RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9226
(548 letters)
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 183 bits (467), Expect = 9e-52
Identities = 84/381 (22%), Positives = 142/381 (37%), Gaps = 36/381 (9%)
Query: 15 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 74
++ D T+AD++R +A P++ FM + T + A + R+A+ L G+ GD VA
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 75 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 134
++ +N E + L ++ +G I +N+ L + + + S + G + D V +
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 194
SLG K ++ + + L S+ P S P G D + I+T+
Sbjct: 121 LPSLGGVKKAYAIGDGSGPFAP-------FKDLASDTPFSAP----EFGAADGFVIIHTA 169
Query: 195 GTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 254
G P+ A+IS ++ D LPL+H G + + G
Sbjct: 170 AVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT-LQQAGGA 228
Query: 255 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 314
VI KF + D+ +K TV M +L P A +R + G P+
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-PAQLAS-LRAVTG-LDTPET 285
Query: 315 WSEFVDRFRIAQIGEFYGATE--GNANIANIDNQPGAIGFVSRLIPTIYPISIIR-VDPV 371
F A +G +E G + A ++P + G + VD
Sbjct: 286 IERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGRP-------LFWRTVAVVDAE 338
Query: 372 TSEPIRNKKGLCTRCEPGEPG 392
PGE G
Sbjct: 339 DRP-----------LPPGEVG 348
Score = 43.7 bits (104), Expect = 1e-04
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 494 FLSGDLLVMDKWGYLYFKDR--------TGDTFRWKGENVSTCEVEGVVSNASEYRDCVV 545
+GD+ D GYL++ R TG GENV EVEG + D VV
Sbjct: 377 HHTGDMGRFDADGYLFYAGRAPEKELIKTG------GENVYPAEVEGALKQHPAIADAVV 430
Query: 546 YGV 548
GV
Sbjct: 431 IGV 433
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 180 bits (460), Expect = 2e-50
Identities = 75/433 (17%), Positives = 142/433 (32%), Gaps = 58/433 (13%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
A K ++ + T ++E + R A+ G+ + + L++
Sbjct: 22 LFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVML 81
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
+ +LG GV+ + N L ++ + + A I L V + S
Sbjct: 82 DTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA 141
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 194
+ S +S P + L +P T D ++Y+S
Sbjct: 142 EHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC---------DDIAFWLYSS 192
Query: 195 GTTGLPKAAVISNHRYYFLG--GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
G+TG PK V + H + +G D ++ L+ G + L G
Sbjct: 193 GSTGKPKGTVHT-HANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251
Query: 253 -CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDKAHNVRLM 305
+++ ++ +A F+ + +++ TV +L +P P +R+
Sbjct: 252 ATAILMAERPTADAIFARLVEHRPTV------FYGVPTLYANMLVSPNLPARADVAIRIC 305
Query: 306 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN---IDNQPGAIGFVSRLIPTI 360
G L +I F F +I + G+TE + + G G R +P
Sbjct: 306 TSAGEALPREIGERFTAHFGC-EILDGIGSTEMLHIFLSNRAGAVEYGTTG---RPVPG- 360
Query: 361 YPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKD-SAKK 419
Y I + D GE +G + P+ A + Y N ++ S
Sbjct: 361 YEIEL--RDEAGHA-----------VPDGE----VGDLYIKGPSAA-VMYWNNREKSRAT 402
Query: 420 IVTDVFEIGDSAF 432
+ + GD
Sbjct: 403 FLGEWIRSGDKYC 415
Score = 41.0 bits (97), Expect = 9e-04
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
G +G + P+ A + Y N ++ ++ + SGD G +
Sbjct: 373 VPDGE-VGDLYIKGPSAA-VMYWNNREKSRATFLGEW------IRSGDKYCRLPNGCYVY 424
Query: 511 KDRTGDTFRWKGENVSTCEVEGV 533
R+ D + G+ VS EVE V
Sbjct: 425 AGRSDDMLKVSGQYVSPVEVEMV 447
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 176 bits (448), Expect = 5e-49
Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 20/320 (6%)
Query: 20 LTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
I + R+ A SP + + T Q+ A +NR A+ A G+ KGD VAL++
Sbjct: 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLM 75
Query: 78 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
N EF CL+ G +KLG + IN L + ++ +G IYGA + I
Sbjct: 76 PNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQ 135
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
+ DS L+ L P++ G D L +YTSGTT
Sbjct: 136 ADP-PGTVTDWIGADS----------LAERLRSAAADEPAV--ECGGDDNLFIMYTSGTT 182
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
G PK V ++ + + A I R +DR PLP++H A I + + G ++
Sbjct: 183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIF-SAMRGVTLIS 241
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 315
+F A+ +S + + + +G + + ++ PE E A + R G + +
Sbjct: 242 MPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALI 301
Query: 316 SEFVDRFRIAQIGEFYGATE 335
+ + ++ + Y TE
Sbjct: 302 KIYAAKN--IEVVQGYALTE 319
Score = 43.7 bits (104), Expect = 1e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD+ +D GYLY KDR D GENV E+E V+ + V G+
Sbjct: 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGL 446
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 174 bits (443), Expect = 3e-48
Identities = 84/379 (22%), Positives = 140/379 (36%), Gaps = 45/379 (11%)
Query: 23 ADIFREHAVRSPNKV-IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 81
+ P+K+ I + + ++ A + RVAN +A+GL+ GD VA E
Sbjct: 6 FARLFDKL-DDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV 64
Query: 82 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 141
E + L+L + G + +N + L + I A + D + I+ +G
Sbjct: 65 EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-- 122
Query: 142 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 201
+ + PD S L+ + + ++ G D +YTSGTTG K
Sbjct: 123 ATVETLGPDGRGS---------LTDAAAGASEAFATID--RGADDLAAILYTSGTTGRSK 171
Query: 202 AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF 261
A++S+ + F D LP+YHT G + L ++ KF
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF 231
Query: 262 SASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSE 317
+ + TV +G LL +P ++ ++RL L E
Sbjct: 232 DPDKILDLMA--RATV--LMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHRE 287
Query: 318 FVDRFRIAQIGEFYGATEGNANIANIDNQ---PGAIGFVSRLIPTIYPISIIR-VDPVTS 373
+ + A + E YG TE N N +N + PGA+G +P + R DP T
Sbjct: 288 WSAKTGHA-VLERYGMTETNMNTSNPYDGDRVPGAVGPA---LPGVS----ARVTDPETG 339
Query: 374 EPIRNKKGLCTRCEPGEPG 392
+ G+ G
Sbjct: 340 KE----------LPRGDIG 348
Score = 39.5 bits (93), Expect = 0.003
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F++GDL +D+ GY++ R D G NV E+E + + V GV
