BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9228
(834 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 178/771 (23%), Positives = 293/771 (38%), Gaps = 145/771 (18%)
Query: 74 GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
G + LDL + +Y+G +P+ G + P+ A + G+ GC+ L + ++ +MA
Sbjct: 544 GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 603
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
+ +C C++N PC
Sbjct: 604 VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 629
Query: 188 DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
+G C+D C C G G+ CE++ +L ++ ++ P M + L
Sbjct: 630 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 687
Query: 247 PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSA-TPLYSNDAPAFNPVST-K 304
R R IL + S D D + L + ++ + G L++ N T +
Sbjct: 688 FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVR 746
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT---------LQEIK 354
G + LT ++ + R H + G + L+ LQ +
Sbjct: 747 VVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLT 806
Query: 355 -NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL---TDAHLHF 407
N A + +CK + D + ++ D V T+ SY+AL TL T HL F
Sbjct: 807 FNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQAYTSMHLFF 864
Query: 408 SIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG----LVVLRS 462
FK T +GLI+Y +GD N DF+ L GY + FD+G L+ S
Sbjct: 865 Q----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGNGANLIKGSS 912
Query: 463 KVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGY--NIYH 520
L ++W V I +D + T G + L+L++ LY+GG Y
Sbjct: 913 NKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYIGGVAKETYK 970
Query: 521 VTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYG 580
P L V EGF GC++++D+ G DLI+ A+ ++ S C C N G
Sbjct: 971 SLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQG 1029
Query: 581 ICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTPDSYECLCSL 637
+C G++C C +T +SG C + K GG K P+
Sbjct: 1030 VCL---QQWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPPND------- 1076
Query: 638 GYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQP 697
P A R++IG F T K A+L+ +
Sbjct: 1077 --RPSTRADRLAIG------------------------------FSTVQKEAVLV---RV 1101
Query: 698 SYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLE 757
+G+G +++ + + G + +++G + I+ S +NDG H V TR +L+
Sbjct: 1102 DSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQ 1160
Query: 758 VDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
VDS V + G Q + N++ I +GG G + +SGL N
Sbjct: 1161 VDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 1206
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 118/473 (24%), Positives = 195/473 (41%), Gaps = 70/473 (14%)
Query: 189 GSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAY---PTPKTMRKFKVSLR 244
G C VD C C G GK C Q + FK Y Y P +++L
Sbjct: 202 GVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLS 261
Query: 245 LNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTK 304
R+G++L++G+S D+++LA++ + + GS + N
Sbjct: 262 FKTLQ-RNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGA--FEALVEPVNGKFND 314
Query: 305 EAPYGSKIT-----LTCNND-LEAPVEYTWSKRS--------------NGHVLPFGAFSR 344
A + K+T +T + D + YT + + LP S
Sbjct: 315 NAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSN 374
Query: 345 ENTLTLQEI--KNSDAGMYVCKVSNK-DMTVEIPSILL-----VTDSVPLFTQKPLSYLA 396
L+E+ KN+D + + +++ + D ++I ++ V P+ + P S+++
Sbjct: 375 NFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFIS 434
Query: 397 LPTLTDAHLHFSIELSFKPTDYNGLIMYTGDS--NMKSYKG----KGDFVSFGLEDGYPV 450
LP +A SI F+ T+ NGLI+++ + K K K DF + + DG+
Sbjct: 435 LPKW-NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLY 493
Query: 451 FRFDVG-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG--EPLIVGSTPGEKLQ 503
D+G + L+ KV EW V +D + G +SV P + PGE +
Sbjct: 494 LLLDMGSGTIKIKALQKKVN--DGEWYHVDFQRDGRSGTISVNTLRTPY---TAPGES-E 547
Query: 504 VLNLRTPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA--VDS 556
+L+L LYLGG + T + + G+ GCI + + G D+ A +
Sbjct: 548 ILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQST 607
Query: 557 ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKE 608
A + E++ C PC+N G+C D R Y C C TGY G CE+E
Sbjct: 608 AGVKPSCSRETAKPCLSNPCKNNGMC--RDGWNR-YVCDCSGTGYLGRSCERE 657
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 677 TIAFDFVTDDKNALLLW-NGQPSYKNG------IGREFIAVAVVNGYLEYSYDLGDGVVT 729
+I+FDF T + N L+L+ +G+P ++ I +F A+ +++G+L D+G G +
Sbjct: 445 SISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
IK +K VNDG + V+ R + G++ V+++ +PG ++++ +YLGG P
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPY-TAPGESEILDLDDELYLGGLP 561
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 617 VCKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVH---FLGEGYV--ELKKELIE 670
VC NGG+C V D C CS G+ +C++ G E + F G Y +L + I+
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ----GKEEYIATFKGSEYFCYDLSQNPIQ 252
Query: 671 ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--V 728
+E T++F T +N L+L G+ + +++ +A+ NG + +LG G
Sbjct: 253 SSSDEITLSFK--TLQRNGLMLHTGKSA-------DYVNLALKNGAVSLVINLGSGAFEA 303
Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
++ ND H V VTR + ++ VD ++ G + ++ + Y+GG+P+
Sbjct: 304 LVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPS 363
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+ G + G + + +N +
Sbjct: 364 TADLPGSPVSNNFMGCLKEVVYKNNDV 390
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKY--NKTE 119
VDGI +G +Q + L + Y+G P ++ P + SN F GC+ + Y N
Sbjct: 333 VDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSPVSNNFMGCLKEVVYKNNDVR 391
Query: 120 FELFKMAVE 128
EL ++A +
Sbjct: 392 LELSRLAKQ 400
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 675 EETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNG-YLEYSYDLGDGVVTIKFS 733
E ++F T L+L+ + +F+ + + G L+ S+ + +
Sbjct: 21 ESEMSFQLKTRSARGLVLYFDDEGFC-----DFLELILTRGGRLQLSFSIFCAEPATLLT 75
Query: 734 KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP------ 787
PVNDG H+V + R + +L +D V E + + +++GG P
Sbjct: 76 DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAA 135
Query: 788 NMDL-MTGGRYVHPMSGLMMNIHIQN 812
+ L + R P G + ++ +Q+
Sbjct: 136 ALKLTLASVREREPFKGWIRDVRVQS 161
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 176/780 (22%), Positives = 291/780 (37%), Gaps = 154/780 (19%)
Query: 74 GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
G + LDL + +Y+G +P+ G + P+ A + G+ GC+ L + ++ +MA
Sbjct: 544 GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 603
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
+ +C C++N PC
Sbjct: 604 VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 629
Query: 188 DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
+G C+D C C G G+ CE++ +L ++ ++ P M + L
Sbjct: 630 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 687
Query: 247 PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD-----------TGSATPLYSNDA 295
R R IL + S D D + L + ++ + G T +
Sbjct: 688 FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNL 746
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT----- 349
+ + G + LT ++ + R H + G + L+
Sbjct: 747 NDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSN 806
Query: 350 ----LQEIK-NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL- 400
LQ + N A + +CK + D + ++ D V T+ SY+AL TL
Sbjct: 807 FIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQ 864
Query: 401 --TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG- 456
T HL F FK T +GLI+Y +GD N DF+ L GY + FD+G
Sbjct: 865 AYTSMHLFFQ----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGN 912
Query: 457 ---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYL 513
L+ S L ++W V I +D + T G + L+L++ LY+
Sbjct: 913 GANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYI 970
Query: 514 GGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVC 571
GG Y P L V EGF GC++++D+ G DLI+ A+ ++ S C
Sbjct: 971 GGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTC 1029
Query: 572 APKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTP 628
C N G+C G++C C +T +SG C + K GG K P
Sbjct: 1030 QEDSCSNQGVCL---QQWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPP 1083
Query: 629 DSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKN 688
+ P A R++IG F T K
Sbjct: 1084 ND---------RPSTRADRLAIG------------------------------FSTVQKE 1104
Query: 689 ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
A+L+ + +G+G +++ + + G + +++G + I+ S +NDG H V T
Sbjct: 1105 AVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 1160
Query: 749 RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
R +L+VDS V + G Q + N++ I +GG G + +SGL N
Sbjct: 1161 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 1215
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 116/476 (24%), Positives = 192/476 (40%), Gaps = 76/476 (15%)
Query: 189 GSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAY---PTPKTMRKFKVSLR 244
G C VD C C G GK C Q + FK Y Y P +++L
Sbjct: 202 GVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLS 261
Query: 245 LNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTK 304
R+G++L++G+S D+++LA++ + + GS + N
Sbjct: 262 FKTLQ-RNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGA--FEALVEPVNGKFND 314
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHV-----------------------LPFGA 341
A + K+T N + + + G+ LP
Sbjct: 315 NAWHDVKVT---RNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSP 371
Query: 342 FSRENTLTLQEI--KNSDAGMYVCKVSNK-DMTVEIPSILL-----VTDSVPLFTQKPLS 393
S L+E+ KN+D + + +++ + D ++I ++ V P+ + P S
Sbjct: 372 VSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPES 431
