFDYKP 316
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus.
Length = 185
Score = 29.8 bits (68), Expect = 2.4
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 18/78 (23%)
Query: 71 DSVALMLENRPEFVCLWLG---LSKLGVITALINHNLRQNSLL---HCINIAGVSAFIYG 124
DS+AL+ + L +L + ++H LR S ++ G
Sbjct: 11 DSMALL------HLLSELKPRLGLRLVAVH--VDHGLRPESDEEAAFVADL----CAKLG 58
Query: 125 AELTDAVQEISTSLGSNV 142
L V ++ G N+
Sbjct: 59 IPLYILVVALAPKPGGNL 76
>gnl|CDD|147381 pfam05167, DUF711, Uncharacterized ACR (DUF711). The proteins in
this family are functionally uncharacterized. The
proteins are around 450 amino acids long. It is likely
that this family represents a group of
glycerol-3-phosphate dehydrogenases.
Length = 390
Score = 30.3 bits (69), Expect = 2.6
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV-----ITALINHNLRQNSLLHCINIAG 117
LA GDSVA +LE G KLG AL+N +++ + + G
Sbjct: 248 LAPSPWVGDSVAEILEEM--------GGEKLGAPGTTAALALLNDAVKKGGAMASSKVGG 299
Query: 118 VS-AFIYGAE---LTDAVQEISTSL 138
+S AFI +E L + V E + +L
Sbjct: 300 LSGAFIPVSEDAGLIERVAEGALTL 324
>gnl|CDD|213069 cd11753, GH94N_ChvB_NdvB_2_like, Second GH94N domain of cyclic beta
1-2 glucan synthetase and similar domains. The
glycoside hydrolase family 94 (previously known as
glycosyltransferase family 36) includes cyclic beta 1-2
glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the
chromosomal chvB virulence gene). This second of two
tandemly repeated GH94-N-terminal-like domains has not
been characterized functionally. Some beta 1-2 glucan
synthetases are annotated as NdvB (nodule development B)
gene products, glycosyltransferases required for the
synthesis of cyclic beta-(1,2)-glucans, which play a
role in interactions between bacteria and plants.
Length = 336
Score = 30.2 bits (69), Expect = 2.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 159 PRSQALSPLLSE-VPTSPPSLS----------YRVGVQDKLIYIYTSGTTGLPKAAVISN 207
PR QA LL E +P P ++ + + + +T+ T LP+ ++SN
Sbjct: 9 PRIQAAELLLQERIPREVPIITPRLEELSRPAKKEEEAPEPVRRFTTPDTALPEVHLLSN 68
Query: 208 HRY 210
RY
Sbjct: 69 GRY 71
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 30.3 bits (69), Expect = 3.0
Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 174 SPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYF------LGGAIAYQIGFRTK 226
SP R Y+ YTSG+T P ++S HR + G
Sbjct: 148 SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVS-HRNVIANFEQLMSDYFGDTGGVPPP 206
Query: 227 DR-FYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
D + LP YH G L+ G C I
Sbjct: 207 DTTVVSWLPFYHDMG--------LVLGVCAPI 230
>gnl|CDD|176557 cd08620, PI-PLCXDc_like_1, Catalytic domain of uncharacterized
hypothetical proteins similar to eukaryotic
phosphatidylinositol-specific phospholipase C, X domain
containing proteins. This subfamily corresponds to the
catalytic domain present in a group of uncharacterized
hypothetical proteins found in bacteria and fungi, which
are similar to eukaryotic phosphatidylinositol-specific
phospholipase C, X domain containing proteins
(PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, eukaryotic PI-PLCXDs
contain a single TIM-barrel type catalytic domain, X
domain, and are more closely related to bacterial
PI-PLCs, which participate in Ca2+-independent PI
metabolism, hydrolyzing the membrane lipid
phosphatidylinositol (PI) to produce phosphorylated
myo-inositol and diacylglycerol (DAG). Although the
biological function of eukaryotic PI-PLCXDs still
remains unclear, it may distinct from that of typical
eukaryotic PI-PLCs.
Length = 281
Score = 29.7 bits (67), Expect = 3.4
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 71 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLR--QNSLLHCINIAGVSA---FIYGA 125
D V + N E V + + N R ++ + A SA ++
Sbjct: 85 DVVTFLKANPTEIVVVHITWDGFD------NDCARPSAQEVVEALAQALASAKVGYVTSG 138
Query: 126 ELTDAVQEISTSLGSNVKLF----------SWSPDTDSSSSPVPRSQALSPLLSE 170
++D + + +L S+S + ++S P P AL+ +L+E
Sbjct: 139 TVSDLAASYAQLRQTGKRLIVLFGDADKYDSYSDEDYATSDPQPIIDALNKMLAE 193
>gnl|CDD|222164 pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions.