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGV 432
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 167 bits (426), Expect = 5e-46
Identities = 54/341 (15%), Positives = 121/341 (35%), Gaps = 20/341 (5%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
+++ + A ++ + + +T Q + ++ +A + V L ++N
Sbjct: 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDN 57
Query: 80 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 139
+ + L + A+IN L N + + + V L +I +
Sbjct: 58 SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD 117
Query: 140 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 199
+ + ++ + + + + L+ + D ++TSGTTG
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177
Query: 200 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 259
KA + +Y +GF + + LP+YH +G ++ + A+I G V I
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR-AVIEGFTVRIVD 236
Query: 260 KFSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 315
KF+A + + + T + +L+ ++ + +N++ + G L +
Sbjct: 237 KFNAEQILTMIKNERITH--ISLVPQTLNWLM---QQGLHEPYNLQKILLGGAKLSATMI 291
Query: 316 SEFVDRFRIAQIGEFYGATE--GNANIANIDNQ---PGAIG 351
+ I +G TE A + P +G
Sbjct: 292 ETALQYN--LPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330
Score = 44.1 bits (105), Expect = 9e-05
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD+ +D GY+ DR D GEN+ ++E V D V G
Sbjct: 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGH 431
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 163 bits (416), Expect = 1e-44
Identities = 75/387 (19%), Positives = 127/387 (32%), Gaps = 53/387 (13%)
Query: 21 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTT 197
G+ + S P + + P + +I YTSGTT
Sbjct: 123 GARIIFLGDLVRDGEPYSY-------GPPIEDPQREP----------AQPAFIFYTSGTT 165
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 255
GLPKAA+I ++ Q+G R + +PLYH G + AL
Sbjct: 166 GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
Query: 256 VIRKKFSASNYFSDVCKYKCTVG-----QYIGEMCRYLLSTPEKPEDKA--HNVRLMFGN 308
V+ ++F + V + + T L + ++R +
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDA-----LAAAAAHAGSSLKLDSLRHVTFA 280
Query: 309 G--LRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISII 366
G + + ++ YG TE ++ + G S +
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEM-------APGFFSEV 332
Query: 367 R-VDPVTSEPIRNKKGLCTRCEPGEPG 392
R V G+ GE G
Sbjct: 333 RIVRIGG--------GVDEIVANGEEG 351
Score = 42.9 bits (102), Expect = 2e-04
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ + D+ V G + R D GEN+ E+E V+ A + VV G+
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 159 bits (405), Expect = 8e-43
Identities = 75/412 (18%), Positives = 140/412 (33%), Gaps = 49/412 (11%)
Query: 10 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 62
W+ R D + I P+ + + + + +++ S +A
Sbjct: 13 WSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRL 72
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 122
+GL KGD+ + L N EF ++ L K GV+ ++ RQ L I I
Sbjct: 73 AEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132
Query: 123 Y-----GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 177
+ + S ++ + + + + + ++P
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLS-PEIILMLNHQATDFGLLDWIETPAETFVDFSSTPA- 190
Query: 178 LSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 236
D++ + + G+TG PK +++ Y + A A G + R LP
Sbjct: 191 --------DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAP 242
Query: 237 HTAG----GAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP 292
H GA+ L G CVV+ N FS + +++ + + L
Sbjct: 243 HNFMLSSPGALG---VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA 299
Query: 293 EKPEDKAHNVRL--MFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANID----NQ 346
+ +D+ +++L + G + + + ++ + +G EG N +D
Sbjct: 300 AQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRLDDSDEQI 358
Query: 347 PGAIGFVSRLIPTIYPISIIR-VDPVTSEPIRNKKG-LCTRCEPGEPGVFIG 396
G R I I+ VD E + G L TR G P F G
Sbjct: 359 FTTQG---RPIS---SDDEIKIVDEQYREVPEGEIGMLATR---G-PYTFCG 400
Score = 39.8 bits (94), Expect = 0.002
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ SGDL+ G L R D GE +++ E+E ++ E + +
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAI 472
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 154 bits (391), Expect = 6e-41
Identities = 49/265 (18%), Positives = 100/265 (37%), Gaps = 19/265 (7%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQE 133
N EF + L +LG + + R + + + A +A+I G + ++
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQ 143
Query: 134 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 193
+ + L + + + L ++ T P L V D +
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLP------------LEDLHTEPVKLP-EVKSSDVAFLQLS 190
Query: 194 SGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC-IGQALIFG 252
G+TGL K ++ Y + + LP+ H + + L G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250
Query: 253 CCVVIRKKFSASNYFSDVCKYKCTV 277
VV+ S + F + + K T+
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTI 275
Score = 40.6 bits (96), Expect = 0.001
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ +GD++ + + GY+ + R D GE V+ EVE + D + +
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSM 463
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 154 bits (391), Expect = 2e-40
Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 23/267 (8%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
DL + DI HA + + + + + + +++ ++ +A QG+K G++ + L
Sbjct: 26 DLPLTDILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLG 83
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQE 133
N E + L KLGV L + +++ L + + I + D +
Sbjct: 84 NVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNT 143
Query: 134 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-Y 192
T S + + + + A + P+ D++ Y
Sbjct: 144 FVTEHSSIRVVQLLNDSGEHNLQDAINHPA--EDFTATPSPA----------DEVAYFQL 191
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALI 250
+ GTTG PK +++ YY+ F + R+ +P H G +
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY-AMSSPGSLGVFL 250
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTV 277
G VV+ SA+ F + K++ V
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNV 277
Score = 39.2 bits (92), Expect = 0.003
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ SGDL+ +D GY+ + R D GE ++ E+E ++ + +
