Query psy9227
Match_columns 156
No_of_seqs 102 out of 1563
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 22:08:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 2.4E-24 5.3E-29 157.5 11.7 130 12-144 208-337 (423)
2 PHA03234 DNA packaging protein 99.9 9.8E-23 2.1E-27 151.0 15.8 107 19-140 203-314 (338)
3 PHA03235 DNA packaging protein 99.9 2.3E-22 5E-27 152.3 13.6 116 12-142 203-323 (409)
4 PHA02834 chemokine receptor-li 99.9 3E-22 6.6E-27 147.8 11.3 118 13-145 189-312 (323)
5 PHA02638 CC chemokine receptor 99.9 1.2E-20 2.6E-25 143.4 14.6 117 13-145 273-400 (417)
6 PHA03087 G protein-coupled che 99.8 7E-19 1.5E-23 130.4 15.0 120 15-148 205-329 (335)
7 KOG4220|consensus 99.7 1.7E-18 3.7E-23 127.3 5.2 87 61-151 410-496 (503)
8 PF00001 7tm_1: 7 transmembran 99.7 1.6E-16 3.4E-21 112.2 13.8 113 10-125 145-257 (257)
9 PF10324 7TM_GPCR_Srw: Serpent 99.5 1.9E-12 4E-17 95.5 12.8 127 12-143 191-318 (318)
10 KOG2087|consensus 99.1 9.2E-13 2E-17 96.1 -4.4 116 13-143 192-307 (363)
11 PF05296 TAS2R: Mammalian tast 99.1 5.5E-09 1.2E-13 76.7 13.3 128 9-144 176-303 (303)
12 PF10323 7TM_GPCR_Srv: Serpent 98.9 2.4E-07 5.3E-12 67.5 14.9 117 17-142 167-283 (283)
13 PF10320 7TM_GPCR_Srsx: Serpen 98.6 3.4E-07 7.4E-12 65.8 9.0 100 27-140 158-257 (257)
14 PF10321 7TM_GPCR_Srt: Serpent 98.2 1.3E-05 2.9E-10 59.1 8.3 104 26-146 208-311 (313)
15 PF10328 7TM_GPCR_Srx: Serpent 97.9 0.00038 8.3E-09 50.5 11.7 104 26-140 170-273 (274)
16 PF05462 Dicty_CAR: Slime mold 97.9 0.00077 1.7E-08 49.7 12.4 65 70-140 204-268 (303)
17 PF10327 7TM_GPCR_Sri: Serpent 97.8 0.00028 6E-09 52.1 9.0 114 9-135 189-302 (303)
18 PF03402 V1R: Vomeronasal orga 97.6 9.7E-05 2.1E-09 53.2 4.3 107 23-136 157-263 (265)
19 PF10317 7TM_GPCR_Srd: Serpent 97.6 0.0039 8.4E-08 45.7 12.8 98 28-138 195-292 (292)
20 PF02101 Ocular_alb: Ocular al 97.5 0.0018 3.9E-08 48.6 10.0 67 22-92 198-268 (405)
21 PF11970 Git3_C: G protein-cou 97.3 0.0015 3.3E-08 38.0 5.8 68 60-130 4-72 (76)
22 PF10318 7TM_GPCR_Srh: Serpent 96.8 0.11 2.5E-06 38.1 13.7 114 16-142 188-302 (302)
23 KOG4193|consensus 96.7 0.053 1.1E-06 43.9 11.6 112 22-149 474-588 (610)
24 PF10319 7TM_GPCR_Srj: Serpent 96.3 0.2 4.4E-06 37.0 11.7 72 59-135 237-309 (310)
25 PF10326 7TM_GPCR_Str: Serpent 96.2 0.0018 3.9E-08 47.7 0.9 112 12-137 195-307 (307)
26 PF03125 Sre: C. elegans Sre G 96.0 0.46 1E-05 36.1 15.7 38 105-142 284-321 (365)
27 PF02118 Srg: Srg family chemo 95.8 0.48 1E-05 34.2 12.7 101 19-135 174-274 (275)
28 KOG4220|consensus 95.2 0.012 2.7E-07 44.9 2.0 39 10-48 190-228 (503)
29 PF10292 7TM_GPCR_Srab: Serpen 94.3 1.6 3.5E-05 32.6 14.0 85 56-142 221-306 (324)
30 PF04789 DUF621: Protein of un 92.6 2.3 5.1E-05 31.1 9.2 110 14-141 188-297 (305)
31 PF02117 7TM_GPCR_Sra: Serpent 91.5 4.8 0.0001 30.2 13.9 83 55-137 223-305 (328)
32 PF10322 7TM_GPCR_Sru: Serpent 91.4 0.43 9.4E-06 35.4 4.6 100 23-134 205-304 (307)
33 KOG4564|consensus 91.2 0.89 1.9E-05 35.8 6.2 102 23-141 317-418 (473)
34 PF09889 DUF2116: Uncharacteri 69.5 14 0.0003 20.3 3.8 23 60-82 32-54 (59)
35 KOG2575|consensus 69.4 6.1 0.00013 30.7 3.1 26 63-88 254-279 (510)
36 PF11368 DUF3169: Protein of u 67.3 44 0.00094 24.0 12.1 31 60-90 89-119 (248)
37 PF15086 UPF0542: Uncharacteri 65.8 16 0.00035 20.9 3.6 32 12-43 19-51 (74)
38 PF02076 STE3: Pheromone A rec 65.6 49 0.0011 24.4 7.1 22 70-91 200-221 (283)
39 PRK04989 psbM photosystem II r 64.8 15 0.00033 17.8 2.9 23 14-36 7-29 (35)
40 PF05478 Prominin: Prominin; 61.0 1.1E+02 0.0023 26.3 9.5 76 13-95 412-488 (806)
41 CHL00080 psbM photosystem II p 59.8 19 0.00041 17.3 2.8 24 13-36 6-29 (34)
42 PF00002 7tm_2: 7 transmembran 58.3 3.3 7.1E-05 29.2 0.0 21 65-85 195-215 (242)
43 COG3924 Predicted membrane pro 58.2 29 0.00063 19.9 3.7 35 8-42 37-71 (80)
44 TIGR03038 PS_II_psbM photosyst 57.6 21 0.00045 17.1 3.0 22 14-35 7-28 (33)
45 PF13853 7tm_4: Olfactory rece 53.8 0.2 4.4E-06 32.8 -6.3 73 3-89 47-119 (144)
46 PF06305 DUF1049: Protein of u 53.7 16 0.00034 20.2 2.4 31 12-42 22-52 (68)
47 PF04505 Dispanin: Interferon- 50.0 51 0.0011 19.3 6.0 32 10-42 18-49 (82)
48 PF05151 PsbM: Photosystem II 48.5 31 0.00066 16.3 3.8 22 15-36 8-29 (31)
49 TIGR03753 blh_monoox beta-caro 45.7 1.2E+02 0.0025 22.1 6.4 36 11-46 159-194 (259)
50 PRK14094 psbM photosystem II r 44.6 19 0.00042 18.7 1.5 24 13-36 6-29 (50)
51 PF12725 DUF3810: Protein of u 41.0 1.5E+02 0.0034 22.2 7.0 27 64-90 58-84 (318)
52 PF15102 TMEM154: TMEM154 prot 40.8 6.4 0.00014 25.9 -0.7 7 20-26 59-65 (146)
53 COG2322 Predicted membrane pro 40.2 89 0.0019 21.2 4.5 30 60-89 72-101 (177)
54 KOG0721|consensus 40.0 65 0.0014 22.9 4.0 15 128-142 112-126 (230)
55 PF02699 YajC: Preprotein tran 39.7 38 0.00083 19.8 2.5 23 27-49 10-32 (82)
56 COG1983 PspC Putative stress-r 39.3 73 0.0016 18.2 3.5 32 62-93 27-58 (70)
57 PLN00090 photosystem II reacti 37.0 78 0.0017 19.2 3.5 24 13-36 76-99 (113)
58 TIGR02976 phageshock_pspB phag 36.0 90 0.0019 18.1 6.6 23 21-43 5-27 (75)
59 PF02935 COX7C: Cytochrome c o 36.0 82 0.0018 17.6 3.9 21 8-28 37-57 (65)
60 PHA02650 hypothetical protein; 35.9 93 0.002 18.2 3.8 19 20-38 56-74 (81)
61 PHA03234 DNA packaging protein 33.8 2.1E+02 0.0045 21.6 9.3 39 107-145 285-323 (338)
62 PF05393 Hum_adeno_E3A: Human 33.4 54 0.0012 19.6 2.4 11 71-81 45-55 (94)
63 cd00929 Cyt_c_Oxidase_VIIc Cyt 33.1 77 0.0017 16.4 3.4 23 6-28 17-39 (46)
64 COG1862 YajC Preprotein transl 32.6 31 0.00067 21.1 1.4 23 23-45 13-35 (97)
65 PF03155 Alg6_Alg8: ALG6, ALG8 32.6 57 0.0012 26.1 3.2 26 62-87 219-244 (469)
66 PHA02844 putative transmembran 30.4 1.1E+02 0.0025 17.6 3.4 26 11-37 47-72 (75)
67 KOG3500|consensus 29.4 90 0.002 18.4 2.8 28 63-92 30-57 (84)
68 PF05391 Lsm_interact: Lsm int 28.6 36 0.00078 14.5 0.8 10 128-137 11-20 (21)
69 PRK15445 arsenical pump membra 28.4 2.9E+02 0.0062 21.5 7.5 17 25-41 181-197 (427)
70 TIGR02736 cbb3_Q_epsi cytochro 27.6 1.1E+02 0.0024 16.6 3.5 23 23-45 6-28 (56)
71 PF11286 DUF3087: Protein of u 27.4 2E+02 0.0044 19.5 5.8 25 117-141 73-97 (165)
72 PF02096 60KD_IMP: 60Kd inner 26.8 2.1E+02 0.0046 19.5 7.2 61 20-90 119-179 (198)
73 PRK11056 hypothetical protein; 26.2 1.4E+02 0.003 19.0 3.5 23 23-45 94-116 (120)
74 PRK12768 CysZ-like protein; Re 25.8 2.6E+02 0.0056 20.2 6.5 22 64-85 187-208 (240)
75 PHA02692 hypothetical protein; 25.2 1.4E+02 0.0031 17.0 3.9 27 10-36 43-69 (70)
76 PRK09174 F0F1 ATP synthase sub 24.8 1.7E+02 0.0037 20.4 4.2 19 29-47 71-89 (204)
77 PTZ00370 STEVOR; Provisional 24.7 1.9E+02 0.0042 21.5 4.5 14 26-39 268-281 (296)
78 PF10669 Phage_Gp23: Protein g 24.3 1.8E+02 0.0039 17.8 5.0 12 26-37 27-38 (121)
79 PF01528 Herpes_glycop: Herpes 23.8 3.4E+02 0.0074 21.1 5.8 33 14-46 302-334 (374)
80 PHA02819 hypothetical protein; 23.7 1.5E+02 0.0034 16.9 3.7 18 20-37 53-70 (71)
81 PRK13629 threonine/serine tran 23.7 3.1E+02 0.0066 21.9 5.7 66 18-87 209-276 (443)
82 TIGR01912 TatC-Arch Twin argin 23.7 2.8E+02 0.006 19.9 5.2 33 61-93 8-40 (237)
83 PF07226 DUF1422: Protein of u 23.6 1.5E+02 0.0033 18.8 3.3 24 22-45 93-116 (117)
84 PRK09458 pspB phage shock prot 23.5 1.6E+02 0.0035 17.0 6.4 26 21-46 5-30 (75)
85 PF05478 Prominin: Prominin; 23.3 2.1E+02 0.0046 24.6 5.2 23 12-34 95-117 (806)
86 PRK13454 F0F1 ATP synthase sub 23.2 2.1E+02 0.0045 19.5 4.3 19 30-48 50-68 (181)
87 PHA01815 hypothetical protein 22.9 1.3E+02 0.0027 15.5 4.3 24 16-39 9-32 (55)
88 PF02118 Srg: Srg family chemo 22.5 2.9E+02 0.0064 19.6 12.5 21 16-36 175-195 (275)
89 PHA02909 hypothetical protein; 21.8 1.5E+02 0.0033 16.0 4.6 22 17-38 40-61 (72)
90 COG4736 CcoQ Cbb3-type cytochr 21.8 1.6E+02 0.0034 16.3 4.4 27 20-46 10-36 (60)