Query: 394 YLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDS--NMKSYKG----KGDFVSFGLEDG 447
+++LP +A SI F+ T+ NGLI+++ + K K K DF + + DG
Sbjct: 432 FISLPKW-NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDG 490
Query: 448 YPVFRFDVG-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG--EPLIVGSTPGE 500
+ D+G + L+ KV EW V +D + G +SV P + PGE
Sbjct: 491 HLYLLLDMGSGTIKIKALQKKVN--DGEWYHVDFQRDGRSGTISVNTLRTPY---TAPGE 545
Query: 501 KLQVLNLRTPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA-- 553
++L+L LYLGG + T + + G+ GCI + + G D+ A
Sbjct: 546 S-EILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEV 604
Query: 554 VDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKE 608
+A + E++ C PC+N G+C D R Y C C TGY G CE+E
Sbjct: 605 QSTAGVKPSCSRETAKPCLSNPCKNNGMC--RDGWNR-YVCDCSGTGYLGRSCERE 657
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 677 TIAFDFVTDDKNALLLW-NGQPSYKNG------IGREFIAVAVVNGYLEYSYDLGDGVVT 729
+I+FDF T + N L+L+ +G+P ++ I +F A+ +++G+L D+G G +
Sbjct: 445 SISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
IK +K VNDG + V+ R + G++ V+++ +PG ++++ +YLGG P
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPY-TAPGESEILDLDDELYLGGLP 561
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 617 VCKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVH---FLGEGYV--ELKKELIE 670
VC NGG+C V D C CS G+ +C++ G E + F G Y +L + I+
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ----GKEEYIATFKGSEYFCYDLSQNPIQ 252
Query: 671 ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--V 728
+E T++F T +N L+L G+ + +++ +A+ NG + +LG G
Sbjct: 253 SSSDEITLSFK--TLQRNGLMLHTGKSA-------DYVNLALKNGAVSLVINLGSGAFEA 303
Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
++ ND H V VTR + ++ VD ++ G + ++ + Y+GG+P+
Sbjct: 304 LVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPS 363
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+ G + G + + +N +
Sbjct: 364 TADLPGSPVSNNFMGCLKEVVYKNNDV 390
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKY--NKTE 119
VDGI +G +Q + L + Y+G P ++ P + SN F GC+ + Y N
Sbjct: 333 VDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSPVSNNFMGCLKEVVYKNNDVR 391
Query: 120 FELFKMAVE 128
EL ++A +
Sbjct: 392 LELSRLAKQ 400
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 675 EETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNG-YLEYSYDLGDGVVTIKFS 733
E ++F T L+L+ + +F+ + + G L+ S+ + +
Sbjct: 21 ESEMSFQLKTRSARGLVLYFDDEGFC-----DFLELILTRGGRLQLSFSIFCAEPATLLT 75
Query: 734 KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
PVNDG H+V + R + +L +D V E + + +++GG P
Sbjct: 76 DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLP 129
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 176/780 (22%), Positives = 291/780 (37%), Gaps = 154/780 (19%)
Query: 74 GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
G + LDL + +Y+G +P+ G + P+ A + G+ GC+ L + ++ +MA
Sbjct: 319 GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 378
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
+ +C C++N PC
Sbjct: 379 VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 404
Query: 188 DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
+G C+D C C G G+ CE++ +L ++ ++ P M + L
Sbjct: 405 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 462
Query: 247 PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD-----------TGSATPLYSNDA 295
R R IL + S D D + L + ++ + G T +
Sbjct: 463 FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNL 521
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT----- 349
+ + G + LT ++ + R H + G + L+
Sbjct: 522 NDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSN 581
Query: 350 ----LQEIK-NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL- 400
LQ + N A + +CK + D + ++ D V T+ SY+AL TL
Sbjct: 582 FIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQ 639
Query: 401 --TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG- 456
T HL F FK T +GLI+Y +GD N DF+ L GY + FD+G
Sbjct: 640 AYTSMHLFFQ----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGN 687
Query: 457 ---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYL 513
L+ S L ++W V I +D + T G + L+L++ LY+
Sbjct: 688 GANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYI 745
Query: 514 GGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVC 571
GG Y P L V EGF GC++++D+ G DLI+ A+ ++ S C
Sbjct: 746 GGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTC 804
Query: 572 APKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTP 628
C N G+C G++C C +T +SG C + K GG K P
Sbjct: 805 QEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPP 858
Query: 629 DSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKN 688
+ P A R++IG F T K
Sbjct: 859 ND---------RPSTRADRLAIG------------------------------FSTVQKE 879
Query: 689 ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
A+L+ + +G+G +++ + + G + +++G + I+ S +NDG H V T
Sbjct: 880 AVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 935
Query: 749 RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
R +L+VDS V + G Q + N++ I +GG G + +SGL N
Sbjct: 936 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 990
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 39/288 (13%)
Query: 350 LQEI--KNSDAGMYVCKVSNK-DMTVEIPSILL-----VTDSVPLFTQKPLSYLALPTLT 401
L+E+ KN+D + + +++ + D ++I ++ V P+ + P S+++LP
Sbjct: 155 LKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW- 213
Query: 402 DAHLHFSIELSFKPTDYNGLIMYTGDS--NMKSYKG----KGDFVSFGLEDGYPVFRFDV 455
+A SI F+ T+ NGLI+++ + K K K DF + + DG+ D+
Sbjct: 214 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 273
Query: 456 G-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG--EPLIVGSTPGEKLQVLNLR 508
G + L+ KV EW V +D + G +SV P + PGE ++L+L
Sbjct: 274 GSGTIKIKALQKKVN--DGEWYHVDFQRDGRSGTISVNTLRTPY---TAPGES-EILDLD 327
Query: 509 TPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA--VDSANIMD 561
LYLGG + T + + G+ GCI + + G D+ A +A +
Sbjct: 328 DELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKP 387
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKE 608
E++ C PC+N G+C D R Y C C TGY G CE+E
Sbjct: 388 SCSRETAKPCLSNPCKNNGMC--RDGWNR-YVCDCSGTGYLGRSCERE 432
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 677 TIAFDFVTDDKNALLLW-NGQPSYKNG------IGREFIAVAVVNGYLEYSYDLGDGVVT 729
+I+FDF T + N L+L+ +G+P ++ I +F A+ +++G+L D+G G +
Sbjct: 220 SISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 279
Query: 730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
IK +K VNDG + V+ R + G++ V+++ +PG ++++ +YLGG P
Sbjct: 280 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPY-TAPGESEILDLDDELYLGGLP 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 656 FLGEGYV--ELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
F G Y +L + I+ +E T++F T +N L+L G+ + +++ +A+
Sbjct: 11 FKGSEYFCYDLSQNPIQSSSDEITLSFK--TLQRNGLMLHTGKSA-------DYVNLALK 61
Query: 714 NGYLEYSYDLGDGV--VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
NG + +LG G ++ ND H V VTR + ++ VD ++ G +
Sbjct: 62 NGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED 121
Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
++ + Y+GG+P+ + G + G + + +N +
Sbjct: 122 YTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDV 165
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 409 IELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLV- 467
I LSFK NGL+++TG S D+V+ L++G ++G + V V
Sbjct: 33 ITLSFKTLQRNGLMLHTGKS--------ADYVNLALKNGAVSLVINLGSGAFEALVEPVN 84
Query: 468 ----PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
+ W V + ++ ++ +SV G G T E +L Y+GG +P
Sbjct: 85 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQ-EDYTMLGSDDFFYVGG------SP 137
Query: 524 SLS----VEVTEGFHGCISTI 540
S + V+ F GC+ +
Sbjct: 138 STADLPGSPVSNNFMGCLKEV 158
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKY--NKTE 119
VDGI +G +Q + L + Y+G P ++ P + SN F GC+ + Y N
Sbjct: 108 VDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSPVSNNFMGCLKEVVYKNNDVR 166
Query: 120 FELFKMAVE 128
EL ++A +
Sbjct: 167 LELSRLAKQ 175
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
ETI + T + LLLW G + G G++FI++ + +G+L + Y LG G + S+
Sbjct: 32 ETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARL-VSED 90
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGG 795
P+NDG H V R + GS++VD + G SPG +N +G++Y+GG P++ +TGG
Sbjct: 91 PINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGG 150
Query: 796 RYVHPMSGLMMNI 808
R+ ++G + N+
Sbjct: 151 RFSSGITGCVKNL 163
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 24/170 (14%)
Query: 408 SIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSKVT 465
+IEL + + +GL+++ G ++ +GK DF+S GL+DG+ VFR+ +G L S+
Sbjct: 33 TIELEVRTSTASGLLLWQGVEVGEAGQGK-DFISLGLQDGHLVFRYQLGSGEARLVSEDP 91
Query: 466 LVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSL 525
+ EW VT +++ + G + V GE L+ G +PG + V N + +Y+GG P +
Sbjct: 92 INDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAV-NAKGSVYIGG------APDV 144
Query: 526 SV----EVTEGFHGCISTIDVLGSE---------LDLINSAVDSANIMDC 562
+ + G GC+ + VL S LDL + A AN C
Sbjct: 145 ATLTGGRFSSGITGCVKNL-VLHSARPGAPPPQPLDLQHRAQAGANTRPC 193
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRL 113
VDG SG S G ++ VYIG PD + FS+G GCV L
Sbjct: 113 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATL-TGGRFSSGITGCVKNL 163
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 222 FKHGSYLAYPT---PKTMRKFKVSLRLNPR-DVRDGIILYSGQS--DDGLG-DFISLAIR 274
F +LA+P +++ + ++ L R G++L+ G + G G DFISL ++
Sbjct: 10 FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69
Query: 275 EKHMEFRFDTGSATPLYSNDAP 296
+ H+ FR+ GS ++ P
Sbjct: 70 DGHLVFRYQLGSGEARLVSEDP 91