Sbjct: 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 150 bits (382), Expect = 1e-39
Identities = 93/458 (20%), Positives = 155/458 (33%), Gaps = 68/458 (14%)
Query: 4 RYLRFLWAARRVAQKDLTIA-DIFREHAV-----RSPNKVIFMFEN-----TEWTAQQVE 52
+ + W + V K A D+ A + P + N W +++
Sbjct: 22 QSMSLQWGHQEVPAK-FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELS 80
Query: 53 AYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 111
S + AN A GL++GD VA++L PE+ + LG + G+I ++ +L+
Sbjct: 81 ENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILY 140
Query: 112 CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 171
+ ++ A + G E+ V +++ S S LL+E
Sbjct: 141 RLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK------SCDGWLNFKKLLNEA 194
Query: 172 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGFRTKDRFY 230
T+ + G Q+ +TSGT+GLPK A S + L + G + D +
Sbjct: 195 STTHHCV--ETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWTGLQASDIMW 251
Query: 231 TPLPL---YHTAGGAMCIGQALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC 285
T + M G C + KF + Y M
Sbjct: 252 TISDTGWILNILCSLME---PWALGACTFVHLLPKFDPLVILKTLSSYPIKS------MM 302
Query: 286 ------RYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGN 337
R LL H ++ G L P+ + + + I E YG TE
Sbjct: 303 GAPIVYRMLLQQDLSSYKFPH-LQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTETG 360
Query: 338 ANIAN---IDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVF 394
+ +PG +G Y + I +D + PG G
Sbjct: 361 LTCMVSKTMKIKPGYMG---TAASC-YDVQI--IDDKGNV-----------LPPGTEGDI 403
Query: 395 IGKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSA 431
++ P P + GYV+ D +A I D + +GD
Sbjct: 404 GIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441
Score = 38.8 bits (91), Expect = 0.005
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 451 CEPGVFIGKIV----PSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWG 506
PG G I P P + GYV+ D + F +L GD + D+ G
Sbjct: 395 LPPGT-EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDG 447
Query: 507 YLYFKDRTGDTFRWKGENVSTCEVE 531
Y F R D G + EVE
Sbjct: 448 YFQFMGRADDIINSSGYRIGPSEVE 472
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 150 bits (380), Expect = 2e-39
Identities = 81/399 (20%), Positives = 141/399 (35%), Gaps = 59/399 (14%)
Query: 18 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 75
K+L + E+ +K I +T VE + RVA+ G+++GD + L
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIML 79
Query: 76 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 135
L + PEFV +LG S G I N L + I A + V++ +
Sbjct: 80 FLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139
Query: 136 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTS 194
V S S L P + D ++ + Y+S
Sbjct: 140 RESDVKVMCV---------DSAPDGCLHFSELTQADENEAPQVDIS---PDDVVALPYSS 187
Query: 195 GTTGLPKAAVISNHRYYF-----LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 249
GTTGLPK +++ H+ + F ++D LP++H + L
Sbjct: 188 GTTGLPKGVMLT-HKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246
Query: 250 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQ-----YIGEMCRYLLSTPEKPEDKAHNVRL 304
G ++I KF + + KYK ++ + + +P+ + ++R+
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS-----IAKSPDLDKHDLSSLRM 301
Query: 305 MFGNG--LRPQIWSEFVDRFRIAQIGEFYGATE------GNANIANIDNQ--PGAIGFVS 354
+ G L ++ +F A++G+ YG TE A PGA G
Sbjct: 302 IKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACG--- 358
Query: 355 RLIPTIYPISIIR-VDPVTSEPIRNKKGLCTRCEPGEPG 392
++ ++ VDP T + +PG
Sbjct: 359 TVVRNAE----MKIVDPETGASL----------PRNQPG 383
Score = 34.8 bits (81), Expect = 0.066
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 470 LGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GY+N + +++ I + + +GD+ +D L+ DR + ++KG V+
Sbjct: 394 KGYLNDPEATSRTIDKEGW------LHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA 447
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E ++ E D V G+
Sbjct: 448 ELEALLIAHPEISDAAVVGL 467
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 146 bits (370), Expect = 2e-38
Identities = 67/392 (17%), Positives = 110/392 (28%), Gaps = 65/392 (16%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
+ ++ F T ++ A + A + VA+
Sbjct: 24 LFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPA 78
Query: 81 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 140
E + GV +N L H ++ + S +
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVL------------------ 120
Query: 141 NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLP 200
+ P AL + +V D + +YTSGTTG P
Sbjct: 121 ----------APPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPP 170
Query: 201 KAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 260
K AVI A+A + +D LPL+H G + I L G V +
Sbjct: 171 KGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230
Query: 261 FSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAH---NVRLMFGNG--LRPQ 313
FS ++ T+ G M + T + A RL+ L
Sbjct: 231 FSTEGAAREL-NDGATM--LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVH 287
Query: 314 IWSEFVDRFRIAQIGEFYGATEGNANIAN---IDNQPGAIGFVSRLIPTIYPISIIR-VD 369
++ E YG TE N + + + G +G +P + +R V+
Sbjct: 288 DHERIAAATG-RRVIERYGMTETLMNTSVRADGEPRAGTVGVP---LPGV----ELRLVE 339
Query: 370 PVTSEPIRNKKGLCTRCEPGE-----PGVFIG 396
+ GE P +F
Sbjct: 340 EDGTPIAALDGE-----SVGEIQVRGPNLFTE 366
Score = 39.5 bits (93), Expect = 0.003
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTG-DTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
F +GD+ V D GY+ R D + G + E+E + E R+ V G
Sbjct: 384 FRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 146 bits (371), Expect = 4e-38
Identities = 76/389 (19%), Positives = 136/389 (34%), Gaps = 36/389 (9%)
Query: 19 DLTIADIFREHAVR---SPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSV 73
D T + + R P + F + T + S R+A GL +
Sbjct: 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 74 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 133
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 138
Query: 134 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV---QDKLIY 190
+ L K+ DS + + + S +P + +
Sbjct: 139 VQKKLPIIQKIII----MDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIAL 194
Query: 191 I-YTSGTTGLPKAAVISNHR----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 245
I +SG+TGLPK + HR + + + +P +H G +