91 PLN00085 photosystem II reacti 21.5 1.1E+02 0.0024 19.5 2.4 23 14-36 84-106 (149)
92 PLN03190 aminophospholipid tra 21.4 4.4E+02 0.0096 24.0 6.8 68 65-138 932-999 (1178)
93 PRK06531 yajC preprotein trans 21.4 27 0.00059 22.0 -0.3 9 24-32 7-15 (113)
94 TIGR00739 yajC preprotein tran 21.3 30 0.00066 20.4 -0.1 14 29-42 13-26 (84)
95 PF08693 SKG6: Transmembrane a 21.2 36 0.00078 17.1 0.2 20 23-42 18-37 (40)
96 PHA02754 hypothetical protein; 21.1 82 0.0018 17.2 1.6 14 126-139 10-23 (67)
97 PF04854 DUF624: Protein of un 20.9 1.7E+02 0.0038 16.4 8.6 27 21-47 13-39 (77)
98 PF11119 DUF2633: Protein of u 20.9 1.4E+02 0.0029 16.5 2.4 28 63-90 6-33 (59)
99 KOG3827|consensus 20.6 2.3E+02 0.0049 22.2 4.3 32 62-93 58-89 (400)
100 PF10624 TraS: Plasmid conjuga 20.0 65 0.0014 20.9 1.2 22 74-95 31-52 (164)
No 1
>KOG4219|consensus
Probab=99.92 E-value=2.4e-24 Score=157.47 Aligned_cols=130 Identities=29% Similarity=0.636 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN 91 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~ 91 (156)
.|..+..++.+++|++++..+|..|.+++|.++. .+. ++.++....++++|+.+|++++++.|.+||+||++..++.
T Consensus 208 ~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~--~gd-~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~ 284 (423)
T KOG4219|consen 208 GYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI--PGD-QQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILN 284 (423)
T ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC--ccc-hhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3888899999999999999999999999998652 221 1124556678889999999999999999999999999998
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccccc
Q psy9227 92 DLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFS 144 (156)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~ 144 (156)
....+..........+....||+++|++.||+||+++|++||.++++.++|+.
T Consensus 285 ~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 285 ATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 88888888788888999999999999999999999999999999999998874
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.90 E-value=9.8e-23 Score=151.04 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---
Q psy9227 19 FSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHE--- 95 (156)
Q Consensus 19 ~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~--- 95 (156)
.+.+++|+++|++||..|.+.++++. .++++|+++++++++++|++||+||++..+++....
T Consensus 203 ~~~f~iPl~im~~cY~~I~~~L~~~~---------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~ 267 (338)
T PHA03234 203 FIWGIFPTMIFSFFYVIFCKALHALT---------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIA 267 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 34579999999999999999997631 134578999999999999999999999887755421
Q ss_pred --ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhc
Q psy9227 96 --DVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140 (156)
Q Consensus 96 --~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~ 140 (156)
++...........++.+++++||++||++|++.+++||+++++.+
T Consensus 268 ~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~ 314 (338)
T PHA03234 268 NNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACF 314 (338)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 122222334567889999999999999999999999999988654
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.89 E-value=2.3e-22 Score=152.26 Aligned_cols=116 Identities=18% Similarity=0.294 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN 91 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~ 91 (156)
.|.+..+++.|++|+++|++||.+|++.++++.+ ++++|+.+++.+++++|++||+||++..++.
T Consensus 203 ~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~---------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~ 267 (409)
T PHA03235 203 TFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY---------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFD 267 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 4666777788999999999999999999987532 1234778889999999999999999998876
Q ss_pred HHhh-----ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccc
Q psy9227 92 DLHE-----DVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPF 142 (156)
Q Consensus 92 ~~~~-----~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~ 142 (156)
.+.. ++........+..++.+++++||++||+||++++++||+++++.+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 268 SYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 5432 11111223346678899999999999999999999999999987754
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.88 E-value=3e-22 Score=147.80 Aligned_cols=118 Identities=23% Similarity=0.484 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVND 92 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~ 92 (156)
+....+++.|++|+++|+++|.+|.+.++++.+ ++++|.++++++++++|++||+||++..++..
T Consensus 189 ~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~---------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~ 253 (323)
T PHA02834 189 FNFEINIFGIVIPLIILIYCYSKILYTLKNCKN---------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINS 253 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHH
Confidence 344455788999999999999999999987522 12457889999999999999999999988765
Q ss_pred Hhhcc------chhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccccc
Q psy9227 93 LHEDV------AGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSS 145 (156)
Q Consensus 93 ~~~~~------~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~ 145 (156)
+.+.. ...........+..+++++||++||++|++++++||+++++++++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~ 312 (323)
T PHA02834 254 LQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312 (323)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence 54321 111122234568889999999999999999999999999998865444
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.86 E-value=1.2e-20 Score=143.37 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVND 92 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~ 92 (156)
+.+...++.+++|+++|++||.+|++.+++..+ ++++|.++++++++++|++||+||.+..++..
T Consensus 273 ~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~---------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~ 337 (417)
T PHA02638 273 LQFEINILGMFIPIIIFAFCYIKIILKLKQLKK---------------SKKTKSIIIVSIIIICSLICWIPLNIVILFAT 337 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444456777899999999999999999976421 12457789999999999999999999998876
Q ss_pred Hhhc-----------cchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccccc
Q psy9227 93 LHED-----------VAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSS 145 (156)
Q Consensus 93 ~~~~-----------~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~ 145 (156)
+... +... ....+..++..++++||++||++|++.+++||+++++++++...
T Consensus 338 ~~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~~ 400 (417)
T PHA02638 338 MYSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIFT 400 (417)
T ss_pred HHHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhcc
Confidence 5421 1111 23345678889999999999999999999999999998865553
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.82 E-value=7e-19 Score=130.42 Aligned_cols=120 Identities=27% Similarity=0.559 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q psy9227 15 TIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLH 94 (156)
Q Consensus 15 ~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~ 94 (156)
+....+.+++|+++++++|.++.+.++++.+ .++++|+.|++.+++++|++||.|+.+..++....