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 118/443 (26%), Positives = 182/443 (41%), Gaps = 85/443 (19%)
Query: 379 LVTDSVPLFTQKPLSYLALPTL---TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYK 434
++ D V T+ SY+AL TL T HL F FK T +GLI+Y +GD N
Sbjct: 3 IIADPVTFKTKS--SYVALATLQAYTSMHLFFQ----FKTTSLDGLILYNSGDGN----- 51
Query: 435 GKGDFVSFGLEDGYPVFRFDVG----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE 490
DF+ L GY + FD+G L+ S L ++W V I +D
Sbjct: 52 ---DFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDT 108
Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELD 548
+ T G + L+L++ LY+GG Y P L V EGF GC++++D+ G D
Sbjct: 109 KITTQITAGAR--NLDLKSDLYIGGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPD 165
Query: 549 LINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEK 607
LI+ A+ ++ S C C N G+C G++C C +T +SG C
Sbjct: 166 LISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCND 222
Query: 608 ENNMCMKGDVCKNGGMC--KVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELK 665
+ K GG K P+ P A R++IG
Sbjct: 223 PGTTYI---FSKGGGQITYKWPPND---------RPSTRADRLAIG-------------- 256
Query: 666 KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGD 725
F T K A+L+ + +G+G +++ + + G + +++G
Sbjct: 257 ----------------FSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGT 296
Query: 726 GVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLG 784
+ I+ S +NDG H V TR +L+VDS V + G Q + N++ I +G
Sbjct: 297 DDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIG 356
Query: 785 GTPNMDLMTGGRYVHPMSGLMMN 807
G G + +SGL N
Sbjct: 357 GKEQ-----GQPFQGQLSGLYYN 374
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
HF ELS K GLI+++G +S D+++ + DG+ +D+G VVLRS
Sbjct: 51 HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 103
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
V + + W + + +EG L VG E I GS+P Q L+ L+LGG V
Sbjct: 104 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 162
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
L + GF GCI + V EL L+ A+++ I+ CS
Sbjct: 163 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 202
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 684 TDDKNALLLWNGQPSYKNGIGR-EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIK 742
T+ L+LW+G+ G+ R ++IA+A+V+G+++ YDLG V ++ S P+N
Sbjct: 58 TEATQGLILWSGK-----GLERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHW 111
Query: 743 HSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
+ R+ + GSL+V + G SP ++T G ++LGG + +
Sbjct: 112 THIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 160
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 227 YLAYPTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDT 284
Y A P+ K ++ F++S++ + G+IL+SG+ + D+I+LAI + ++ +D
Sbjct: 38 YPAEPSEKALQSNHFELSIK---TEATQGLILWSGKGLE-RSDYIALAIVDGFVQMMYDL 93
Query: 285 GSATPLYSNDAP 296
GS + + P
Sbjct: 94 GSKPVVLRSTVP 105
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
HF ELS K GLI+++G +S D+++ + DG+ +D+G VVLRS
Sbjct: 42 HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 94
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
V + + W + + +EG L VG E I GS+P Q L+ L+LGG V
Sbjct: 95 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 153
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
L + GF GCI + V EL L+ A+++ I+ CS
Sbjct: 154 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 193
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFV--TDDKNALLLWNGQPSYKNGIGR-EFIAV 710
+ F G Y+E + + + ++ F+ T+ L+LW+G+ G+ R ++IA+
Sbjct: 17 IAFDGRTYMEYHNAVTKSEKALQSNHFELSIKTEATQGLILWSGK-----GLERSDYIAL 71
Query: 711 AVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
A+V+G+++ YDLG V ++ S P+N + R+ + GSL+V + G SP
Sbjct: 72 AIVDGFVQMMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPL 130
Query: 771 SQDVINTRGNIYLGGTPNMDL 791
++T G ++LGG + +
Sbjct: 131 GATQLDTDGALWLGGMERLSV 151
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
HF ELS K GLI+++G +S D+++ + DG+ +D+G VVLRS
Sbjct: 48 HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 100
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
V + + W + + +EG L VG E I GS+P Q L+ L+LGG V
Sbjct: 101 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 159
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
L + GF GCI + V EL L+ A+++ I+ CS
Sbjct: 160 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 199
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 684 TDDKNALLLWNGQPSYKNGIGR-EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIK 742
T+ L+LW+G+ G+ R ++IA+A+V+G+++ YDLG V ++ S P+N
Sbjct: 55 TEATQGLILWSGK-----GLERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHW 108
Query: 743 HSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
+ R+ + GSL+V + G SP ++T G ++LGG + +
Sbjct: 109 THIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 157
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Query: 392 LSYLALPTL----TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDG 447
SYL L L D ++E+ F +GL++Y G + GKGDFVS L +
Sbjct: 17 FSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNG----QKTDGKGDFVSLALHNR 72
Query: 448 YPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVL 505
+ FR+D+G ++RSK + WV V + ++ ++G L VG P ++G +P +L
Sbjct: 73 HLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPH-TML 131
Query: 506 NLRTPLYLGGYNIYHVTPSLS-----VEVTEGFHGCISTIDVLGSEL---DLINSAVDSA 557
NL+ PLY+GG P S V GF G I + + G +L + + AVD A
Sbjct: 132 NLKEPLYVGG------APDFSKLARGAAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVA 185
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 656 FLGEGYVELKKELIEERRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
F G Y+ELK ER E +A + F+ + LLL+NGQ + G +F+++A+
Sbjct: 14 FNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKG---DFVSLALH 70
Query: 714 NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
N +LE+ YDLG G I+ SK+P+ G V + R + G+L+V GESP
Sbjct: 71 NRHLEFRYDLGKGAAIIR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHT 129
Query: 774 VINTRGNIYLGGTPNMDLMTGGRYV 798
++N + +Y+GG P+ + G V
Sbjct: 130 MLNLKEPLYVGGAPDFSKLARGAAV 154
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 253 GIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAP 296
G++LY+GQ DG GDF+SLA+ +H+EFR+D G + + P
Sbjct: 49 GLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEP 92
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 64 GIGP-FSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCV 110
G GP GES L+L E +Y+G PDF ++ A ++GF G +
Sbjct: 115 GDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAI 162
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
HF ELS + GL+++ G + ++ D+++ + DG+ +D+G VVLRS
Sbjct: 38 HF--ELSLRTEATQGLVLWIGKAAERA-----DYMALAIVDGHLQLSYDLGSQPVVLRST 90
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
V + + W+ + ++ +EG L VG E + GS+P Q L+ L+LGG V
Sbjct: 91 VKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQ-LDTDGALWLGGLQKLPVGQ 149
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
+L GF GC+ + V +L L+ AV + C
Sbjct: 150 ALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRPC 188
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 656 FLGEGYVELKKELIEERRNEETIA----------FDFVTDDKNALLLWNGQPSYKNGIGR 705
F G Y+E +IE E A T+ L+LW G+ + +
Sbjct: 7 FDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER----A 62
Query: 706 EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK 765
+++A+A+V+G+L+ SYDLG V ++ + K VN + R ++ GSL+V +
Sbjct: 63 DYMALAIVDGHLQLSYDLGSQPVVLRSTVK-VNTNRWLRIRAHREHREGSLQVGNEAPVT 121
Query: 766 GESPGSQDVINTRGNIYLGG 785
G SP ++T G ++LGG
Sbjct: 122 GSSPLGATQLDTDGALWLGG 141
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 231 PTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGS 286
P K ++ F++SLR + G++L+ G++ + D+++LAI + H++ +D GS
Sbjct: 29 PAEKALQSNHFELSLR---TEATQGLVLWIGKAAE-RADYMALAIVDGHLQLSYDLGS 82
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 673 RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
+N TI + T+ ++ LL + + ++ +F V + NG+ +SYDLG G +
Sbjct: 56 KNRLTIELEVRTEAESGLLFYMARINHA-----DFATVQLRNGFPYFSYDLGSGDTSTMI 110
Query: 733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDL 791
K +NDG H + + R+ + G L VD + SP D+++ G +Y+GG P N
Sbjct: 111 PTK-INDGQWHKIKIVRVKQEGILYVDDA-SSQTISPKKADILDVVGILYVGGLPINYTT 168
Query: 792 MTGGRYVHPMSGLMMNIHIQNKHI 815
G + + G + N+H++ +
Sbjct: 169 RRIGPVTYSLDGCVRNLHMEQAPV 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVT 465
+IEL + +GL+ Y N DF + L +G+P F +D+G T
Sbjct: 58 RLTIELEVRTEAESGLLFYMARIN------HADFATVQLRNGFPYFSYDLG---SGDTST 108
Query: 466 LVPH-----EWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYH 520
++P +W + I++ +EG L V + + +K +L++ LY+GG I +
Sbjct: 109 MIPTKINDGQWHKIKIVRVKQEGILYV--DDASSQTISPKKADILDVVGILYVGGLPINY 166
Query: 521 VTPSLSVEVTEGFHGCISTIDVLGSELDL 549
T + VT GC+ + + + +DL
Sbjct: 167 TTRRIG-PVTYSLDGCVRNLHMEQAPVDL 194
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 673 RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
+N TI + T+ ++ LL + + ++ F V + NG+ +SYDLG G +
Sbjct: 56 KNRLTIELEVRTEAESGLLFYMARINHA-----AFATVQLRNGFPYFSYDLGSGDTSTMI 110
Query: 733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDL 791
K +NDG H + + R+ + G L VD + SP D++ G +Y+GG P N
Sbjct: 111 PTK-INDGQWHKIKIVRVKQEGILYVDDA-SSQTISPKKADILAVVGILYVGGLPINYTT 168
Query: 792 MTGGRYVHPMSGLMMNIHIQNKHI 815
G + + G + N+H++ +
Sbjct: 169 RRIGPVTYSLDGCVRNLHMEQAPV 192
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVT 465
+IEL + +GL+ Y N + F + L +G+P F +D+G T
Sbjct: 58 RLTIELEVRTEAESGLLFYMARINHAA------FATVQLRNGFPYFSYDLG---SGDTST 108
Query: 466 LVPH-----EWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYH 520
++P +W + I++ +EG L V + + +K +L + LY+GG I +