Sbjct: 195 IMNSSGSTGLPKGVALP-HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253
Query: 246 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 305
G LI G VV+ +F + + YK + + + + + N+ +
Sbjct: 254 G-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 312
Query: 306 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE----GNANIANIDNQPGAIGFVSRLIPT 359
G L ++ RF + I + YG TE D++PGA+G +++P
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-DDKPGAVG---KVVPF 368
Query: 360 IYPISIIR-VDPVTSEPI-RNKKG-LCTR 385
+ VD T + + N++G LC R
Sbjct: 369 FE----AKVVDLDTGKTLGVNQRGELCVR 393
Score = 37.2 bits (87), Expect = 0.014
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 470 LGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GYVN + + I D + SGD+ D+ + + DR ++KG V+
Sbjct: 399 SGYVNNPEATNALIDKDGW------LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 452
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E ++ D V G+
Sbjct: 453 ELESILLQHPNIFDAGVAGL 472
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 141 bits (358), Expect = 2e-36
Identities = 80/427 (18%), Positives = 148/427 (34%), Gaps = 53/427 (12%)
Query: 19 DLTIADIFREHAVRSPN--KVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVA 74
+ + R++ R + F T +++ + S + GL +A
Sbjct: 22 EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 75 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 134
L EN EF + +GV A N L+H + I+ + + D V +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV----QDKLIY 190
++ + + S Q L + S V ++++
Sbjct: 142 QKTVTTIKTIV-----ILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVAL 196
Query: 191 I-YTSGTTGLPKAAVISNHRYY----FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 245
I +SG+TGLPK ++ H Y T +P +H G +
Sbjct: 197 IMNSSGSTGLPKGVQLT-HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTL 255
Query: 246 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 305
G LI G VV+ KF + + YKCT + + L + + N+ +
Sbjct: 256 G-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 306 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE----GNANIANIDNQPGAIGFVSRLIPT 359
G L ++ RF + + + YG TE D++PGA G +++P
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DDKPGASG---KVVPL 370
Query: 360 IYPISIIR-VDPVTSEPI-RNKKG-LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDS 416
+ +D T + + N++G +C + G P + G Y+ N + +
Sbjct: 371 FK----AKVIDLDTKKSLGPNRRGEVCVK---G-PMLMKG----------YVN--NPEAT 410
Query: 417 AKKIVTD 423
+ I +
Sbjct: 411 KELIDEE 417
Score = 37.6 bits (88), Expect = 0.009
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 470 LGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GYVN + + + I + + +GD+ D+ + + DR ++KG V
Sbjct: 401 KGYVNNPEATKELIDEEGW------LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPA 454
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E V+ D V GV
Sbjct: 455 ELESVLLQHPSIFDAGVAGV 474
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 139 bits (353), Expect = 1e-35
Identities = 68/439 (15%), Positives = 150/439 (34%), Gaps = 69/439 (15%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENT--------EWTAQQVEAYSNRVANFFLAQGLKKG 70
+++AD A + K + ++ + ++A+ +G++KG
Sbjct: 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77
Query: 71 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 130
+ V + + N ++V L ++ IN + L H +N + + + + L +
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 190
+ + G ++F + +S LS ++ ++ V ++ +
Sbjct: 138 FKPVLEKTGV-ERVFVVGGEVNS----------LSEVMDSGSEDFENVK--VNPEEDVAL 184
Query: 191 I-YTSGTTGLPKAAVISNHRYYFLGGAIAYQI----GFRTKDRFYTPLPLYHTAGGAMCI 245
I YT GTTG+PK +++ H A A Q+ G D +P++H + +
Sbjct: 185 IPYTGGTTGMPKGVMLT-HFNLA---ANALQLAVATGLSHMDTIVGCMPMFH-SAEFGLV 239
Query: 246 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--NVR 303
+ G V+ F+ ++ KYK T + L++T E ++
Sbjct: 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299
Query: 304 LMFGNG--LRPQIWSEFVDRF------RIAQIGEFYGATE----GNANIANIDNQPGAIG 351
+ + P + + + + + +G TE N ++ G
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQG 359
Query: 352 FVSRLIPTIYPISIIRVDPVTSEPI-RNKKG-LCTRCEPGEPGVFIGKIVPSNPARAYLG 409
+ I + + + + + G + R G P +F G Y
Sbjct: 360 ---VPMSDIE-LKV--ISLEDGRELGVGESGEIVIR---G-PNIFKG----------YWK 399
Query: 410 YVNEKDSAKKIVTDVFEIG 428
EK++ + D
Sbjct: 400 --REKENQECWWYDEKGRK 416
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 471 GYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
GY EK++ + D E G F +GD+ +D+ G+L+F+DR + ++KG ++ E
Sbjct: 396 GYWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453
Query: 530 VEGVVSNASEYRDCVVYGV 548
+E ++ D V G
Sbjct: 454 LEALLMKHEAVMDVAVIGK 472
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 139 bits (351), Expect = 7e-35
Identities = 74/388 (19%), Positives = 134/388 (34%), Gaps = 31/388 (7%)
Query: 18 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 75
L++ D ++ K I +T V S ++A F G+ + D V L
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVML 118
Query: 76 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 135
+L N PEFV +L S G N + + I A D ++ +
Sbjct: 119 LLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQ 178
Query: 136 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 195
G + + + ++ + D + Y+SG
Sbjct: 179 NDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSG 235
Query: 196 TTGLPKAAVISNHR-----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
TTGLPK +++ H+ + F + D LP++H + L
Sbjct: 236 TTGLPKGVMLT-HKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLR 294
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 309
G ++I KF + + + K TV + + + + E + ++R++
Sbjct: 295 VGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354
Query: 310 -LRPQIWSEFVDRFRIAQIGEFYGATE--------GNANIANIDNQPGAIGFVSRLIP-T 359
L ++ +F A++G+ YG TE + GA G ++
Sbjct: 355 PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACG---TVVRNA 411
Query: 360 IYPISIIRVDPVTSEPI-RNKKG-LCTR 385
I VDP T + + RN+ G +C R
Sbjct: 412 EMKI----VDPDTGDSLSRNQPGEICIR 435
Score = 33.5 bits (77), Expect = 0.20
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 470 LGYVN-EKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTC 528
GY+N +A+ I D + +GD+ ++D L+ DR + ++KG V+
Sbjct: 441 KGYLNNPAATAETIDKDGW------LHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPA 494
Query: 529 EVEGVVSNASEYRDCVVYGV 548
