BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9227
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFCW 81
FI+P F++ FCY L K G K+ R++ A+V IF CW
Sbjct: 183 FIVPLFVMLFCY---GFTLRTLFKAHMGQKH------------RAMRVIFAVVLIFLLCW 227
Query: 82 SPINVINLVNDL------HEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135
P N++ L + L E T + +C NP +YA++ NFR
Sbjct: 228 LPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG 287
Query: 136 FKQVL 140
F ++L
Sbjct: 288 FLKIL 292
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFCW 81
FI+P +I+ CY + +L +L GS+ R+++ +V +F CW
Sbjct: 298 FIVPVLVISVCYSLMIRRLRG-VRLLSGSRE------KDRNLRRITRLVLVVVAVFVGCW 350
Query: 82 SPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQ 138
+P+ V L L + ++ F T ++ ++C NP LYA+L++NF+ F++
Sbjct: 351 TPVQVFVLAQGLGVQPSSETAVAILRFCT-ALGYVNSCLNPILYAFLDENFKACFRK 406
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I MV F C
Sbjct: 212 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIMVIAFLIC 265
Query: 81 WSPINVINLVNDLHE--DVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ D F FF A +S YNP +Y +N FR
Sbjct: 266 WLPYAGVAFYIFTHQGSDFGPIFMTIPAFF-----AKTSAVYNPVIYIMMNKQFR 315
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I MV F C
Sbjct: 211 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIMVIAFLIC 264
Query: 81 WSPINVINLVNDLHE--DVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ D F FF A +S YNP +Y +N FR
Sbjct: 265 WLPYAGVAFYIFTHQGSDFGPIFMTIPAFF-----AKTSAVYNPVIYIMMNKQFR 314
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I MV F C
Sbjct: 212 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIMVIAFLIC 265
Query: 81 WSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ G + + I A +S YNP +Y +N FR
Sbjct: 266 WLPYAGVAFYIFTHQ---GSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I MV F C
Sbjct: 211 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIMVIAFLIC 264
Query: 81 WSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ G + + I A +S YNP +Y +N FR
Sbjct: 265 WLPYAGVAFYIFTHQ---GSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 314
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I MV F C
Sbjct: 212 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIMVIAFLIC 265
Query: 81 WSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ G + + I A +S YNP +Y +N FR
Sbjct: 266 WLPYAGVAFYIFTHQ---GSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++ L+ ++ D+ + V+ +AMSST YNP +Y LND FR F
Sbjct: 257 FAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF 316
Query: 137 KQ 138
K
Sbjct: 317 KH 318
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 72 AMVFIFGFCWSPINVINL----VNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAW 127
A+V F CW P +V L ++D + +Y+ + +T+++A +S+ NP LY
Sbjct: 413 AVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNL 472
Query: 128 LNDNFRKEFKQVL 140
++ NFR+ F L
Sbjct: 473 VSANFRQVFLSTL 485
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 21 QFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFC 80
FIIP +I FCY ++ + + A + S RM+I V F C
Sbjct: 212 HFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT------TQKAEKEVTRMVIIYVIAFLIC 265
Query: 81 WSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
W P + H+ G + + I A +S YNP +Y +N FR
Sbjct: 266 WLPYAGVAFYIFTHQ---GSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 19 FSQFIIPFFIIAFCYIKVSLKLNDRAKLK-------PGSKNLXXXXXXXXXXXXTNRMLI 71
F+ ++P ++ Y+++ L R +LK PG + + L
Sbjct: 183 FACVLVPLLLMLGVYLRIFLA--ARRQLKQMESQPLPGER----ARSTLQKEVHAAKSLA 236
Query: 72 AMVFIFGFCWSPINVINLVNDLHEDV--AGWFYYYVVFFITHSIAMSSTCYNPFLYAWLN 129
+V +F CW P+++IN D A + Y+ ++H+ ++ NPF+YA+
Sbjct: 237 IIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT----NSVVNPFIYAYRI 292
Query: 130 DNFRKEFKQVL 140
FR+ F++++
Sbjct: 293 REFRQTFRKII 303
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 80 CWSPINVINLVNDL----HEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135
CW+PI++ LV L H A YY+ + ++ +++ NP LYA+L++NF++
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCI-----ALGYTNSSLNPILYAFLDENFKRC 462
