RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9226
(548 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 173 bits (440), Expect = 1e-47
Identities = 73/440 (16%), Positives = 147/440 (33%), Gaps = 39/440 (8%)
Query: 23 ADIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 76
A+ H + ++ ++E + + +++ R AN L G+KKGD VA+
Sbjct: 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 134
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 136
+ PE L +++G + ++I ++ CI + I E A + I
Sbjct: 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPL 194
Query: 137 SLGSNVKLFSWSP---------DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 187
+ L + + S + L SP + +D
Sbjct: 195 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 254
Query: 188 LIYIYTSGTTGLPKAAVISNHRYY-FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 246
L +YTSG+TG PK + + Y + Y + D ++ + G + +
Sbjct: 255 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 314
Query: 247 QALIFGCCVVI----RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--H 300
L G ++ + + V K++ + R L++ +K +
Sbjct: 315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 374
Query: 301 NVRLMF--GNGLRPQIWSEFVDRF--RIAQIGEFYGATEGNANIANIDNQPGAIGFVSRL 356
++R++ G + P+ W + + + + + TE I PGAI
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE--TGGFMITPLPGAI------ 426
Query: 357 IPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNE-KD 415
+ S R + + +G E G + AR G +
Sbjct: 427 --ELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 482
Query: 416 SAKKIVTDVFEIGDSAFLSD 435
+ +++ GD A +
Sbjct: 483 TYFSTFKNMYFSGDGARRDE 502
Score = 67.7 bits (165), Expect = 2e-12
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 453 PGVFIGKIVPSNP----ARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYL 508
G G +V ++ AR G ++ F + + SGD D+ GY
Sbjct: 453 EGATEGNLVITDSWPGQARTLFGD------HERFEQTYFSTFKNMYFSGDGARRDEDGYY 506
Query: 509 YFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ R D G + T E+E + + + V G+
Sbjct: 507 WITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 546
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 152 bits (384), Expect = 1e-40
Identities = 69/425 (16%), Positives = 132/425 (31%), Gaps = 25/425 (5%)
Query: 19 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 74
+L + D A K + E T +V + R+ A G+ GD VA
Sbjct: 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 69
Query: 75 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 134
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 70 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129
Query: 135 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 194
L + + + RV + YT+
Sbjct: 130 RGELKTVQHFVVMDEKAPEGYLAYEEAL-----------GEEADPVRVPERAACGMAYTT 178
Query: 195 GTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 252
GTTGLPK V S+ L ++ KD +P++H + L+
Sbjct: 179 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 238
Query: 253 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGNGLR 311
V+ + ++ T + + L E + +R L+ G
Sbjct: 239 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298
Query: 312 PQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPV 371
P+ +R + ++ + YG TE + + + + +S P+
Sbjct: 299 PRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSH-LESLSEEEKLTLKAKTGLPIPL 356
Query: 372 TSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD-VFEIGDS 430
+ +++G + G + Y G NE+ + + D F GD
Sbjct: 357 VRLRVADEEGRPVPKDGKALGEVQ--LKGPWITGGYYG--NEEATRSALTPDGFFRTGDI 412
Query: 431 AFLSD 435
A +
Sbjct: 413 AVWDE 417
Score = 63.8 bits (154), Expect = 2e-11
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 452 EPGVFIGKIVPSNP--ARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLY 509
+ G +G++ P Y G NE+ + + D F F +GD+ V D+ GY+
Sbjct: 371 KDGKALGEVQLKGPWITGGYYG--NEEATRSALTPDGF------FRTGDIAVWDEEGYVE 422
Query: 510 FKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
KDR D + GE +S+ ++E + + ++ V +
Sbjct: 423 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAI 461
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 152 bits (385), Expect = 3e-40
Identities = 79/437 (18%), Positives = 147/437 (33%), Gaps = 36/437 (8%)
Query: 24 DIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFL-AQGLKKGDSVALM 76
+ HA+++PNK +FE E T +++ +VA + G++KGD+VA+
Sbjct: 63 NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 77 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 136
+ PE + L +S++G I +++ NSL IN I E + I T
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 137 --------SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 188
V+ T++ S + L + V +D L
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 189 IYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 247
+YTSG+TG PK S Y + Y +D F+T + G +
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 248 ALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--N 301
L++GC ++ + + S Y+ + ++K T R L + + +
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 302 VRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPT 359
+R + G + ++W + ++ +I + + + G +
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG-------VTP 415