E+E ++ + D V +
Sbjct: 495 ELEALLIGHPDITDVAVVAM 514
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 133 bits (336), Expect = 2e-33
Identities = 92/439 (20%), Positives = 162/439 (36%), Gaps = 69/439 (15%)
Query: 24 DIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
D+ +A SP K+ ++ + +T + ++ YS++ ANFF+ G+ KGD V L L+
Sbjct: 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 136
+R +F LGL KLG I H L+ +++ I AG+ + ++ + V E
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179
Query: 137 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYRVGVQDKLIYIYTS 194
G + L E P+ +D + ++S
Sbjct: 180 ECGDIPLKK-----AKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234
Query: 195 GTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTA-----GGAM-CIG 246
GT G PK + Y + A Y YT A +
Sbjct: 235 GTAGFPKMVEHD-NTYPLGHILTA-KYWQNVEDDGLHYT------VADSGWGKCVWGKLY 286
Query: 247 QALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDK 298
I GC V + +F A N KY T C R+L+ +
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT------FCAPPTIYRFLIKEDLSHYNF 340
Query: 299 AHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGNANIAN---IDNQPGAIGFV 353
+ ++ G L P++++ F++ I ++ E +G TE IA ++ +PG+IG
Sbjct: 341 ST-LKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGFGQTETVVTIATFPWMEPKPGSIGK- 397
Query: 354 SRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNE 413
P +++ + ++ G CE GE G + + P ++ Y +
Sbjct: 398 --------PTPGYKIE------LMDRDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKD 441
Query: 414 KDS-AKKIVTDVFEIGDSA 431
+ + + GD A
Sbjct: 442 PERTEETWHDGYYHTGDMA 460
Score = 32.1 bits (74), Expect = 0.57
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 451 CEPGVFIGKIV----PSNPARAYLGYVNEKDS-AKKIVTDVFEIGDSAFLSGDLLVMDKW 505
CE G G+IV P ++ Y + + + + +GD+ MD+
Sbjct: 414 CEVGE-EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYY-------HTGDMAWMDED 465
Query: 506 GYLYFKDRTGDTFRWKGENVSTCEVE 531
GYL+F R D + G V EVE
Sbjct: 466 GYLWFVGRADDIIKTSGYKVGPFEVE 491
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 91.6 bits (228), Expect = 1e-19
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 21 TIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
++ D+ R A+ SPNK F T +Q++ ++ +A A+G K GD V L+
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLL 71
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--AFIYGAELTDA--VQ 132
+ +LG G I I ++ L I S + L A ++
Sbjct: 72 FAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV----LMIADHIK 127
Query: 133 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 192
+ + + F P S + RS + P +++ +Q Y
Sbjct: 128 KFTADELNTNPKFLKIPAIALESIELNRSSSWQP----TSIKSNDIAF---LQ------Y 174
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
TSG+T PK ++S+H I + ++ LP +H G CI + G
Sbjct: 175 TSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234
Query: 253 CCVVI 257
++
Sbjct: 235 IQAIM 239
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 89.7 bits (223), Expect = 4e-19
Identities = 51/248 (20%), Positives = 78/248 (31%), Gaps = 31/248 (12%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEW---TAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
T+ D A+ S + Q ++A + A L+ LKKGD VAL+
Sbjct: 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81
Query: 78 ENRPEFVCLWLGLSKLGVI-------TALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 130
E EFV + G++ + + L + +A I G E
Sbjct: 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPL 141
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 190
V + P LS + R D
Sbjct: 142 VNAATHDN--------------------PELHVLSHAWFKALPEADVALQRPVPNDIAYL 181
Query: 191 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLPLYHTAGGAMCIGQAL 249
YTSG+T P+ +I++ AI++ I R DR + LP YH G + +
Sbjct: 182 QYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPV 241
Query: 250 IFGCCVVI 257
V
Sbjct: 242 ATQLSVDY 249
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 84.7 bits (210), Expect = 1e-17
Identities = 46/255 (18%), Positives = 77/255 (30%), Gaps = 36/255 (14%)
Query: 21 TIADIFREHAVRSPNKVIFMF---------ENTEWTAQQVEAYSNRVANFFLAQGLKKGD 71
++ R A P+ F F T Q+ + VA L++ GD
Sbjct: 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQE-LSRCGSTGD 83
Query: 72 SVALMLENRPEFVCLWLGLSKLGVI---TALINHNLRQNSLLHCINIAGVSAFIYGAELT 128
V + E+V +LG + G I ++ + ++ + A + +
Sbjct: 84 RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV 143
Query: 129 DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 188
D V + D +P + PS +Y +Q
Sbjct: 144 DDVVQHVARRPGESPPSIIEVDLLDLDAPNG--------YTFKEDEYPSTAY---LQ--- 189
Query: 189 IYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 242
YTSG+T P V+S N G + LP YH G
Sbjct: 190 ---YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLV 246
Query: 243 MCIGQALIFGCCVVI 257
+ I ++ G V+
Sbjct: 247 IGICAPILGGYPAVL 261
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 71.0 bits (175), Expect = 3e-13
Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 50/331 (15%)
Query: 21 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 80
+ D + A + ++ T Q++ S+ +A F + L V +
Sbjct: 5 DMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT 64
Query: 81 PEFVCLWLGLSKLGVITA----L-INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 135
+ + + + + + ++ + +L I IA S I E ++ IS
Sbjct: 65 YDML---ATF--VALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS 119
Query: 136 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 195
+ + + Y + I+TSG
Sbjct: 120 LVS---LSEIESAKLAEMPYERTH------------SVKGDDNYY-I--------IFTSG 155
Query: 196 TTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQAL 249
TTG PK IS H + + + M L
Sbjct: 156 TTGQPKGVQIS-HDNLLSFTNWMIEDAAFDVPKQPQM----LAQPPYSFDLSVMYWAPTL 210
Query: 250 IFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 306
G + K ++ + + + + + + + K + +
Sbjct: 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270
Query: 307 --GNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
G L + +RF A+I YG TE
Sbjct: 271 FDGEELTVSTARKLFERFPSAKIINAYGPTE 301
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 67.5 bits (166), Expect = 4e-12
Identities = 52/340 (15%), Positives = 105/340 (30%), Gaps = 66/340 (19%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 79
+ + + + A +P++ F++ + + T +Q++ S+ +A++ ++ + +
Sbjct: 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHM 60
