RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9228
(834 letters)
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 257 bits (656), Expect = 4e-72
Identities = 144/806 (17%), Positives = 271/806 (33%), Gaps = 140/806 (17%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD------FGEIHPSAGFSNGFKGCVSRL 113
+ V+ + + G + LDL + +Y+G +P+ F +A + G+ GC+ L
Sbjct: 531 ISVNTL-RTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDL 589
Query: 114 KYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
+ ++ +MA + +C C++N
Sbjct: 590 FIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN------------------------ 625
Query: 174 CSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTP 233
PC G C+D C C R ++ + + ++ P
Sbjct: 626 ------PCKNN----GMCRDGWNRYVCDCSGTGYLGRSCEREATVLS-YDGSMFMKIQLP 674
Query: 234 KTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLY 291
M VSLR + GI++ + D D + L + ++ + G
Sbjct: 675 VVMHTEAEDVSLRFRSQR-AYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETL 731
Query: 292 SNDAPA--FNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNG------------HVL 337
+ + G + LT ++ + + +
Sbjct: 732 FAGYNLNDNEWHTVRVVRRGKSLKLTVDD--QQAMTGQMAGDHTRLEFHNIETGIITERR 789
Query: 338 PFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKPLSYL 395
+ LQ + + + E+ + + + P+ + SY+
Sbjct: 790 YLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYV 849
Query: 396 ALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV 455
AL TL A+ + FK T +GLI+Y DF+ L GY + FD+
Sbjct: 850 ALATL-QAYTSMHLFFQFKTTSLDGLILYNSG-------DGNDFIVVELVKGYLHYVFDL 901
Query: 456 G----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPL 511
G L+ S L ++W V I +D + T G + L+L++ L
Sbjct: 902 GNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARN--LDLKSDL 959
Query: 512 YLGG-YNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPV 570
Y+GG + + V EGF GC++++D+ G DLI+ A+ ++ S
Sbjct: 960 YIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTT 1019
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
C C N G+C G++C C +T +SG C +
Sbjct: 1020 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLCNDPGTTYI---------------- 1060
Query: 630 SYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEER-RNEETIAFDFVTDDKN 688
G G + K + + +A F T K
Sbjct: 1061 -------------------------FSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE 1095
Query: 689 ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
A+L+ S +++ + + G + +++G + I+ S +NDG H V T
Sbjct: 1096 AVLVRVDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 1151
Query: 749 RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
R +L+VDS V + G Q + N++ I +GG P G +
Sbjct: 1152 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ---------PFQGQLSG 1202
Query: 808 IHIQNKHISNIGSSASSGLHVMPWIR 833
++ + N+ + + + ++ +R
Sbjct: 1203 LYYNGLKVLNMAAENDANIAIVGNVR 1228
Score = 235 bits (601), Expect = 6e-65
Identities = 140/813 (17%), Positives = 262/813 (32%), Gaps = 143/813 (17%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIH------PSAGFSNGFKGCVSRL 113
+F+D + E + + + + +++G +P S FKG + +
Sbjct: 98 LFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDV 157
Query: 114 KYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
+ S +++G + PP G
Sbjct: 158 RVQ------------------------SSLALPVDSGEVK--------LDDEPPNSGGGS 185
Query: 174 CSVLGEPCYPGACG-DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYP 231
GE G C G C VD C C G GK C Q + FK Y Y
Sbjct: 186 PCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYD 245
Query: 232 TPK-TMRKFKVSLRLNPR-DVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD--TGSA 287
+ ++ + L+ + R+G++L++G+S D+++LA++ + + +G+
Sbjct: 246 LSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGAF 301
Query: 288 TPLYSNDAPAFNPVSTKEAP---YGSKITLTCNNDLEAPVEYTWSKRSNGHVLP--FGAF 342
L FN + + ++T++ + L G G
Sbjct: 302 EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGS 361
Query: 343 SRENTLTLQEIKNS-------------------DAGMYVCKVSNKDMTVEIPSILLVTDS 383
L + N+ K V V
Sbjct: 362 PSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATL 421
Query: 384 VPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSN------MKSYKGKG 437
P+ + P S+++LP SI F+ T+ NGLI+++ K
Sbjct: 422 DPITFETPESFISLPKWNAKK-TGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKV 480
Query: 438 DFVSFGLEDGYPVFRFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIV 494
DF + + DG+ D+G + + + + EW V +D + G +SV
Sbjct: 481 DFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLR-TP 539
Query: 495 GSTPGEKLQVLNLRTPLYLGGYNIYHVTPSL-----SVEVTEGFHGCISTIDVLGSELDL 549
+ PGE ++L+L LYLGG + + G+ GCI + + G D+
Sbjct: 540 YTAPGES-EILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDI 598
Query: 550 INSAV--DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
A +A + E++ C PC+N G+C G++
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRD--------------GWNR----- 639
Query: 608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKE 667
Y C CS +R + + + + G +++++
Sbjct: 640 -----------------------YVCDCSGTGYLGRSCEREA--TVLSYDGSMFMKIQL- 673
Query: 668 LIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV 727
+ E ++ F + +L+ + + + + G ++ + +LG G
Sbjct: 674 PVVMHTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRLELDAGRVKLTVNLGKGP 728
Query: 728 VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
T+ F+ +ND H+V V R K L VD G+ G + T
Sbjct: 729 ETL-FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE 787
Query: 788 NMDLMTGGR-YVHPMSGLMMNIHIQNKHISNIG 819
L + ++ + L N N
Sbjct: 788 RRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 820
Score = 220 bits (560), Expect = 1e-59
Identities = 80/441 (18%), Positives = 143/441 (32%), Gaps = 65/441 (14%)
Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGL-E 445
F + P +A + K GL++Y D +G DF+ L
Sbjct: 3 FPGAEGQWTRFPKW-NACCESEMSFQLKTRSARGLVLYFDD------EGFCDFLELILTR 55
Query: 446 DGYPVFRFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKL 502
G F + L + + W V I + F+ L + ++
Sbjct: 56 GGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR 115
Query: 503 QVLNLRTPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSA 557
+ + + L++GG SV E F G I + V S ++S
Sbjct: 116 D-MTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSG---- 170
Query: 558 NIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
G + +G V
Sbjct: 171 --------------------------------EVKLDDEPPNSGGGSPCEAGEEG-EGGV 197
Query: 618 CKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEE 676
C NGG+C V D C CS G+ +C++ F G Y + + +
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYI-ATFKGSEYFCYDLSQNPIQSSSD 256
Query: 677 TIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--VTIKFSK 734
I F T +N L+L G+ +++ +A+ NG + +LG G ++
Sbjct: 257 EITLSFKTLQRNGLMLHTGK-------SADYVNLALKNGAVSLVINLGSGAFEALVEPVN 309
Query: 735 KPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTG 794
ND H V VTR + ++ VD ++ G + ++ + Y+GG+P+ + G
Sbjct: 310 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPG 369
Query: 795 GRYVHPMSGLMMNIHIQNKHI 815
+ G + + +N +
Sbjct: 370 SPVSNNFMGCLKEVVYKNNDV 390
Score = 98.0 bits (243), Expect = 5e-21
Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 20/190 (10%)
Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
++Y P + + + F +++ S+ G GD++ + G
Sbjct: 1068 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 1122
Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
+F+VG + + S + ++ VV + L V P+I G +L + N +
Sbjct: 1123 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 1182
Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESS 568
+ +GG E + F G +S + G ++ L +A + ANI ++
Sbjct: 1183 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLV 1230
Query: 569 PVCAPKPCQN 578
+
Sbjct: 1231 GEVPSASTSH 1240
Score = 97.6 bits (242), Expect = 8e-21
Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 18/177 (10%)
Query: 654 VHFLGEG--YVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVA 711
+ F G + K E ++F T L+L+ + +F+ +
Sbjct: 1 LEFPGAEGQWTRFPKW---NACCESEMSFQLKTRSARGLVLYFD-----DEGFCDFLELI 52
Query: 712 VV-NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
+ G L+ S+ + + PVNDG H+V + R + +L +D V E
Sbjct: 53 LTRGGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKS 112
Query: 771 SQDVINTRGNIYLGGTPN-------MDLMTGGRYVHPMSGLMMNIHIQNKHISNIGS 820
+ + +++GG P + R P G + ++ +Q+ + S
Sbjct: 113 KRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDS 169
Score = 85.7 bits (211), Expect = 4e-17
Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 44/254 (17%)
Query: 52 VKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD--FGEIHPSAGFSNGFKGC 109
+ + + V + + + LDL +YIG V + + GF+GC
Sbjct: 926 ISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGC 985
Query: 110 VSRLKYNKTEFELFKMAVERVGVDS---CNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
++ + N +L A+ G + + ++C N G+C G++C C
Sbjct: 986 LASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWD--GFSCDCS 1043
Query: 167 -PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
FSG C+ G G
Sbjct: 1044 MTSFSGPLCNDPGTTYIFSKGGGQITYKWPP----------------------------- 1074
Query: 226 SYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG 285
+ R ++++ + ++ +++ S GLGD++ L I + + +F+ G
Sbjct: 1075 -----NDRPSTRADRLAIGFSTVQ-KEAVLVRV-DSSSGLGDYLELHIHQGKIGVKFNVG 1127
Query: 286 SATPLYSNDAPAFN 299
+ N
Sbjct: 1128 TDDIAIEESNAIIN 1141
Score = 49.1 bits (116), Expect = 6e-06
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 225 GSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIRE-KHMEFRFD 283
G + +P + ++S +L R G++LY D+G DF+ L + ++ F
Sbjct: 8 GQWTRFPKWNACCESEMSFQLKTR-SARGLVLYFD--DEGFCDFLELILTRGGRLQLSFS 64
Query: 284 TGSATPL 290
A P
Sbjct: 65 IFCAEPA 71
Score = 41.8 bits (97), Expect = 0.001
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 60 MFVDGIGPFSGESQGA-FQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKT 118
+ VD G + + IG F+G +S L YN
Sbjct: 1159 LQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYN-- 1206
Query: 119 EFELFKMAVER---------VGVDSCNTCKSSKHNNC 146
++ MA E V + S+ H++
Sbjct: 1207 GLKVLNMAAENDANIAIVGNVRLVGEVPSASTSHHHH 1243
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 220 bits (562), Expect = 2e-64
Identities = 98/453 (21%), Positives = 170/453 (37%), Gaps = 75/453 (16%)
Query: 385 PLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGL 444
P+ + SY+AL TL A+ + FK T +GLI+Y DF+ L
Sbjct: 7 PVTFKTKSSYVALATL-QAYTSMHLFFQFKTTSLDGLILYNSG-------DGNDFIVVEL 58
Query: 445 EDGYPVFRFDVG----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
GY + FD+G L+ S L ++W V I +D + T G
Sbjct: 59 VKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA 118
Query: 501 KLQVLNLRTPLYLGGY-NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI 559
+ L+L++ LY+GG + + V EGF GC++++D+ G DLI+ A+
Sbjct: 119 R--NLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQ 176
Query: 560 MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVC 618
++ S C C N G+C G++C C +T +SG C +
Sbjct: 177 IERGCEGPSTTCQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLCNDPGTTYI----- 228
Query: 619 KNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEER-RNEET 677
G G + K + +
Sbjct: 229 ------------------------------------FSKGGGQITYKWPPNDRPSTRADR 252
Query: 678 IAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPV 737
+A F T K A+L+ S +++ + + G + +++G + I+ S +
Sbjct: 253 LAIGFSTVQKEAVLVRVDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAII 308
Query: 738 NDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD-VINTRGNIYLGGTPNMDLMTGGR 796
NDG H V TR +L+VDS V + G Q + N++ I +GG
Sbjct: 309 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ------ 362
Query: 797 YVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
P G + ++ + N+ + + + ++
Sbjct: 363 ---PFQGQLSGLYYNGLKVLNMAAENDANIAIV 392
Score = 97.4 bits (242), Expect = 1e-21
Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 20/185 (10%)
Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
++Y P + + + F +++ S+ G GD++ + G
Sbjct: 236 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 290
Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
+F+VG + + S + ++ VV + L V P+I G +L + N +
Sbjct: 291 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 350
Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESS 568
+ +GG E + F G +S + G ++ L +A + ANI ++
Sbjct: 351 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLV 398
Query: 569 PVCAP 573
+
Sbjct: 399 GEVSR 403
Score = 95.8 bits (238), Expect = 4e-21