Query: 360 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKK 419
+ P S + + GV K + AR N
Sbjct: 416 MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK--NHDRYLDT 473
Query: 420 IVTD---VFEIGDSAFL 433
+ + GD A
Sbjct: 474 YLNPYPGYYFTGDGAAK 490
Score = 63.0 bits (152), Expect = 5e-11
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 450 RCEPGVFIGKIVPSNPARAYL-GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYL 508
G + ++ D + + + +GD DK GY+
Sbjct: 440 ELNTSHAEGVLAVKAAWPSFARTIWKNHD---RYLDTYLNPYPGYYFTGDGAAKDKDGYI 496
Query: 509 YFKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ R D G +ST E+E + +C V G
Sbjct: 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 536
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 138 bits (347), Expect = 1e-35
Identities = 69/427 (16%), Positives = 132/427 (30%), Gaps = 31/427 (7%)
Query: 19 DLTIADIFREHAVRSPNK-----VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSV 73
D T + + R T + S R+A GL +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 74 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 133
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135
Query: 134 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 193
+ L K+ TD + S L + + + +
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 195
Query: 194 SGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 250
SG+TGLPK + + + + + +P +H G +G +
Sbjct: 196 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255
Query: 251 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GN 308
V++ +F + + YK + + + + + N+ + G
Sbjct: 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 314
Query: 309 GLRPQIWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRV 368
L ++ RF + I + YG TE + I G V +++P + + V
Sbjct: 315 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP-FFEAKV--V 371
Query: 369 DPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTD--VFE 426
D T + + G++ P GYVN ++ ++
Sbjct: 372 DLDTGKT----------LGVNQR----GELCVRGPMIM-SGYVNNPEATNALIDKDGWLH 416
Query: 427 IGDSAFL 433
GD A+
Sbjct: 417 SGDIAYW 423
Score = 65.3 bits (158), Expect = 8e-12
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
G++ P GYVN ++ D SGD+ D+ + +
Sbjct: 379 LGVNQ-RGELCVRGPMIM-SGYVNNPEATNA-----LIDKDGWLHSGDIAYWDEDEHFFI 431
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
DR ++KG V+ E+E ++ D V G+
Sbjct: 432 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 469
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 136 bits (344), Expect = 2e-35
Identities = 72/415 (17%), Positives = 131/415 (31%), Gaps = 42/415 (10%)
Query: 18 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 77
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 80
Query: 78 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 137
E + L + K G I+ + + + ++ + + L + I +
Sbjct: 81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN 140
Query: 138 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 197
+ + ++ VP D IYTSGTT
Sbjct: 141 GQVEIFEEDTIKIREGTNLHVPSKS----------------------TDLAYVIYTSGTT 178
Query: 198 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 257
G PK ++ + L + KDR + A L +I
Sbjct: 179 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 238
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 317
K N F +Y + + + + + + G+ P + ++
Sbjct: 239 LKDT--INDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNK 296
Query: 318 FVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIR 377
+ ++ YG TE IG + I I VD
Sbjct: 297 WKEKVTYIN---AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL--- 350
Query: 378 NKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 432
GE G I AR Y + +++K V + F G+ +
Sbjct: 351 --------KSVGEAGELC--IGGEGLARGYWK--RPELTSQKFVDNPFVPGEKLY 393
Score = 60.3 bits (145), Expect = 3e-10
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKD-SAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLY 509
G G++ A GY + +++K V + F G+ + +GD G +
Sbjct: 351 KSVGE-AGELCIGGEGLA-RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 510 FKDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ R + + +G V EVE ++ + V
Sbjct: 409 YLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH 447
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 134 bits (337), Expect = 2e-34
Identities = 78/419 (18%), Positives = 130/419 (31%), Gaps = 40/419 (9%)
Query: 21 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 198
G+ + S P + + P ++ YTSGTTG
Sbjct: 123 GARIIFLGDLVRDGEPYS-------YGPPIEDPQREPAQPAF---------IFYTSGTTG 166
Query: 199 LPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 256
LPKAA+I L + + + +PLYH G + AL V
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226
Query: 257 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRL---MFGNGLRPQ 313
+ ++F + V + + T L + L F P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286
Query: 314 IWSEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTS 373
E V + + YG TE ++ + G VD
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD---- 342
Query: 374 EPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 432