Length = 144
Score = 28.8 bits (65), Expect = 3.6
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 208 HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGC 253
+ G +A +G R R Y L Y + G L++
Sbjct: 76 YVLRLDGEPVAAVLGLRDGGRLYYYLGGYDPEFARLSPGLLLLWEL 121
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 29.9 bits (67), Expect = 3.8
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEV 530
GY N K+ + + + D +GD+ +D G ++ DR + ++KG V+ E+
Sbjct: 401 GYYNNKEETDRTIDE-----DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL 455
Query: 531 EGVVSNASEYRDCVV 545
E ++ D V
Sbjct: 456 EAILLTHPSVEDAAV 470
Score = 29.6 bits (66), Expect = 4.7
Identities = 65/335 (19%), Positives = 121/335 (36%), Gaps = 39/335 (11%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
LT+ D + A +KV F+ T T +V + R A + GL+KG V ++
Sbjct: 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVV 86
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 136
L N E+ + LG+ G + + N ++ + AG + D
Sbjct: 87 LPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIV----TNDTNYGKVK 142
Query: 137 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSG 195
LG V + + + LL + + +Q L + ++SG
Sbjct: 143 GLGLPVIVL--------GEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSG 194
Query: 196 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYT--PLPLYHTAGGAMCIGQALIFGC 253
TTG+ K ++++ + + +G + T +P +H G I G
Sbjct: 195 TTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG---------ITGI 245
Query: 254 C---------VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRL 304
C VV+ +F + + + + + + + L+ P E ++L
Sbjct: 246 CCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL 305
Query: 305 ----MFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
L P++ + F +F Q+ E YG TE
Sbjct: 306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE 340
>gnl|CDD|177741 PLN00130, PLN00130, succinate dehydrogenase (SDH3); Provisional.
Length = 213
Score = 29.3 bits (65), Expect = 4.4
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 124 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVG 183
GA+LT + + + +G++ +LFS ++ P+ ++ PL + P ++ +
Sbjct: 86 GAQLTRSFRALD--VGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLS 143
Query: 184 VQDKLIYIYTSGTT 197
+ +++ +Y +G T
Sbjct: 144 IFNRISGVYLTGVT 157
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 29.6 bits (67), Expect = 4.6
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 111 HCINIAGVSAFIYGAEL--TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 159
+N+A + A + AE+ ++ + ++ L +N+ LF T+ S S +P
Sbjct: 282 QSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTEQSGSFLP 332
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases
specifically expressed in nucellar cells during
degradation. Nucellins are important regulators of
nucellar cell's progressive degradation after ovule
fertilization. This degradation is a characteristic of
programmed cell death. Nucellins are plant aspartic
proteases specifically expressed in nucellar cells
during degradation. The enzyme is characterized by
having two aspartic protease catalytic site motifs, the
Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in
the C-terminal region, and two other regions nearly
identical to two regions of plant aspartic proteases.
Aspartic proteases are bilobal enzymes, each lobe
contributing a catalytic Asp residue, with an extended
active site cleft localized between the two lobes of the
molecule. One lobe may be evolved from the other through
ancient gene-duplication event. Although the
three-dimensional structures of the two lobes are very
similar, the amino acid sequences are more divergent,
except for the conserved catalytic site motif.
Length = 273
Score = 29.3 bits (66), Expect = 5.4
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 86 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 145
L LG K+ + + L + + +N + HC++ G +G +L + T + +
Sbjct: 98 LGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKK 157
Query: 146 SWSP 149
+SP
Sbjct: 158 HYSP 161
>gnl|CDD|233451 TIGR01531, glyc_debranch, glycogen debranching enzymye. glycogen
debranching enzyme possesses two different catalytic
activities; oligo-1,4-->1,4-glucantransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
directed mutagenesis studies in S. cerevisiae indicate
that the transferase and glucosidase activities are
independent and located in different regions of the
polypeptide chain. Proteins in this model belong to the
larger alpha-amylase family. The model covers eukaryotic
proteins with a seed composed of human, nematode and
yeast sequences. Yeast seed sequence is well
characterized. The model is quite rigorous; either query
sequence yields large bit score or it fails to hit the
model altogether. There doesn't appear to be any middle
ground [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 1464
Score = 29.4 bits (66), Expect = 6.9
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 23 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQG---LKK-----GDSVA 74
D E P K F+ + W S+ + +F L++ GDSV