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 658 GEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYL 717
YV L + + F F T + L+L+N G G +FI V +V GYL
Sbjct: 13 KSSYVALATL---QAYTSMHLFFQFKTTSLDGLILYNS------GDGNDFIVVELVKGYL 63
Query: 718 EYSYDLGDGVVTIK-FSKKPVNDGIKHSVNVTRINK-FGSLEVDSVIVGKGESPGSQDVI 775
Y +DLG+G IK S KP+ND H+V ++R ++++D+ I + +
Sbjct: 64 HYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKIT--TQITAGARNL 121
Query: 776 NTRGNIYLGGTPNMDLMTGGRYVHPMSGL---MMNIHIQNKHISNIGSSASSGLHVMP 830
+ + ++Y+GG + + VH G + ++ + + I + +
Sbjct: 122 DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIER 179
Score = 91.2 bits (226), Expect = 1e-19
Identities = 57/317 (17%), Positives = 105/317 (33%), Gaps = 68/317 (21%)
Query: 7 SRADGLPLQRYAEGN-----VLRITNARLQ---DSGKYKCEIQGHDSFRGSD------YV 52
+ DGL L Y G+ V+ + L D G I+G + +D +
Sbjct: 37 TSLDGLIL--YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMI 94
Query: 53 KLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD--FGEIHPSAGFSNGFKGCV 110
+ + V + + + LDL +YIG V + + GF+GC+
Sbjct: 95 SRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCL 154
Query: 111 SRLKYNKTEFELFKMA------VERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCI 164
+ + N +L A +ER TC+ ++C N G+C G++C
Sbjct: 155 ASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQE---DSCSNQGVCLQQWD--GFSCD 209
Query: 165 CP-PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFK 223
C FSG C+ G
Sbjct: 210 CSMTSFSGPLCNDPGTTYIFSKG-----------------------------------GG 234
Query: 224 HGSYLAYPTPKTM-RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRF 282
+Y P + R ++++ + ++ +++ S GLGD++ L I + + +F
Sbjct: 235 QITYKWPPNDRPSTRADRLAIGFSTVQ-KEAVLVRV-DSSSGLGDYLELHIHQGKIGVKF 292
Query: 283 DTGSATPLYSNDAPAFN 299
+ G+ N
Sbjct: 293 NVGTDDIAIEESNAIIN 309
Score = 52.3 bits (125), Expect = 4e-07
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 226 SYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG 285
SY+A T + + + DG+ILY+ DFI + + + ++ + FD G
Sbjct: 15 SYVALATLQAYTSMHLFFQFKTT-SLDGLILYNS---GDGNDFIVVELVKGYLHYVFDLG 70
Query: 286 S 286
+
Sbjct: 71 N 71
Score = 41.5 bits (97), Expect = 0.001
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 13/80 (16%)
Query: 60 MFVDGIGPFSGES-QGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKT 118
+ VD + + IG F+G +S L YN
Sbjct: 327 LQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYN-- 374
Query: 119 EFELFKMAVERVGVDSCNTC 138
++ MA E +
Sbjct: 375 GLKVLNMAAENDANIAIVGN 394
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 140 bits (353), Expect = 4e-38
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 655 HFLGEGYVELKKELIEE--RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAV 712
+F +G++ + ETI + T + LLLW G + G G++FI++ +
Sbjct: 9 YFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGL 68
Query: 713 VNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ 772
+G+L + Y LG G + S+ P+NDG H V R + GS++VD + G SPG
Sbjct: 69 QDGHLVFRYQLGSGEARLV-SEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPN 127
Query: 773 DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+N +G++Y+GG P++ +TGGR+ ++G + N+ + +
Sbjct: 128 VAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARP 170
Score = 119 bits (299), Expect = 6e-31
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 18/185 (9%)
Query: 393 SYLALPTLTDAH----LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGY 448
+LA P + + +IEL + + +GL+++ G ++ DF+S GL+DG+
Sbjct: 14 GFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEA-GQGKDFISLGLQDGH 72
Query: 449 PVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLN 506
VFR+ +G L S+ + EW VT +++ + G + V GE L+ G +PG +N
Sbjct: 73 LVFRYQLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPN-VAVN 131
Query: 507 LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS--------ELDLINSAVDSAN 558
+ +Y+GG V + G GC+ + + + LDL + A AN
Sbjct: 132 AKGSVYIGGAP--DVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 189
Query: 559 IMDCS 563
C
Sbjct: 190 TRPCP 194
Score = 57.2 bits (138), Expect = 2e-09
Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
+ VDG SG S G ++ VYIG PD FS+G GCV L +
Sbjct: 111 IQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVLHSAR 169
Query: 120 FE--------LFKMAVERVGVDSC 135
L A C
Sbjct: 170 PGAPPPQPLDLQHRAQAGANTRPC 193
Score = 49.9 bits (119), Expect = 6e-07
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 222 FKHGSYLAYPTPKTMR-----KFKVSLRLNPRDVRDGIILYSGQ---SDDGLGDFISLAI 273
F +LA+P R + L + G++L+ G DFISL +
Sbjct: 10 FHDDGFLAFPGHVFSRSLPEVPETIELEVRTS-TASGLLLWQGVEVGEAGQGKDFISLGL 68
Query: 274 REKHMEFRFDTGSAT 288
++ H+ FR+ GS
Sbjct: 69 QDGHLVFRYQLGSGE 83
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 138 bits (348), Expect = 3e-37
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
+ L Y A P+ A ELS K GLI+++G + D+++ + D
Sbjct: 31 KSPDALDYPAEPSE-KALQSNHFELSIKTEATQGLILWSGKGL-----ERSDYIALAIVD 84
Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
G+ +D+G VVLRS V + + W + + +EG L VG E I GS+P
Sbjct: 85 GFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGA-TQ 143
Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
L+ L+LGG V L + GF GCI + V EL L+ A+++ I+ CS
Sbjct: 144 LDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 202
Score = 122 bits (308), Expect = 6e-32
Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 643 NCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNG 702
Y E + T+ L+LW+G+
Sbjct: 20 RTYMEYHNAVTKSPDALDYPAEPSE---KALQSNHFELSIKTEATQGLILWSGK----GL 72
Query: 703 IGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVI 762
++IA+A+V+G+++ YDLG V ++ S P+N + R+ + GSL+V +
Sbjct: 73 ERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEA 131
Query: 763 VGKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGS 820
G SP ++T G ++LGG + + Y G + ++ + + + +
Sbjct: 132 PITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVED 191
Query: 821 SASSG 825
+ ++
Sbjct: 192 ALNNP 196
Score = 63.7 bits (155), Expect = 1e-11
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHP-SAGFSNGFKGCVSRLKYNKT 118
+ V P +G S LD +++G + H +S GF GC+ + ++
Sbjct: 125 LQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQ 184
Query: 119 EFELFKMAVERVGVDSCNT 137
E L + A+ + C+
Sbjct: 185 ELHLVEDALNNPTILHCSA 203
Score = 58.3 bits (141), Expect = 9e-10
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 208 GKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGD 267
G+ + + + Y A P+ K ++ L + G+IL+SG+ + D
Sbjct: 19 GRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTE-ATQGLILWSGKGLER-SD 76
Query: 268 FISLAIREKHMEFRFDTGSAT 288
+I+LAI + ++ +D GS
Sbjct: 77 YIALAIVDGFVQMMYDLGSKP 97
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 134 bits (338), Expect = 4e-36
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 381 TDSVPLFTQKPLSYLALPTLT----DAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
+ F SYL L L D ++E+ F +GL++Y G GK
Sbjct: 8 RPFLADFN--GFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKT----DGK 61
Query: 437 GDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIV 494
GDFVS L + + FR+D+G ++RSK + WV V + ++ ++G L VG P ++
Sbjct: 62 GDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVL 121
Query: 495 GSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV 554
G +P +LNL+ PLY+GG + V GF G I + + G +L +
Sbjct: 122 GESPV-PHTMLNLKEPLYVGGAPDFSKLAR-GAAVASGFDGAIQLVSLRGHQLLTQEHVL 179
Query: 555 DSANIMDCS 563
+ ++ +
Sbjct: 180 RAVDVAPFA 188
Score = 123 bits (311), Expect = 1e-32
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 643 NCAKRVSIGSEVHFLGEGYVELK--KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYK 700
N R + F G Y+ELK + + + F+ + LLL+NGQ +
Sbjct: 4 NAGSRPFL---ADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDG 60
Query: 701 NGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDS 760
G +F+++A+ N +LE+ YDLG G I+ SK+P+ G V + R + G+L+V
Sbjct: 61 KG---DFVSLALHNRHLEFRYDLGKGAAIIR-SKEPIALGTWVRVFLERNGRKGALQVGD 116
Query: 761 VIVGKGESPGSQDVINTRGNIYLGGTPNMD-LMTGGRYVHPMSGLMMNIHIQNKHISNIG 819
GESP ++N + +Y+GG P+ L G G + + ++ +
Sbjct: 117 GPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQL-LTQ 175
Query: 820 SSASSGLHVMPW 831
+ V P+
Sbjct: 176 EHVLRAVDVAPF 187
Score = 71.8 bits (176), Expect = 2e-14
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
+ V GES L+L E +Y+G PDF ++ A ++GF G + + +
Sbjct: 112 LQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQ 171
Query: 120 FELFKMAVERVGVDSC 135
+ + V V
Sbjct: 172 LLTQEHVLRAVDVAPF 187
Score = 59.5 bits (144), Expect = 3e-10
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 220 PAFKHGSYLAYPTPKTMR-----KFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIR 274
F SYL T K + + R G++LY+GQ DG GDF+SLA+
Sbjct: 12 ADFNGFSYLELKGLHTFERDLGEKMALEMVFLARG-PSGLLLYNGQKTDGKGDFVSLALH 70
Query: 275 EKHMEFRFDTGS 286
+H+EFR+D G
Sbjct: 71 NRHLEFRYDLGK 82
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 130 bits (328), Expect = 8e-35
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
+P A ELS + GL+++ G + + D+++ + DG+
Sbjct: 24 LTNEIPAE-KALQSNHFELSLRTEATQGLVLWIGKAA-----ERADYMALAIVDGHLQLS 77
Query: 453 FDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTP 510
+D+G VVLRS V + + W+ + ++ +EG L VG E + GS+P L+
Sbjct: 78 YDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGA-TQLDTDGA 136
Query: 511 LYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
L+LGG V +L GF GC+ + V +L L+ AV + C
Sbjct: 137 LWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRPC 188
Score = 126 bits (317), Expect = 2e-33
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 654 VHFLGEGYVELKKELIEER----------RNEETIAFDFVTDDKNALLLWNGQPSYKNGI 703
+ F G Y+E +IE T+ L+LW G+
Sbjct: 5 LAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGK----AAE 60
Query: 704 GREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIV 763
+++A+A+V+G+L+ SYDLG V ++ S VN + R ++ GSL+V +
Sbjct: 61 RADYMALAIVDGHLQLSYDLGSQPVVLR-STVKVNTNRWLRIRAHREHREGSLQVGNEAP 119
Query: 764 GKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGSS 821
G SP ++T G ++LGG + + Y G + ++ + ++ + ++
Sbjct: 120 VTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQL-HLLED 178
Query: 822 ASSGLHVMP 830
A + + P
Sbjct: 179 AVTKPELRP 187
Score = 63.7 bits (155), Expect = 1e-11
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHP-SAGFSNGFKGCVSRLKYNKT 118
+ V P +G S LD +++G + + GF GC+ +
Sbjct: 112 LQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHR 171
Query: 119 EFELFKMAVERVGVDSCNT 137
+ L + AV + + C T
Sbjct: 172 QLHLLEDAVTKPELRPCPT 190
Score = 49.1 bits (117), Expect = 1e-06
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 220 PAFKHGSYLAY-------------PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLG 266
AF +Y+ Y P K ++ L L G++L+ G++ +
Sbjct: 5 LAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTE-ATQGLVLWIGKAAER-A 62
Query: 267 DFISLAIREKHMEFRFDTGS 286
D+++LAI + H++ +D GS
Sbjct: 63 DYMALAIVDGHLQLSYDLGS 82
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 125 bits (315), Expect = 4e-33
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
F G Y + + + I F T +N L+L G+ + +++ +A+
Sbjct: 8 ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSA-------DYVNLALK 60
Query: 714 NGYLEYSYDLGDGV--VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
NG + +LG G ++ ND H V VTR + ++ VD ++ G +
Sbjct: 61 NGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED 120
Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
++ + Y+GG+P+ + G + G + + +N +
Sbjct: 121 YTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDV 164
Score = 112 bits (282), Expect = 1e-28
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 393 SYLALPTLTDAH--LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPV 450
Y + I LSFK NGL+++TG D+V+ L++G
Sbjct: 14 EYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG--------KSADYVNLALKNGAVS 65
Query: 451 FRFDVG-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVL 505
++G +V + W V + ++ ++ +SV G G T + +L
Sbjct: 66 LVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED-YTML 124
Query: 506 NLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV 554
Y+GG P V+ F GC+ + +++ L S +
Sbjct: 125 GSDDFFYVGGSPSTADLPGSP--VSNNFMGCLKEVVYKNNDVRLELSRL 171
Score = 59.1 bits (143), Expect = 3e-10
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
+ VDGI +G +Q + L + Y+G P + P + SN F GC+ + Y +
Sbjct: 105 ISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTAD-LPGSPVSNNFMGCLKEVVYKNND 163
