RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9227
         (156 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLI 71
            +   M    FIIP  +I FCY ++   + +       +   +     ++ +K   RM+I
Sbjct: 202 SFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA------AAQQQESATTQKAEKEVTRMVI 255

Query: 72  AMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDN 131
            MV  F  CW P   +      H+   G  +  +   I    A +S  YNP +Y  +N  
Sbjct: 256 IMVIAFLICWLPYAGVAFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 312

Query: 132 FRKEFKQVLPFFSSAGGASSRSAS 155
           FR      L    +  G    S +
Sbjct: 313 FRNCMVTTLCCGKNPLGDDEASTT 336


>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 150

 Score = 25.2 bits (55), Expect = 3.3
 Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 4/44 (9%)

Query: 55  REEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVA 98
              W  E        L   +   GF      V+  V   +  V 
Sbjct: 75  TGHWSEEEVSFVAGWLKRFIEKGGF----RKVVAHVTGGYRKVV 114


>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1,   
            STAP-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 136

 Score = 24.5 bits (52), Expect = 5.1
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 29  IAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRT 66
             F      L +     L PG      E  +RE+K+R 
Sbjct: 98  RGFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRRI 135


>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 23.6 bits (51), Expect = 7.6
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 16 IMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKP 48
          + A   F +  F + F  +     L  + +++ 
Sbjct: 64 LSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQ 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,218
Number of extensions: 26029
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 9
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.8 bits)