Sbjct: 109 MIPTKINDGQWHKIKIVRVKQEGILYV--DDASSQTISPKKADILAVVGILYVGGLPINY 166
Query: 521 VTPSLSVEVTEGFHGCISTIDVLGSELDL 549
T + VT GC+ + + + +DL
Sbjct: 167 TTRRIG-PVTYSLDGCVRNLHMEQAPVDL 194
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
+ F GEGY + + I N T+ F F T +ALL++ K +F++V +
Sbjct: 206 IQFDGEGYALVSRP-IRWYPNISTVMFKFRTFSSSALLMYLATRDLK-----DFMSVELS 259
Query: 714 NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
+G+++ SYDLG G+ ++ S + NDG + ++RI K ++ + + + E+ +
Sbjct: 260 DGHVKVSYDLGSGMTSV-VSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSS 318
Query: 774 VINTRG-------NIYLGGTPNMDLMTGGRYVHPMSGLMMNIHI 810
N G IY GG P + + V SG + +I I
Sbjct: 319 SGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEI 362
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 408 SIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV--GLVVLRSKVT 465
++ F+ + L+MY ++K DF+S L DG+ +D+ G+ + S
Sbjct: 228 TVMFKFRTFSSSALLMYLATRDLK------DFMSVELSDGHVKVSYDLGSGMTSVVSNQN 281
Query: 466 LVPHEWVVVTIIKDFKEGKLSV-----GGEPLIVGSTPGEKLQV-LNLRTPLYLGGY-NI 518
+W T+ + K+ +S+ E + S+ G + L +Y GG +
Sbjct: 282 HNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTL 341
Query: 519 YHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKP 575
++ P ++V + + GC+ I++ + ++++S CS V PKP
Sbjct: 342 RNLRPEVNV---KKYSGCLKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKP 395
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 706 EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK 765
+F+A+ + G + + +D+G GV +++ ++D + + +R + GS+ V ++ K
Sbjct: 58 DFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPK 117
Query: 766 GES-PGSQDVINTRGNIYLGGTPNMDLMTGG 795
P + ++ G L N L GG
Sbjct: 118 ASMVPSTYHSVSPPGYTILDVDANAMLFVGG 148
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 144 NNCINNGLCQDAAT---RIG-YTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAM 198
N C++N CQ+ AT +IG + CIC PG+ G C V + C C +G C D
Sbjct: 46 NECVSNP-CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 104
Query: 199 KCLCPIGTAGKRCE 212
+C CP G G C+
Sbjct: 105 QCECPTGFTGHLCQ 118
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECL 634
PC++ G C T S + C CL GY+G CE + N C+ + C+N C ++C+
Sbjct: 14 PCEHAGKCINTLGS---FECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQIGEFQCI 69
Query: 635 CSLGYAPPNC 644
C GY +C
Sbjct: 70 CMPGYEGVHC 79
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN C + C C+ GY G HCE + C C + G C +
Sbjct: 48 CVSNPCQNDATCLDQIGE---FQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKINE 103
Query: 631 YECLCSLGYAPPNC 644
++C C G+ C
Sbjct: 104 FQCECPTGFTGHLC 117
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGS 190
VD C S N C + G C + T + C C G++G RC + C C D +
Sbjct: 5 VDEC----SLGANPCEHAGKCIN--TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT 58
Query: 191 CQDVDGAMKCLCPIGTAGKRCE 212
C D G +C+C G G CE
Sbjct: 59 CLDQIGEFQCICMPGYEGVHCE 80
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
+ C SS C++NG C D + C CP GF+G C V
Sbjct: 84 DECASSP---CLHNGRCLDKINE--FQCECPTGFTGHLCQV 119
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 73/373 (19%)
Query: 2 AYIKWSRADGLPLQ---RYAEGN-VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
Y+ W LP+ + + GN L + N D+ YKCE Q S R SD V LNV
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 58 RMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNK 117
I P + + + L+LS +P A +S G + +
Sbjct: 201 YGPDAPTISPLNTSYRSG-ENLNLS---------CHAASNPPAQYSWFVNGT-----FQQ 245
Query: 118 TEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL 177
+ ELF + + V++ + HN+ + GL + T I +V
Sbjct: 246 STQELF---IPNITVNNSGSYTCQAHNS--DTGLNRTTVTTI---------------TVY 285
Query: 178 GEPCYPGACGDGS--CQDVDG-AMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPK 234
EP P + S +D D A+ C +P ++ +YL +
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTC------------------EPEIQNTTYLWW---V 324
Query: 235 TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSND 294
+ VS RL + + L S +D +G + I+ + D LY D
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRND-VGPY-ECGIQNELSVDHSDPVILNVLYGPD 382
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
P +P T P G ++L+C+ P +Y+W N ++E L + I
Sbjct: 383 DPTISPSYTYYRP-GVNLSLSCHAASNPPAQYSWLIDGN-----IQQHTQE--LFISNIT 434
Query: 355 NSDAGMYVCKVSN 367
++G+Y C+ +N
Sbjct: 435 EKNSGLYTCQANN 447
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLT 349
LY DAP +P++T G + L+C+ P +Y+W NG F ++E L
Sbjct: 200 LYGPDAPTISPLNTSYR-SGENLNLSCHAASNPPAQYSW--FVNGT---FQQSTQE--LF 251
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
+ I +++G Y C+ N D + ++ +T
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLTLQEIKNSD 357
NPV ++A + LTC +++ W + V P S +N TLTL + +D
Sbjct: 299 NPVEDEDA-----VALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRND 353
Query: 358 AGMYVCKVSNK 368
G Y C + N+
Sbjct: 354 VGPYECGIQNE 364
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-PD 629
C P P +GIC + C C T + G C+K+ N C C NGG C T PD
Sbjct: 99 CIPHPGCVHGIC------NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152
Query: 630 SYECLCSLGYAPPNC 644
Y+C C GY+ PNC
Sbjct: 153 KYQCSCPEGYSGPNC 167
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K+ +L+ + G+G +F+ + + G + +++G ++IK +
Sbjct: 31 DRLAVGFSTTVKDGILV---RIDSAPGLG-DFLQLHIEQGKIGVVFNIGTVDISIKEERT 86
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
PVNDG H V TR +L+VD+ V + G Q + NT+ I +GG L G
Sbjct: 87 PVNDGKYHVVRFTRNGANATLQVDNWPVNEHYPTGRQLTIFNTQAQIAIGGKDKGRLFQG 146
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 409 IELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVP 468
+ + F T +G+++ + S G GDF+ +E G F++G V + K P
Sbjct: 33 LAVGFSTTVKDGILV-----RIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 87
Query: 469 ---HEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGG 515
++ VV ++ L V P+ G +L + N + + +GG
Sbjct: 88 VNDGKYHVVRFTRNGANATLQVDNWPVNEHYPTGRQLTIFNTQAQIAIGG 137
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM--KGDVCKNGGMCKVTP 628
C +PC + G C S GY C+C GY G +CE N C + D C++ C
Sbjct: 8 CISQPCLHNGSC---QDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ 62
Query: 629 DSYECLCSLGY 639
+SY C C+ GY
Sbjct: 63 ESYTCSCAQGY 73
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP 183
C++NG CQD+ GYTC C PG+ G C + C+P
Sbjct: 13 CLHNGSCQDSI--WGYTCTCSPGYEGSNCELAKNECHP 48
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 524 SLSVEVTEGFH--GCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGI 581
S S E +GF C S ++V E + S+ C P PC N G
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDE----------------EEPTSAGPCTPNPCHNGGT 65
Query: 582 C-----YPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCS 636
C Y DT GY C C G++G HC+ N C + + CKNGG+C +Y C C
Sbjct: 66 CEISEAYRGDTF-IGYVCKCPRGFNGIHCQHNINEC-EVEPCKNGGICTDLVANYSCECP 123
Query: 637 LGYAPPNCAKR 647
+ NC +
Sbjct: 124 GEFMGRNCQYK 134
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 144 NNCINNGLCQDAA-----TRIGYTCICPPGFSGDRCS-----VLGEPCYPGACGDGSCQD 193
N C N G C+ + T IGY C CP GF+G C EPC G G C D
Sbjct: 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNG----GICTD 113
Query: 194 VDGAMKCLCPIGTAGKRCEQK 214
+ C CP G+ C+ K
Sbjct: 114 LVANYSCECPGEFMGRNCQYK 134
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE------------PCYPGACGDGSC 191
N C N G+C ++C CP GF+ CS + E PC P C +G
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGT 65
Query: 192 QDVDGAMK--------CLCPIGTAGKRCEQKIKILQ 219
++ A + C CP G G C+ I +
Sbjct: 66 CEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE 101
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHC-----------EKENNMCMKGDVC 618
+C P PC+N GIC P ++ ++C C G++ +C E + + C
Sbjct: 2 ICDPNPCENGGICLPG-LADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 619 KNGGMCKVT 627
NGG C+++
Sbjct: 61 HNGGTCEIS 69
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 309 GSKITLTCNNDLEAPVEYT--WSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
G+ +T C ++P YT W++ NG LP A LT++ ++ SDAG YVC S
Sbjct: 25 GADVTFICTAKSKSPA-YTLVWTRLHNGK-LPSRAMDFNGILTIRNVQPSDAGTYVCTGS 82
Query: 367 N 367
N
Sbjct: 83 N 83
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 61
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 62 YKCQCEEG 69
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 31 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 86
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 87 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 141
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 142 QPFQGQLSGLYYN 154
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 32 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 87
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 88 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 142
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 143 QPFQGQLSGLYYN 155
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 39 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 94
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 95 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 149
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 150 QPFQGQLSGLYYN 162
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 65 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 120
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 121 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 175
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 176 QPFQGQLSGLYYN 188
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 79 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 134
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 135 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 189