T Consensus 205 ~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~--------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~ 270 (335)
T PHA03087 205 FEINIIGMLIPLTILLYCYSKILITLKGINK--------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLH 270 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677899999999999999999877532 13456889999999999999999999987765432
Q ss_pred h-----ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccccccCC
Q psy9227 95 E-----DVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSAGG 148 (156)
Q Consensus 95 ~-----~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~~~~ 148 (156)
. .+........+..+..+++.+|+++||+||++++++||+++++.++.....+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~~~ 329 (335)
T PHA03087 271 ILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTSSG 329 (335)
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhcCC
Confidence 1 12222334456678889999999999999999999999999999876655443
No 7
>KOG4220|consensus
Probab=99.74 E-value=1.7e-18 Score=127.35 Aligned_cols=87 Identities=24% Similarity=0.410 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhc
Q psy9227 61 ERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140 (156)
Q Consensus 61 ~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~ 140 (156)
.+|+|+++++.+|.++|+++|.||.|+.++.+|+.++.... +-.+..||-|+||.+||++|+++|+.||+.+++++
T Consensus 410 ~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP~t----lW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL 485 (503)
T KOG4220|consen 410 VRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIPET----LWTFGYWLCYINSTINPLCYALCNATFRKTFKRLL 485 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccchh----HhhhhhheeeecccccHHHHHHHhHHHHHHHHHhh
Confidence 67899999999999999999999999999999999996633 45788999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q psy9227 141 PFFSSAGGASS 151 (156)
Q Consensus 141 ~~~~~~~~~~~ 151 (156)
.|++..+....
T Consensus 486 ~Cr~~~~~~~~ 496 (503)
T KOG4220|consen 486 LCRWKKRRTRR 496 (503)
T ss_pred eeeecccchhc
Confidence 99887666443
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.73 E-value=1.6e-16 Score=112.22 Aligned_cols=113 Identities=27% Similarity=0.564 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy9227 10 LLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINL 89 (156)
Q Consensus 10 ~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l 89 (156)
...+......+.+++|+++++++|.++++.++++.++.....+ ...+++.++++|.++++++++++|++||+|+.+..+
T Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~ 223 (257)
T PF00001_consen 145 SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSS-SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSL 223 (257)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeeeeeecccccccccccccccccccc-cccccccccccccccccccccccccccCCceeHHHH
Confidence 4678888899999999999999999999999998887665443 333445678889999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy9227 90 VNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLY 125 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY 125 (156)
+....+.... .......+..++.++|+++||++|
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 224 LSVFSPSSSL--ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHSSTSTC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccch--hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 8887766522 345688899999999999999998
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.46 E-value=1.9e-12 Score=95.55 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN 91 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~ 91 (156)
.|.....++.-++|.++..++.+.+.+++|+..++++...++. .+++.+.+++++.+++.|+++-+|..+..+++
T Consensus 191 ~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~-----~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~ 265 (318)
T PF10324_consen 191 IYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK-----SKKSDRTTKLILFMTISFLISELPQGIIFLLE 265 (318)
T ss_pred HHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc-----cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454455555789999999999999999998877666554222 23456899999999999999999999999998
Q ss_pred HHhhcc-chhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccc
Q psy9227 92 DLHEDV-AGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFF 143 (156)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~ 143 (156)
.+..+. ........+..+...+...|++.|+++|..++++||++++++++|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 266 SFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 864433 2334455677888999999999999999999999999999999874
No 10
>KOG2087|consensus
Probab=99.14 E-value=9.2e-13 Score=96.08 Aligned_cols=116 Identities=22% Similarity=0.392 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVND 92 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~ 92 (156)
|.+..++..-.+.+++|+++|++++..+++...+.... +.+.++-+..++.+-++||.|..++.+...
T Consensus 192 ~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~------------~~~~akr~a~LvfTd~icw~Pi~f~~~~al 259 (363)
T KOG2087|consen 192 YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLI------------STSVAKRMAFLVFTDCICWCPIAFFKFSAL 259 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccc------------hhhhhhCeeEEEEccccccCchheeeeHHh
Confidence 66667777778889999999999999998854432221 136677788888999999999999999888
Q ss_pred HhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccc
Q psy9227 93 LHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFF 143 (156)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~ 143 (156)
++.+........ .+..++.-+||++||++|++.++.||+.++.++...
T Consensus 260 ~~~~li~~~~sk---~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 260 IGVELISVSYSK---WLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred cCCcccChhhce---eEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 877664433221 233345568999999999999999999999876443
No 11
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.09 E-value=5.5e-09 Score=76.75 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy9227 9 GLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVIN 88 (156)
Q Consensus 9 ~~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~ 88 (156)
....+......+...+|+++++.+-..+...++||.++++...++.++. +.++..|+.|++....+.|+++++-..+
T Consensus 176 ~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~p-s~~aH~~a~k~~~sfl~ly~~~~~~~~~-- 252 (303)
T PF05296_consen 176 SSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDP-STEAHIRAIKTMISFLILYIIYFLSLIL-- 252 (303)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444555556688999999999999999999999999998776544433 3567778999988777777765544333
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccccc
Q psy9227 89 LVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFS 144 (156)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~ 144 (156)
..........+ ....+...+..+.++..|++-.+.|+++|+++++.++|.+
T Consensus 253 --~~~~~~~~~~~---~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 253 --SFLSFFFPENS---IWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred --HHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 22222111111 2346677788899999999999999999999999987754
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.87 E-value=2.4e-07 Score=67.47 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Q psy9227 17 MAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHED 96 (156)
Q Consensus 17 ~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~ 96 (156)
.......+-.+..+++|..+...+||+.+ ++..+.+++.++|.+.+.+..+.++++++...=+.. ..+.....+
T Consensus 167 ~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k-----~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~-~~~~~~~~~ 240 (283)
T PF10323_consen 167 IAFIFVSVTCVICIVCYGIIFIFIRKRNK-----KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIF-SNYFAQNFN 240 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 33444556677889999999999998763 222234445677888888887777766555444433 333233222
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccc
Q psy9227 97 VAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPF 142 (156)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~ 142 (156)
. +.....+.+-..+....|.+||+.-.+.|+++|+++++.++|
T Consensus 241 ~---~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 241 T---DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred c---hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 2 212334456666777999999999999999999999999887
No 13
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.62 E-value=3.4e-07 Score=65.83 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHH
Q psy9227 27 FIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVV 106 (156)
Q Consensus 27 ~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~ 106 (156)
++++..|...+..++++.++ ..+.++|+.|.+.++++.|+.+|.-..+...+....+.. .+....+
T Consensus 158 v~tvivY~i~~~~~~~k~~~------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~--~~~~~~i 223 (257)
T PF10320_consen 158 VITVIVYIITIIIFKRKSRS------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLD--GETIAII 223 (257)
T ss_pred HHHHHHHHHHHHHHHHHccc------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCc--HHHHHHH
Confidence 34566777777777664332 234467899999999999999999888887765433332 2333456
Q ss_pred HHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhc
Q psy9227 107 FFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140 (156)
Q Consensus 107 ~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~ 140 (156)
.....++...|.+.|.++|.++++|||+++++++
T Consensus 224 ~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 224 QMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 6777889999999999999999999999999864
No 14
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.18 E-value=1.3e-05 Score=59.10 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHH
Q psy9227 26 FFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYV 105 (156)
Q Consensus 26 l~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~ 105 (156)
.+.++.+|+.+...++++.++... .+..+.++++..-..++.....+.++-|..+.... .++ .
T Consensus 208 ~~~t~~lY~~l~~~l~~k~~~~~s-------~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~~-------~p~---~ 270 (313)
T PF10321_consen 208 VICTTFLYIYLCYYLIKKSKYSTS-------SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFFP-------PPP---W 270 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeeec-------ccH---H
Confidence 557889999999999886554422 22345667887777777777777776665555431 112 2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccccccc
Q psy9227 106 VFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSA 146 (156)
Q Consensus 106 ~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~~ 146 (156)
+..+.+..=.+++..+|++|..+|++.|++++++++.++.+
T Consensus 271 ~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 271 LIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred HHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 45566667779999999999999999999999999866544
No 15
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.92 E-value=0.00038 Score=50.47 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHH
Q psy9227 26 FFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYV 105 (156)
Q Consensus 26 l~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~ 105 (156)
.+++..+++.+..++++..++. ..++.+.++++++|.+..+..+.--+.+++.++-+.+..-+ . ++ ++.
T Consensus 170 ~~~~~~lni~t~ikl~~~~~~~--~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~--~-~~----~~~-- 238 (274)
T PF10328_consen 170 VIISNILNIITFIKLRKFRKKI--SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL--S-SN----RWW-- 238 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-cc----cHH--
Confidence 5577788888888888776666 22333455567789999999999999999999888877554 1 11 221
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhc
Q psy9227 106 VFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140 (156)
Q Consensus 106 ~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~ 140 (156)
....+...-.+.-++|++++...|+|+|+..++..
