RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9227
(156 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 144 bits (366), Expect = 5e-43
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Query: 11 LIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRML 70
+Y + + +P +I + Y V + L A PG + R E K++ +M+
Sbjct: 194 KVYHICVTVLIYFLPLLVIGYAYTVVGITL--WASEIPGDSSDRYHEQVS-AKRKVVKMM 250
Query: 71 IAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130
I +V F CW P ++ L+ ++ D+ + V+ +AMSST YNP +Y LND
Sbjct: 251 IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLND 310
Query: 131 NFRKEFKQVLPFFSSAGGASSRSAS 155
FR FK
Sbjct: 311 RFRLGFKHAFRCCPFISAGDYEGLE 335
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 127 bits (320), Expect = 8e-36
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 11 LIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRML 70
++ + FI+P +I+ CY + +L +L GS+ R +R R++
Sbjct: 287 PVFAICIFLFSFIVPVLVISVCYSLMIRRLR-GVRLLSGSREKDR------NLRRITRLV 339
Query: 71 IAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130
+ +V +F CW+P+ V L L + + ++ ++C NP LYA+L++
Sbjct: 340 LVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAI-LRFCTALGYVNSCLNPILYAFLDE 398
Query: 131 NFRKEFKQVL 140
NF+ F++
Sbjct: 399 NFKACFRKFC 408
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 102 bits (255), Expect = 2e-26
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 13 YGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAK------LKPGSKNLRREEWDRERKKRT 66
M F P II FCY + + +++ K + +K LR+ + + R
Sbjct: 200 NILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRL 259
Query: 67 NRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYA 126
++ I +V F WSP V+ L+ + + A +S +NP +Y+
Sbjct: 260 AKISIVIVSQFLLSWSPYAVVALLAQFGP---LEWVTPYAAQLPVMFAKASAIHNPMIYS 316
Query: 127 WLNDNFRKEFKQVLPFFSSAGGASSRSAS 155
+ FR+ Q P+ + +
Sbjct: 317 VSHPKFREAISQTFPWVLTCCQFDDKETE 345
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 99.8 bits (249), Expect = 6e-26
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 9/154 (5%)
Query: 2 LSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRE 61
+ + + M FIIP +I FCY ++ + + A + S ++ E
Sbjct: 193 YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAE---- 248
Query: 62 RKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYN 121
K RM+I MV F CW P + H+ G + + I A +S YN
Sbjct: 249 --KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYN 303
Query: 122 PFLYAWLNDNFRKEFKQVLPFFSSAGGASSRSAS 155
P +Y +N FR L + G S +
Sbjct: 304 PVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTT 337
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 74.3 bits (182), Expect = 2e-16
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 54 RREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSI 113
+R RM++ +V +F CW+PI++ ++ + + V + ++
Sbjct: 369 WDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIK-ALITIPETTFQTVSWHFCIAL 427
Query: 114 AMSSTCYNPFLYAWLNDNFRKEFKQVL 140
+++C NP LYA+L++NF++ F++
Sbjct: 428 GYTNSCLNPVLYAFLDENFKRCFREFC 454
Score = 37.3 bits (86), Expect = 0.001
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 17/70 (24%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCW 81
FI+P II CY + L+L R+ +
Sbjct: 190 FIMPVLIITVCYGLMILRL-----------------KSVRNIFEMLRIDEGLRLKIYKNT 232
Query: 82 SPINVINLVN 91
I + +
Sbjct: 233 EGYYTIGIGH 242
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 65.5 bits (160), Expect = 1e-13
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLI 71
Y + F IP I+ F ++V + ++ + + + R+ + + L
Sbjct: 176 AYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLG 235
Query: 72 AMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDN 131
++ +F CW P ++N+VN + D+ + + ++ + +++ NP +Y + +
Sbjct: 236 IIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGY----ANSAMNPIIYCR-SPD 290
Query: 132 FRKEFKQVLPF 142
FRK FK++L F
Sbjct: 291 FRKAFKRLLAF 301
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 61.8 bits (150), Expect = 4e-12
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 52 NLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN---DLHEDVAGWFYY---YV 105