Query: 120 FELFKMAVERVGVDSCN 136
L + + G
Sbjct: 164 VRLELSRLAKQGDPKMK 180
Score = 51.0 bits (122), Expect = 2e-07
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 220 PAFKHGSYLAYPTPKTM---RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREK 276
FK Y Y + +++L R+G++L++G+S D+++LA++
Sbjct: 8 ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTL-QRNGLMLHTGKS----ADYVNLALKNG 62
Query: 277 HMEFRFDTGSATP 289
+ + GS
Sbjct: 63 AVSLVINLGSGAF 75
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 127 bits (319), Expect = 1e-30
Identities = 61/419 (14%), Positives = 129/419 (30%), Gaps = 66/419 (15%)
Query: 222 FKHGSYLAY-PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEF 280
Y P K + + + D ++ Y G + DF+++ +R+ + F
Sbjct: 15 SGGDCVRTYRPEIKKGSYNNIVVHVKTAV-ADNLLFYLGSAKFI--DFLAIEMRKGKVSF 71
Query: 281 RFDTGSATPLYSNDAPAFNP----------------VSTKEAPYGSKITLTCNNDLEAPV 324
+D GS + +S + + +P
Sbjct: 72 LWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPP 131
Query: 325 EYTWSKRSNGHVLPFGAFS------------------RENTLTLQEIKNSDAGMYVCKVS 366
YT +L G + E + I +
Sbjct: 132 GYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCK 191
Query: 367 NKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAH-LHFSIELSFKPTDYNGLIMYT 425
++ + V DS Y + + ++ F+ + L+MY
Sbjct: 192 GCTVSPQ------VEDSEGTIQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYL 245
Query: 426 GDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEG 483
+ DF+S L DG+ +D+G + + S +W T+ + K+
Sbjct: 246 AT------RDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQA 299
Query: 484 KLSV-----GGEPLIVGSTPGEKLQV-LNLRTPLYLGGY-NIYHVTPSLSVEVTEGFHGC 536
+S+ E + S+ G + L +Y GG + ++ P ++ + + GC
Sbjct: 300 NISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVN---VKKYSGC 356
Query: 537 ISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCS 595
+ I++ + ++++S CS V PKP + + + G +
Sbjct: 357 LKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKPGF---VELAAVSIDVGTEIN 412
Score = 125 bits (314), Expect = 5e-30
Identities = 63/585 (10%), Positives = 135/585 (23%), Gaps = 145/585 (24%)
Query: 52 VKLNVERM---MFVDGIGPFSGESQGAFQGLDL--SELVYIGAVPDFGEIHPSAGFSNGF 106
++V + + S + LD+ + ++++G + A F
Sbjct: 106 GSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTG-KIKKADAVRVITF 164
Query: 107 KGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
GC+ +N C
Sbjct: 165 TGCM--------------------------------GETYFDNKPIGLWN-FREKEGDCK 191
Query: 167 PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGS 226
+ F
Sbjct: 192 GCTVSPQVEDSEGTIQ---------------------------------------FDGEG 212
Query: 227 YLAYPTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDT 284
Y P V + +++Y D DF+S+ + + H++ +D
Sbjct: 213 YALVSRPIRWYPNISTVMFKFRTFS-SSALLMYLATRDLK--DFMSVELSDGHVKVSYDL 269
Query: 285 GSATP-LYSNDAPAFNPVSTKE------APYGSKITLT---------CNNDLEAPVEYTW 328
GS + SN + + + + ++ N +
Sbjct: 270 GSGMTSVVSNQ-----NHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFG 324
Query: 329 SKRSNGHVLPFGAFSRENTLTLQEIKNS----------DAGMYVCKVSNKDMTVEIPSIL 378
+ FG L + Y S+ D
Sbjct: 325 LDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEISRTPYNIL-SSPDYVGVTKGCS 383
Query: 379 LVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGD 438
L F + ++ L ++ + I LSF + +G+I+
Sbjct: 384 LENVYTVSFPKP--GFVELAAVS-IDVGTEINLSFSTRNESGIILLGSGGG-------QA 433
Query: 439 FVSFGLEDGYPVFRFDVGLVVLRSKVTLVPH------EWVVVTIIKDFKEGKLSVGGEPL 492
+ + L G G +R V V + + + + +
Sbjct: 434 YYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRR 493
Query: 493 IVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINS 552
+ + E+ + L++GG L F GC+ + + +D
Sbjct: 494 HMQNLTEEQPIEVK---KLFVGGAPPEFQPSPLRN--IPAFQGCVWNLVINSIPMDFAQP 548
Query: 553 AV-DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC 596
+A+I C+ KP ++ P + +
Sbjct: 549 IAFKNADIGRCTY--------QKPREDESEAVPAEVIVQPQPVPT 585
Score = 120 bits (301), Expect = 3e-28
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 17/223 (7%)
Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
CM N + E C P + F GEGY + + I
Sbjct: 167 CMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGT---IQFDGEGYALVSR-PIRW 222
Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
N T+ F F T +ALL++ ++F++V + +G+++ SYDLG G+ ++
Sbjct: 223 YPNISTVMFKFRTFSSSALLMYLATRD-----LKDFMSVELSDGHVKVSYDLGSGMTSV- 276
Query: 732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSV-----IVGKGESPGSQDVINTRGN--IYLG 784
S + NDG + ++RI K ++ + + S G+ ++ + + IY G
Sbjct: 277 VSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFG 336
Query: 785 GTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLH 827
G P + + V SG + +I I + + S G+
Sbjct: 337 GLPTLRNLRPEVNVKKYSGCLKDIEISRTPYNILSSPDYVGVT 379
Score = 105 bits (262), Expect = 2e-23
Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 20/187 (10%)
Query: 640 APPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSY 699
AP A + + V G+ + E+ ++ + I T + LL + G
Sbjct: 1 APLAQANSIKVS--VSSGGDCVRTYRPEI--KKGSYNNIVVHVKTAVADNLLFYLG---- 52
Query: 700 KNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVD 759
+ +F+A+ + G + + +D+G GV +++ ++D + + +R + GS+ V
Sbjct: 53 -SAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVR 111
Query: 760 SVI---------VGKGESPGSQDV--INTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNI 808
++ SP + ++ +++GG V +G M
Sbjct: 112 ALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGET 171
Query: 809 HIQNKHI 815
+ NK I
Sbjct: 172 YFDNKPI 178
Score = 104 bits (259), Expect = 4e-23
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 22/207 (10%)
Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
C+K D+ + Y L S Y + V F G+VEL
Sbjct: 356 CLK-DIEISRT-------PYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAV---S 404
Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV---V 728
I F T +++ ++L G+ + A+ + G LE G +
Sbjct: 405 IDVGTEINLSFSTRNESGIILLGSGG------GQAYYAIFLNKGRLEVHLSSGTRTMRKI 458
Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
IK +DG +HSV+V R ++++D Q +++GG P
Sbjct: 459 VIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEEQ--PIEVKKLFVGGAPP 516
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+ R + G + N+ I + +
Sbjct: 517 EFQPSPLRNIPAFQGCVWNLVINSIPM 543
Score = 96.3 bits (239), Expect = 1e-20
Identities = 32/230 (13%), Positives = 60/230 (26%), Gaps = 33/230 (14%)
Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
+ +I + K + L+ Y G DF++ + G F
Sbjct: 19 CVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGS------AKFIDFLAIEMRKGKVSFL 72
Query: 453 FDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSV----------GGEPLIVGSTPG 499
+DVG V +T+ W + + + G +SV S PG
Sbjct: 73 WDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPG 132
Query: 500 EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI 559
+ ++ L++GG F GC+ + D+ I
Sbjct: 133 YTILDVDANAMLFVGGLTGKIKKA--DAVRVITFTGCMG------------ETYFDNKPI 178
Query: 560 MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN 609
+ E C G + ++ +
Sbjct: 179 GLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNIST 228
Score = 44.7 bits (105), Expect = 1e-04
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 12/135 (8%)
Query: 51 YVKLNVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK 107
V + R + +D ++ Q +++ +L ++G P + P F+
Sbjct: 474 SVHVERTRGIFTVQIDE-DRRHMQNLTEEQPIEVKKL-FVGGAPPEFQPSPLRNIP-AFQ 530
Query: 108 GCVSRLKYNKTEFELFKMAV-ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
GCV L N + + + + C K + A + +
Sbjct: 531 GCVWNLVINSIPMDFAQPIAFKNADIGRCTYQKP-----REDESEAVPAEVIVQPQPVPT 585
Query: 167 PGFSGDRCSVLGEPC 181
P F +++ P
Sbjct: 586 PAFPFPAPTMVHGPA 600
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 120 bits (303), Expect = 1e-29
Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 14/200 (7%)
Query: 627 TPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDD 686
C A + ++ L + R + T
Sbjct: 3 LAQPELCAVDTAPGYVAGAHQFG------LSQNSHLVLPL-QQSDVRKRLQVQLSIRTFA 55
Query: 687 KNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVN 746
+ L+ + + + + + + G L + +DLG G + ++DG H+V
Sbjct: 56 SSGLIYYVAHQNQMD-----YATLQLQEGRLHFMFDLGKGRTKVS-HPALLSDGKWHTVK 109
Query: 747 VTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHP-MSGLM 805
I + + VD G ++ +YLGG P+ + + +
Sbjct: 110 TEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACI 169
Query: 806 MNIHIQNKHISNIGSSASSG 825
I + + + ++S
Sbjct: 170 GEIMVNGQQLDKDRPLSASA 189
Score = 117 bits (295), Expect = 1e-28
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 12/196 (6%)
Query: 387 FTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
F S+L LP +D ++LS + +GLI Y + + D+ + L+
Sbjct: 24 FGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAH------QNQMDYATLQLQ 77
Query: 446 DGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ 503
+G F FD+G + L +W V ++ ++V G+ + G K
Sbjct: 78 EGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVG-KAT 136
Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
L++ LYLGG ++ ++ +T CI I V G +LD + + ++ + C
Sbjct: 137 TLDVERKLYLGGLPSHYRARNIGT-ITHSIPACIGEIMVNGQQLDK-DRPLSASAVDRCY 194
Query: 564 DLESSPVCAPKPCQNY 579
+
Sbjct: 195 VVAQEGTFFEGSGYAA 210
Score = 115 bits (288), Expect = 1e-27
Identities = 68/397 (17%), Positives = 117/397 (29%), Gaps = 61/397 (15%)
Query: 200 CLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILY 257
C Q S+L P ++ ++ +V L + G+I Y
Sbjct: 9 CAVD---TAPGYVAGA--HQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFA-SSGLIYY 62
Query: 258 SGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAP----AFNPVSTKEAPYGSKIT 313
+ D+ +L ++E + F FD G S+ A ++ V T+ K
Sbjct: 63 VAHQNQM--DYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEY--IKRKAF 118
Query: 314 LTCNNDLEAPVEYTWSKRSNGHV-------------LPFGAFSRENTLTLQE----IKNS 356
+T + + + S G LP +R I
Sbjct: 119 MTVDG------QESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEI 172
Query: 357 DAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPT 416
+ +V F + L L I L F+ T
Sbjct: 173 MVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYK-VRLDLQITLEFRTT 231
Query: 417 DYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG------LVVLRSKVTLVPHE 470
NG+++ K D + + DG +F + G R+ L +
Sbjct: 232 SKNGVLLGISS-------AKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGK 284
Query: 471 WVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVT 530
W + K L+V G + S + P+Y+GGY + S+
Sbjct: 285 WHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTS-ADTNDPIYVGGYPAH--IKQNSLSSR 341
Query: 531 EGFHGCISTIDV----LGSELDLINSAVDSANIMDCS 563
F GC+ + + LDL + A D + S
Sbjct: 342 ASFRGCVRNLRLSRGSQVQSLDL-SRAFDLQGVFPHS 377
Score = 95.0 bits (236), Expect = 5e-21
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 10/164 (6%)
Query: 655 HFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVN 714
F G GY L KE + R + I +F T KN +LL + I + +V+
Sbjct: 202 FFEGSGYAALVKEGYK-VRLDLQITLEFRTTSKNGVLLGISSA------KVDAIGLEIVD 254
Query: 715 GYLEYSYDLGDGVVTIKF---SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
G + + + G G +T + + + + DG H++ + L VD V
Sbjct: 255 GKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTH 314
Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
+T IY+GG P G + N+ +
Sbjct: 315 STSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQ 358
Score = 61.9 bits (150), Expect = 3e-10
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
M VDG S G LD+ +Y+G +P ++ C+ + N +
Sbjct: 119 MTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQQ 178
Query: 120 FELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSG 171
+ + VD C GY + G+
Sbjct: 179 LDK-DRPLSASAVDRCYVVAQ--EGTFFEGS---------GYAALVKEGYKV 218
Score = 46.5 bits (110), Expect = 3e-05
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 21/149 (14%)
Query: 7 SRADGLPLQRYAEGN---VLRITNARLQ-----DSGKYKCEIQGHDSFRGSD----YVKL 54
+ +G+ L + L I + ++ +G+ Q + D ++
Sbjct: 231 TSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQA 290
Query: 55 NVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVS 111
+ + ++ VDG + D ++ +Y+G P S F+GCV
Sbjct: 291 HKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA-HIKQNSLSSRASFRGCVR 349
Query: 112 RLKYNKTEFEL---FKMAVERVGV--DSC 135
L+ ++ A + GV SC
Sbjct: 350 NLRLSRGSQVQSLDLSRAFDLQGVFPHSC 378
Score = 44.6 bits (105), Expect = 1e-04
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 7/112 (6%)
Query: 194 VDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG-SYLAYPTP--KTMRKFKVSLRLNPRDV 250
V+G +A + + F G Y A K +++L