T Consensus 239 ~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 239 QFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 11222222344556899999999999999998753
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.86 E-value=0.00077 Score=49.68 Aligned_cols=65 Identities=15% Similarity=0.318 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhc
Q psy9227 70 LIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140 (156)
Q Consensus 70 ~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~ 140 (156)
+..-.++|++||+|-.+..+.+.++. .+ . .+..+...++.+-=.+|.++|++-++..++.+...+
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~-~~--~---~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGK-NP--F---WLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-Cc--h---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44688899999999999999988753 22 1 233343444445557999999999998888887655
No 17
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.77 E-value=0.00028 Score=52.08 Aligned_cols=114 Identities=23% Similarity=0.175 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy9227 9 GLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVIN 88 (156)
Q Consensus 9 ~~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~ 88 (156)
...........+..++-.++..+++..+++.+++.+++... +..++.+++.+-+.+=.++-.+|-+|-.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~--------~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~ 260 (303)
T PF10327_consen 189 PWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK--------QTYQKHKEAVRSLIAQFATSSICILPPFIFV 260 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555556677778888899999999876554333 2466778888888888888899999999988
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHH
Q psy9227 89 LVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135 (156)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~ 135 (156)
.......+.. ..+.........++|.+|-++-.+.++.||+-
T Consensus 261 ~~~~~~~~~~-----q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 261 VVVIFEFEDA-----QVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred hhheecCCCc-----HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 7644433322 23456777788899999999999999999974
No 18
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.60 E-value=9.7e-05 Score=53.21 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHH
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFY 102 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~ 102 (156)
++.+.+|+.+-..+...+.||+++.+...+..... +...|.|+++++++++.+|+..+....++..+.....+.+
T Consensus 157 ~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~-r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~---- 231 (265)
T PF03402_consen 157 VLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSP-RSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSP---- 231 (265)
T ss_pred HHHHHHHHhhhhhheeeeeecccccccCcCCCCCC-CCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCc----
Confidence 55577899999999999999988877654433222 2346789999999999999999999988866544332221
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHH
Q psy9227 103 YYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF 136 (156)
Q Consensus 103 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~ 136 (156)
.+.....+++.+.+.+-|++-...++++.+..
T Consensus 232 --~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 232 --WLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred --ceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 12345677888999999999999998877654
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.59 E-value=0.0039 Score=45.74 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHHH
Q psy9227 28 IIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVF 107 (156)
Q Consensus 28 v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~ 107 (156)
++.++-.++.+.++++..++ +++.++..++..+.+.+=...=.++..|-....++..++..... ...
T Consensus 195 ~~~~~R~ki~~~L~~~~~~~--------S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~~~-----~~e 261 (292)
T PF10317_consen 195 VIFFLRRKILKFLNKKSSSM--------SERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYEHP-----FLE 261 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhc--------CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccccH-----HHH
Confidence 45555666666665522211 22244556678888888888888888888777777665544321 244
Q ss_pred HHHHHHHHhhhhhhHHHHHhcCHHHHHHHHh
Q psy9227 108 FITHSIAMSSTCYNPFLYAWLNDNFRKEFKQ 138 (156)
Q Consensus 108 ~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~ 138 (156)
.+...++.+.+.+||++....-+.+|++++|
T Consensus 262 ~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 262 YLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 5666678899999999999999999999875
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=97.52 E-value=0.0018 Score=48.57 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy9227 22 FIIPFFIIAFC----YIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVND 92 (156)
Q Consensus 22 ~~lPl~v~~~~----y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~ 92 (156)
..+|++++.+. |.+..+.+-...+.+++.-+++ +++....+-+-.+.+.++|.+||+|..+..++..
T Consensus 198 tY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~----ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 198 TYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTEN----ERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 34566666555 4444444444333343332222 2333344445566777799999999999877644
No 21
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.28 E-value=0.0015 Score=37.99 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCH
Q psy9227 60 RERKKRTNRMLIAMVFIFGFCWS-PINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130 (156)
Q Consensus 60 ~~~~~k~~~~~~~i~~~f~v~~~-P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~ 130 (156)
+++-+|.++.+++=-++|+++|+ |...-.+-......... ...+..++..+..+|..+|-++|++.-+
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p---~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGP---SFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---chHHHHHHHHHHHccCHHHhhheeeecc
Confidence 45566889999999999999999 87766665332221111 2346678888889999999999988654
No 22
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=96.82 E-value=0.11 Score=38.06 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHh
Q psy9227 16 IMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFI-FGFCWSPINVINLVNDLH 94 (156)
Q Consensus 16 ~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~-f~v~~~P~~i~~l~~~~~ 94 (156)
.......++....+++.-..+...++++.+ . ..+++.++.++|..+.+.+=+++ +++.-.|..........+
T Consensus 188 ~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~-~------~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~ 260 (302)
T PF10318_consen 188 IIIIIFLLIIFIQIIFFAFLIIYYLLKSQK-K------TMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFG 260 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch-h------hhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 333333333344444444555555555433 1 11223344555666555544433 344455887777664444
Q ss_pred hccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccc
Q psy9227 95 EDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPF 142 (156)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~ 142 (156)
.... .+..+...+...+..+.-++..+.++.+|+.+.++++|
T Consensus 261 ~~~q------~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 261 YYNQ------ALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred cccc------ccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 2221 24456667778899999999999999999999999986
No 23
>KOG4193|consensus
Probab=96.68 E-value=0.053 Score=43.85 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhH
Q psy9227 22 FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWF 101 (156)
Q Consensus 22 ~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~ 101 (156)
|+.|..+++.+++.++...-++-.+......... ++....+..+..+.++.++.+.|.--.....- + .+.
T Consensus 474 F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~----~---~~~ 543 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIA---SKLENISLIRSALALLFLLGLTWIFGIFSWLP----G---TSV 543 (610)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHhhcccccCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c---cch
Confidence 7788888888876655554433332222211111 11122266778888888888888643322221 1 111
Q ss_pred HHHHHHHHHHHHHHhhhh---hhHHHHHhcCHHHHHHHHhhcccccccCCC
Q psy9227 102 YYYVVFFITHSIAMSSTC---YNPFLYAWLNDNFRKEFKQVLPFFSSAGGA 149 (156)
Q Consensus 102 ~~~~~~~~~~~l~~~ns~---~nP~iY~~~~~~fr~~~~~~~~~~~~~~~~ 149 (156)
.+..++..+|+. +=.+.|++++++.|+..++.++|.+....+
T Consensus 544 ------v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~~ 588 (610)
T KOG4193|consen 544 ------VFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSSA 588 (610)
T ss_pred ------HHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCCC
Confidence 122233335554 567888999999999999999876655443
No 24
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=96.27 E-value=0.2 Score=37.03 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHH
Q psy9227 59 DRERKKRTNRMLIAMVFI-FGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135 (156)
Q Consensus 59 ~~~~~~k~~~~~~~i~~~-f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~ 135 (156)
..+-+++..+.+.+=++. -++|..|..+......++.+...+ ...........-+.+||+.-.++-+.||++
T Consensus 237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~-----~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGIDLGRW-----NNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCChhHH-----HHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 444555666666554333 578999999988777777665433 344555555677899999999999999985
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=96.22 E-value=0.0018 Score=47.70 Aligned_cols=112 Identities=20% Similarity=0.340 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHH
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIA-MVFIFGFCWSPINVINLV 90 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-i~~~f~v~~~P~~i~~l~ 90 (156)
...+........+.+.++++|-.++++++++..... +++.++-+++..+.+.+ ..+=.+..+.|..+....
T Consensus 195 ~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~--------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~ 266 (307)
T PF10326_consen 195 FIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM--------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFIL 266 (307)
T ss_pred heeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc--------ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeee
Confidence 344445556678889999999999999995432221 11223444555555544 334466788999988777
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHH
Q psy9227 91 NDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFK 137 (156)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~ 137 (156)
-.++-+.+. ...+...+..+.+++||++-.+.-+++|++++
T Consensus 267 p~~~i~~~~------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 267 PFFGIDLGF------FSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred eccCCCCCc------cccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 666544432 22344556678899999999999999999864
No 26
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.03 E-value=0.46 Score=36.09 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccc
Q psy9227 105 VVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPF 142 (156)
Q Consensus 105 ~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~ 142 (156)
....+......+++.+=|.+-....++.|+++++.+..
T Consensus 284 ~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~ 321 (365)
T PF03125_consen 284 ILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPK 321 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhh
Confidence 45566777788888888888888999999999987764
No 27
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=95.76 E-value=0.48 Score=34.16 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccc
Q psy9227 19 FSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVA 98 (156)
Q Consensus 19 ~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~ 98 (156)
...+++-.++.++++....+++++.+ ++.++.|++..+...+...++.+.-+...+.... ...+..+
T Consensus 174 ~~~~i~~~ii~i~~~~~~~~~l~~~~------------~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 240 (275)
T PF02118_consen 174 LIYFIIIIIITIITNIITYRRLRKLS------------KRIKSVERNLTIISFIISFVQLLIAIWQIINSFA-FFFDFLP 240 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhcccc
Confidence 33344445556667777777776632 1233456777777776666666555554443111 1111111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHH
Q psy9227 99 GWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135 (156)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~ 135 (156)
.......+.......-+...|++-...+++.|++
T Consensus 241 ---~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 241 ---ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 1222333444444455677899999999999986
No 28
>KOG4220|consensus
Probab=95.24 E-value=0.012 Score=44.85 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy9227 10 LLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKP 48 (156)
Q Consensus 10 ~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~ 48 (156)
+.+..+-.++..|-+|..+|+++|++|+++.+++.++..
T Consensus 190 np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~ 228 (503)
T KOG4220|consen 190 NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA 228 (503)
T ss_pred CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556667788999999999999999999998887543
No 29
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=94.33 E-value=1.6 Score=32.58 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHH
Q psy9227 56 EEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDL-HEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRK 134 (156)
Q Consensus 56 ~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~ 134 (156)
++.+.+++.+..+++..++.+..+.-+.+.+..+.... .++... ..+..+..+. .....++.+=|++.....++.|+
T Consensus 221 ~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r~ 298 (324)
T PF10292_consen 221 ERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSK-PNYFALAELN-HIFPLYSIISPLILYRKIKKIRK 298 (324)
T ss_pred hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCh-hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888877777777766655443 333333 3333333433 35566788899999999999888
Q ss_pred HHHhhccc
Q psy9227 135 EFKQVLPF 142 (156)
Q Consensus 135 ~~~~~~~~ 142 (156)
+..+-+..