+K++ + + ++ F CW P + ++ L G + +
Sbjct: 397 TWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHK 456
Query: 106 VFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSS 145
IT ++A C NP LYA+L F+ + L
Sbjct: 457 WISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496
Score = 38.0 bits (88), Expect = 7e-04
Identities = 7/70 (10%), Positives = 16/70 (22%), Gaps = 16/70 (22%)
Query: 22 FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCW 81
I+P +I CY + + + R+ +
Sbjct: 218 LILPGIVILSCYCII----------------ISKLSHSGSNIFEMLRIDEGLRLKIYKDT 261
Query: 82 SPINVINLVN 91
I + +
Sbjct: 262 EGYYTIGIGH 271
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 55.9 bits (134), Expect = 4e-10
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 43 RAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVA--GW 100
R + +++ + L +V +F CW P+++IN D +
Sbjct: 370 RVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 429
Query: 101 FYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
+ Y+ ++H +S NPF+YA+ FR+ F++++
Sbjct: 430 WLMYLAIVLSH---TNSVV-NPFIYAYRIREFRQTFRKII 465
Score = 25.9 bits (56), Expect = 8.1
Identities = 4/48 (8%), Positives = 16/48 (33%)
Query: 18 AFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKR 65
F+ ++P ++ Y+++ L + + + +
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 54.5 bits (131), Expect = 1e-09
Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRE---------- 61
Y + F +P I+ F Y +V + + + S+ + +
Sbjct: 347 AYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHG 406
Query: 62 ---------RKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHS 112
++ + + L ++ F CW P ++N+V+ + +++ Y ++ +I +
Sbjct: 407 LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY- 465
Query: 113 IAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
++S NP +Y + +FR F+++L
Sbjct: 466 --VNSGF-NPLIYCR-SPDFRIAFQELL 489
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 51.8 bits (123), Expect = 1e-08
Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 60 RERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTC 119
+ +I ++ +F CW+P+ ++ L++ + + +F+ +A+ ++
Sbjct: 413 SSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV--LAVLNSG 470
Query: 120 YNPFLYAWLNDNFRKEFKQVL 140
NP +Y N R+ F +++
Sbjct: 471 TNPIIYTLTNKEMRRAFIRIM 491
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 50.5 bits (120), Expect = 3e-08
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 29 IAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVIN 88
+A + + R+++ + L ++ F CW P +
Sbjct: 334 LAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFF 393
Query: 89 LVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
+V ++ + ++ + ++ST NP +Y N+NF+K FK++L
Sbjct: 394 MVIAFCKNCCNEHLHMFTIWLGY---INSTL-NPLIYPLCNENFKKTFKRIL 441
Score = 26.2 bits (57), Expect = 5.0
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKN 52
+ + A F +P ++ + Y K+ + + +
Sbjct: 170 WFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRI 210
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 48.9 bits (116), Expect = 1e-07
Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 47 KPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVV 106
K L R +++ + L +V +F CW P+++IN D + + +
Sbjct: 333 AYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--L 390
Query: 107 FFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
++ ++ +++ NPF+YA+ FR+ F++++
Sbjct: 391 MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 424
Score = 25.4 bits (55), Expect = 9.2
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 18 AFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGS 50
F+ ++P ++ Y+++ L + +
Sbjct: 207 FFACVLVPLLLMLGVYLRIFLAARRQLADLEDN 239
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 48.6 bits (115), Expect = 1e-07
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 50 SKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFI 109
R+K+ R ++A++ F W+P NV+ L+N + + +++
Sbjct: 370 RTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWL 429
Query: 110 THSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
+ ++ST NP YA N F+K FK +L