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 190 QPFQGQLSGLYYN 202
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 30 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 85
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 86 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 140
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 141 QPFQGQLSGLYYN 153
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 31 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 86
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
+NDG H V TR +L+VDS V + G Q + N++ I +GG G
Sbjct: 87 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----G 141
Query: 795 GRYVHPMSGLMMN 807
+ +SGL N
Sbjct: 142 QPFQGQLSGLYYN 154
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 59
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 60 YKCQCEEG 67
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 122 LFKMAVERVGVDSCNTCKSSKHNN-----CINNGLCQDAATRIGYTCICPPGFSGDRCS- 175
LF A R+ V C K N C+NNG+C + CICPPGF G C
Sbjct: 176 LFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGE----CICPPGFMGRTCEK 231
Query: 176 -----VLGEPCYPGACGDGSCQD----VDGAMKCLCPIGTAGKRCEQ 213
G C G C+ + C C G G +C +
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNE 278
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK------NGGMCKVTPD 629
C++Y C P Y CSC TG+ G C + + G CK NG MC D
Sbjct: 252 CKSYVFCLPDP-----YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----D 302
Query: 630 SYE-CLCSLGYAPPNCAK 646
++ CLCS G+ C +
Sbjct: 303 RFQGCLCSPGWQGLQCER 320
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 548 DLINSAVDSANIMDCSDLESSPVCAP--KPCQNYGICYPTDTSERGYNCSCLTGYSGDHC 605
+L SA + C + P C C N G+C+ DT E C C G+ G C
Sbjct: 175 NLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCH-EDTGE----CICPPGFMGRTC 229
Query: 606 EKENNMCMKGDVCKNGGM----CK----VTPDSYECLCSLGYAPPNC 644
EK + G CK CK PD Y C C+ G+ C
Sbjct: 230 EKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC 276
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 656 FLGEGYV--ELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
F G Y +L + I+ +E T++F T +N L L G+ + +++ +A+
Sbjct: 10 FKGSEYFCYDLSQNPIQSSSDEITLSFK--TLQRNGLXLHTGKSA-------DYVNLALK 60
Query: 714 NGYLEYSYDLGDGV--VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
NG + +LG G ++ ND H V VTR + ++ VD ++ G +
Sbjct: 61 NGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED 120
Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+ + Y+GG+P+ + G + G + + +N +
Sbjct: 121 YTXLGSDDFFYVGGSPSTADLPGSPVSNNFXGCLKEVVYKNNDV 164
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKY--NKTE 119
VDGI +G +Q + L + Y+G P ++ P + SN F GC+ + Y N
Sbjct: 107 VDGILTTTGYTQEDYTXLGSDDFFYVGGSPSTADL-PGSPVSNNFXGCLKEVVYKNNDVR 165
Query: 120 FELFKMA 126
EL ++A
Sbjct: 166 LELSRLA 172
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 409 IELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLV- 467
I LSFK NGL ++TG S D+V+ L++G ++G + V V
Sbjct: 32 ITLSFKTLQRNGLXLHTGKS--------ADYVNLALKNGAVSLVINLGSGAFEALVEPVN 83
Query: 468 ----PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
+ W V + ++ ++ +SV G G T E L Y+GG +P
Sbjct: 84 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQ-EDYTXLGSDDFFYVGG------SP 136
Query: 524 SLS----VEVTEGFHGCISTI 540
S + V+ F GC+ +
Sbjct: 137 STADLPGSPVSNNFXGCLKEV 157
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 139 KSSKHNNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQ 192
K N C+ NNG C +IGY C+CP GF + RC + E P C C
Sbjct: 36 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCV 94
Query: 193 DVDGAMKCLCPIG 205
+++G KC C G
Sbjct: 95 NLEGGYKCQCEEG 107
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 295 APAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR---ENTL 348
AP F PVS A G T C+ AP++ TW+K N + P G + ENT
Sbjct: 4 APPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA 61
Query: 349 TLQEIK--NSDAGMYVCKVSN 367
TL +K DAG Y C SN
Sbjct: 62 TLTVLKVTKGDAGQYTCYASN 82
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 295 APAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR---ENTL 348
AP F PVS A G T C+ AP++ TW+K N + P G + ENT
Sbjct: 4 APPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA 61
Query: 349 TLQEIK--NSDAGMYVCKVSN 367
TL +K DAG Y C SN
Sbjct: 62 TLTVLKVTKGDAGQYTCYASN 82
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 139 KSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
KS C N G CQ A + C CP GF+G C +
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 290 LYSNDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-- 344
L ++ P F PVS A G T C+ AP++ TW+K N + P G +
Sbjct: 191 LSEHEVPPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTL 248
Query: 345 -ENTLTLQEIK--NSDAGMYVCKVSN 367
ENT TL +K DAG Y C SN
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASN 274
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 294 DAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNG-HVLPFGAFSREN---TL 348
+ P F P+ EA G ITL C D + W K P +N +L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKPLSYLALPTLTDAHLH 406
+ ++ +SD G Y CK N V ++L++ + P F +K L D H
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARK---------LKDVHET 114
Query: 407 FSIELSFK 414
++F+
Sbjct: 115 LGFPVAFE 122
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 144 NNCINNGLCQDAAT---RIG-YTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAM 198
N C++N CQ+ AT +IG + CIC PG+ G C V + C C +G C D
Sbjct: 44 NECVSNP-CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 102
Query: 199 KCLCPIGTAGKRCE 212
+C CP G G C+
Sbjct: 103 QCECPTGFTGHLCQ 116
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC 633
PC++ G C T S + C CL GY+G CE + N C+ + C+N C ++C
Sbjct: 11 NPCEHAGKCINTLGS---FECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQIGEFQC 66
Query: 634 LCSLGYAPPNC 644
+C GY +C
Sbjct: 67 ICMPGYEGVHC 77
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN C + C C+ GY G HCE + C C + G C +
Sbjct: 46 CVSNPCQNDATCLDQIGE---FQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKINE 101
Query: 631 YECLCSLGYA 640
++C C G+
Sbjct: 102 FQCECPTGFT 111
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 161 YTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCE 212
+ C C G++G RC + C C D +C D G +C+C G G CE
Sbjct: 26 FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE 78
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C P PC N G+C S Y C C G+ G +CE + +K CK CK DS
Sbjct: 51 CEPNPCLNGGLCKDDINS---YECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKTGADS 105
Query: 631 YE-CLCSLGY 639
C C+ GY
Sbjct: 106 KVLCSCTTGY 115
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 602 GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
GD CE + C NGG+CK +SYEC C +G+ NC
Sbjct: 48 GDQCEP--------NPCLNGGLCKDDINSYECWCQVGFEGKNC 82
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCP 203
N C+N GLC+D Y C C GF G C + D +C +G K C
Sbjct: 54 NPCLNGGLCKDDIN--SYECWCQVGFEGKNCEL-----------DATCNIKNGRCKQFCK 100
Query: 204 IG---------TAGKRCEQKIKILQPA--FKHGSYLAYPTPKTMRK 238
G T G R K +PA F G +P T+ +
Sbjct: 101 TGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR 146
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC 635
C+N G C PT C C G+ GD C C++GG+C V P+ +CLC
Sbjct: 399 CRN-GYCTPTG------KCCCSPGWEGDFCRTAKCE----PACRHGGVC-VRPN--KCLC 444
Query: 636 SLGYAPPNCAK 646
GY P C +
Sbjct: 445 KKGYLGPQCEQ 455
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 151 LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKR 210
LC++ C C PG+ GD C C P G C + KCLC G G +
Sbjct: 398 LCRNGYCTPTGKCCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQ 452
Query: 211 CEQ 213
CEQ
Sbjct: 453 CEQ 455
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC 635
C+N G C PT C C G+ GD C C++GG+C V P+ +CLC
Sbjct: 399 CRN-GYCTPTG------KCCCSPGWEGDFCRTAKCE----PACRHGGVC-VRPN--KCLC 444
Query: 636 SLGYAPPNCAK 646
GY P C +
Sbjct: 445 KKGYLGPQCEQ 455
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 151 LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKR 210
LC++ C C PG+ GD C C P G C + KCLC G G +
Sbjct: 398 LCRNGYCTPTGKCCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQ 452
Query: 211 CEQ 213
CEQ
Sbjct: 453 CEQ 455
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC 635
C+N G C PT C C G+ GD C C++GG+C V P+ +CLC
Sbjct: 399 CRN-GYCTPTG------KCCCSPGWEGDFCRTAKCE----PACRHGGVC-VRPN--KCLC 444
Query: 636 SLGYAPPNCAK 646
GY P C +
Sbjct: 445 KKGYLGPQCEQ 455
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 151 LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKR 210
LC++ C C PG+ GD C C P G C + KCLC G G +
Sbjct: 398 LCRNGYCTPTGKCCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQ 452
Query: 211 CEQ 213
CEQ
Sbjct: 453 CEQ 455
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C P PC N G+C S Y C C G+ G +CE + +K CK CK DS
Sbjct: 51 CEPNPCLNGGLCKXDINS---YECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKTGADS 105
Query: 631 -YECLCSLGY 639
C C+ GY
Sbjct: 106 KVLCSCTTGY 115
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 602 GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
GD CE + C NGG+CK +SYEC C +G+ NC
Sbjct: 48 GDQCEP--------NPCLNGGLCKXDINSYECWCQVGFEGKNC 82
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC 635
C+N G C PT C C G+ GD C C C++GG+C V P+ +CLC
Sbjct: 420 CRN-GYCTPTG------KCCCSPGWEGDFCRTAK--CEP--ACRHGGVC-VRPN--KCLC 465
Query: 636 SLGYAPPNC 644
GY P C
Sbjct: 466 KKGYLGPQC 474
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 151 LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKR 210
LC++ C C PG+ GD C C P G C + KCLC G G +
Sbjct: 419 LCRNGYCTPTGKCCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQ 473