T Consensus 299 ~~~~~l~~ 306 (324)
T PF10292_consen 299 KRKKRLEK 306 (324)
T ss_pred HHHHHHHH
Confidence 88766643
No 30
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=92.63 E-value=2.3 Score=31.07 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy9227 14 GTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDL 93 (156)
Q Consensus 14 ~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~ 93 (156)
.+.-..+.+++|+ +++..|+.+..++-..++... .+.|.++.+--..+ |++..++..++.+.+..
T Consensus 188 qiiE~ilQ~~IPi-~Il~iYiAIIiKI~~MKkssL-----------nK~Ei~ILKQAifI---FvlFQ~ss~VFl~~qt~ 252 (305)
T PF04789_consen 188 QIIEIILQFGIPI-FILVIYIAIIIKIIKMKKSSL-----------NKNEITILKQAIFI---FVLFQASSCVFLLCQTF 252 (305)
T ss_pred hHHHHHHHHhHHH-HHHHHHHHHHHHHHHHhhccC-----------CchhHHHHHHHHHH---HHHHHHHHHHHHhheee
Confidence 3466778899998 566778777776655332211 12355666665544 44445555555555444
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcc
Q psy9227 94 HEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLP 141 (156)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~ 141 (156)
.-.. .....+..+.+.+-...-+..|..+...++|.|+-+.....
T Consensus 253 ~~~~---~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~kv~ 297 (305)
T PF04789_consen 253 KFNV---ATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSSKVS 297 (305)
T ss_pred eecc---hHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHhhcc
Confidence 3222 22344566777777788889999999999999998876553
No 31
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.46 E-value=4.8 Score=30.25 Aligned_cols=83 Identities=2% Similarity=-0.012 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHH
Q psy9227 55 REEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRK 134 (156)
Q Consensus 55 ~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~ 134 (156)
..+...++....++.+..+.++=++|..-|.+...+.....+...+...+.+..+.....+.+-++-.+++...+..-++
T Consensus 223 ~~Ry~~~Eni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~lP~li~~~~~~~~~~ 302 (328)
T PF02117_consen 223 NSRYQKRENINSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAALSLPLLIIYRIRRIRRQ 302 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33445567778889999999999898888887766544444444445556666677777777777766666544444333
Q ss_pred HHH
Q psy9227 135 EFK 137 (156)
Q Consensus 135 ~~~ 137 (156)
.-+
T Consensus 303 R~~ 305 (328)
T PF02117_consen 303 RKR 305 (328)
T ss_pred HHH
Confidence 333
No 32
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=91.42 E-value=0.43 Score=35.43 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHH
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFY 102 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~ 102 (156)
..-.+.+++++..++.++|+.+.+.. +.+++++++++|+..+.+++++.+-++.- .++.+...+.+ +.
T Consensus 205 ~~~~~~iii~N~lm~~Klr~~k~~l~---~~~~s~~~~KAE~SLT~Tmi~mliP~i~n----~i~~i~~~~~~-----~~ 272 (307)
T PF10322_consen 205 IFWMISIIILNILMFFKLRKLKSSLS---SQRRSKQSRKAERSLTLTMISMLIPYITN----GIISISFLFFP-----SY 272 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---chhhcccchhhheeHHHHHHHHHHHHHHH----HHHHHHHhcCc-----hH
Confidence 33355777888999999988653111 11223345667777777777766554332 22222222211 11
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHH
Q psy9227 103 YYVVFFITHSIAMSSTCYNPFLYAWLNDNFRK 134 (156)
Q Consensus 103 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~ 134 (156)
...+..+--....+..++=|+++.+.++-||+
T Consensus 273 ~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkk 304 (307)
T PF10322_consen 273 SSYILLIRPFGNDCRTCIVPWYFYLTHPIFKK 304 (307)
T ss_pred HHHHHHHhhhhhccceeEEEEEeeecChhhcC
Confidence 11223333334444555556666666666654
No 33
>KOG4564|consensus
Probab=91.19 E-value=0.89 Score=35.76 Aligned_cols=102 Identities=12% Similarity=0.265 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHH
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFY 102 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~ 102 (156)
++++++=.+..+.|.+.+-+.-|..+...+ ...+|++|-.++++=+|.+-++.+.. .++.. ..
T Consensus 317 ~~ai~vNf~flinIvrILv~KLr~~~~~~~--------~~y~K~vKaTLvLIPLfGI~~ilf~~-------~P~~~--~~ 379 (473)
T KOG4564|consen 317 LLAILVNFIFLINIVRILVTKLRASNASET--------DQYRKLVKATLVLIPLFGIHYILFAF-------RPDED--TL 379 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccch--------HHHHHHHHHHHHHHHHcCCeeEEEEe-------cCchH--HH
Confidence 344455555666777777654443333321 12568888888888777776443321 11111 11
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcc
Q psy9227 103 YYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLP 141 (156)
Q Consensus 103 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~ 141 (156)
..+-..+...|...-=.+=.++|++.|+|.|.+++|.+.
T Consensus 380 ~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~ 418 (473)
T KOG4564|consen 380 REVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWS 418 (473)
T ss_pred HHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHH
Confidence 112223333444444446678999999999999999874
No 34
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=69.52 E-value=14 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy9227 60 RERKKRTNRMLIAMVFIFGFCWS 82 (156)
Q Consensus 60 ~~~~~k~~~~~~~i~~~f~v~~~ 82 (156)
+++.++.-.++..+++++++-|+
T Consensus 32 qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 32 QKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666555543
No 35
>KOG2575|consensus
Probab=69.45 E-value=6.1 Score=30.65 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy9227 63 KKRTNRMLIAMVFIFGFCWSPINVIN 88 (156)
Q Consensus 63 ~~k~~~~~~~i~~~f~v~~~P~~i~~ 88 (156)
-.+++++-++++++|.++|.|+....
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999998653
No 36
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=67.34 E-value=44 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy9227 60 RERKKRTNRMLIAMVFIFGFCWSPINVINLV 90 (156)
Q Consensus 60 ~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~ 90 (156)
.+-+++.-+......+.+.+...+..+....
T Consensus 89 ~~~~~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 89 EEYYRKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777766665
No 37
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=65.75 E-value=16 Score=20.90 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q psy9227 12 IYGTIMAFSQFIIPFFIIA-FCYIKVSLKLNDR 43 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~-~~y~~i~~~l~~~ 43 (156)
.|.++..++..+.|+.++. ++-.++.+.+.++
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ 51 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWKLAKAIEKE 51 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777788886665 4455666666553
No 38
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=65.60 E-value=49 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q psy9227 70 LIAMVFIFGFCWSPINVINLVN 91 (156)
Q Consensus 70 ~~~i~~~f~v~~~P~~i~~l~~ 91 (156)
++.+.++.+++.+|..+..++.
T Consensus 200 L~~la~~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 200 LLALALVIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999998883
No 39
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=64.76 E-value=15 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 14 GTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 14 ~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
..+...++.++|.+..+..|++.
T Consensus 7 gfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 7 GFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 44556677889999999998753
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=60.96 E-value=1.1e+02 Score=26.33 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLND-RAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN 91 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~ 91 (156)
|-....++...+-++++++.+..+..-... +++..+.... ..++.-..-+++.+.+.|+++|.-..+..++.
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~-------c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRG-------CSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccC-------CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445455556666666666544 2222222111 12233566788888999999999888887776
Q ss_pred HHhh
Q psy9227 92 DLHE 95 (156)
Q Consensus 92 ~~~~ 95 (156)
..+.
T Consensus 485 l~G~ 488 (806)
T PF05478_consen 485 LVGG 488 (806)
T ss_pred HHHh
Confidence 6554
No 41
>CHL00080 psbM photosystem II protein M
Probab=59.78 E-value=19 Score=17.28 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
..++...++..+|.+..++.|++.
T Consensus 6 lgfiAt~LFi~iPt~FLlilyvkT 29 (34)
T CHL00080 6 LAFIATALFILVPTAFLLIIYVKT 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHhheee
Confidence 345566677889999999988753
No 42
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=58.28 E-value=3.3 Score=29.23 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q psy9227 65 RTNRMLIAMVFIFGFCWSPIN 85 (156)
Q Consensus 65 k~~~~~~~i~~~f~v~~~P~~ 85 (156)
+..+..+.+...+.++|+...
T Consensus 195 ~~~~~~~~L~~llg~~w~~~~ 215 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFGI 215 (242)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHheeee
Confidence 477778888888899998843
No 43
>COG3924 Predicted membrane protein [Function unknown]
Probab=58.21 E-value=29 Score=19.90 Aligned_cols=35 Identities=17% Similarity=0.495 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9227 8 LGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLND 42 (156)
Q Consensus 8 ~~~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~ 42 (156)
++..-+-..+-...+.+|++.++.|+..|-...|.
