RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9227
(156 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 76.2 bits (188), Expect = 2e-17
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 8 LGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTN 67
Y + F++P +I CY + L RA+ +R ++++
Sbjct: 138 STKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRS---SSKERKAA 194
Query: 68 RMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLY 125
+ML+ +V +F CW P +++ L++ L + W IT +A ++C NP +Y
Sbjct: 195 KMLLVVVVVFVLCWLPYHIVLLLDSLCPL-SIWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 49.4 bits (118), Expect = 1e-07
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 25/142 (17%)
Query: 17 MAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFI 76
+ +IP I+ +CY K+ + L K K + K+ ++++ +V +
Sbjct: 207 INIIGMLIPLTILLYCYSKILITLKGINKSK--------------KNKKAIKLVLIIVIL 252
Query: 77 FGFCWSPINVINLVNDLH--------EDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWL 128
F W P NV V LH + V Y +T I++S C NP +YA++
Sbjct: 253 FVIFWLPFNVSVFVYSLHILHFKSGCKAVK---YIQYALHVTEIISLSHCCINPLIYAFV 309
Query: 129 NDNFRKEFKQVLPFFSSAGGAS 150
++ F K K+ L ++ G S
Sbjct: 310 SEFFNKHKKKSLKLMFTSSGKS 331
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 48.9 bits (116), Expect = 2e-07
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 25/121 (20%)
Query: 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWS 82
IP I AFCYIK+ LKL ++ + +K ++ ++ ++ CW
Sbjct: 283 FIPIIIFAFCYIKIILKL---------------KQLKKSKKTKSIIIVSIIIICSLICWI 327
Query: 83 PINVINLVNDLH----------EDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNF 132
P+N++ L ++ E + G+ + +I+++ C NP +Y + +NF
Sbjct: 328 PLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENF 387
Query: 133 R 133
R
Sbjct: 388 R 388
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 40.3 bits (94), Expect = 2e-04
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWS 82
+IP I+ +CY K+ L KN + + K R+ ++++ +V W
Sbjct: 199 VIPLIILIYCYSKILYTL----------KNCKNKN-----KTRSIKIILTVVTFTVVFWV 243
Query: 83 PINVINLVNDLHE----DVAGWFYYYVVFFI--THSIAMSSTCYNPFLYAWLNDNFRKEF 136
P N++ +N L D+ + + +V+ I I+ C NP +YA++ NF+K F
Sbjct: 244 PFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF 303
Query: 137 KQVL 140
K +
Sbjct: 304 KNMF 307
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 30.4 bits (69), Expect = 0.36
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 3 SLSKGLGLLIYGTIMAFSQFI---IPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWD 59
+ G+G L+Y T+ + F I A + V + ++++ S + R+ +
Sbjct: 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTRE 201
Query: 60 RERKKRTN---RMLIAMVFIFGFCWSPINVINLV 90
+ N R L+ + +F ++P V
Sbjct: 202 GIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 28.7 bits (65), Expect = 1.2
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 26/143 (18%)
Query: 1 MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDR 60
L+L+ + + + + ++ +II K ++ +
Sbjct: 138 PLALNGTAFRIFTLSSVIINVIVLIVYIILIIIFK------------------KKGQTTN 179
Query: 61 ERKKRTNRMLIAMVFIFGFCWSPINVINLVN---DLHEDVAGWFYYYVVFFITHSIAMSS 117
K+ + L V IF F W + N V +V Y F+ S
Sbjct: 180 SDSKKVFKSLQVTVIIFIFGWFTSTIANTVFLLLTEDGEVENIIQMYAGIFV-----NLS 234
Query: 118 TCYNPFLYAWLNDNFRKEFKQVL 140
N F+ W + +RK F+++
Sbjct: 235 FSQNFFVTYWRSSEYRKAFRRLW 257
>gnl|CDD|225401 COG2845, COG2845, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 354
Score = 27.8 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 33 YIKVSLKLNDRAKLKPGSKNL--RREEWDRERKKRTNRML 70
+ V L NDR K G R +EW +E +KR + +L
Sbjct: 180 AVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAIL 219
>gnl|CDD|129902 TIGR00822, EII-Sor, PTS system, mannose/fructose/sorbose family,
IIC component. Bacterial PTS transporters transport and
concomitantly phosphorylate their sugar substrates, and
typically consist of multiple subunits or protein
domains. The Man (PTS splinter group) family is unique
in several respects among PTS permease families. It is
the only PTS family in which members possess a IID
protein. It is the only PTS family in which the IIB
constituent is phosphorylated on a histidyl rather than
a cysteyl residue. Its permease members exhibit broad
specificity for a range of sugars, rather than being
specific for just one or a few sugars. The mannose
permease of E. coli, for example, can transport and
phosphorylate glucose, mannose, fructose,
glucosamine,N-acetylglucosamine, and other sugars. Other
members of this family can transport sorbose, fructose
and N-acetylglucosamine. This family is specific for the
sorbose-specific IIC subunits of this family of PTS
transporters [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids, Signal
transduction, PTS].
Length = 265
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 7 GLGLLIYGTIMAFSQFIIPFFIIAF---CYIKVSL 38
G +++ M F +++PFF + F Y SL
Sbjct: 192 GYAMVLR---MMFKAYLMPFFYLGFLFAAYTDFSL 223
>gnl|CDD|184415 PRK13953, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 125
Score = 26.3 bits (58), Expect = 5.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 2 LSLSKGLGLLIYGTIMAFSQFIIPFFIIAFC---YIKVSLKLNDRAK 45
LS G ++ YG AF Q I+ F IIAF ++KV + +
Sbjct: 55 LSWKVGKSVIQYG---AFIQSIVDFLIIAFAIFIFVKVLTSFIKKKE 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.448
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,050,805
Number of extensions: 735195
Number of successful extensions: 1348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 62
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.9 bits)