Query: 80 RPEFVCLWLGLSKLGVITA------L--------INHNLRQNSLLHCINIAGVSAFIYGA 125
+PE + + LG + A + + +G
Sbjct: 61 QPEMI---INF--LGCVKAGHAYIPVDLSIPADRVQRIAEN---------SGAKLL---- 102
Query: 126 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 185
L+ ++ V D + +P E Y
Sbjct: 103 -LSATAVTVTDLPVRIVSE-----DNLKDIFFTHKGNTPNP---EHAVKGDENFY----- 148
Query: 186 DKLIYIYTSGTTGLPKAAVISNHR--YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG--- 240
+I YTSG+TG PK I+ + F A+ +T F
Sbjct: 149 --II--YTSGSTGNPKGVQIT-YNCLVSFTKWAVED-FNLQTGQVF----LNQAPFSFDL 198
Query: 241 GAMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPED 297
M I +L+ G + K + + + V L E
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSES 258
Query: 298 KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
N++ G L ++ + ++RF A I YG TE
Sbjct: 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 68.0 bits (167), Expect = 4e-12
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 49/213 (23%)
Query: 10 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 69
A + + F+E +P+ + + ++++ +NR+A G K
Sbjct: 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGK 513
Query: 70 GDSVALMLENRPEFVCLWLGLSKLG---V----------ITALINHNLRQNSLLHCINIA 116
G VAL + E V LG+ K G + I+ ++ +
Sbjct: 514 GSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLAD-------------S 560
Query: 117 GVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 176
+ + E+ + E+ + LF + P P
Sbjct: 561 AAACLLTHQEMKEQAAELPYTG---TTLFIDDQTRFEEQASDP----------ATAIDPN 607
Query: 177 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 209
+Y + +YTSGTTG PK + + H
Sbjct: 608 DPAY-I--------MYTSGTTGKPKGNITT-HA 630
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 64.8 bits (159), Expect = 3e-11
Identities = 52/339 (15%), Positives = 97/339 (28%), Gaps = 65/339 (19%)
Query: 20 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS-VALMLE 78
+ + + HA P F + T Q++ S+R A + + S + +
Sbjct: 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGH 60
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI-----YGAE-----LT 128
P + + LG ++ AG +I +E +
Sbjct: 61 MEPHMI---VSF--LGS--------VK----------AG-HPYIPVDLSIPSERIAKIIE 96
Query: 129 DA-VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 187
+ + + + G ++ T S+ + + Y
Sbjct: 97 SSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQ--DQWVKEHETFY------- 147
Query: 188 LIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---G 241
+I YTSG+TG PK IS + + + F
Sbjct: 148 II--YTSGSTGNPKGVQIS-AANLQSFTDWICADFPVS--GGKIF----LNQAPFSFDLS 198
Query: 242 AMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDK 298
M + L G + K + + + + K V + L P +D
Sbjct: 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL 258
Query: 299 AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 335
+ G L + ++RF A+I YG TE
Sbjct: 259 LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 63.3 bits (155), Expect = 1e-10
Identities = 48/233 (20%), Positives = 76/233 (32%), Gaps = 35/233 (15%)
Query: 20 LTIADIFREHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 74
L + D E A K + E T +V + R+ A G+ GD VA
Sbjct: 18 LNLWDFL-ERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 76
Query: 75 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 134
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 77 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 136
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP-------SLSYRVGVQDK 187
L V+ F + A L E ++
Sbjct: 137 RGEL-KTVQHFVVMDEKA-----PEGYLAYEEALGEEADPVRVPERAACGMA-------- 182
Query: 188 LIYIYTSGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYH 237
YT+GTTGLPK V S HR L ++ KD +P++H
Sbjct: 183 ----YTTGTTGLPKGVVYS-HRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 494 FLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCEVEGVVS 535
F +GD+ V D+ GY+ KDR D + GE +S+ ++E +
Sbjct: 414 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 58.7 bits (143), Expect = 3e-09
Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 57/221 (25%)
Query: 3 QRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 62
+ +R + T+ F E A P++ +Q+ + +++++
Sbjct: 10 KAIVRMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYL 69
Query: 63 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA------L--------INHNLRQNS 108
L + G + + E E + L L ++ + + RQ
Sbjct: 70 LEHYPQPGVCLGVYGEYSRESI---TCL--LAILLSGHHYLYIDLKQPAAWNAELCRQ-- 122
Query: 109 LLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 168
+ + + P P + P
Sbjct: 123 -------VDCRLILDCSTTPTPANGL--------------PCVPVRHLPAAPASVARP-- 159
Query: 169 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 209
+ ++Y + + +SGTTG PKA + H
Sbjct: 160 ---CFAADQIAY-------INF--SSGTTGRPKAIACT-HA 187
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 51.9 bits (125), Expect = 4e-07
Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 59/216 (27%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENT----------EWTAQQVEAYSNRVANFFLAQGL 67
+ + A P +WT +++ +N+VAN + L
Sbjct: 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL 77
Query: 68 KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI----- 122
G ++A+ L+ + +G+ ++ +G + ++
Sbjct: 78 -HGRAIAVSLDRSLIAF---AII--VGI--------MK----------SG-NTYVPIEAG 112
Query: 123 YGAE-----LTDAVQEI---STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 174
+ L D+ + + V+L + D+ + + + +
Sbjct: 113 LPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNY 172
Query: 175 PPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 209
P +L Y +YTSG+TG PK +S
Sbjct: 173 PENL---------DAYLLYTSGSTGTPKGVRVS-RH 198
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 47.9 bits (115), Expect = 6e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 96
Query: 78 ENRPEFV 84
E +
Sbjct: 97 EKSIDLF 103
Score = 37.5 bits (88), Expect = 0.010
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 188 LIY-IYTSGTTGLPKAAVISNHR 209
L Y IYTSGTTG PK ++ H+
Sbjct: 184 LAYVIYTSGTTGNPKGTMLE-HK 205
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 46.3 bits (109), Expect = 2e-05
Identities = 40/240 (16%), Positives = 65/240 (27%), Gaps = 47/240 (19%)
Query: 185 QDKLIYIY-TSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAG 240
D +Y + GTTG PK V + L + R +P
Sbjct: 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIV 149