Query: 136 FKQ 138
F+
Sbjct: 463 FRD 465
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 19 FSQFIIPFFIIAFCYIKVSLKLNDRAKLK-------PGSKNLXXXXXXXXXXXXTNRMLI 71
F+ ++P ++ Y+++ L R +LK PG + + L
Sbjct: 183 FACVLVPLLLMLGVYLRIFLA--ARRQLKQMESQPLPGER----ARSTLQKEVHAAKSLA 236
Query: 72 AMVFIFGFCWSPINVINLVNDLHEDV--AGWFYYYVVFFITHSIAMSSTCYNPFLYAWLN 129
+V +F CW P+++IN D A + Y+ ++H+ ++ NPF+YA+
Sbjct: 237 IIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT----NSVVNPFIYAYRI 292
Query: 130 DNFRKEFKQVL 140
FR+ F++++
Sbjct: 293 REFRQTFRKII 303
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDR-AKLKPGSKNLXXXXXXXXXXXXTNRMLI 71
Y + F IP I+ F ++V + ++ K+ SK + I
Sbjct: 177 YAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGI 236
Query: 72 AMVFIFGFCWSPINVINLVNDLHED-VAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130
M +F CW P ++N+VN + D V W +V F + + +++ NP +Y +
Sbjct: 237 IM-GVFTLCWLPFFLVNIVNVFNRDLVPDWL--FVAF---NWLGYANSAMNPIIYC-RSP 289
Query: 131 NFRKEFKQVLPF 142
+FRK FK++L F
Sbjct: 290 DFRKAFKRLLAF 301
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDR-AKLKPGSKNLXXXXXXXXXXXXTNRMLI 71
Y + F IP I+ F ++V + ++ K+ SK T +++
Sbjct: 177 YAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIM 236
Query: 72 AMVFIFGFCWSPINVINLVNDLHED-VAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130
+F CW P ++N+VN + D V W +V F + + +++ NP +Y +
Sbjct: 237 G---VFTLCWLPFFLVNIVNVFNRDLVPDWL--FVAF---NWLGYANSAMNPIIYC-RSP 287
Query: 131 NFRKEFKQVLPF 142
+FRK FK++L F
Sbjct: 288 DFRKAFKRLLAF 299
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 67 NRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYA 126
RM++ +V +F CW+PI++ ++ L + + V + ++ +++C NP LYA
Sbjct: 382 TRMVLVVVAVFIVCWTPIHIYVIIKALIT-IPETTFQTVSWHFCIALGYTNSCLNPVLYA 440
Query: 127 WLNDNFRKEFKQ 138
+L++NF++ F++
Sbjct: 441 FLDENFKRCFRE 452
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 76 IFGFCWSPINVINLVNDLHEDVAG---WFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNF 132
+F CW P+++IN D + W Y + +A +++ NPF+YA+ F
Sbjct: 241 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV-----LAHTNSVVNPFIYAYRIREF 295
Query: 133 RKEFKQVL 140
R+ F++++
Sbjct: 296 RQTFRKII 303
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 68 RMLIAMVFIFGFCWSPINVINLVNDLHEDV--AGWFYYYVVFFITHSIAMSSTCYNPFLY 125
+ L +V +F CW P+++IN D A + Y+ ++H+ ++ NPF+Y
Sbjct: 354 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT----NSVVNPFIY 409
Query: 126 AWLNDNFRKEFKQVL 140
A+ FR+ F++++
Sbjct: 410 AYRIREFRQTFRKII 424
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 68 RMLIAMVFIFGFCWSPINVINLVNDLHEDV--AGWFYYYVVFFITHSIAMSSTCYNPFLY 125
+ L +V +F CW P+++IN D A + Y+ ++H+ ++ NPF+Y
Sbjct: 395 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT----NSVVNPFIY 450
Query: 126 AWLNDNFRKEFKQVL 140
A+ FR+ F++++
Sbjct: 451 AYRIREFRQTFRKII 465
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 67 NRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYA 126
RM++ +V F CW+PI++ +V L + + ++ +++ NP LYA
Sbjct: 379 TRMVLVVVGAFVVCWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYA 438
Query: 127 WLNDNFRKEFKQV 139
+L++NF++ F+Q+
Sbjct: 439 FLDENFKRCFRQL 451
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKL------KPGSKNLXXXXXXXXXXXXTNRMLIAMVF 75
F P II FCY + + +++ K + +K L ++ I +V
Sbjct: 208 FFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVS 267
Query: 76 IFGFCWSPINVINLVNDLH--EDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
F WSP V+ L+ E V + V F A +S +NP +Y+ + FR
Sbjct: 268 QFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMF-----AKASAIHNPMIYSVSHPKFR 322
Query: 134 KEFKQVLPF 142
+ Q P+
Sbjct: 323 EAISQTFPW 331
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKL------KPGSKNLXXXXXXXXXXXXTNRMLIAMVF 75
F P II FCY + + +++ K + +K L ++ I +V
Sbjct: 209 FFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVS 268
Query: 76 IFGFCWSPINVINLVNDLH--EDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFR 133
F WSP V+ L+ E V + V F A +S +NP +Y+ + FR
Sbjct: 269 QFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMF-----AKASAIHNPMIYSVSHPKFR 323