Sbjct: 174 VNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTS- 232
Query: 251 RDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVS 302
++G++L D I L I + + F + G+ + A +
Sbjct: 233 KNGVLLGIS---SAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALC 281
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 115 bits (288), Expect = 1e-27
Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 15/213 (7%)
Query: 387 FTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
F S++A+ T +IEL + +GL+ Y N DF + L
Sbjct: 38 FGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN------HADFATVQLR 91
Query: 446 DGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ 503
+G+P F +D+G + +W + I++ +EG L V +P +
Sbjct: 92 NGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDAS-SQTISPKKA-D 149
Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
+L++ LY+GG I + T + VT GC+ + + + +DL + S ++ C
Sbjct: 150 ILDVVGILYVGGLPINYTTRRIGP-VTYSLDGCVRNLHMEQAPVDL-DQPTSSFHVGTCF 207
Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSC 596
S +
Sbjct: 208 ANAESGTYF--DGTGFAKAVGGFKVGLDLLVEF 238
Score = 111 bits (279), Expect = 2e-26
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 13/190 (6%)
Query: 627 TPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDD 686
P C P G ++ + + +N TI + T+
Sbjct: 15 VPTMVHGPCVAESEPALLTGSKQFG----LSRNSHIAIAF-DDTKVKNRLTIELEVRTEA 69
Query: 687 KNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVN 746
++ LL + + ++ + F V + NG+ +SYDLG G + +NDG H +
Sbjct: 70 ESGLLFYMARINHAD-----FATVQLRNGFPYFSYDLGSGDTSTM-IPTKINDGQWHKIK 123
Query: 747 VTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDLMTGGRYVHPMSGLM 805
+ R+ + G L VD + SP D+++ G +Y+GG P N G + + G +
Sbjct: 124 IVRVKQEGILYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCV 182
Query: 806 MNIHIQNKHI 815
N+H++ +
Sbjct: 183 RNLHMEQAPV 192
Score = 108 bits (270), Expect = 3e-25
Identities = 55/439 (12%), Positives = 106/439 (24%), Gaps = 85/439 (19%)
Query: 166 PPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
P P G C Q
Sbjct: 2 PLASVPTPAFPFPVPTMVH----GPCVAESEPALLTGS--------------KQFGLSRN 43
Query: 226 SYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD 283
S++A T + + L + G++ Y + + DF ++ +R F +D
Sbjct: 44 SHIAIAFDDTKVKNRLTIELEVRTEA-ESGLLFYMARINHA--DFATVQLRNGFPYFSYD 100
Query: 284 TGSATPLYSNDAP--------------------AFNPVSTKEAPYGSKITLTCNNDL--- 320
GS + S++ L L
Sbjct: 101 LGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVG 160
Query: 321 EAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPS 376
P+ YT + G + + L + +S + +
Sbjct: 161 GLPINYTTRRIGPVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTG 220
Query: 377 ILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
L E F+ T G+++ K
Sbjct: 221 FAKAVGGFK---------------VGLDLLVEFE--FRTTRPTGVLLGVSS-------QK 256
Query: 437 GDFVSFGLEDGYPVFRFDVG------LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE 490
D + + D +F D G + + +W VT K +L V G
Sbjct: 257 MDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGN 316
Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI 550
+ S + P+++GG+ + F GCI ++ + +
Sbjct: 317 QVDAQSPNSASTS-ADTNDPVFVGGFP--GGLNQFGLTTNIRFRGCIRSLKLTKGTGKPL 373
Query: 551 NSAVDSANIMDCSDLESSP 569
V+ A ++ ++
Sbjct: 374 --EVNFAKALELRGVQPVS 390
Score = 95.8 bits (238), Expect = 3e-21
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 11/168 (6%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
+F G G+ + + + + F+F T +LL + + + ++
Sbjct: 214 TYFDGTGFAKAVGGF--KVGLDLLVEFEFRTTRPTGVLLGVSSQK------MDGMGIEMI 265
Query: 714 NGYLEYSYDLGDGVVTIKFS---KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
+ L + D G G T + + +G H V +I L VD V
Sbjct: 266 DEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNS 325
Query: 771 SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNI 818
+ +T +++GG P G G + ++ + +
Sbjct: 326 ASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPL 373
Score = 53.9 bits (129), Expect = 1e-07
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 21/110 (19%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
++VD S LD+ ++Y+G +P + GCV L +
Sbjct: 133 LYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQAP 191
Query: 120 FELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF 169
+L + + + G C A T GF
Sbjct: 192 VDL------------------DQPTSSFHVGTCFANAES--GTYFDGTGF 221
Score = 48.5 bits (115), Expect = 6e-06
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 52 VKLNVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKG 108
V + + VDG + A D ++ V++G P G + F+G
Sbjct: 300 VTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG-GLNQFGLTTNIRFRG 358
Query: 109 CVSRLKYNKTEFEL----FKMAVERVGV--DSC 135
C+ LK K + F A+E GV SC
Sbjct: 359 CIRSLKLTKGTGKPLEVNFAKALELRGVQPVSC 391
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 107 bits (269), Expect = 9e-27
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
Q+P++ + S + D G+I Y + K D+ GL D
Sbjct: 22 PGQEPIAVMTFDLTKITK--TSSSFEVRTWDPEGVIFYGDTNP------KDDWFMLGLRD 73
Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSV-GGEPLIVGSTPGEKLQ 503
G P + + + + L W V + + L V G E L + G
Sbjct: 74 GRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTS 133
Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSAN 558
+ + LGG + +L + + GC+ L + ++ SA S
Sbjct: 134 KRHPIMRIALGG--LLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLR 186
Score = 98.4 bits (245), Expect = 1e-23
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 10/171 (5%)
Query: 656 FLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNG 715
E + +L + + + +F+ T D ++ + ++ + + +G
Sbjct: 22 PGQEPIAVMTFDLTKITKT--SSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDG 74
Query: 716 YLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVD--SVIVGKGESPGSQD 773
E +T+ + ++DG H V V LEVD V+ + S
Sbjct: 75 RPEIQLHNHWAQLTVG-AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTS 133
Query: 774 VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASS 824
+ I LGG V + G + +K S+ +S
Sbjct: 134 KRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTS 184
Score = 48.0 bits (114), Expect = 3e-06
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 219 QPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM 278
P + + + + K + K S + D +G+I Y + D+ L +R+
Sbjct: 21 GPGQEPIAVMTFDLTK-ITKTSSSFEVRTWD-PEGVIFYGDTNPKD--DWFMLGLRDGRP 76
Query: 279 EFRFDTGSAT 288
E + A
Sbjct: 77 EIQLHNHWAQ 86
Score = 40.3 bits (94), Expect = 0.001
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 59 MMFVDGIGPFSGE--SQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYN 116
++ VDG S + +G + + GC+ R +
Sbjct: 113 LLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF-PASNLRLPLVPALDGCLRRDSWL 171
Query: 117 KTEFELFKMAVERVGVDSC 135
+ E+ A + SC
Sbjct: 172 DKQAEISASA--PTSLRSC 188
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 106 bits (266), Expect = 1e-26
Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)
Query: 651 GSEVHFL-GEGYVELK-KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFI 708
GS F G G + K + +A F T K A+L+ S +++
Sbjct: 4 GSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLG----DYL 59
Query: 709 AVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSV-IVGKGE 767
+ + G + +++G + I+ S +NDG H V TR +L+VDS ++ +
Sbjct: 60 ELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYP 119
Query: 768 SPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLH 827
+ + N++ I +GG P G + ++ + N+ + + +
Sbjct: 120 AGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLYYNGLKVLNMAAENDANIA 170
Query: 828 VM 829
++
Sbjct: 171 IV 172
Score = 89.9 bits (223), Expect = 6e-21
Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 20/173 (11%)
Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
++Y P + + + F +++ S+ G GD++ + G
Sbjct: 16 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 70
Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
+F+VG + + S + ++ VV + L V P+I G +L + N +
Sbjct: 71 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 130
Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSANIM 560
+ +GG E + F G +S + G + L++ + I+
Sbjct: 131 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 172
Score = 47.6 bits (113), Expect = 2e-06
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 222 FKHGSYLAYPTP----KTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
K G + Y P + R ++++ + ++ +++ S GLGD++ L I +
Sbjct: 10 SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 67
Query: 278 MEFRFDTGSATPLYSNDAPAFN 299
+ +F+ G+ N
Sbjct: 68 IGVKFNVGTDDIAIEESNAIIN 89
Score = 37.9 bits (88), Expect = 0.004
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 11/58 (18%)
Query: 60 MFVDGIGPFSGESQ-GAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYN 116
+ VD + + IG F+G +S L YN
Sbjct: 107 LQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYN 154
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 106 bits (266), Expect = 1e-26
Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 10/173 (5%)
Query: 651 GSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAV 710
+ + + G +++++ + E ++ F + +L+ + + +
Sbjct: 5 ATVLSYDGSMFMKIQL-PVVMHTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRL 58
Query: 711 AVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
+ G ++ + +LG G T+ F+ +ND H+V V R K L VD G+ G
Sbjct: 59 ELDAGRVKLTVNLGKGPETL-FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAG 117
Query: 771 SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSAS 823
+ NI G ++ G + ++ ++ +
Sbjct: 118 DHTRLEF-HNIETGIITERRYLSSVP--SNFIGHLQSLTFNGMAYIDLCKNGD 167
Score = 99.2 bits (247), Expect = 5e-24
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 26/200 (13%)
Query: 382 DSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVS 441
+V + + LP + + L F+ G++M T + D +
Sbjct: 5 ATVLSYDGSMFMKIQLPVVMHTE-AEDVSLRFRSQRAYGILMATTS------RDSADTLR 57
Query: 442 FGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPG 499
L+ G ++G L + L +EW V +++ K KL+V + + G G
Sbjct: 58 LELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAG 117
Query: 500 EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSAN 558
+ + L + G V F G + ++ G +DL +
Sbjct: 118 DHTR-LEF-HNIETGII----TERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNG----- 166
Query: 559 IMDCSDLESSPVCAPKPCQN 578
D++ + A +N
Sbjct: 167 -----DIDYCELNARFGFRN 181
Score = 51.0 bits (122), Expect = 2e-07
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
+ VD +G+ G L+ + G + + + + F G + L +N
Sbjct: 103 LTVDDQQAMTGQMAGDHTRLEFHNI-ETGIITER---RYLSSVPSNFIGHLQSLTFN--G 156
Query: 120 FELFKMAVERVGVDSCNTC 138
+ + +D C
Sbjct: 157 MAYIDLC-KNGDIDYCELN 174
Score = 47.2 bits (112), Expect = 4e-06
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 220 PAFKHGSYLAYPTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
++ ++ P M VSLR + GI++ + D D + L +
Sbjct: 8 LSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQR-AYGILMATTSRDSA--DTLRLELDAGR 64
Query: 278 MEFRFDTGS 286
++ + G
Sbjct: 65 VKLTVNLGK 73
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 112 bits (280), Expect = 2e-26
Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 32/242 (13%)
Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
C G G ++ + C C + K Y
Sbjct: 3 LAHCD-GRGGLKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRM----------------- 44
Query: 653 EVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAV 712
F G + L+ + ++ R FDF T D +LL+ G +I +A+
Sbjct: 45 ---FSGTPVIRLRFKRLQPTRL--VAEFDFRTFDPEGILLFAGGHQ-----DSTWIVLAL 94
Query: 713 VNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ 772
G LE S +N G+ +++V + + ++V+ V K G
Sbjct: 95 RAGRLELQLRYNGVGRVTS-SGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDL 153
Query: 773 ---DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
+ N+ +GG P + + G M + + N + I + +
Sbjct: 154 FQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQ 213
Query: 830 PW 831
+
Sbjct: 214 CF 215
Score = 108 bits (270), Expect = 3e-25
Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 20/202 (9%)
Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
F+ P+ L L E F+ D G++++ G ++ L
Sbjct: 45 FSGTPVIRLRFKRL--QPTRLVAEFDFRTFDPEGILLFAGGHQ------DSTWIVLALRA 96
Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE--KL 502
G + V S + W +++ + + + V + ++ + G+ +
Sbjct: 97 GRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQP 156
Query: 503 QVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
+ L +GG I L + GC+ + + L E I V M C