Query: 241 GAMCIGQALIFGCCVVIR-------KKFSASNYFSDVCKYKCTVGQYIGE---------- 283
GA+ +AL G K+ + + V KY + +
Sbjct: 150 GAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209
Query: 284 -----MCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDR-FRIAQIGEFYGATE 335
+ R LL PE ++ + G L + YG+T
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269
Query: 336 GNANIANIDNQP--GAIGFVSRLIPTIYPISIIR-VDPVTSEPIRNKKGLCTRCEPGEPG 392
++ + + S P VD +T++ E GE G
Sbjct: 270 ALGVSRSLLITSESQQVIYDSF-----SPFITYDVVDSITAQT----------VEYGERG 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 78/501 (15%), Positives = 141/501 (28%), Gaps = 161/501 (32%)
Query: 2 LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 61
+ ++L ++ + V + D + FEN
Sbjct: 61 VGKFLGYV--SSLVEPSKVGQFDQVLNLCLTE-------FENC----------------- 94
Query: 62 FLAQGLKKGD--SVALMLENRPEFVCLWLGLSKLGVITA------LINHNLRQNS---LL 110
+L +G D ++A L + + +I + + S L
Sbjct: 95 YL-EG---NDIHALAAKLLQENDTTLV----KTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 111 HCINIAGVSAF-IYG---------AELTDAVQEISTSLGSNVK---------LFSWSPDT 151
+ I+G EL +++ + V L T
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 152 DSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY 211
+ + + L P++ P Y L+ I S P VI Y
Sbjct: 203 LDAEKVFTQGLNILEWLEN-PSNTPDKDY-------LLSIPIS----CPLIGVIQLAHYV 250
Query: 212 FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVC 271
A +G +TP L GA Q L+ V I + S ++F V
Sbjct: 251 ----VTAKLLG-------FTPGELRSYLKGATGHSQGLVTA--VAIAETDSWESFFVSVR 297
Query: 272 KYKCTVGQYIGEMCRYLLSTPEK---PEDKAHNVRL-------MFG-NGL-RPQIWSEFV 319
K TV +IG R + P P ++ M + L + Q+ ++V
Sbjct: 298 KA-ITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV-QDYV 353
Query: 320 DRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNK 379
++ + I+ + N GA V V+ P ++
Sbjct: 354 NKTNS------HLPAGKQVEISLV-N--GAKNLV-----------------VSGPP-QSL 386
Query: 380 KGLCT--RCEPGEPGVFIGKI-------VPSN---PARA-----YLGYVNEKDSAKKIVT 422
GL R G+ +I SN P + L ++ I
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL-----VPASDLINK 441
Query: 423 DVFEIG---DSAFLSDPPKNT 440
D+ + ++ + P +T
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDT 462
Score = 42.7 bits (100), Expect = 4e-04
Identities = 64/422 (15%), Positives = 109/422 (25%), Gaps = 179/422 (42%)
Query: 11 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWT---AQQVEAYSNR-VANFFLAQG 66
A +A+ D + F ++ + +F + + AY N + L
Sbjct: 279 TAVAIAETD-SWES-FFVSVRKA---ITVLF----FIGVRCYE--AYPNTSLPPSILEDS 327
Query: 67 LKKGDSVA-LMLENRPEFVCLWLGLSKLGVITAL--INHNLRQNSLLHC--INIAGVSAF 121
L+ + V ML L++ V + N +L + +N G
Sbjct: 328 LENNEGVPSPMLSIS--------NLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNL 377
Query: 122 IYGAELTDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 180
+ ++ Q SL G N+ L + S +P S+ S
Sbjct: 378 V----VSGPPQ----SLYGLNLTLRKAKAPSGLDQSRIPFSER-----------KLKFSN 418
Query: 181 RVGVQDKLIYIYTSGTTGLPKAAVISN--HRYYFLGGAIA--------YQIGFRTKDRFY 230
R LP +++ H + L A + F KD
Sbjct: 419 RF----------------LP----VASPFHSHL-LVPASDLINKDLVKNNVSFNAKD--- 454
Query: 231 TPL--PLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL 288
+ P+Y T G SD+ ++ + +
Sbjct: 455 --IQIPVYDTFDG--------------------------SDLRVLSGSI---SERIVDCI 483
Query: 289 LSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPG 348
+ P W E +F+ I +F G PG
Sbjct: 484 IRLP------VK--------------W-ETTTQFKATHILDF-G--------------PG 507
Query: 349 AIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYL 408
+ L RNK G R V + + NP Y
Sbjct: 508 GASGLGVLT------------------HRNKDGTGVR-------VIVAGTLDINPDDDY- 541
Query: 409 GY 410
G+
Sbjct: 542 GF 543
Score = 40.8 bits (95), Expect = 0.001
Identities = 81/541 (14%), Positives = 152/541 (28%), Gaps = 195/541 (36%)
Query: 104 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS--------- 154
L SL H + + ++F ++L + + + L + F + D ++
Sbjct: 11 LSHGSLEHVLLVP-TASFFIASQLQE---QFNKILPEPTEGF-AADDEPTTPAELVGKFL 65
Query: 155 ---------SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT--------SGTT 197
S Q L+ L+E Y G D I+ + TT
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC-----YLEG-ND----IHALAAKLLQENDTT 115
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
+ +I + Y A + R D+ L+ G G A +
Sbjct: 116 LVKTKELI---KNYIT----ARIMAKRPFDKKSNS-ALFRAVGE----GNAQLVAI---- 159
Query: 258 RKKF----SASNYFSDV----CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 309
F + +YF ++ Y VG I L D +F G
Sbjct: 160 ---FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD----AEKVFTQG 212
Query: 310 LRPQIW---------SEFVDRFRIA-------QIGEFY------GATEGNANIANIDNQP 347
L W +++ I+ Q+ + G T G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR----SYLK 268
Query: 348 GAIGFVSRLIPTI--------------------------------YPISIIRVDPVTSEP 375
GA G L+ + YP + + + +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-ILEDS 327
Query: 376 IRNKKGL------CTRCEPGEPGVFIGKI---VPSNPARAYLGYVNEKDSAKKIVTDVFE 426
+ N +G+ + + ++ K +P+ + + VN AK +V
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLVN---GAKNLV----- 378
Query: 427 IGDSAFLSDPPKNTTYNKKGLCS-----RCEPGVFIGKI-------VPSN---PARA--- 468
+S PP+ + Y GL + G+ +I SN P +
Sbjct: 379 ------VSGPPQ-SLY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 469 --YLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLL--VMDKWGYLYFKDRTGDTFRWKGEN 524
L ++ I D+ + + +F + D+ V + G R +
Sbjct: 429 SHLL-----VPASDLINKDLVK-NNVSFNAKDIQIPV--------YDTFDGSDLRVLSGS 474
Query: 525 V 525
+
Sbjct: 475 I 475
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.053
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 26/54 (48%)
Query: 132 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 185
Q + L +++KL++ D S P+L+ + ++
Sbjct: 20 QALK-KLQASLKLYA--DD-----------------------SAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.075
Identities = 32/243 (13%), Positives = 64/243 (26%), Gaps = 67/243 (27%)
Query: 317 EFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPI 376
FVD F + + + I +I A+ RL T+
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL---------------- 71
Query: 377 RNKKGLCTRCEPGEPGV--FIGKIVPSNPARAY---LGYVNEKDSAKKIVTDVFEIGDSA 431
E V F+ +++ N Y + + + ++T ++
Sbjct: 72 ---------LSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 432 FLSDPPKNTTYN----------KKGLCS-RCEPGVFI------GK------------IVP 462