Query: 211 CE 212
CE
Sbjct: 474 CE 475
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 7 SRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV---------- 56
RA L Q L+IT+ +LQD+G Y+C I S+ G+DY ++ V
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI----SYGGADYKRITVKVNAPYNKIN 121
Query: 57 ERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK-----GCVS 111
+R++ VD P + E + Q + I D + +N + S
Sbjct: 122 QRILVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
Query: 112 RLKYNKTEFELFKMAVERVGVDSCNTCK 139
L+ N T E+F R+ + +T +
Sbjct: 179 TLRINTTTNEIFYCTFRRLDPEENHTAE 206
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 7 SRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV---------- 56
RA L Q L+IT+ +LQD+G Y+C I S+ G+DY ++ V
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI----SYGGADYKRITVKVNAPYNKIN 121
Query: 57 ERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK-----GCVS 111
+R++ VD P + E + Q + I D + +N + S
Sbjct: 122 QRILVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
Query: 112 RLKYNKTEFELFKMAVERVGVDSCNTCK 139
L+ N T E+F R+ + +T +
Sbjct: 179 TLRINTTTNEIFYCTFRRLDPEENHTAE 206
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC 635
C+N G C PT C C G+ GD C C C++GG+C V P+ +CLC
Sbjct: 420 CRN-GYCTPTG------KCCCSPGWEGDFCRTAK--CEP--ACRHGGVC-VRPN--KCLC 465
Query: 636 SLGYAPPNC 644
GY P C
Sbjct: 466 KKGYLGPQC 474
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 151 LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKR 210
LC++ C C PG+ GD C C P G C + KCLC G G +
Sbjct: 419 LCRNGYCTPTGKCCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQ 473
Query: 211 CE 212
CE
Sbjct: 474 CE 475
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T ++A+L+ + +G+G +++ + + G + +++G +TI
Sbjct: 28 DRLAVGFSTHQRSAVLV---RVDSASGLG-DYLQLHIDQGTVGVIFNVGTDDITIDEPNA 83
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGG 785
V+DG H V TR +L+VDS V + G Q + N++ I +GG
Sbjct: 84 IVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGRQLTIFNSQAAIKIGG 134
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 7 SRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV---------- 56
RA L Q L+IT+ +LQD+G Y+C I S+ G+DY ++ V
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI----SYGGADYKRITVKVNAPYNKIN 121
Query: 57 ERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK-----GCVS 111
+R++ VD P + E + Q + I D + +N + S
Sbjct: 122 QRILVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
Query: 112 RLKYNKTEFELFKMAVERVGVDSCNTCK 139
L+ N T E+F R+ + +T +
Sbjct: 179 TLRINTTTNEIFYCTFRRLDPEENHTAE 206
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
C SS C+N G+C + YTC C G+SGDRC
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 139 KSSKHNNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQ 192
K N C+ NNG C +IGY C+CP GF + RC + E P C C
Sbjct: 308 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCV 366
Query: 193 DVDGAMKCLCPIG 205
+++G KC C G
Sbjct: 367 NLEGGYKCQCEEG 379
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
C SS C+N G+C + YTC C G+SGDRC
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN 609
C N G+C ++ + Y C+C+ GYSGD CE +
Sbjct: 14 CLNGGVCMHIESLDS-YTCNCVIGYSGDRCEHAD 46
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALP 398
L+L+ ++ SDAG Y C+V + T + L + VP FT +P LA+P
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVP 111
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRC--SVLGEPCYPGACGDGSCQDVDGAMKCLCP 203
C+N GLC G+ CICPPGF G C + C+ G G+C KC+CP
Sbjct: 187 CMNGGLC----VTPGF-CICPPGFYGVNCDKANCSTTCFNG----GTCFYPG---KCICP 234
Query: 204 IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNP 247
G G++CE K QP G + K + ++ L P
Sbjct: 235 PGLEGEQCEIS-KCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKP 277
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 572 APKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSY 631
P C+N G C +ER C C G+ G HCEK + C NGG+C VTP
Sbjct: 151 CPGGCRNGGFC-----NERRI-CECPDGFHGPHCEKA----LCTPRCMNGGLC-VTPGF- 198
Query: 632 ECLCSLGYAPPNCAK 646
C+C G+ NC K
Sbjct: 199 -CICPPGFYGVNCDK 212
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 139 KSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV--LGEPCYPGACGDGSCQDVDG 196
K++ C N G C CICPPG G++C + +PC G G C G
Sbjct: 212 KANCSTTCFNGGTCFYPGK-----CICPPGLEGEQCEISKCPQPCRNG----GKC---IG 259
Query: 197 AMKCLCPIGTAGKRCEQKI 215
KC C G G C + +
Sbjct: 260 KSKCKCSKGYQGDLCSKPV 278
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 572 APKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSY 631
P+PC+N G C C C GY GD C K +C G C G C +
Sbjct: 247 CPQPCRNGGKCIGKS------KCKCSKGYQGDLCSKP--VCEPG--CGAHGTCH---EPN 293
Query: 632 ECLCSLGYAPPNCAKR 647
+C C G+ +C KR
Sbjct: 294 KCQCQEGWHGRHCNKR 309
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 152 CQDAATRIGYT-CICPPGFSGDRCSVLGEP-CYPGACGDGSCQDVDGAMKCLCPIGTAGK 209
C++ IG + C C G+ GD CS +P C PG G+C + + KC C G G+
Sbjct: 251 CRNGGKCIGKSKCKCSKGYQGDLCS---KPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Query: 210 RCEQK 214
C ++
Sbjct: 305 HCNKR 309
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 4 IKWSRADGLPLQRYAEGN-VLRITNARLQDSGKYKCE---IQGHDSFRG 48
IKW + DG ++ +L I N +D G Y+CE I+G D+++G
Sbjct: 239 IKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQG 287
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 307 PYGS---KITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-----NTLTLQEIKNSDA 358
P GS K+TLTC P Y W + NG L G SR + + +K DA
Sbjct: 17 PEGSAEEKVTLTCRARANPPATYRW--KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDA 74
Query: 359 GMYVCKVSNKDMTV 372
G Y C +N TV
Sbjct: 75 GSYQCVATNARGTV 88
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 138 CKSSKHNNCINNGLC---QDAATRIGYTCICPPGFSGDRCS 175
C + C+N G C +D + Y C C PGF+G RC+
Sbjct: 6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 139 KSSKHNNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQ 192
K N C+ NNG C +IGY C+CP GF + RC + E P C C
Sbjct: 290 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCV 348
Query: 193 DVDGAMKCLCPIG 205
+++G KC C G
Sbjct: 349 NLEGGYKCQCEEG 361
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 296 PAFNPV---STKEAPY----GSKITLTCN-NDLEAPVEYTWSKRSNGHV--------LPF 339
PAF V S +A Y G + T+TC D+ + V TW KR N
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW-KRENSQTKLQEKYNSWHH 264
Query: 340 GAFS--RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
G F+ R+ TLT+ + +D+G+++C +N + + + L V D
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 309
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 30 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 85
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
+NDG H V TR +L+VDS V + G+ D
Sbjct: 86 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNND 123
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 21 NVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
++LRI + +D+G+Y+CEI S R S+ +KL++
Sbjct: 163 SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 312 ITLTC-NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TLTC +ND+ A +++ ++ +S + L + IK DAG Y C++SN
Sbjct: 128 VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 4 IKWSRADGLPL----QRYAEGNVLRITNARLQDSGKYKC 38
I W RADG P+ +R+ +L I N + +D+G Y+C
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 4 IKWSRADGLPL----QRYAEGNVLRITNARLQDSGKYKC 38
I W RADG P+ +R+ +L I N + +D+G Y+C
Sbjct: 236 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 274
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T K A+L+ + +G+G +++ + + G + +++G + I+ S
Sbjct: 37 DRLAIGFSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNA 92
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
+NDG H V TR +L+VDS V + G+ D
Sbjct: 93 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNND 130
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 296 PAFNPV---STKEAPY----GSKITLTCN-NDLEAPVEYTWSKRSNGHV--------LPF 339
PAF V S +A Y G + T+TC D+ + V TW KR N
Sbjct: 181 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW-KRENSQTKLQEKYNSWHH 239
Query: 340 GAFS--RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
G F+ R+ TLT+ + +D+G+++C +N + + + L V D
Sbjct: 240 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 284
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 20 GNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
++LRI + +D+G+Y+CEI S R S+ +KL++
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 312 ITLTC-NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TLTC +ND+ A +++ ++ +S + L + IK DAG Y C++SN
Sbjct: 128 VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 4 IKWSRADGLPLQRYAE----GNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVK 53
I+W + P+ AE G VL+I N +L+D G Y+CE I+G D + YV+
Sbjct: 145 IRWRKVLE-PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 171 GDRCSVL--GEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYL 228
GD+C VL PC CG G+C G+ C C G G+ C++++ L + +G
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 229 AY 230
Y
Sbjct: 66 HY 67
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 88
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 89 YKCQCEEG 96
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 130 VGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF--SGDRCSVLGEPCYPGACG 187
V +D C KH CIN T Y C CP G+ +G+ C E CG
Sbjct: 3 VDMDECKEPDVCKHGQCIN--------TDGSYRCECPFGYILAGNECVDTDECSVGNPCG 54
Query: 188 DGSCQDVDGAMKCLCPIG 205
+G+C++V G +C C G
Sbjct: 55 NGTCKNVIGGFECTCEEG 72
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 579 YGICYPTDTSERGYNCSCLTGY--SGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCS 636
+G C TD S Y C C GY +G+ C + + C G+ C NG CK +EC C