Sbjct: 157 ERGLYHLNLTVGG--IPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQC 214
Query: 563 SDLESSPVCAPKPCQNYGICYP 584
+ G +
Sbjct: 215 FS------VTERGSFYPGSGFA 230
Score = 98.3 bits (244), Expect = 6e-22
Identities = 63/429 (14%), Positives = 124/429 (28%), Gaps = 60/429 (13%)
Query: 171 GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAY 230
G + +C+D+ C + K + + L +
Sbjct: 1 APLAHCDGRGGLKLSQDMDTCEDI-----LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRF 55
Query: 231 PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPL 290
+ + D +GI+L++G D +I LA+R +E + +
Sbjct: 56 KRLQP-TRLVAEFDFRTFD-PEGILLFAGGHQDS--TWIVLALRAGRLELQLRYNGVGRV 111
Query: 291 YSNDAP----AFNPVSTKEAPYGSKITLTCNND----LEAPVEYTWSKRSNGHV------ 336
S+ + +S +E + + N D + + +R H+
Sbjct: 112 TSSGPVINHGMWQTISVEE--LARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGG 169
Query: 337 LPFGAFSRENT-----------LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
+PF +++ V + S
Sbjct: 170 IPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGF 229
Query: 386 LFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
F L T++ + +P G++ + + +S L
Sbjct: 230 AFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPD-----LRAVPLSVALV 284
Query: 446 DGYPVFRFDVGLVVLRSKVTLVPH--------EWVVVTIIKDFKEGKLSVGGEPLIVGST 497
D + + LVVL + T + + VVT+ E L V G +
Sbjct: 285 DYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVS 344
Query: 498 PGEKLQV-------LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI 550
+ + L + GG P S VT + GC++ ++V LDL
Sbjct: 345 AAQLQERLAVLERHLRSPVLTFAGGLP---DVPVTSAPVTAFYRGCMT-LEVNRRLLDLD 400
Query: 551 NSAVDSANI 559
+A ++I
Sbjct: 401 EAAYKHSDI 409
Score = 60.2 bits (145), Expect = 1e-09
Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 20/218 (9%)
Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
CM+ G ++ + + GS F Y+ ++ E
Sbjct: 188 CMR-SWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTE 246
Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVV--- 728
E + +L P + ++VA+V+ + V+
Sbjct: 247 STWEVEVVAHIRPAADTGVLFALWAPDLR----AVPLSVALVDYHSTKKLKKQLVVLAVE 302
Query: 729 --TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS--------QDVINTR 778
+ + V DG +H V V+ + +LEVD S + + +
Sbjct: 303 HTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSP 362
Query: 779 GNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHIS 816
+ GG P++ + T G M + + + +
Sbjct: 363 VLTFAGGLPDVPV-TSAPVTAFYRGC-MTLEVNRRLLD 398
Score = 45.6 bits (107), Expect = 5e-05
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSEL---VYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYN 116
+ V+ G + + +G +P + + GC+ +
Sbjct: 137 IKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEK-DLVQPINPRLDGCMRSWNWL 195
Query: 117 KTEFELFKMAVERVGVDSCNTCKSSKHNNC 146
E + V+ C +
Sbjct: 196 NGEDTTIQETVKVNTRMQCFSVTERGSFYP 225
Score = 37.9 bits (87), Expect = 0.012
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 62 VDGIGPFSGESQGAFQG--------LDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRL 113
VDG S S Q L L + G +PD SA + ++GC+ L
Sbjct: 334 VDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVP--VTSAPVTAFYRGCM-TL 390
Query: 114 KYNKTEFELFKMAVERVGV--DSC 135
+ N+ +L + A + + SC
Sbjct: 391 EVNRRLLDLDEAAYKHSDITAHSC 414
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 104 bits (261), Expect = 4e-26
Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
Q+P++ + S + D G+I Y + K D+ GL D
Sbjct: 10 PGQEPIAVMTFDLTKI--TKTSSSFEVRTWDPEGVIFYGDTNP------KDDWFMLGLRD 61
Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
G P + + + + L W V + + L V GE ++
Sbjct: 62 GRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----- 116
Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA 553
+ + LGG + +L + + GC+ L + ++ SA
Sbjct: 117 GHPIMRIALGG--LLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASA 163
Score = 95.0 bits (236), Expect = 9e-23
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 10/153 (6%)
Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
+ + + +F+ T D ++ + ++ + + +G E +T+
Sbjct: 24 KITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHWAQLTVG 78
Query: 732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
+ ++DG H V V LEVD V + + I LGG
Sbjct: 79 -AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLFPAS 133
Query: 792 MTGGRYVHPMSGLMMNIHIQNKHISNIGSSASS 824
V + G + +K S+ +S
Sbjct: 134 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTS 166
Score = 53.4 bits (128), Expect = 3e-08
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 219 QPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM 278
P + + + + K K S + D +G+I Y + D+ L +R+
Sbjct: 9 GPGQEPIAVMTFDLTKI-TKTSSSFEVRTWD-PEGVIFYGDTNPKD--DWFMLGLRDGRP 64
Query: 279 EFRFDTGSAT 288
E + A
Sbjct: 65 EIQLHNHWAQ 74
Score = 40.3 bits (94), Expect = 6e-04
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 59 MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKT 118
++ VDG + + +G + + GC+ R +
Sbjct: 101 LLEVDGEEVLRLRQVSGHPIMRI----ALGGLLF-PASNLRLPLVPALDGCLRRDSWLDK 155
Query: 119 EFELFKMAVERVGVDSC 135
+ E+ A + SC
Sbjct: 156 QAEI--SASAPTSLRSC 170
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 101 bits (252), Expect = 3e-24
Identities = 33/197 (16%), Positives = 78/197 (39%), Gaps = 15/197 (7%)
Query: 635 CSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERR-NEETIAFDFVTDDKNALLLW 693
++ +P + + + + G G + K + + +A F T K A+L+
Sbjct: 23 IAIYRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVR 82
Query: 694 NGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKF 753
S +++ + + G + +++G + I+ S +NDG H V TR
Sbjct: 83 VDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGN 138
Query: 754 GSLEVDSV-IVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQN 812
+L+VDS ++ + + + N++ I +GG P G + ++
Sbjct: 139 ATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLYYNG 189
Query: 813 KHISNIGSSASSGLHVM 829
+ N+ + + + ++
Sbjct: 190 LKVLNMAAENDANIAIV 206
Score = 90.5 bits (224), Expect = 1e-20
Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 21/191 (10%)
Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
++Y P + + + F +++ S+ G GD++ + G
Sbjct: 50 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 104
Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
+F+VG + + S + ++ VV + L V P+I G +L + N +
Sbjct: 105 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 164
Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSANIMDCSDLES 567
+ +GG E + F G +S + G + L++ + I+ L
Sbjct: 165 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRL-V 212
Query: 568 SPVCAPKPCQN 578
V + ++
Sbjct: 213 GEVPSSMTTES 223
Score = 43.1 bits (101), Expect = 1e-04
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 222 FKHGSYLAYPTP----KTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
K G + Y P + R ++++ + ++ +++ S GLGD++ L I +
Sbjct: 44 SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 101
Query: 278 MEFRFDTGS 286
+ +F+ G+
Sbjct: 102 IGVKFNVGT 110
Score = 40.8 bits (95), Expect = 0.001
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 19/104 (18%)
Query: 60 MFVDGIGPFSG-ESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKT 118
+ VD + + + IG F+G +S L YN
Sbjct: 141 LQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYNGL 190
Query: 119 EFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYT 162
++ MA E + N + + T T
Sbjct: 191 --KVLNMAAENDANIAIV------GNVRLVGEVPSSMTTESTAT 226
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 89.4 bits (221), Expect = 2e-20
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 651 GSEVHFL-GEGYVELK-KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFI 708
G+ F G G + K + +A F T K A+L+ S +++
Sbjct: 10 GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLG----DYL 65
Query: 709 AVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGES 768
+ + G + +++G + I+ S +NDG H V TR +L+VDS V +
Sbjct: 66 ELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYP 125
Query: 769 PGSQD-----VINTRGNIYLGGTPNMDLMTGGRYVH 799
G+ D + R LG + L+ GR +
Sbjct: 126 AGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLT 161
Score = 75.9 bits (186), Expect = 1e-15
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 27/173 (15%)
Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
++Y P + + + F +++ S+ G GD++ + G
Sbjct: 22 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 76
Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPG----EKLQV 504
+F+VG + + S + ++ VV + L V P+I G E+L +
Sbjct: 77 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAI 136
Query: 505 LNLRTPLYLGG------------YNIYHVTPSLSV---EVTEGFHGCISTIDV 542
R P LG I++ ++ + E + F G +S +
Sbjct: 137 ARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYY 189
Score = 44.0 bits (103), Expect = 8e-05
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 222 FKHGSYLAYPTPK----TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
K G + Y P + R ++++ + ++ +++ S GLGD++ L I +
Sbjct: 16 SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 73
Query: 278 MEFRFDTGS 286
+ +F+ G+
Sbjct: 74 IGVKFNVGT 82
Score = 28.6 bits (63), Expect = 7.6
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 23/91 (25%)
Query: 60 MFVDGIGPFSGESQGAFQGLDLSEL-----VYIGAVPDFGEIH----------------P 98
+ VD G L+ +G V D +
Sbjct: 113 LQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIG 172
Query: 99 SAGFSNGFKGCVSRLKYNKTEFELFKMAVER 129
F+G +S L YN ++ MA E
Sbjct: 173 GKEQGQPFQGQLSGLYYNG--LKVLNMAAEN 201
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 80.7 bits (200), Expect = 3e-18
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 556 SANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKG 615
+ ++ +CS PC++ G C +T + C CL GY+G CE + N C+
Sbjct: 2 AQDVDECS-------LGANPCEHAGKC--INTLG-SFECQCLQGYTGPRCEIDVNECV-S 50
Query: 616 DVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
+ C+N C ++C+C GY +C
Sbjct: 51 NPCQNDATCLDQIGEFQCICMPGYEGVHC 79
Score = 76.5 bits (189), Expect = 1e-16
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN C + C C+ GY G HCE + C C + G C +
Sbjct: 48 CVSNPCQNDATCLDQIG---EFQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKINE 103
Query: 631 YECLCSLGYAPPNC 644
++C C G+ C
Sbjct: 104 FQCECPTGFTGHLC 117
Score = 73.0 bits (180), Expect = 1e-15
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGS 190
VD C S N C + G C + + C C G++G RC + C C D +
Sbjct: 5 VDEC----SLGANPCEHAGKCINTLG--SFECQCLQGYTGPRCEIDVNECVSNPCQNDAT 58
Query: 191 CQDVDGAMKCLCPIGTAGKRCEQKI 215
C D G +C+C G G CE
Sbjct: 59 CLDQIGEFQCICMPGYEGVHCEVNT 83
Score = 70.3 bits (173), Expect = 1e-14
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDV 194
N C S N C N+ C D + CIC PG+ G C V + C C +G C D
Sbjct: 46 NECVS---NPCQNDATCLDQIG--EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK 100
Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
+C CP G G C+ +
Sbjct: 101 INEFQCECPTGFTGHLCQVDL 121
Score = 52.6 bits (127), Expect = 2e-08
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD-VCKNG 621
CA PC + G C + C C TG++G C+ + + + + N
Sbjct: 86 CASSPCLHNGRCLDKIN---EFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134
Score = 48.8 bits (117), Expect = 4e-07
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
+ C S + C++NG C D + C CP GF+G C V + +
Sbjct: 84 DECAS---SPCLHNGRCLDKIN--EFQCECPTGFTGHLCQVDLHHILDAQKMVWNHR 135
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 77.7 bits (192), Expect = 4e-17
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN G C D Y C+CL G+ G +CE D C +S
Sbjct: 45 CETSPCQNQGKC--KDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 631 YECLCSLGYAPPNC 644
C C+ GY +
Sbjct: 102 VVCSCARGYTLADN 115
Score = 68.9 bits (169), Expect = 4e-14
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS-VLGEPCYPGACG-DGSCQ 192
+ C++ + C N G C+D YTC C GF G C + C D C
Sbjct: 42 GDQCET---SPCQNQGKCKDGLG--EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96
Query: 193 DVDGAMKCLCPIGTAGKRCEQKI 215
+ ++ C C G +
Sbjct: 97 EEQNSVVCSCARGYTLADNGKAC 119
Score = 63.8 bits (156), Expect = 2e-12
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC 633
+ C Y R + K+ + C + C+N G CK Y C
Sbjct: 10 RECMEETCSY---EEAREVFEDSDKTNEFWNKYKDGDQC-ETSPCQNQGKCKDGLGEYTC 65
Query: 634 LCSLGYAPPNC 644
C G+ NC
Sbjct: 66 TCLEGFEGKNC 76
Score = 60.4 bits (147), Expect = 4e-11
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPI 204
C+ + A G+ C C G C+D G C C
Sbjct: 12 CMEETCSYEEAR--EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 205 GTAGKRCEQKI 215