Sbjct: 430 CY---INSTI-NPACYALCNATFKKTFKHLL 456
Score = 26.2 bits (57), Expect = 6.0
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSK 51
A + F +P I+ Y +S R + +
Sbjct: 185 AVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLR 224
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 47.1 bits (111), Expect = 6e-07
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 43 RAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFY 102
+ + R+K+ +M+ ++ F CW P + +++N +
Sbjct: 376 KRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT---CHV 432
Query: 103 YYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
++ T + ++ NP +Y N FRK F ++L
Sbjct: 433 SPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
Score = 30.5 bits (68), Expect = 0.21
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLI 71
IY ++++F +PF + Y ++ + L R + K + LR +E R + +
Sbjct: 199 IYSSVVSF---YLPFGVTVLVYARIYVVLKQRRR-KNIFEMLRIDEGLRLKIYKDTEGYY 254
Query: 72 AMVFIFGFCWSP 83
+ SP
Sbjct: 255 TIGIGHLLTKSP 266
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 43.5 bits (102), Expect = 8e-06
Identities = 17/91 (18%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 50 SKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFI 109
++ + + L ++ F CW P ++N+V+ + +++ Y ++ +I
Sbjct: 390 RTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWI 449
Query: 110 THSIAMSSTCYNPFLYAWLNDNFRKEFKQVL 140
+ ++S NP +Y + +FR F+++L
Sbjct: 450 GY---VNSGF-NPLIYC-RSPDFRIAFQELL 475
Score = 26.6 bits (58), Expect = 4.3
Identities = 7/58 (12%), Positives = 16/58 (27%)
Query: 12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRM 69
Y + F +P I+ F Y +V + + + + +
Sbjct: 205 AYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYT 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.57
Identities = 30/205 (14%), Positives = 55/205 (26%), Gaps = 63/205 (30%)
Query: 1 MLSLSKGLGLLIYG------TIMAFS-------QFIIPFFIIAFCYIKVSLKLNDRAKLK 47
+L L +LI G T +A Q + F I F ++ + + L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--F-WLNLKNCNSPETVLE 200
Query: 48 P-----------------GSKNLR-REEWDRERKKRT------NRMLIAM--VFIFGFCW 81
S N++ R + +R L+ + V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV------Q 254
Query: 82 SPINVIN--------LV---NDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLN- 129
+ N L+ D + HS+ ++ L +L+
Sbjct: 255 NA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 130 --DNFRKEFKQVLPFFSSAGGASSR 152
+ +E P S S R
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR 338
>3g14_A Nitroreductase family protein; structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium
novyi}
Length = 193
Score = 28.4 bits (64), Expect = 0.77
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 23 IIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRML 70
+ + K S + K + L ++W + ++L
Sbjct: 143 LRVVALTPLGVPKDSAEDEPHHPKKDMDEYLYIDKWGTSFMESNVKIL 190
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 3.9
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 21 QFII----PFFIIAFC-----YIKVSLKLNDRAKLKPGSKNLRREEWDRERKK 64
+F++ PF IA + D N + WD K
Sbjct: 162 KFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKL 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 5.9
Identities = 6/33 (18%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 109 ITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLP 141
+ H + + + + F+ + L +++F ++LP
Sbjct: 16 LEHVLLVPTASF--FIASQL----QEQFNKILP 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 25.5 bits (55), Expect = 7.2
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 42 DRAKLKPGSKNLRREEWDRERKKR 65
DR +P +++R +W E++KR
Sbjct: 78 DRLTQEP--ESIR--KWREEQRKR 97
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.8 bits (57), Expect = 9.1
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 11 LIYGTIMAFSQFIIPFFIIAFCY 33
++G +F+Q ++ +F A +
Sbjct: 932 HVFGITFSFTQAMM-YFSYAAAF 953
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.448
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,390,028
Number of extensions: 128342
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 31
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)