T Consensus 37 ~G~~gfP~WFE~aCi~lPllFi~l~~~mvkfif~D 71 (80)
T COG3924 37 PGFTGFPLWFEMACILLPLLFIVLCWAMVKFIFRD 71 (80)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444555666778899999999999988766644
No 44
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=57.65 E-value=21 Score=17.06 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9227 14 GTIMAFSQFIIPFFIIAFCYIK 35 (156)
Q Consensus 14 ~~~~~~~~~~lPl~v~~~~y~~ 35 (156)
..+...++..+|.+..+..|++
T Consensus 7 ~fiAt~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 7 GFIATLLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 3455566778999999998875
No 45
>PF13853 7tm_4: Olfactory receptor
Probab=53.82 E-value=0.2 Score=32.77 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=49.8
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9227 3 SLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWS 82 (156)
Q Consensus 3 ~~~~~~~~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~ 82 (156)
+.++...+..+..+...+..+.|+.++++.|+.|...+.|.+.. +.++|+..+......+..+.+.
T Consensus 47 aC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki~S~--------------~~r~KAfsTC~sHL~vv~lfy~ 112 (144)
T PF13853_consen 47 ACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAVLKIPSA--------------EGRSKAFSTCSSHLTVVSLFYG 112 (144)
T ss_pred cCCchhhhheeeecccceeEEEEeeccccceeEEEehhhccccc--------------ccccccccccccCceEEEEeee
Confidence 45666666777777778888999999999999999988774321 2234666666666555555555
Q ss_pred HHHHHHH
Q psy9227 83 PINVINL 89 (156)
Q Consensus 83 P~~i~~l 89 (156)
|.....+
T Consensus 113 ~~~~~y~ 119 (144)
T PF13853_consen 113 TVIFMYL 119 (144)
T ss_pred eeEEEEe
Confidence 5444333
No 46
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.71 E-value=16 Score=20.22 Aligned_cols=31 Identities=3% Similarity=0.098 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLND 42 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~ 42 (156)
...+..+++++++-.++....+.+.-+++++
T Consensus 22 l~il~~f~~G~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=49.98 E-value=51 Score=19.29 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9227 10 LLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLND 42 (156)
Q Consensus 10 ~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~ 42 (156)
+....++..+ ++..|+-++.+.|..=.+..++
T Consensus 18 yl~~sI~s~l-~Cc~PlGi~Ai~~s~kv~~~~~ 49 (82)
T PF04505_consen 18 YLVLSIFSTL-CCCWPLGIVAIVYSSKVRSRYA 49 (82)
T ss_pred ceeHHHHHHH-HHHhhHHHHHheechhhHHHHH
Confidence 3333333333 3456888888887764444433
No 48
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=48.52 E-value=31 Score=16.27 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9227 15 TIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 15 ~~~~~~~~~lPl~v~~~~y~~i 36 (156)
.+...++..+|....+..|++.
T Consensus 8 fiAtaLfi~iPt~FLiilyvqT 29 (31)
T PF05151_consen 8 FIATALFILIPTAFLIILYVQT 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheEeee
Confidence 3445566788999999988864
No 49
>TIGR03753 blh_monoox beta-carotene 15,15'-monooxygenase, Brp/Blh family. This integral membrane protein family includes Brp (bacterio-opsin related protein) and Blh (Brp-like protein). Bacteriorhodopsin is a light-driven proton pump with a covalently bound retinal cofactor that appears to be derived beta-carotene. Blh has been shown to cleave beta-carotene to product two all-trans retinal molecules. Mammalian enzymes with similar enzymatic function are not multiple membrane spanning proteins and are not homologous.
Probab=45.67 E-value=1.2e+02 Score=22.13 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9227 11 LIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKL 46 (156)
Q Consensus 11 ~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~ 46 (156)
..........+..+|.++-...|-...+..|.-.+.
T Consensus 159 a~el~lL~~~f~~lppl~aF~~YFc~wHS~rh~~~~ 194 (259)
T TIGR03753 159 AGELLLLLALFALLPPLVAFGLYFCLWHSLRHVARI 194 (259)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 556677778888999999999999888887765443
No 50
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=44.56 E-value=19 Score=18.66 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
..++...++..+|.+.+++.|++.
T Consensus 6 lgfiAtaLFi~iPT~FLlilYVkT 29 (50)
T PRK14094 6 FGFVASLLFVGVPTIFLIGLFIST 29 (50)
T ss_pred HHHHHHHHHHHHHHHHhhheeEEe
Confidence 345566677889999998888754
No 51
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=41.04 E-value=1.5e+02 Score=22.25 Aligned_cols=27 Identities=15% Similarity=0.168 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy9227 64 KRTNRMLIAMVFIFGFCWSPINVINLV 90 (156)
Q Consensus 64 ~k~~~~~~~i~~~f~v~~~P~~i~~l~ 90 (156)
.++...+.++..+|.+.|...+--.-+
T Consensus 58 ~~~~~~~~~~y~~F~~~WGlNY~R~pl 84 (318)
T PF12725_consen 58 LNILFFLSVLYFLFYLLWGLNYYRPPL 84 (318)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcCH
Confidence 566777777777777777766544333
No 52
>PF15102 TMEM154: TMEM154 protein family
Probab=40.81 E-value=6.4 Score=25.89 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy9227 20 SQFIIPF 26 (156)
Q Consensus 20 ~~~~lPl 26 (156)
+.+++|+
T Consensus 59 LmIlIP~ 65 (146)
T PF15102_consen 59 LMILIPL 65 (146)
T ss_pred EEEeHHH
Confidence 3345553
No 53
>COG2322 Predicted membrane protein [Function unknown]
Probab=40.18 E-value=89 Score=21.22 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy9227 60 RERKKRTNRMLIAMVFIFGFCWSPINVINL 89 (156)
Q Consensus 60 ~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l 89 (156)
.++.+++..+-....++|+++++-.+...-
T Consensus 72 i~~Hk~aMltA~~l~l~FlvlYltr~~l~~ 101 (177)
T COG2322 72 IEKHKRAMLTAFTLALVFLVLYLTRHGLGG 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456667777778888889988887766544
No 54
>KOG0721|consensus
Probab=39.97 E-value=65 Score=22.90 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=9.8
Q ss_pred cCHHHHHHHHhhccc
Q psy9227 128 LNDNFRKEFKQVLPF 142 (156)
Q Consensus 128 ~~~~fr~~~~~~~~~ 142 (156)
..+|+|++.+++...
T Consensus 112 s~~eIKkaYR~LSik 126 (230)
T KOG0721|consen 112 SEKEIKKAYRRLSIK 126 (230)
T ss_pred CHHHHHHHHHHhhhh
Confidence 356777777776543
No 55
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=39.70 E-value=38 Score=19.83 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q psy9227 27 FIIAFCYIKVSLKLNDRAKLKPG 49 (156)
Q Consensus 27 ~v~~~~y~~i~~~l~~~~~~~~~ 49 (156)
+++++.|..+.+--+|+.++.+.
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHhhheecHHHHHHHHHHH
Confidence 55556677676666655544333
No 56
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=39.25 E-value=73 Score=18.20 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy9227 62 RKKRTNRMLIAMVFIFGFCWSPINVINLVNDL 93 (156)
Q Consensus 62 ~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~ 93 (156)
-+....+.+.++...+...|.+-.+..++..+
T Consensus 27 id~tlVRll~vl~~~~~~~~~~~ii~Yiia~~ 58 (70)
T COG1983 27 IDPTLVRLLFVLLTLFGGLTGFGIIAYIIAAL 58 (70)
T ss_pred CChHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 35677787777777776667766666666544
No 57
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=36.97 E-value=78 Score=19.22 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 13 YGTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 13 y~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
...+-..++.++|.+.++.+|++.
T Consensus 76 LafIATaLFIlIPTaFLLILYVQT 99 (113)
T PLN00090 76 GAYLAVALGTFLPCLFLINLFIQT 99 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555667789999999999864
No 58
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.05 E-value=90 Score=18.07 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy9227 21 QFIIPFFIIAFCYIKVSLKLNDR 43 (156)
Q Consensus 21 ~~~lPl~v~~~~y~~i~~~l~~~ 43 (156)
++++|+++.++.-.-++..++-.
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766555555555554433
No 59
>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....
Probab=36.01 E-value=82 Score=17.60 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy9227 8 LGLLIYGTIMAFSQFIIPFFI 28 (156)
Q Consensus 8 ~~~~~y~~~~~~~~~~lPl~v 28 (156)
....+.....+...|.+|+++
T Consensus 37 ~~~~~~~~~f~g~GF~~PF~~ 57 (65)
T PF02935_consen 37 WPFAVKFWGFFGSGFAAPFLI 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHH
Confidence 344466677788888999864
No 60
>PHA02650 hypothetical protein; Provisional
Probab=35.88 E-value=93 Score=18.20 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9227 20 SQFIIPFFIIAFCYIKVSL 38 (156)
Q Consensus 20 ~~~~lPl~v~~~~y~~i~~ 38 (156)
+..++-+++.++.|.+..+
T Consensus 56 i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455556666777776654
No 61
>PHA03234 DNA packaging protein UL33; Provisional
Probab=33.82 E-value=2.1e+02 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccccc
Q psy9227 107 FFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSS 145 (156)
Q Consensus 107 ~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~ 145 (156)
..++..=..+|+.+-.+.---..+++++.+++..+|+++
T Consensus 285 ~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~~~~~ 323 (338)
T PHA03234 285 RLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFKCNLC 323 (338)
T ss_pred HHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhc
Confidence 344444455899999999999999999999998766554
No 62
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.42 E-value=54 Score=19.62 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=4.9
Q ss_pred HHHHHHHHHhh
Q psy9227 71 IAMVFIFGFCW 81 (156)
Q Consensus 71 ~~i~~~f~v~~ 81 (156)
+.+++.+++||
T Consensus 45 il~VilwfvCC 55 (94)
T PF05393_consen 45 ILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 63
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=33.09 E-value=77 Score=16.43 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy9227 6 KGLGLLIYGTIMAFSQFIIPFFI 28 (156)
Q Consensus 6 ~~~~~~~y~~~~~~~~~~lPl~v 28 (156)
+.........+.+...|.+|+++
T Consensus 17 nk~~~~~~~~~ffg~GF~~PF~i 39 (46)
T cd00929 17 NKWRLTALFHLFFGSGFSAPFIV 39 (46)
T ss_pred ccchHHHHHHHHHHHHHhhhHHH
Confidence 33333444555888889999964
No 64
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.62 E-value=31 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAK 45 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~ 45 (156)
+.+++++.+.|..+++-=+++.+
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K 35 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMK 35 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHH
Confidence 34445566667777766555433
No 65
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=32.57 E-value=57 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy9227 62 RKKRTNRMLIAMVFIFGFCWSPINVI 87 (156)
Q Consensus 62 ~~~k~~~~~~~i~~~f~v~~~P~~i~ 87 (156)
.-.+..+.-.+++.+|.++|+|+...