G GK CE
Sbjct: 70 GFEGKNCELFT 80
Score = 58.1 bits (141), Expect = 3e-10
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
C+ C+ S CSC GY+ K C + +
Sbjct: 84 CSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP-YPCGKQTLER 134
Score = 51.5 bits (124), Expect = 6e-08
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQ 192
+N + C + C C G++ P P CG +
Sbjct: 87 DNGDCDQFCHEEQN--SVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 77.1 bits (190), Expect = 8e-17
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 558 NIMDCSDLESSPV---CAPKPCQNYGICYPTDTSER----GYNCSCLTGYSGDHCEKENN 610
+ SD E C P PC N G C ++ GY C C G++G HC+ N
Sbjct: 39 VVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98
Query: 611 MCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
C CKNGG+C +Y C C + NC
Sbjct: 99 ECEVEP-CKNGGICTDLVANYSCECPGEFMGRNC 131
Score = 75.5 bits (186), Expect = 3e-16
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV-----------CK 619
C P PC+N GIC P ++ ++C C G++ +C + + C
Sbjct: 3 CDPNPCENGGICLP-GLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 620 NGGMCKVTP-------DSYECLCSLGYAPPNC 644
NGG C+++ Y C C G+ +C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHC 93
Score = 69.4 bits (170), Expect = 4e-14
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRI-----GYTCICPPGFSGDRCSVLGEPCYPGAC-GDG 189
C N C N G C+ + GY C CP GF+G C C C G
Sbjct: 53 GPCTP---NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGG 109
Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
C D+ C CP G+ C+ K
Sbjct: 110 ICTDLVANYSCECPGEFMGRNCQYKG 135
Score = 65.1 bits (159), Expect = 1e-12
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG---------- 187
C + C N G+C ++C CP GF+ CS + E
Sbjct: 3 CDPNP---CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 188 ---DGSCQ-------DVDGAMKCLCPIGTAGKRCEQKI 215
G+C+ D C CP G G C+ I
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNI 97
Score = 48.6 bits (116), Expect = 6e-07
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMC 612
C +PC+N GIC TD Y+C C + G +C+ +
Sbjct: 100 CEVEPCKNGGIC--TDL-VANYSCECPGEFMGRNCQYKGGGH 138
Score = 46.6 bits (111), Expect = 3e-06
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY 182
N C+ C N G+C D Y+C CP F G C G +
Sbjct: 98 NECEV---EPCKNGGICTDLVA--NYSCECPGEFMGRNCQYKGGGHH 139
Score = 36.6 bits (85), Expect = 0.008
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 618 CKNGGMC--KVTPDSYECLCSLGYAPPNCAKRV 648
C+NGG+C + S+ C C G+ PNC+ V
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVV 40
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 78.3 bits (193), Expect = 1e-16
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PCQN G C D Y C+CL G+ G +CE D C +S
Sbjct: 45 CETSPCQNQGKC--KDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 631 YECLCSLGYAPPNCAKRV 648
C C+ GY + K
Sbjct: 102 VVCSCARGYTLADNGKAC 119
Score = 69.8 bits (171), Expect = 8e-14
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C+ C+ S CSC GY+ K C + +
Sbjct: 84 CSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP-YPCGKQTLERRKRSV 139
Query: 631 YECLCSLGYAPPNC 644
+ S G AP +
Sbjct: 140 AQATSSSGEAPDSI 153
Score = 69.0 bits (169), Expect = 2e-13
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-LGEPCYPGACG-DGSCQ 192
+ C++ + C N G C+D YTC C GF G C + + C D C
Sbjct: 42 GDQCET---SPCQNQGKCKDGLG--EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96
Query: 193 DVDGAMKCLCPIGTAGKRCEQKI 215
+ ++ C C G +
Sbjct: 97 EEQNSVVCSCARGYTLADNGKAC 119
Score = 62.5 bits (152), Expect = 3e-11
Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 4/74 (5%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDVDGAMKCLC 202
+N + C + C C G++ P P CG + +
Sbjct: 87 DNGDCDQFCHEEQN--SVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATS 144
Query: 203 PIG-TAGKRCEQKI 215
G +
Sbjct: 145 SSGEAPDSITWKPY 158
Score = 62.1 bits (151), Expect = 4e-11
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C + C + K+ + C + C+N G CK
Sbjct: 12 CMEETCSYEEAR--------EVFEDSDKTNEFWNKYKDGDQC-ETSPCQNQGKCKDGLGE 62
Query: 631 YECLCSLGYAPPNC 644
Y C C G+ NC
Sbjct: 63 YTCTCLEGFEGKNC 76
Score = 55.9 bits (135), Expect = 5e-09
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDVDGAMKCLCPI 204
C+ + A G+ C C G C+D G C C
Sbjct: 12 CMEETCSYEEAR--EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 205 GTAGKRCEQKI 215
G GK CE
Sbjct: 70 GFEGKNCELFT 80
Score = 47.8 bits (114), Expect = 3e-06
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 5/67 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD-HCEKENNMCMKGDVCKNGGMCKVTPD 629
P PC + + + +G + D K + D +N
Sbjct: 122 TGPYPCGKQTLERRKRS---VAQATSSSGEAPDSITWKPYDAAD-LDPTENPFDLLDFNQ 177
Query: 630 SYECLCS 636
+
Sbjct: 178 TQPERGD 184
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 75.9 bits (187), Expect = 4e-16
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-PD 629
C P P +GIC + C C T + G C+K+ N C C NGG C T PD
Sbjct: 99 CIPHPGCVHGIC------NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152
Query: 630 SYECLCSLGYAPPNC 644
Y+C C GY+ PNC
Sbjct: 153 KYQCSCPEGYSGPNC 167
Score = 63.5 bits (155), Expect = 8e-12
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-LGEPCYPGAC-GDGSCQ 192
C+ C + +G+C + + C+C + G C L C G+C
Sbjct: 96 CDKCIP---HPGCVHGICNE-----PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCS 147
Query: 193 DVD-GAMKCLCPIGTAGKRCE 212
+ +C CP G +G CE
Sbjct: 148 NTGPDKYQCSCPEGYSGPNCE 168
Score = 62.8 bits (153), Expect = 2e-11
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
+ ++G E +C Y G C K C D C
Sbjct: 1 MRGSHHHHHHGSI------EGRSAVTCDDYYYGFGCNKF---CRPRDDFFGHYACD---Q 48
Query: 630 SYECLCSLGYAPPNCAKRV 648
+ C G+ P C + +
Sbjct: 49 NGNKTCMEGWMGPECNRAI 67
Score = 60.1 bits (146), Expect = 1e-10
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT 627
+ C P+ ++ N +C+ G+ G C + G CK
Sbjct: 31 NKFCRPRDDFFGHYAC-----DQNGNKTCMEGWMGPECNRAICRQ---GCSPKHGSCK-- 80
Query: 628 PDSYECLCSLGYAPPNCAKRVS 649
+C C G+ C K +
Sbjct: 81 -LPGDCRCQYGWQGLYCDKCIP 101
Score = 59.3 bits (144), Expect = 2e-10
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 16/79 (20%)
Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK-ENNMCMKGDVCKNGGMCK 625
+ +C +G C + +C C G+ G +C+K + +C
Sbjct: 64 NRAICRQGCSPKHGSC------KLPGDCRCQYGWQGLYCDKCIPHPGCVHGICN------ 111
Query: 626 VTPDSYECLCSLGYAPPNC 644
+ ++CLC + C
Sbjct: 112 ---EPWQCLCETNWGGQLC 127
Score = 57.0 bits (138), Expect = 1e-09
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 133 DSCNT--CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDG 189
CN C+ +G C+ C C G+ G C + C P G
Sbjct: 61 PECNRAICRQ---GCSPKHGSCKL-----PGDCRCQYGWQGLYC----DKCIPHPGCVHG 108
Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
C + +CLC G+ C++ +
Sbjct: 109 ICNEPW---QCLCETNWGGQLCDKDL 131
Score = 57.0 bits (138), Expect = 1e-09
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCP 203
++ ++G + C + G C+ P D +G C
Sbjct: 5 HHHHHHGSIEG-----RSAVTCDDYYYGFGCNKFCRPRDD--FFGHYACDQNG--NKTCM 55
Query: 204 IGTAGKRCEQKIKILQPAFKHGS 226
G G C + I + KHGS
Sbjct: 56 EGWMGPECNRAICRQGCSPKHGS 78
Score = 47.0 bits (112), Expect = 4e-06
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
+PC N G C ++T Y CSC GYSG +CE
Sbjct: 135 GTHQPCLNGGTC--SNTGPDKYQCSCPEGYSGPNCE 168
Score = 45.8 bits (109), Expect = 8e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
N C + H C+N G C + Y C CP G+SG C +
Sbjct: 132 NYCGT--HQPCLNGGTCSNTGPD-KYQCSCPEGYSGPNCEI 169
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 72.4 bits (178), Expect = 4e-15
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVT 627
CA PCQN G C D + Y C CL + G +CE + + +NGG C
Sbjct: 50 CASSPCQNGGSC--KDQ-LQSYICFCLPAFEGRNCETHKDDQLICV-NENGGCEQYCSDH 105
Query: 628 PDS-YECLCSLGYAPPNC 644
+ C C GY+
Sbjct: 106 TGTKRSCRCHEGYSLLAD 123
Score = 67.7 bits (166), Expect = 1e-13
Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-----LGEPCYPGACGDG 189
+ C S + C N G C+D Y C C P F G C L G C
Sbjct: 47 GDQCAS---SPCQNGGSCKDQLQ--SYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
C C G +
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 49.6 bits (119), Expect = 3e-07
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
+ + N C D +C C G+S V P CG
Sbjct: 85 KDDQLICVNENGGCEQYCSDHTGT-KRSCRCHEGYSLLADGVSCTPTVEYPCGKIPI 140
Score = 47.7 bits (114), Expect = 1e-06
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPI 204
C C R + G+ C C GSC+D + C C
Sbjct: 17 CKE-EQCSFEEAREIFKD-AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLP 74
Query: 205 GTAGKRCEQKI 215
G+ CE
Sbjct: 75 AFEGRNCETHK 85
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C + C +ER + + + C C+NGG CK S
Sbjct: 17 CKEEQCSFEEAREIFKDAERTK-----LFW---ISYSDGDQC-ASSPCQNGGSCKDQLQS 67
Query: 631 YECLCSLGYAPPNC 644
Y C C + NC
Sbjct: 68 YICFCLPAFEGRNC 81
Score = 46.6 bits (111), Expect = 3e-06
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 571 CAPKPCQNYGIC-YPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMC 624
+N G Y +D + +C C GYS ++ C +
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE-YPCGKIPIL 141
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 72.0 bits (177), Expect = 5e-15
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY-PGACGDGSCQD 193
+ C+ N C+N GLC+D Y C C GF G C + G C
Sbjct: 48 GDQCEP---NPCLNGGLCKDDIN--SYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG 102
Query: 194 VDGAMKCLCPIGTAGKRCEQKI 215
D + C C G ++
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSC 124
Score = 71.6 bits (176), Expect = 7e-15
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C P PC N G+C D Y C C G+ G +CE + + + CK DS
Sbjct: 51 CEPNPCLNGGLC--KD-DINSYECWCQVGFEGKNCELDATCNI--KNGRCKQFCKTGADS 105
Query: 631 -YECLCSLGYAPPNC 644
C C+ GY
Sbjct: 106 KVLCSCTTGYRLAPD 120
Score = 50.0 bits (120), Expect = 2e-07
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
C K + C ++ CSC TGY +K + C +
Sbjct: 88 CNIKNGRCKQFC--KTGADSKVLCSCTTGYRLAPDQKSCKPAVP-FPCGRVSVSH 139
Score = 48.9 bits (117), Expect = 6e-07
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 590 RGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
R + + + C + + C NGG+CK +SYEC C +G+ NC
Sbjct: 29 REVFENTEKTNEFWKQYVDGDQC-EPNPCLNGGLCKDDINSYECWCQVGFEGKNC 82
Score = 48.1 bits (115), Expect = 1e-06
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
C + N C+ A C C G+ +P P CG S
Sbjct: 82 CELDATCNIKNGRCKQFCKTGADS-KVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSV 137
Score = 47.7 bits (114), Expect = 1e-06
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 163 CICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCEQKI 215
+ V G+ C P C G C+D + +C C +G GK CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 65.9 bits (161), Expect = 3e-13
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM-KGDVCKNGGMCKVTPD 629
C +G C D ++C C +G+ G C++E + D C
Sbjct: 17 PCASLCCGHGTC--IDG-IGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG 73
Query: 630 SYECLCSLGYAPPNCAK 646
C C+ GY +
Sbjct: 74 WRRCSCAPGYKLGDDLL 90
Score = 60.1 bits (146), Expect = 3e-11
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC----SVLGEPCYPGACGDG 189
+ + C +G C D ++C C G+ G C S L G C
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIG--SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT-H 66
Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
C + G +C C G +
Sbjct: 67 YCLEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 47.8 bits (114), Expect = 6e-07
Identities = 13/53 (24%), Positives = 17/53 (32%)
Query: 598 TGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSI 650
GD C +C G C S+ C C G+ C + VS
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF 54
Score = 43.9 bits (104), Expect = 2e-05
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 4/55 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
C+ C CSC GY + + +K C
Sbjct: 57 CSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGDDLLQCHPAVK-FPCGRPWKRM 107
Score = 43.2 bits (102), Expect = 3e-05
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
V N C +N C + C C PG+ + P CG
Sbjct: 52 VSFLN-CSL---DNGGCTHYCLEEVG--WRRCSCAPGYKLGDDLLQCHPAVKFPCG 101
Score = 39.3 bits (92), Expect = 6e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 168 GFSGDRCSV--LGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
GD+C V L PC CG G+C D G+ C C G G+ C++++ L + +G
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNG 62