Sbjct: 16 HGQCINTDGS---YRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNVIGGFECTCE 70
Query: 637 LGYAP 641
G+ P
Sbjct: 71 EGFEP 75
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 177 LGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAY 230
L PC CG G+C D G+ C C G G+ C++++ L + +G Y
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHY 60
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 4 IKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQ---GHDSFRGSDYVKLNVERM 59
IKW + DG L Q L+I + +D G Y+CE + G D+ +G V+ E +
Sbjct: 238 IKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWL 297
Query: 60 MFV 62
+
Sbjct: 298 KVI 300
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 311 KITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-----NTLTLQEIKNSDAGMYVCKV 365
++ L C P Y W + NG + SR N + + K DAG+Y C
Sbjct: 23 QVLLACRARASPPATYRW--KMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 366 SNKDMTV 372
SN TV
Sbjct: 81 SNPVGTV 87
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 145 NC-INNGLCQDAATRI--GYTCICPPGF----SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
NC +NNG C I C C G+ G C + E G C G C + +GA
Sbjct: 5 NCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG-CTNSEGA 63
Query: 198 MKCLCPIGTAGKRCEQKIKILQP 220
+C C G + + K L P
Sbjct: 64 FQCWCEAGYELRPDRRSCKALGP 86
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 138 CKSSKHNNCINNGLC---QDAATRIGYTCICPPGFSGDRCS 175
C + C+N G C +D + Y C C PGF+G RC+
Sbjct: 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 48
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 88
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 89 YKCQCEEG 96
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 602 GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
GD CE + C NGG CK +SYEC C G+ NC
Sbjct: 3 GDQCES--------NPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 171 GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
GD+C PC G GSC+D + +C CP G GK CE
Sbjct: 3 GDQCE--SNPCLNG----GSCKDDINSYECWCPFGFEGKNCE 38
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+C S H C+ T YTC C PGFSG +C
Sbjct: 121 ACTNTSCSGHGECVE--------TINNYTCKCDPGFSGLKC 153
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 181 CYPGAC------GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
CY AC G G C + C C G +G +CEQ
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+C S H C+ T YTC C PGFSG +C
Sbjct: 121 ACTNTSCSGHGECVE--------TINNYTCKCDPGFSGLKC 153
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 181 CYPGAC------GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
CY AC G G C + C C G +G +CEQ
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN G C Y C+CL G+ G +CE D C +S
Sbjct: 5 CETSPCQNQGKCK---DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 61
Query: 631 YECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVT 684
C C+ GY + K I + + G+ +E +K + + + A D +T
Sbjct: 62 VVCSCARGYTLADNGK-ACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 114
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 61
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 62 YKCQCEEG 69
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 64
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 65 YKCQCEEG 72
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
V N C S C+++G+C Y C C G+ G+RC
Sbjct: 2 VSHFNDCPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 44
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 287 ATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FS 343
+ P S +FN + + G ++T +C +W + NG ++
Sbjct: 1 SMPAISMPQKSFNATAER----GEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILK 54
Query: 344 RENT-LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
NT LT++ I NSD G YVC+ +NK E + L V
Sbjct: 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 311 KITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-----------NTLTLQEIKNSDAG 359
++TL C+ + E E TW + +G G S + ++L ++++K SD+G
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 360 MYVCKVSNK 368
Y C+ +++
Sbjct: 171 RYDCEAASR 179
>pdb|2OHD|A Chain A, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|B Chain B, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|C Chain C, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|D Chain D, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|E Chain E, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|F Chain F, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
Length = 151
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 659 EGYVELKKELIEERRNEETIAFDFVTDDKNALLL 692
EGY++L+KE IE+ +N+E D +T K A +L
Sbjct: 22 EGYIKLRKETIEKIKNKEVEKGDVITVAKTAGIL 55
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN G C Y C+CL G+ G +CE D C +S
Sbjct: 45 CETSPCQNQGKCKDGLGE---YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 631 YECLCSLGYA 640
C C+ GY
Sbjct: 102 VVCSCARGYT 111
>pdb|3SHS|A Chain A, Three N-Terminal Domains Of The Bacteriophage Rb49 Highly
Immunogenic Outer Capsid Protein (Hoc)
Length = 304
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 309 GSKITLTCNND--LEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
G +T T D L + + YTW+K H + TLT+ + + +AG Y V
Sbjct: 19 GFTLTATVAGDEPLPSNLTYTWTKDDQPHE------NNTATLTVADATSENAGSYKVTVQ 72
Query: 367 NKDMTVEIPSILLVTDSVPLFTQ--KPLSYLALPTLTDAHLHFSIELS 412
+ D + S + + + L +P + + + TD LH +++ S
Sbjct: 73 DTDTMTSVESEVFLMEEAELIVNITEP-QHFYVSSQTDVELHATVKFS 119
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 602 GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
GD CE G C N G CK Y C C+ G+ NC
Sbjct: 47 GDQCE--------GHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 81
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C PC N G C Y C+C G+ G +CE
Sbjct: 50 CEGHPCLNQGHC---KXGIGDYTCTCAEGFEGKNCE 82
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 146 CINNGLCQDAATRIG-YTCICPPGFSGDRC 174
C+N G C+ IG YTC C GF G C
Sbjct: 55 CLNQGHCKXG---IGDYTCTCAEGFEGKNC 81
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT----PDSYECLCSLGYAPPNCAKRV 648
+C C GY D + +C D C+NGG C P ++EC+C P+ A
Sbjct: 62 SCECPEGYILD----DGFICTDIDECENGGFCSGVCHNLPGTFECICG-----PDSALAG 112
Query: 649 SIGSE 653
IG++
Sbjct: 113 QIGTD 117
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 10 DGLPLQRYAEGNVLRITNARLQDSGKYKC 38
DG L+ + E + + ITNA +DSG Y C
Sbjct: 126 DGEALKYWYENHAISITNAAAEDSGTYYC 154
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 23 LRITNARLQDSGKYKCEIQ 41
L I NA+ +DSG+YKC+ Q
Sbjct: 56 LNIVNAKFEDSGEYKCQHQ 74
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT----PDSYECLCSLGYAPPNCAKRV 648
+C C GY D + +C D C+NGG C P ++EC+C P+ A
Sbjct: 62 SCECPEGYILD----DGFICTDIDECENGGFCSGVCHNLPGTFECICG-----PDSALAG 112
Query: 649 SIGSE 653
IG++
Sbjct: 113 QIGTD 117
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
+ +A F T ++A+L+ + +G+G +++ + + G + +++G +TI
Sbjct: 31 DRLAVGFSTHQRSAVLV---RVDSASGLG-DYLQLHIDQGTVGVIFNVGTDDITIDEPNA 86
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
V+DG H V TR +L+VDS V + G+ D
Sbjct: 87 IVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGNFD 124
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 10 DGLPLQRYAEGNVLRITNARLQDSGKYKC 38
DG L+ + E + + ITNA +DSG Y C
Sbjct: 123 DGEALKYWYENHAISITNAAAEDSGTYYC 151
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 23 LRITNARLQDSGKYKCEIQ 41
L I NA+ +DSG+YKC+ Q
Sbjct: 53 LNIVNAKFEDSGEYKCQHQ 71
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 10 DGLPLQRYAEGNVLRITNARLQDSGKYKC 38
DG L+ + E + + ITNA ++DSG Y C
Sbjct: 123 DGEALKYWYENHNISITNATVEDSGTYYC 151
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I NA+ +DSG+YKC+ H S+ V L V
Sbjct: 53 LNIVNAKFEDSGEYKCQ---HQQVNESEPVYLEV 83
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 10 DGLPLQRYAEGNVLRITNARLQDSGKYKC 38
DG L+ + E + + ITNA ++DSG Y C
Sbjct: 123 DGEALKYWYENHNISITNATVEDSGTYYC 151
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I NA+ +DSG+YKC+ H S+ V L V
Sbjct: 53 LNIVNAKFEDSGEYKCQ---HQQVNESEPVYLEV 83
>pdb|1MIE|L Chain L, Crystal Structure Of The Fab Fragment Of Esterolytic
Antibody Ms5-393
pdb|1MJ7|L Chain L, Crystal Structure Of The Complex Of The Fab Fragment Of
Esterolytic Antibody Ms5-393 And A Transition-State
Analog
Length = 219
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F GS T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGSGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 10 DGLPLQRYAEGNVLRITNARLQDSGKYKC 38
DG L+ + E + + ITNA ++DSG Y C
Sbjct: 123 DGEALKYWYENHNISITNATVEDSGTYYC 151
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I NA+ +DSG+YKC+ H S+ V L V
Sbjct: 53 LNIVNAKFEDSGEYKCQ---HQQVNESEPVYLEV 83
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 144 NNCI-NNGLCQDAAT--RIGYTCICPPGF---SGDRCSVLGEPCYPGACGDGSCQDVDGA 197
N C+ NNG C +IGY C+CP GF + RC + E P C C +++G
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVNLEGG 64
Query: 198 MKCLCPIG 205
KC C G
Sbjct: 65 YKCQCEEG 72
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 559 IMDCSDL---ESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
++ C+ L +++ C PCQN G C T + Y C C TG+ G++C
Sbjct: 6 VLLCAALGLSQAANPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 54
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
EG V LRI N R D G Y C + H S++ V+L VE
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVE 120
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
EG V LRI N R D G Y C + H S++ V+L VE
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVE 120
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 289 PLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRE 345
P S +FN + + G ++T +C +W + NG ++