E G IV ++ + + +A+K+ + D A
Sbjct: 343 -------------EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAV 388
Score = 52.0 bits (123), Expect = 1e-07
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
G IV ++ + + +A+K+ + D A + + G +
Sbjct: 345 VANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE-------GTVRI 397
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
R D GEN+ E+E V+ A + VV G+
Sbjct: 398 LGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 133 bits (335), Expect = 4e-34
Identities = 62/377 (16%), Positives = 124/377 (32%), Gaps = 24/377 (6%)
Query: 19 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 78
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 79 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 138
N EF + L +LG + + R + + + A +A+I + SL
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR---SL 140
Query: 139 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 198
V+ + + L L +E P V D + G+TG
Sbjct: 141 ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPE-----VKSSDVAFLQLSGGSTG 195
Query: 199 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF-GCCVVI 257
L K ++ Y + + LP+ H + +++ G VV+
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 258 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 315
S + F + + K T+ + + + D +++++ G +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 316 SEFVDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEP 375
F F A D + + + + P RV
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS---PYDESRVWDDHDRD 372
Query: 376 IRNKKGLCTRCEPGEPG 392
+PGE G
Sbjct: 373 ----------VKPGETG 379
Score = 49.2 bits (116), Expect = 8e-07
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 451 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYF 510
+PG G ++ P GY + D + +GD++ + + GY+
Sbjct: 373 VKPGET-GHLLTRGPYTI-RGYYK-----AEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 511 KDRTGDTFRWKGENVSTCEVEGVVSNASEYRDCVVYGV 548
+ R D GE V+ EVE + D + +
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSM 463
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 30.0 bits (67), Expect = 0.76
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 246 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 305
Q F + I FSA NY DV K V +Y + N +
Sbjct: 281 SQTTGFPSLITI---FSAPNYL-DVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDV 336
Query: 306 F 306
F
Sbjct: 337 F 337
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 29.0 bits (65), Expect = 0.86
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 319 VDRFRIAQIGEFYGATEGNANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRN 378
+ + + E +D + RL + + + + + PV S+PI +
Sbjct: 125 SRPQGLTEAEQRELEQEAKELKKVMDLS------IVRLRFSAF-LRSLPLKPVISQPIHD 177
Query: 379 KKGLCT 384
K
Sbjct: 178 SKSPGA 183
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 99
Score = 27.6 bits (61), Expect = 1.4
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 41 FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 82
++N E + A ++ FF KGD ++LM+EN +
Sbjct: 18 YQNLEEVLNAISARITQMGGFF-----AKGDRISLMIENHNK 54
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 55
Score = 25.1 bits (55), Expect = 3.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 444 KKGLCSRCEPGVFIGK 459
K C RC PGVF+ +
Sbjct: 17 KHRFCPRCGPGVFLAE 32
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 27.2 bits (60), Expect = 4.0
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 415 DSAKKIVTDVFEIGDSAFLSDPPKNTT----YNKKGLCSRCEPGVFIGKIVPSNPARAYL 470
D A ++V V E+ P+ + Y+ + + + + P +
Sbjct: 10 DKAPEVVHMVIEV---------PRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGD-----Y 55
Query: 471 GYVNEKDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRW 520
G++ + D + L G ++ + G L +D G +
Sbjct: 56 GFIPSTLAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKV 105
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 91
Score = 25.7 bits (56), Expect = 5.3
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 362 PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPA 404
P+ + +V + + G E GV++ I P+ P
Sbjct: 4 PVELHKVT-LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPG 45
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Length = 94
Score = 25.2 bits (55), Expect = 9.2
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 476 KDSAKKIVTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFRWKGENVSTCE 529
K A ++T E A SGD + + +G ++R +G N T E
Sbjct: 18 KKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERK----AREGRNPKTNE 67
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 26.1 bits (57), Expect = 9.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 365 IIRVDPVTSEPIRNKKGLCT 384
R++PV S+ I + K
Sbjct: 189 TRRLEPVVSDAIYDSKAPNA 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,073,003
Number of extensions: 98027
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 23
Length of query: 548
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,171,896
Effective search space: 536728368
Effective search space used: 536728368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)