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 67.8 bits (166), Expect = 3e-12
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C +PC + G C + GY C+C GY G +CE N C C +S
Sbjct: 8 CISQPCLHNGSCQDSI---WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQES 64
Query: 631 YECLCSLGYAPPNC 644
Y C C+ GY
Sbjct: 65 YTCSCAQGYRLGED 78
Score = 59.0 bits (143), Expect = 2e-09
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGS--CQDVD 195
C S C++NG CQD+ GYTC C PG+ G C + C+P C
Sbjct: 8 CISQP---CLHNGSCQDSIW--GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62
Query: 196 GAMKCLCPIGTAGKRCEQ 213
+ C C G +
Sbjct: 63 ESYTCSCAQGYRLGEDHK 80
Score = 41.2 bits (97), Expect = 0.001
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 171 GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKI 215
G C + +PC +GSCQD C C G G CE
Sbjct: 5 GSPC--ISQPC----LHNGSCQDSIWGYTCTCSPGYEGSNCELAK 43
Score = 40.5 bits (95), Expect = 0.002
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 602 GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVS 649
G C + C + G C+ + Y C CS GY NC +
Sbjct: 5 GSPCI--SQPC------LHNGSCQDSIWGYTCTCSPGYEGSNCELAKN 44
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
N C + + C + C + YTC C G+ P ACG
Sbjct: 44 NECHPERTDGCQHF--CLP--GQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 66.0 bits (161), Expect = 1e-11
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTP 628
C P+PC+N G C C C GY GD C K C G C
Sbjct: 245 SKC-PQPCRNGGKCI------GKSKCKCSKGYQGDLCSKPVCEP----GCGAHGTCH--- 290
Query: 629 DSYECLCSLGYAPPNCAKRV 648
+ +C C G+ +C KR
Sbjct: 291 EPNKCQCQEGWHGRHCNKRY 310
Score = 64.1 bits (156), Expect = 4e-11
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
P C+N G C C C G+ G HCEK C NGG+C
Sbjct: 150 ECPGGCRNGGFC------NERRICECPDGFHGPHCEKALCTP----RCMNGGLCV---TP 196
Query: 631 YECLCSLGYAPPNC 644
C+C G+ NC
Sbjct: 197 GFCICPPGFYGVNC 210
Score = 63.3 bits (154), Expect = 8e-11
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C N G C+ C C G G+ C E + C C+NGG C
Sbjct: 214 NCSTTCFNGGTCFYP------GKCICPPGLEGEQC--EISKCP--QPCRNGGKCI---GK 260
Query: 631 YECLCSLGYAPPNCAKRV 648
+C CS GY C+K V
Sbjct: 261 SKCKCSKGYQGDLCSKPV 278
Score = 62.6 bits (152), Expect = 1e-10
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C N G+C C C G+ G +C+K N C NGG C
Sbjct: 182 LCTPRCMNGGLC------VTPGFCICPPGFYGVNCDKANCST----TCFNGGTCF---YP 228
Query: 631 YECLCSLGYAPPNC 644
+C+C G C
Sbjct: 229 GKCICPPGLEGEQC 242
Score = 61.4 bits (149), Expect = 3e-10
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDV 194
C K C N G C C C G+ GD CS C PG G+C +
Sbjct: 242 CEISKCP--QPCRNGGKCIG-----KSKCKCSKGYQGDLCSK--PVCEPGCGAHGTCHEP 292
Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
+ KC C G G+ C ++
Sbjct: 293 N---KCQCQEGWHGRHCNKRY 310
Score = 61.4 bits (149), Expect = 3e-10
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
+C + C N G C + C CP GF G C C P G C
Sbjct: 144 KTCQQAECP--GGCRNGGFCNE-----RRICECPDGFHGPHCEK--ALCTPRCMNGGLCV 194
Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
C+CP G G C++
Sbjct: 195 TPG---FCICPPGFYGVNCDK 212
Score = 60.3 bits (146), Expect = 7e-10
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDV 194
C+ S C N G C CICPPG G++C + C G C
Sbjct: 210 CDKANCS--TTCFNGGTCFY-----PGKCICPPGLEGEQCEI--SKCPQPCRNGGKCIGK 260
Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
KC C G G C + +
Sbjct: 261 S---KCKCSKGYQGDLCSKPV 278
Score = 54.1 bits (130), Expect = 8e-08
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
+ + ++ + C++ C G C+NGG C
Sbjct: 110 LGKQDGVAAFEVDVIVM---NSEGNTILKTPQNAIFFKTCQQ--AECPGG--CRNGGFCN 162
Query: 626 VTPDSYECLCSLGYAPPNC 644
+ C C G+ P+C
Sbjct: 163 ---ERRICECPDGFHGPHC 178
Score = 52.9 bits (127), Expect = 2e-07
Identities = 13/82 (15%), Positives = 17/82 (20%), Gaps = 13/82 (15%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+ G C C G G C +
Sbjct: 114 DGVAAFEVDVIVMNSEGNT--------ILKTPQNAIFFKTCQQ--AECPGGCRNGGFCNE 163
Query: 194 VDGAMKCLCPIGTAGKRCEQKI 215
C CP G G CE+ +
Sbjct: 164 RR---ICECPDGFHGPHCEKAL 182
Score = 50.6 bits (121), Expect = 9e-07
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG 622
S PVC P C +G C C C G+ G HC K + G +
Sbjct: 275 SKPVCEP-GCGAHGTC------HEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 48.3 bits (115), Expect = 5e-06
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC 186
C +G C + C C G+ G C+ E G
Sbjct: 280 EPGCGAHGTCHE-----PNKCQCQEGWHGRHCNKRYEASLIGTK 318
Score = 34.8 bits (80), Expect = 0.091
Identities = 8/83 (9%), Positives = 16/83 (19%), Gaps = 10/83 (12%)
Query: 132 VDSCNTCKSSKHNNCIN-NGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGS 190
+ S + + + G A+ + C G
Sbjct: 75 LRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAF---------EVDVIV 125
Query: 191 CQDVDGAMKCLCPIGTAGKRCEQ 213
+ K C+Q
Sbjct: 126 MNSEGNTILKTPQNAIFFKTCQQ 148
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 64.0 bits (155), Expect = 8e-11
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 561 DCSDLESSPVCA-PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK 619
C P C C N +C C C G+ G CE+E M +
Sbjct: 279 ACHPGFYGPDCKLRCSCNNGEMCDRF------QGCLCSPGWQGLQCEREGIPRMTPKIVD 332
Query: 620 NGGMCKVTPDSYECLC-SLGYAPPNC 644
+V + +C + G+ P
Sbjct: 333 LPDHIEVNSGKFNPICKASGWPLPTN 358
Score = 63.6 bits (154), Expect = 1e-10
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE----------NNMCMKGDVCKN 620
C N G+C+ C C G+ G CEK C + CK+
Sbjct: 200 HLCTACMNNGVCHEDT-----GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS 254
Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRVSIG 651
C PD Y C C+ G+ C + G
Sbjct: 255 YVFC--LPDPYGCSCATGWKGLQCNEACHPG 283
Score = 62.0 bits (150), Expect = 3e-10
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
+ + ++ G +A C G C+ L C G C
Sbjct: 156 LPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNN----GVC 211
Query: 192 QDVDGAMKCLCPIGTAGKRCEQKI 215
+ G +C+CP G G+ CE+
Sbjct: 212 HEDTG--ECICPPGFMGRTCEKAC 233
Score = 60.5 bits (146), Expect = 1e-09
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 134 SCNTCKSSKH--NNCINNGLCQDAAT--RIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
+C + C C+ Y C C G+ G +C+ P + G
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKL 291
Query: 190 SCQDVDGAM-----KCLCPIGTAGKRCEQKI 215
C +G M CLC G G +CE++
Sbjct: 292 RCSCNNGEMCDRFQGCLCSPGWQGLQCEREG 322
Score = 59.7 bits (144), Expect = 2e-09
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC------------GDGSC 191
C+NNG+C + CICPPGF G C E G C
Sbjct: 203 TACMNNGVCHE----DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258
Query: 192 QDVDGAMKCLCPIGTAGKRCEQKI 215
C C G G +C +
Sbjct: 259 LPDPY--GCSCATGWKGLQCNEAC 280
Score = 59.7 bits (144), Expect = 2e-09
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD------VCKN 620
+ C++Y C P Y CSC TG+ G C + + G C N
Sbjct: 243 KERCSGQEGCKSYVFCLPDP-----YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNN 297
Query: 621 GGMCKVTPDSYECLCSLGYAPPNC 644
G MC CLCS G+ C
Sbjct: 298 GEMCD---RFQGCLCSPGWQGLQC 318
Score = 51.2 bits (122), Expect = 8e-07
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 135 CNTCKS----SKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG-EPCYPGAC-GD 188
C+ +C N +C C+C PG+ G +C G P
Sbjct: 280 CHPGFYGPDCKLRCSCNNGEMCDR-----FQGCLCSPGWQGLQCEREGIPRMTPKIVDLP 334
Query: 189 GSCQDVDGAMKCLCPI-GTAGKRCEQ 213
+ G +C G E+
Sbjct: 335 DHIEVNSGKFNPICKASGWPLPTNEE 360
Score = 48.5 bits (115), Expect = 6e-06
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
+ G + + + C G C C C N
Sbjct: 155 HLPHAQPQDAGVYSARYIGGNLFTSAFTRL-IVRRCEAQKWGPECNHL---C---TACMN 207
Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
G+C D+ EC+C G+ C K + +
Sbjct: 208 NGVC--HEDTGECICPPGFMGRTCEKACELHT 237
Score = 32.8 bits (74), Expect = 0.46
Identities = 5/83 (6%), Positives = 11/83 (13%), Gaps = 5/83 (6%)
Query: 133 DSCNT--CKSSKHNNCINNGLCQDAATRIGYTCICP-PGFSGDRCSVLGEPCYPGACGDG 189
C + + IC G+ + G
Sbjct: 316 LQCEREGIPRMTPKIVDLPDHIEV--NSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHP 373
Query: 190 SCQDVDGAMKCLCPIGTAGKRCE 212
+ +
Sbjct: 374 KDFNHTDHFSVAIFTIHRILPPD 396
Score = 32.0 bits (72), Expect = 0.80
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGG 622
+ E P PK + + +N C +G+ E E + +
Sbjct: 319 EREGIPRMTPKIVDLPDHI---EVNSGKFNPICKASGWPLPTNE-EMTLVKPDGTVLHPK 374
Query: 623 MCKVTPDSYECLCSL 637
T + ++
Sbjct: 375 DFNHTDHFSVAIFTI 389
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 56.4 bits (136), Expect = 4e-10
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 288 TPLYSNDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFS 343
PL + P ++ G+ +T C ++P W+ R + LP A
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT-RLHNGKLPSRAMD 59
Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
LT++ ++ SDAG YVC SN + + L V
Sbjct: 60 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 45.2 bits (107), Expect = 4e-06
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 4 IKWSRADG--LPLQRYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNVE 57
+ W+R LP + +L I N + D+G Y C + D L+V+
Sbjct: 43 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT----ATLHVQ 97
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 58.2 bits (140), Expect = 9e-09
Identities = 15/79 (18%), Positives = 19/79 (24%), Gaps = 12/79 (15%)
Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
+ P C P PC Y C G G +C + G CK
Sbjct: 591 QECPGC-PSPCGKYISC--------AECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCK 641
Query: 626 VTPDSYECLCSLGYAPPNC 644
C + Y
Sbjct: 642 ER---DSEGCWVAYTLEQQ 657
Score = 57.0 bits (137), Expect = 2e-08
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQ 192
+ C + + C G C+ C C G+ C P P CG SC
Sbjct: 556 TTEGCLNPRRVECSGRGRCRC------NVCECHSGYQLPLCQEC--PGCPSPCGKYISCA 607
Query: 193 DVDGAMKCLCPIGTAGKRCEQK 214
+ G GK C
Sbjct: 608 EC-----LKFEKGPFGKNCSAA 624
Score = 52.8 bits (126), Expect = 3e-07
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 19/89 (21%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD---- 188
C C + C C G G CS C +
Sbjct: 588 PLCQECPGC-PSPCGKYISC-------AECLKFEKGPFGKNCS---AACPGLQLSNNPVK 636
Query: 189 -GSCQDVDGAMKCLCPIGTAGKRCEQKIK 216
+C++ D C + ++ + +
Sbjct: 637 GRTCKERDS---EGCWVAYTLEQQDGMDR 662
Score = 50.9 bits (121), Expect = 2e-06
Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN----MCMKGDVCKNGGMCKVTPD 629
+ C G C C G+ G C+ E + + C G C
Sbjct: 525 QVCGGPGRGLCFC-----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC----R 575
Query: 630 SYECLCSLGYAPPNC 644
C C GY P C
Sbjct: 576 CNVCECHSGYQLPLC 590
Score = 49.7 bits (118), Expect = 3e-06
Identities = 19/97 (19%), Positives = 25/97 (25%), Gaps = 13/97 (13%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+C + + GLC C C PGF G C C
Sbjct: 518 NCE-RYNGQVCGGPGRGLCFC------GKCRCHPGFEGSACQCERTTEGCLNPRRVECSG 570
Query: 194 ----VDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGS 226
C C G C++ P K+ S
Sbjct: 571 RGRCRCN--VCECHSGYQLPLCQECPGCPSPCGKYIS 605
Score = 45.9 bits (108), Expect = 5e-05
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 18/87 (20%)
Query: 561 DCSDLESSPVCA---PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
C ++ C C G C R C C +GY C+ E C
Sbjct: 550 ACQCERTTEGCLNPRRVECSGRGRC-------RCNVCECHSGYQLPLCQ-ECPGC--PSP 599
Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
C C + G NC
Sbjct: 600 CGKYISC-----AECLKFEKGPFGKNC 621
Score = 45.5 bits (107), Expect = 8e-05
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
+ V V C+ + + LC C C G+ G C +
Sbjct: 413 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL- 471
Query: 188 DGSCQDVDGAM-----------KCLCPIGTAGKRC 211
+GSC+ + ++ +CLC +
Sbjct: 472 EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL 506
Score = 42.8 bits (100), Expect = 5e-04
Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMC--MKGDVCKNGGMCKVTP 628
C G C + G +CE + C G VC G
Sbjct: 479 NNSIICSGLGDCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG--LC 535
Query: 629 DSYECLCSLGYAPPNC 644
+C C G+ C
Sbjct: 536 FCGKCRCHPGFEGSAC 551
Score = 40.1 bits (93), Expect = 0.003
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
+CS + C D+ C Y+ + + + +
Sbjct: 620 NCSA-ACPGLQLSNNPVKGRTCKERDS------EGCWVAYTLEQQDGMDRYLIY---VDE 669
Query: 621 GGMCKVTPDSYECLCSLGY 639
C PD C +L +
Sbjct: 670 SRECVAGPDG--CGENLYF 686
Score = 38.9 bits (90), Expect = 0.007
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 16/129 (12%)
Query: 529 VTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGI------- 581