Sbjct: 97 PAISMPQKSFNATAER----GEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGS 150
Query: 346 NT-LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
NT LT++ I NSD G YVC+ +NK E + L V
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 138 CKSSKHNNCINNGLC---QDAATRIGYTCICPPGFSGDRCS 175
C + C+N G C +D + Y C CP F+GDRC
Sbjct: 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ 48
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 27 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 60
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 289 PLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRE 345
P S +FN + + G ++T +C +W + NG ++
Sbjct: 193 PAISMPQKSFNATAER----GEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGS 246
Query: 346 NT-LTLQEIKNSDAGMYVCKVSNK 368
NT LT++ I NSD G YVC+ +NK
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNK 270
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 312 ITLTCNNDLEAP-VEYTWSKRSNGHVLPFGAFSRENTLT-LQEIKNSDAGMYVCKVSN 367
+ L CN D P + WS R +G P G + +NTL + + + +G+Y+CKV+N
Sbjct: 230 VNLKCNADANPPPFKSVWS-RLDGQ-WPDGLLASDNTLHFVHPLTFNYSGVYICKVTN 285
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 341 AFSRENTLTLQEIKNSDAGMYVCKV--SNKDMTVEIPSILLVTDSVP 385
F + +L LQ+++ +D G+Y C++ N+ M ++ P L V P
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
>pdb|1MJ8|L Chain L, High Resolution Crystal Structure Of The Fab Fragment Of
The Esterolytic Antibody Ms6-126
Length = 219
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F G+ T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 9 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 42
>pdb|1MJJ|A Chain A, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJJ|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJU|L Chain L, 1.22 Angstrom Resolution Crystal Structure Of The Fab
Fragment Of Esterolytic Antibody Ms6-12
Length = 219
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F G+ T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|1MH5|A Chain A, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
pdb|1MH5|L Chain L, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
Length = 219
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F G+ T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 10 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 43
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 8 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 8 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 41
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+S + C S C+++G+C Y C C G+ G+RC
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 9 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 42
>pdb|1AE6|L Chain L, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 219
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F G+ T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 6/151 (3%)
Query: 219 QPAFKHGSYLAYPTPKTMRK-FKVSLRLNPRDVRDGIIL-YSGQSDDGLGDFISLAIREK 276
QP H L P K + +K++ + D +I+ S GD++ LA +++
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA-QDR 647
Query: 277 HMEFRFDTGSATPLYSNDAPAFN-PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGH 335
+ R + AP + + G I ++C P + W K +
Sbjct: 648 KTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL 707
Query: 336 VLPFGAFSRE--NTLTLQEIKNSDAGMYVCK 364
V G ++ LT++ ++ D G+Y C+
Sbjct: 708 VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 738
>pdb|3VI3|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 219
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 276 KHMEFRFDTGSATPLYSNDAPA------FNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+H+E+ F G+ T L A A F P S + G+ + NN + W
Sbjct: 95 QHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 210
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQN G C T + Y C C TG+ G++C
Sbjct: 4 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 604 HCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
HC++ + + + C +GG C C C +GY P C
Sbjct: 39 HCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFC 79
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 180 PCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
PC G G C +V+G C CP+G G C+
Sbjct: 52 PCLHG----GRCLEVEGHRLCHCPVGYTGPFCD 80
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 140 SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
SS C+N G+ + YTC C G+SGDRC
Sbjct: 5 SSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 311 KITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-----------NTLTLQEIKNSDAG 359
++TL C+ + E E TW + +G G S + ++L ++++K SD+G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 360 MYVCKVSNK 368
Y C+ +++
Sbjct: 77 RYDCEAASR 85
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 311 KITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-----------NTLTLQEIKNSDAG 359
++TL C+ + E E TW + +G G S + ++L ++++K SD+G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 360 MYVCKVSNK 368
Y C+ +++
Sbjct: 77 RYDCEAASR 85
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 19 EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV-ERMMFVDGIGP 67
+ + L I NA + D+G YKC + D + V + + +++MF + P
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP 109
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
C S C+++G+C Y C C G+ G+RC
Sbjct: 2 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 38
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 19 EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
E LRI N + +D+G+Y+C + S VKL VE
Sbjct: 151 ESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 19 EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV-ERMMFVDGIGP 67
+ + L I NA + D+G YKC + D + V + + +++MF + P
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP 109
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
NP S K G + L C V+Y W K + +P G S L + DA
Sbjct: 24 NPES-KAVLAGQFVKLCCRATGHPFVQYQWFKMNKE--IPNGNTSE---LIFNAVHVKDA 77
Query: 359 GMYVCKVSN 367
G YVC+V+N
Sbjct: 78 GFYVCRVNN 86
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C PCQN G C Y C+CL G+ G +CE
Sbjct: 45 CETSPCQNQGKCKDGLGE---YTCTCLEGFEGKNCE 77
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 4 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 4 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 4 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|1KFA|L Chain L, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
pdb|1KFA|M Chain M, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
Length = 217
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 274 REKHMEFRFDTGSATPLYSNDA----PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTW- 328
+ H+ F F +G+ + DA +F P S + G+ + NN + W
Sbjct: 95 QSTHVPFTFGSGTKLEIKRADAGPTVSSFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 154
Query: 329 ---SKRSNGHVLPF-------GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
S+R NG + + +S +TLTL + + Y C+ ++K T I
Sbjct: 155 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHASYTCEAAHKTSTSPI 210
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 5 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 5 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 5 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 36 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 69
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 36 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 69
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 12 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 45
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 12 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 45
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHC 605
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 16 CCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 49
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 308 YGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSD 357
YG CN DL A Y W + + GA N + +EIK +D
Sbjct: 411 YGGSYLAMCNRDLGADAVYAW---PSAEIAVMGAEGAANVIFRKEIKAAD 457
>pdb|3S88|L Chain L, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
pdb|3VE0|B Chain B, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 212
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGH---VLPFGAFSREN---------------TLTL 350
G ++T+TC + W ++ GH +L + A +R TLTL
Sbjct: 16 GDRVTITCKASQDVTTAVAWYQQKPGHSPKLLIYWASTRHTGVPDRFTGSGSGTAFTLTL 75
Query: 351 QEIKNSDAGMYVCK 364
++ D +Y C+
Sbjct: 76 NSVQAEDLALYYCQ 89
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 16 RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
R +G L I+N D G YKC Q R S Y KL V+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 16 RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
R +G L I+N D G YKC Q R S Y KL V+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 287 ATPLYSNDAPAFNPVSTKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHV-------- 336
A P Y +P E G K+ L C +L +++ W S+ H
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 337 --LPFGAFSRE--NTLTLQEIKNSDAGMYVCKVSNKDMT 371
G+ ++ +TLT+ + SD G+Y C S+ MT
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,452,355
Number of Sequences: 62578
Number of extensions: 1282838
Number of successful extensions: 4647
Number of sequences better than 100.0: 271
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 4021
Number of HSP's gapped (non-prelim): 695
length of query: 834
length of database: 14,973,337
effective HSP length: 107
effective length of query: 727
effective length of database: 8,277,491
effective search space: 6017735957
effective search space used: 6017735957
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)