T Consensus 219 ~~~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 219 SIKRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999744
No 66
>PHA02844 putative transmembrane protein; Provisional
Probab=30.42 E-value=1.1e+02 Score=17.59 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 11 LIYGTIMAFSQFIIPFFIIAFCYIKVS 37 (156)
Q Consensus 11 ~~y~~~~~~~~~~lPl~v~~~~y~~i~ 37 (156)
.++.++ +.+.+++-+++.++.|.+..
T Consensus 47 ~~~~~i-i~i~~v~~~~~~~flYLK~~ 72 (75)
T PHA02844 47 STKIWI-LTIIFVVFATFLTFLYLKAV 72 (75)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHhee
Confidence 334443 33555666667777777654
No 67
>KOG3500|consensus
Probab=29.39 E-value=90 Score=18.38 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy9227 63 KKRTNRMLIAMVFIFGFCWSPINVINLVND 92 (156)
Q Consensus 63 ~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~ 92 (156)
++.+++.+++++. ++||+-..+..+.+.
T Consensus 30 ~~~li~~~lvlTA--VCCwlfWli~ylaQl 57 (84)
T KOG3500|consen 30 NRGLIRCMLVLTA--VCCWLFWLIVYLAQL 57 (84)
T ss_pred CcChhHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 4567777776666 888887666666543
No 68
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=28.59 E-value=36 Score=14.47 Aligned_cols=10 Identities=60% Similarity=0.880 Sum_probs=6.2
Q ss_pred cCHHHHHHHH
Q psy9227 128 LNDNFRKEFK 137 (156)
Q Consensus 128 ~~~~fr~~~~ 137 (156)
.|.+||+-|.
T Consensus 11 SNddFrkmfl 20 (21)
T PF05391_consen 11 SNDDFRKMFL 20 (21)
T ss_pred chHHHHHHHc
Confidence 4667777653
No 69
>PRK15445 arsenical pump membrane protein; Provisional
Probab=28.40 E-value=2.9e+02 Score=21.52 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9227 25 PFFIIAFCYIKVSLKLN 41 (156)
Q Consensus 25 Pl~v~~~~y~~i~~~l~ 41 (156)
|.++.+.....+...+.
T Consensus 181 ~~ii~~~~~~~~~~~~~ 197 (427)
T PRK15445 181 VNLVSLAASLLVLWLYF 197 (427)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333344433
No 70
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=27.62 E-value=1.1e+02 Score=16.56 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAK 45 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~ 45 (156)
++.+++++++|.-++.--|++++
T Consensus 6 ~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 34455566777777776655443
No 71
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.39 E-value=2e+02 Score=19.48 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=15.8
Q ss_pred hhhhhHHHHHhcCHHHHHHHHhhcc
Q psy9227 117 STCYNPFLYAWLNDNFRKEFKQVLP 141 (156)
Q Consensus 117 ns~~nP~iY~~~~~~fr~~~~~~~~ 141 (156)
.+.+..+.|.|.-|+--...-+.+.
T Consensus 73 ~p~m~Ev~YvW~LKq~ln~I~rkl~ 97 (165)
T PF11286_consen 73 HPFMTEVYYVWQLKQLLNKIYRKLH 97 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788898876655554444443
No 72
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=26.83 E-value=2.1e+02 Score=19.50 Aligned_cols=61 Identities=13% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy9227 20 SQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLV 90 (156)
Q Consensus 20 ~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~ 90 (156)
-.+++|++..+..+..+....+ . ....+. ......|....+..++..++....|..+...+
T Consensus 119 p~~iLPil~~~~~~~~~~~~~~-~-~~~~~~--------~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw 179 (198)
T PF02096_consen 119 PYFILPILAGASMFLNQELSMK-N-SKQKSP--------QQAKMMKIMLYIMPLMFLFFTSFFPAALFLYW 179 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-c-cccCCc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888877777777766543 2 000000 11223344444666666678888886665554
No 73
>PRK11056 hypothetical protein; Provisional
Probab=26.16 E-value=1.4e+02 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy9227 23 IIPFFIIAFCYIKVSLKLNDRAK 45 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~~~~ 45 (156)
++|.++++.+-..|.++++.+++
T Consensus 94 F~p~il~~~L~~Wi~~kl~~~~~ 116 (120)
T PRK11056 94 FFPAVLSVILVFWIGRKLRNRKK 116 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc
Confidence 57888999999999999877544
No 74
>PRK12768 CysZ-like protein; Reviewed
Probab=25.80 E-value=2.6e+02 Score=20.17 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q psy9227 64 KRTNRMLIAMVFIFGFCWSPIN 85 (156)
Q Consensus 64 ~k~~~~~~~i~~~f~v~~~P~~ 85 (156)
++-.+....-.++..++..|..
T Consensus 187 ~~r~~~~~fG~~~all~~IP~v 208 (240)
T PRK12768 187 KHATTVFLAGLVIAAFVAIPIV 208 (240)
T ss_pred hcccHHHHHHHHHHHHHHhHHH
Confidence 3344667777777888888865
No 75
>PHA02692 hypothetical protein; Provisional
Probab=25.24 E-value=1.4e+02 Score=16.99 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 10 LLIYGTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 10 ~~~y~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
..++.+++..+..++-+++.++.|.+.
T Consensus 43 ~~~~~~ii~~~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 43 VPWTTVFLIGLIAAAIGVLLCFHYLKL 69 (70)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455544455556666777777654
No 76
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.85 E-value=1.7e+02 Score=20.44 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhcccC
Q psy9227 29 IAFCYIKVSLKLNDRAKLK 47 (156)
Q Consensus 29 ~~~~y~~i~~~l~~~~~~~ 47 (156)
.-+.|-.|...+.+|...+
T Consensus 71 ~k~~~~pI~~vLe~R~~~I 89 (204)
T PRK09174 71 SRVILPRIGGIIETRRDRI 89 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655443
No 77
>PTZ00370 STEVOR; Provisional
Probab=24.72 E-value=1.9e+02 Score=21.53 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy9227 26 FFIIAFCYIKVSLK 39 (156)
Q Consensus 26 l~v~~~~y~~i~~~ 39 (156)
.++++++|+.++++
T Consensus 268 ~vvliilYiwlyrr 281 (296)
T PTZ00370 268 AVVLIILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 44566667766655
No 78
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.30 E-value=1.8e+02 Score=17.78 Aligned_cols=12 Identities=17% Similarity=0.262 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy9227 26 FFIIAFCYIKVS 37 (156)
Q Consensus 26 l~v~~~~y~~i~ 37 (156)
++++++.-..|+
T Consensus 27 FiILLIi~~~IW 38 (121)
T PF10669_consen 27 FIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHh
Confidence 333333333443
No 79
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=23.75 E-value=3.4e+02 Score=21.12 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9227 14 GTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKL 46 (156)
Q Consensus 14 ~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~ 46 (156)
.....+..-++|++.++..-+++.|..+.++++
T Consensus 302 ~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~ 334 (374)
T PF01528_consen 302 HTGIAINLAVIAIICLIMMVVRLVRAFLYHRRR 334 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445556778888888888888888877653
No 80
>PHA02819 hypothetical protein; Provisional
Probab=23.74 E-value=1.5e+02 Score=16.87 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9227 20 SQFIIPFFIIAFCYIKVS 37 (156)
Q Consensus 20 ~~~~lPl~v~~~~y~~i~ 37 (156)
+..++-+++.++.|.+..
T Consensus 53 l~~~~~~~~~~flYLK~~ 70 (71)
T PHA02819 53 LVTIVFVIIFIIFYLKVI 70 (71)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555667777777653
No 81
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=23.73 E-value=3.1e+02 Score=21.92 Aligned_cols=66 Identities=3% Similarity=-0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy9227 18 AFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGS--KNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVI 87 (156)
Q Consensus 18 ~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~ 87 (156)
-.+...+|+.+..+.+.-+.-.+....|++-+. +.+ ...++-+|+.+.-.++.+++.+.|.-....