+D YN ++ L R V I GK +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 463 SNPARAY---LGYVNEKDSAKKIVTDVFEIGDSAFLS-GDLLVMDKWGYLYFKDRTGDTF 518
+ + L N ++ +++ + D + S D K +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 519 RWK 521
+ K
Sbjct: 239 KSK 241
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 34.5 bits (80), Expect = 0.086
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 29 HAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
H + ++ ++E + + +++ R AN L G+KKGD VA+ + PE
Sbjct: 85 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE 144
Score = 28.3 bits (64), Expect = 7.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 186 DKLIYIYTSGTTGLPK 201
D L +YTSG+TG PK
Sbjct: 257 DPLFILYTSGSTGKPK 272
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric
dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A
2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B
1p69_B 1p6a_B
Length = 126
Score = 31.4 bits (71), Expect = 0.24
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
L I + + ++VI ++ + RV F + LK GD ++ +
Sbjct: 37 GPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVH--FTSNDLKSGD-ASINV 93
Query: 78 EN 79
N
Sbjct: 94 TN 95
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural
genomics of infectious diseases (csgid national
institute of allergy and infectious diseases; 1.70A
{Streptococcus pneumoniae}
Length = 265
Score = 31.1 bits (71), Expect = 0.68
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 335 EGNANIAN-IDNQPGAIGFVSR--LIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEP 391
+ N + + + PGAI ++S + ++ + + D + E I +
Sbjct: 154 DSNGAVKSIVSKSPGAISYLSLTYIDDSVKSMKLNGYDL-SPENISSNNWPLWS-----Y 207
Query: 392 GVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDV 424
P+ A +L +V ++ + IV +
Sbjct: 208 EHMYTLGQPNELAAEFLNFVLSDETQEGIVKGL 240
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 31.8 bits (73), Expect = 0.70
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 29 HAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFF-LAQGLKKGDSVALMLENRP 81
HA+++PNK +FE T +++ +VA + G++KGD+VA+ + P
Sbjct: 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 82 E 82
E
Sbjct: 151 E 151
Score = 28.3 bits (64), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 186 DKLIYIYTSGTTGLPK 201
D L +YTSG+TG PK
Sbjct: 263 DPLFLLYTSGSTGAPK 278
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
{Escherichia coli} PDB: 2w8i_A 2w8h_A*
Length = 359
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 131 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL-I 189
+ + L V ++ +P P P +P L + S YR+GV D L +
Sbjct: 19 LPDSDYDLDKLVNVYPMTPGLIDQLRPEPVIARSNPQLDNLLKSYE---YRIGVGDVLMV 75
Query: 190 YIYTSGTTGLPKAAVISN 207
++ P S
Sbjct: 76 TVWDHPELTTPAGQYRSA 93
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 30.7 bits (70), Expect = 1.4
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 247
+SGTTG P + +A G R D+ + Y T G G
Sbjct: 98 SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG-YGLFTGGLGAHYG- 155
Query: 248 ALIFGCCVV 256
A G V+
Sbjct: 156 AERAGLTVI 164
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter,
phosphate transport receptor; HET: MSE; 1.55A
{Lactobacillus brevis}
Length = 264
Score = 29.6 bits (67), Expect = 2.0
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 335 EGNANIAN-IDNQPGAIGFVSR--LIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEP 391
+ + + + + PGAI +V+ + T+ +S+ V P T +
Sbjct: 154 DSSGMVRSIVATTPGAISYVAFSYVNKTVQALSLNHVAP-TEVNVTTNDWRIWS-----Y 207
Query: 392 GVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDV 424
K P+ +A++ YV +V +
Sbjct: 208 EHLYTKGHPTGLTKAFITYVQSPAIQNTLVRQL 240
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 29.5 bits (67), Expect = 3.0
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 247
+SGTTG P V S H +A Y +G R D F Y T G G
Sbjct: 94 SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG-YGMFTGGLGFQYG- 151
Query: 248 ALIFGCCVV 256
A GC V
Sbjct: 152 AERLGCLTV 160
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 28.2 bits (63), Expect = 3.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 381 GLCTRCEPGEPGVFIGKIVPSNPA 404
+ T G+++ ++P + A
Sbjct: 36 YVGTSHTGEASGIYVKSVIPGSAA 59
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 29.2 bits (66), Expect = 4.0
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 193 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 247
+SGTTG P + A G R D + Y T G + G
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG-YGLFTGGLGIHYG- 157
Query: 248 ALIFGCCVV 256
A GC VV
Sbjct: 158 AERLGCMVV 166
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 28.8 bits (65), Expect = 4.7
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 71 DSVAL---MLENRPEFVCLWLGLSKLGVITALINHNLRQNS---LLHCINIA 116
DSV L +L+ + F L ++ + NH LR+++ C A
Sbjct: 36 DSVVLTDVLLKLKNYF-----SLKEVALAH--FNHMLRESAERDEEFCKEFA 80
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 26.9 bits (60), Expect = 5.2
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 362 PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPA 404
P+ + +V + + G E GV++ I P+ P
Sbjct: 4 PVELHKVT-LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPG 45
>3foa_A Tail sheath protein GP18; alpha-beta, viral structural protein,
bacteriophage T4, viral protein; 3.50A {Enterobacteria
phage T4} PDB: 3foh_A 3foi_A
Length = 510
Score = 28.5 bits (61), Expect = 6.9
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 406 AYLGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTTYNKKGLCSRCEPGVFIGKIVPSNP 465
+ + + + +F G A S +T + S + + +P
Sbjct: 354 DLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKH--VVSIGDVRQDCLVLC--SP 409
Query: 466 ARAYLGYVNEKDSAKKIVTDVFEIGDSAF----LSGDLLVMDKWGYLYFKDRTGDTFRW 520
R + + + +V G +S +D Y Y D+ D RW
Sbjct: 410 PRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAID-GNYKYQYDKYNDVNRW 467
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,488,361
Number of extensions: 517316
Number of successful extensions: 1296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 76
Length of query: 548
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 450
Effective length of database: 3,965,535
Effective search space: 1784490750
Effective search space used: 1784490750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)