Query: 134 KEFKQVLPF 142
+ Q P+
Sbjct: 324 EAISQTFPW 332
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 67 NRMLIAMVFIFGFCWSPINVINLVNDLHEDV---AGWFYYYVVFFITHSIAMSSTCYNPF 123
R ++A++ F W+P NV+ L+N W Y + +I +I NP
Sbjct: 387 TRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTI-------NPA 439
Query: 124 LYAWLNDNFRKEFKQVL 140
YA N F+K FK +L
Sbjct: 440 CYALCNATFKKTFKHLL 456
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 68 RMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAW 127
+ L A++ F W+P N++ LVN + Y+ + +++ + ++ST NP YA
Sbjct: 374 QTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCY---INSTV-NPVCYAL 429
Query: 128 LNDNFRKEFKQVL 140
N FR FK +L
Sbjct: 430 CNKTFRTTFKTLL 442
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 29.6 bits (65), Expect = 0.73, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + +++ V+ + + I ++ +NP +Y D FR F
Sbjct: 431 FTLCWLPFFIVNIVHVIQDNLI----RKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 485
Query: 137 KQVL 140
+++L
Sbjct: 486 QELL 489
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 121 NPFLYAWLNDNFRKEFKQVL 140
NP +Y N+NF+K FK++L
Sbjct: 422 NPLIYPLCNENFKKTFKRIL 441
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIA 72
Y + F +P I+ F Y +V + + L + L
Sbjct: 171 YAIASSIVSFYVPLVIMVFVYSRV---------FQEAKRQLQKIDKFCLKEHKALKTLGI 221
Query: 73 MVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNF 132
++ F CW P ++N+V+ + +++ V+ + + I ++ +NP +Y + +F
Sbjct: 222 IMGTFTLCWLPFFIVNIVHVIQDNL----IRKEVYILLNWIGYVNSGFNPLIYC-RSPDF 276
Query: 133 RKEFKQVL 140
R F+++L
Sbjct: 277 RIAFQELL 284
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 109 ITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
IT ++A C NP LYA+L F+ + L
Sbjct: 457 ITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 488
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 109 ITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
IT ++A C NP LYA+L F+ + L
Sbjct: 460 ITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 109 ITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
IT ++A C NP LYA+L F+ + L
Sbjct: 460 ITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + ++ V+ + + I ++ +NP +Y D FR F
Sbjct: 386 FTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 440
Query: 137 KQVL 140
+++L
Sbjct: 441 QELL 444
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + ++ V+ + + I ++ +NP +Y + +FR F
Sbjct: 259 FTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 313
Query: 137 KQVL 140
+++L
Sbjct: 314 QELL 317
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + +++ V+ + + I ++ +NP +Y D FR F
Sbjct: 282 FTLCWLPFFIVNIVHVIQDNL----IRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 336
Query: 137 KQVL 140
+++L
Sbjct: 337 QELL 340
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + +++ V+ + + I ++ +NP +Y D FR F
Sbjct: 283 FTLCWLPFFIVNIVHVIQDNL----IRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 337
Query: 137 KQVL 140
+++L
Sbjct: 338 QELL 341
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + ++ V+ + + I ++ +NP +Y D FR F
Sbjct: 418 FTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 472
Query: 137 KQVL 140
+++L
Sbjct: 473 QELL 476
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + ++ V+ + + I ++ +NP +Y D FR F
Sbjct: 417 FTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 471
Query: 137 KQVL 140
+++L
Sbjct: 472 QELL 475
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 77 FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136
F CW P ++N+V+ + ++ V+ + + I ++ +NP +Y D FR F
Sbjct: 418 FTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYCRSPD-FRIAF 472
Query: 137 KQVL 140
+++L
Sbjct: 473 QELL 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.146 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,529,272
Number of Sequences: 62578
Number of extensions: 106716
Number of successful extensions: 343
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 42
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.7 bits)