T Consensus 209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~----~a~~k~~rii~~gs~i~lv~y~fwv~S~~g 276 (443)
T PRK13629 209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD----FTERKCSQIISRASMLMVAVVMFFAFSCLF 276 (443)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999998888887654433210 000 012333455555555555555555544433
No 82
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=23.73 E-value=2.8e+02 Score=19.90 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy9227 61 ERKKRTNRMLIAMVFIFGFCWSPINVINLVNDL 93 (156)
Q Consensus 61 ~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~ 93 (156)
+-++|..+.+..+.+.+++||.|++.-.+++..
T Consensus 8 ELR~Rli~~~i~~~~~~~~~~~~~~~~~i~~~l 40 (237)
T TIGR01912 8 TFRLILLLVALAIVTGSVLGWLTIFTPFIIAAL 40 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999999999777665555443
No 83
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.64 E-value=1.5e+02 Score=18.77 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q psy9227 22 FIIPFFIIAFCYIKVSLKLNDRAK 45 (156)
Q Consensus 22 ~~lPl~v~~~~y~~i~~~l~~~~~ 45 (156)
-++|.++++.+-..|.++++.+.+
T Consensus 93 NFfp~il~l~L~~Wi~~kl~~~k~ 116 (117)
T PF07226_consen 93 NFFPSILCLILVFWIGYKLGFRKR 116 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Confidence 367888888888889988876543
No 84
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.49 E-value=1.6e+02 Score=17.05 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9227 21 QFIIPFFIIAFCYIKVSLKLNDRAKL 46 (156)
Q Consensus 21 ~~~lPl~v~~~~y~~i~~~l~~~~~~ 46 (156)
++.+|+++-+..-.-++..+.-+.+.
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccc
Confidence 45566666655555566665444433
No 85
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.28 E-value=2.1e+02 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 12 IYGTIMAFSQFIIPFFIIAFCYI 34 (156)
Q Consensus 12 ~y~~~~~~~~~~lPl~v~~~~y~ 34 (156)
+..++..++..++|++-+++|-.
T Consensus 95 v~~~i~ll~~il~P~vg~~fCcC 117 (806)
T PF05478_consen 95 VCAVIGLLFIILMPLVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344445556677777766655
No 86
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.15 E-value=2.1e+02 Score=19.47 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhcccCC
Q psy9227 30 AFCYIKVSLKLNDRAKLKP 48 (156)
Q Consensus 30 ~~~y~~i~~~l~~~~~~~~ 48 (156)
-+.|-.|...+.+|.....
T Consensus 50 k~l~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 50 RVALPRIGAVLAERQGTIT 68 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555443
No 87
>PHA01815 hypothetical protein
Probab=22.90 E-value=1.3e+02 Score=15.54 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 16 IMAFSQFIIPFFIIAFCYIKVSLK 39 (156)
Q Consensus 16 ~~~~~~~~lPl~v~~~~y~~i~~~ 39 (156)
+.+.+.|++.+++....|+++..-
T Consensus 9 ivfllaflitliilmt~~irvsfg 32 (55)
T PHA01815 9 IVFLLAFLITLIILMTLHIRVSFG 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655556555443
No 88
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=22.46 E-value=2.9e+02 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9227 16 IMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 16 ~~~~~~~~lPl~v~~~~y~~i 36 (156)
...++..++.++....++.++
T Consensus 175 ~~~i~~~ii~i~~~~~~~~~l 195 (275)
T PF02118_consen 175 IYFIIIIIITIITNIITYRRL 195 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444443
No 89
>PHA02909 hypothetical protein; Provisional
Probab=21.82 E-value=1.5e+02 Score=16.03 Aligned_cols=22 Identities=23% Similarity=0.479 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9227 17 MAFSQFIIPFFIIAFCYIKVSL 38 (156)
Q Consensus 17 ~~~~~~~lPl~v~~~~y~~i~~ 38 (156)
.+++.|+--+.++.+.|+.|..
T Consensus 40 lfviiflsmftilacsyvyiai 61 (72)
T PHA02909 40 LFVIIFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554443
No 90
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.77 E-value=1.6e+02 Score=16.27 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9227 20 SQFIIPFFIIAFCYIKVSLKLNDRAKL 46 (156)
Q Consensus 20 ~~~~lPl~v~~~~y~~i~~~l~~~~~~ 46 (156)
...+.-+.+.++.+..++...|++.|.
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 333444455566666677777665553
No 91
>PLN00085 photosystem II reaction center protein M (PsbM); Provisional
Probab=21.54 E-value=1.1e+02 Score=19.45 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9227 14 GTIMAFSQFIIPFFIIAFCYIKV 36 (156)
Q Consensus 14 ~~~~~~~~~~lPl~v~~~~y~~i 36 (156)
.++-..++.++|...+++.|++.
T Consensus 84 gfIAtaLFIlIPTaFLLILYVkT 106 (149)
T PLN00085 84 GVIATALFIIIPTSFLIILYVKS 106 (149)
T ss_pred HHHHHHHHHHHHHHHHHHheeee
Confidence 44555667788888888888754
No 92
>PLN03190 aminophospholipid translocase; Provisional
Probab=21.43 E-value=4.4e+02 Score=24.05 Aligned_cols=68 Identities=9% Similarity=-0.024 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHh
Q psy9227 65 RTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQ 138 (156)
Q Consensus 65 k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~ 138 (156)
|..+++.-..==-++.-+|.+.+.++..+++......+. ..+...+-.++.|++|+++.+++......
T Consensus 932 R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg~~ly~~~~------~~~yN~~fTslPii~~~ifD~dv~~~~l~ 999 (1178)
T PLN03190 932 RMGYMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWS------SVLYSVIYTALPTIVVGILDKDLSRRTLL 999 (1178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH------HHHHHHHHHhHHHHHHHHhcccCCHHHHH
Confidence 333433333322333444455555544444433222222 22222356677889999999887776543
No 93
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.41 E-value=27 Score=21.97 Aligned_cols=9 Identities=22% Similarity=0.238 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy9227 24 IPFFIIAFC 32 (156)
Q Consensus 24 lPl~v~~~~ 32 (156)
+|+++++..
T Consensus 7 l~~vv~~~i 15 (113)
T PRK06531 7 IMFVVMLGL 15 (113)
T ss_pred HHHHHHHHH
Confidence 444444433
No 94
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.33 E-value=30 Score=20.41 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q psy9227 29 IAFCYIKVSLKLND 42 (156)
Q Consensus 29 ~~~~y~~i~~~l~~ 42 (156)
+++.|..+.+--+|
T Consensus 13 ~~i~yf~~~rpqkK 26 (84)
T TIGR00739 13 FLIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHHheechHHH
Confidence 44556666554444
No 95
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.20 E-value=36 Score=17.10 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9227 23 IIPFFIIAFCYIKVSLKLND 42 (156)
Q Consensus 23 ~lPl~v~~~~y~~i~~~l~~ 42 (156)
.+|..+++..-..++...||
T Consensus 18 vVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 18 VVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EechHHHHHHHHHHhheEEe
Confidence 46666666665555554444
No 96
>PHA02754 hypothetical protein; Provisional
Probab=21.15 E-value=82 Score=17.22 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.0
Q ss_pred HhcCHHHHHHHHhh
Q psy9227 126 AWLNDNFRKEFKQV 139 (156)
Q Consensus 126 ~~~~~~fr~~~~~~ 139 (156)
++++++|.++++.+
T Consensus 10 ~i~eK~Fke~MRel 23 (67)
T PHA02754 10 AIMEKDFKEAMREL 23 (67)
T ss_pred HHHHhHHHHHHHHH
Confidence 56788999888765
No 97
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=20.93 E-value=1.7e+02 Score=16.39 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy9227 21 QFIIPFFIIAFCYIKVSLKLNDRAKLK 47 (156)
Q Consensus 21 ~~~lPl~v~~~~y~~i~~~l~~~~~~~ 47 (156)
...+|++.+.=....++..+++..+..
T Consensus 13 l~~l~v~tigPA~~Al~~~~~~~~~~~ 39 (77)
T PF04854_consen 13 LAGLPVFTIGPATAALYYVVRKWVRDE 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456777777777888888887766655
No 98
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.90 E-value=1.4e+02 Score=16.48 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy9227 63 KKRTNRMLIAMVFIFGFCWSPINVINLV 90 (156)
Q Consensus 63 ~~k~~~~~~~i~~~f~v~~~P~~i~~l~ 90 (156)
..+.++.++++...+++.-+-|..+.-+
T Consensus 6 ~~~mtriVLLISfiIlfgRl~Y~~I~a~ 33 (59)
T PF11119_consen 6 NSRMTRIVLLISFIILFGRLIYSAIGAW 33 (59)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3466666666666655555555554444
No 99
>KOG3827|consensus
Probab=20.63 E-value=2.3e+02 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy9227 62 RKKRTNRMLIAMVFIFGFCWSPINVINLVNDL 93 (156)
Q Consensus 62 ~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~ 93 (156)
-+.|--.++++-.++|+++|+-+-++..+.++
T Consensus 58 VD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~ 89 (400)
T KOG3827|consen 58 VDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAY 89 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666688999999999999999887655443
No 100
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=20.01 E-value=65 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=14.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHhh
Q psy9227 74 VFIFGFCWSPINVINLVNDLHE 95 (156)
Q Consensus 74 ~~~f~v~~~P~~i~~l~~~~~~ 95 (156)
.+.|.+.|.--++..+.+.-..
T Consensus 31 il~f~~lWqglFiwlF~qIrkK 52 (164)
T PF10624_consen 31 ILLFIVLWQGLFIWLFIQIRKK 52 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777777777776666444
Done!