Sbjct: 424 KDGSEEKFAYDPEKADFLMAHNGWVMG-----SDPLRDFASPGSRVYLRRELICWGDSVK 478
Query: 75 LMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE-LTDAVQ 132
L N+PE LW + + +TA I +R ++ H S I+ AE L DA +
Sbjct: 479 LRYGNKPEDSPYLWQHMKEYTEMTARIFDGVRIDN-CH-------STPIHVAEYLLDAAR 530
Query: 133 EISTSLGSNVKLFSWSPDTD 152
+ + +L +LF+ S D
Sbjct: 531 KYNPNLYVVAELFTGSETLD 550
>gnl|CDD|233809 TIGR02282, MltB, lytic murein transglycosylase B. This family
consists of lytic murein transglycosylases (murein
hydrolases) in the family of MltB, which is a
membrane-bound lipoprotein in Escherichia coli. The
N-terminal lipoprotein modification motif is conserved
in about half the members of this family. The term Slt35
describes a naturally occurring soluble fragment of
MltB. Members of this family never contain the putative
peptidoglycan binding domain described by pfam01471,
which is associated with several classes of bacterial
cell wall lytic enzymes [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 290
Score = 28.9 bits (65), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 58 VANFFLAQGLKKGDSVALMLENRP 81
VAN+F A G +GD VA+
Sbjct: 188 VANYFHAHGWVRGDPVAVPATGAA 211
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 28.9 bits (65), Expect = 7.2
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 22/58 (37%)
Query: 193 TSGTTGLPKAAVIS----------NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 240
TSGTTG PK A+++ H LGG ++ LP +H AG
Sbjct: 43 TSGTTGTPKGAMLTAAALTASADATHDR--LGGP----------GQWLLALPAHHIAG 88
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.8 bits (65), Expect = 7.9
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 184 VQDKLIYIY--TSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHT 238
V + I +SGTTG P + +A G R D+
Sbjct: 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLF 146
Query: 239 AGG 241
GG
Sbjct: 147 TGG 149
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 28.9 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 186 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGF 223
D LI G L +A I+ Y FL A A Y IGF
Sbjct: 33 DHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIGF 71
>gnl|CDD|223745 COG0673, MviM, Predicted dehydrogenases and related proteins
[General function prediction only].
Length = 342
Score = 28.7 bits (64), Expect = 8.2
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 296 EDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSR 355
+D A L F NG+ W+ E YG T+G+ + + + +
Sbjct: 217 DDSAS-AILRFENGVLAVSWASRTAAGGYDVRLEVYG-TKGSLEVDDGNPTGELLDGRIG 274
Query: 356 LIPTIYPISIIRVDPV 371
L ++ V
Sbjct: 275 LDVRGGDGELLLVPRR 290
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 28.8 bits (65), Expect = 8.3
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 HAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
H + P ++ + +TE +T +Q+ NR+A + G+++GD V + + E
Sbjct: 62 HLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAE 121
Query: 83 FVCLWLGLSKLGVI 96
L +++G I
Sbjct: 122 AAFAMLACARIGAI 135
>gnl|CDD|221320 pfam11927, DUF3445, Protein of unknown function (DUF3445). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 264 to 418
amino acids in length. This protein has a conserved RLP
sequence motif. This protein has two completely
conserved R residues that may be functionally important.
Length = 245
Score = 28.3 bits (64), Expect = 8.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 209 RYYFLGGAIAYQIGFRTKDRF-------YTPLPLYHT 238
Y+ GA+ + G+ D+ + P+P Y
Sbjct: 117 EYFLRAGAVCFPAGWSLADKIGMPLSEIHGPVPGYKE 153
>gnl|CDD|153090 cd08025, RNR_PFL_like_DUF711, Uncharacterized proteins with
similarity to Ribonucleotide reductase and Pyruvate
formate lyase. This subfamily contains Streptococcus
pneumoniae Sp0239 and similar uncharacterized proteins.
Sp0239 is structurally similar to ribonucleotide
reductase (RNR) and pyruvate formate lyase (PFL), which
are believed to have diverged from a common ancestor.
RNR and PFL possess a ten-stranded alpha-beta barrel
domain that hosts the active site, and are radical
enzymes. RNRs are found in all organisms and provide the
only mechanism by which nucleotides are converted to
deoxynucleotides. PFL is an essential enzyme in
anaerobic bacteria that catalyzes the conversion of
pyruvate and CoA to acteylCoA and formate.
Length = 400
Score = 28.8 bits (65), Expect = 9.3
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLG-----VITALINHNLRQNSLLHCINIAG 117
LA GDSVA +LE +GL ++G AL+N +++ + + G
Sbjct: 270 LAPTPAVGDSVAEILEE--------MGLERVGTHGTTAALALLNDAVKKGGAMATSRVGG 321
Query: 118 VS-AFIYGAE---LTDAVQEISTSL 138
+S AFI +E + +AV+E + +L
Sbjct: 322 LSGAFIPVSEDAGMIEAVREGALTL 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,293,417
Number of extensions: 2779568
Number of successful extensions: 2677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2508
Number of HSP's successfully gapped: 350
Length of query: 548
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 446
Effective length of database: 6,413,494
Effective search space: 2860418324
Effective search space used: 2860418324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)