+ ++ S + + + L + CS+ + C I
Sbjct: 334 IKNAYNKLSSRVFLDHNALP---DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQ 390
Query: 582 --CYPTDTSERGYNCSCLTGYSGDHCEKENNMC--MKGDVCKNGGMC--KVTPDSYECLC 635
T+ + G++ + C D ++ +C K + C C
Sbjct: 391 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRC 450
Query: 636 SLGYAPPNC 644
GY NC
Sbjct: 451 DTGYIGKNC 459
Score = 38.9 bits (90), Expect = 0.007
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 15/82 (18%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD---VCKNGGMCKV- 626
C G C C TGY G +CE + + C+ +
Sbjct: 432 RDRSLCHGKGFLECG-------ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 484
Query: 627 ----TPDSYECLCSLGYAPPNC 644
+CLC P
Sbjct: 485 SGLGDCVCGQCLCHTSDVPGKL 506
Score = 37.4 bits (86), Expect = 0.018
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 133 DSCNTCKSSKHNNCINNG---LCQDAATRIGYTCICPPG------FSGDRCS--VLGEPC 181
+ +C + +C + C+C G C +
Sbjct: 462 QTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER 521
Query: 182 YPGA--CGDGSCQDVDGAMKCLCPIGTAGKRCEQKI 215
Y G G G G KC C G G C+ +
Sbjct: 522 YNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCER 555
Score = 34.7 bits (79), Expect = 0.13
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 22/72 (30%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY---------- 182
+C + S NN + C++ + C ++ ++ G Y
Sbjct: 623 AACPGLQLS--NNPVKGRTCKERDS-----EGCWVAYTLEQQD--GMDRYLIYVDESREC 673
Query: 183 ---PGACGDGSC 191
P CG+
Sbjct: 674 VAGPDGCGENLY 685
Score = 34.3 bits (78), Expect = 0.19
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC---YPGACGDGS 190
C+ + + + + I GF+ + C D S
Sbjct: 377 DCDGVQINVPITF-QVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRS 435
Query: 191 CQDVDGAM---KCLCPIGTAGKRCEQKI 215
G + C C G GK CE +
Sbjct: 436 LCHGKGFLECGICRCDTGYIGKNCECQT 463
Score = 29.7 bits (66), Expect = 4.8
Identities = 9/97 (9%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 555 DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE-------K 607
DS+N++ + + + + + + Y+ C G + + +
Sbjct: 326 DSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVT---YDSFCSNGVTHRNQPRGDCDGVQ 382
Query: 608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
N + + + +LG+
Sbjct: 383 INVPITFQVKVTATECIQ---EQSFVIRALGFTDIVT 416
Score = 28.9 bits (64), Expect = 8.8
Identities = 9/67 (13%), Positives = 13/67 (19%), Gaps = 4/67 (5%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVD 195
K S +N L ++ Y C G + C V
Sbjct: 337 AYNKLSSRVFLDHNALPD--TLKVTYDSFCSNGVTHRNQP--RGDCDGVQINVPITFQVK 392
Query: 196 GAMKCLC 202
Sbjct: 393 VTATECI 399
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 57.0 bits (137), Expect = 1e-08
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 7/112 (6%)
Query: 285 GSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
L + + E + ITL D + W L
Sbjct: 39 DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF--KHSSLNCQPHFD 96
Query: 345 EN-----TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
++ + ++ + AG Y+ + ++ I + + +++ ++P
Sbjct: 97 LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Score = 48.5 bits (115), Expect = 6e-06
Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 8/112 (7%)
Query: 285 GSATPLYSNDAPAFNPVSTK---EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
+ + + N ++ E + + + TW+ + P
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFPCEQ 371
Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+N +++ G Y+ N D L + P +
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-PQVLAEA 422
Score = 47.4 bits (112), Expect = 2e-05
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 16/92 (17%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN-- 346
+ N P + G + + C + TW L G + +
Sbjct: 224 IDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--ENKALEEGNYFEMSTY 280
Query: 347 ----------TLTLQEIKNSDAGMYVCKVSNK 368
+ + +D G Y C S
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312
Score = 34.7 bits (79), Expect = 0.12
Identities = 4/40 (10%), Positives = 8/40 (20%), Gaps = 5/40 (12%)
Query: 4 IKWSRADGLPL----QRYAEGNVLRITNARLQDSGKYKCE 39
W+ + G + G+Y
Sbjct: 358 CTWTF-SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Score = 34.3 bits (78), Expect = 0.19
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 15/56 (26%)
Query: 4 IKWSRADGLPLQR--------------YAEGNVLRITNARLQDSGKYKCEIQGHDS 45
+ W + L+ +++ D+G Y C H S
Sbjct: 260 LTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Score = 33.1 bits (75), Expect = 0.43
Identities = 10/114 (8%), Positives = 24/114 (21%), Gaps = 7/114 (6%)
Query: 285 GSAT---PLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
+ T + + + ++ L C ++ W
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL--CDSQGESCK 184
Query: 342 FSRENTLTLQE--IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
+ +E + C N+ + + P T L
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF 238
Score = 32.4 bits (73), Expect = 0.63
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 16/98 (16%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF---------------SRENTLTLQEI 353
S +C +D +TW K S+ ++ TL
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS 481
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ + C N T +L P F Q
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFP-FIQDG 518
Score = 30.8 bits (69), Expect = 2.1
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 4 IKWSR-ADGLPLQRYAEGN-----VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
W L Q + + + I +G+Y IQ + + V
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE---ATNYTILFTV 135
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 52.0 bits (125), Expect = 1e-08
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
++++ GS + L C Y W K N L + + + G Y
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--NELPLTH---ETKKLYMVPYVDLEHQGTY 65
Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLF 387
C V N + + + ++ D +
Sbjct: 66 WCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 38.9 bits (91), Expect = 5e-04
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 3 YIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERM 59
+ +W + + LPL + + L+ G Y C + + S V++ ++ +
Sbjct: 34 HYQWFK-NELPLTH-ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
V V SC C N G CQ A + C CP GF+G C
Sbjct: 44 HSVPVKSC------SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Score = 50.6 bits (121), Expect = 4e-08
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C+ C N G C + C C G++G CE
Sbjct: 51 CSEPRCFNGGTCQQ-ALYFSDFVCQCPEGFAGKSCE 85
Score = 49.8 bits (119), Expect = 6e-08
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 161 YTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDV--DGAMKCLCPIGTAGKRCE 212
C C G + SV + C C G+CQ C CP G AGK CE
Sbjct: 32 EYCWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 49.4 bits (118), Expect = 1e-07
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 584 PTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK--VTPDSYECLCSLGYAP 641
P S R C C +G + H C + C NGG C+ + + C C G+A
Sbjct: 24 PVLRSNRVEYCWCNSGRAQCHSV-PVKSCSEPR-CFNGGTCQQALYFSDFVCQCPEGFAG 81
Query: 642 PNC 644
+C
Sbjct: 82 KSC 84
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 54.4 bits (131), Expect = 2e-08
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 20/134 (14%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--------EN 346
AP G+++ +TC +W + +G +LP +S +
Sbjct: 19 APKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFR--DGQLLPSSNYSNIKIYNTPSAS 76
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
L + +D G Y C N+ + IL+ D P S + +
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD-TP----SSPSIDQVEPYSS---- 127
Query: 407 FSIELSFKPTDYNG 420
+ ++ F + G
Sbjct: 128 -TAQVQFDEPEATG 140
Score = 34.8 bits (80), Expect = 0.070
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 1 NAYIKWSRADGLPLQRYAEGNV----------LRITNARLQDSGKYKCEIQ---GHDS 45
+A I W R DG L N+ L +T D G Y C G +S
Sbjct: 47 SATISWFR-DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 56.9 bits (137), Expect = 2e-08
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
T+ +G TC +W K +G + E+ L ++ +K D GMY
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKAIG----HSESVLRIESVKKEDKGMY 404
Query: 362 VCKVSNKDMTVEIPSILLVTDSV--PLFTQKPLSYLALP 398
C V N + E + L + P+ Q P
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEP 443
Score = 54.6 bits (131), Expect = 1e-07
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENTLTLQEI 353
K S + L C + W K R VL TL +++
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
D+G Y+C V+N + ++L VT + P
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDP 350
Score = 52.6 bits (126), Expect = 4e-07
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
Query: 294 DAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTL 350
P + K G + +TC W + + LP TL +
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER--DNRALPINRKQKVFPNGTLII 583
Query: 351 QEI-KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+ + +NSD Y C N++ S+ + +P LH
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640
Score = 48.8 bits (116), Expect = 8e-06
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 293 NDAPAFNPVSTKE--APYGSKITLTCN-NDLEAPVEYTWSK-----RSNGHVLPFGAFSR 344
P P + +E A G +TL C+ + P+ W+ + + R
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ LT++ ++ S AG + C N + + L V P + +P
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-PRWILEP 721
Score = 48.4 bits (115), Expect = 8e-06
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 13/118 (11%)
Query: 286 SATPLYSNDAPAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS 343
+ P P F P + + + + C E W + S+G +
Sbjct: 29 ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIR-SDGTAVGDVPGL 87
Query: 344 R----ENTLTLQEIKNSD------AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
R + L + D A +Y C N+ ++ + + +
Sbjct: 88 RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 145
Score = 45.3 bits (107), Expect = 8e-05
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-------ENTLTLQEIKNSD 357
GS + C D + TW K + + E TL + I+ ++
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 358 AGMYVCKVSNKDMTVEIPSILLV 380
G Y+C+ N + I++
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMIS 807
Score = 43.0 bits (101), Expect = 5e-04
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 294 DAPAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP------FGAFSREN 346
D P + G + L C E +W +G + G + N
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL--DGKKIANNDRYQVGQYVTVN 485
Query: 347 -----TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
L + + +D G+Y C +K E + L V
Sbjct: 486 GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Score = 41.1 bits (96), Expect = 0.002
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNVE 57
+ W + DG + +VLRI + + +D G Y+C ++ +S S +KL
Sbjct: 375 VSWMK-DGKAIG--HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR 426
Score = 40.3 bits (94), Expect = 0.003
Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 13/110 (11%)
Query: 295 APAFNP-VSTKEAPYGSKITLTCN---NDLEAPVEYTWSKRSNGHVLPFGAFSR------ 344
A + V+ + G+ + C + +W + P +
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 345 ENTLTLQEIKNSDA-GMYVCKVSNK--DMTVEIPSILLVTDSVPLFTQKP 391
L ++E+ D Y C+ ++ T + + + P+ + P
Sbjct: 198 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP 247
Score = 37.6 bits (87), Expect = 0.020
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 4 IKWSRA-DGLPLQRYAE--------GNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK- 53
+W + +G ++ L I +A ++DSGKY C + + G + V+
Sbjct: 280 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN---NSVGGESVET 336
Query: 54 -LNVE 57
L V
Sbjct: 337 VLTVT 341
Score = 36.5 bits (84), Expect = 0.038
Identities = 5/60 (8%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEI-PSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+ + + ++ + + + P+F ++P + + T A +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Score = 34.9 bits (80), Expect = 0.11
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 4 IKWSRADGLPL-----QRYAEGNVLRITNA-RLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
I W R D L Q+ L I N R D Y C + + + +++ V
Sbjct: 558 IVWER-DNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Score = 34.9 bits (80), Expect = 0.12
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 4 IKWSRADGLPLQRYA----------EGNVLRITNARLQDSGKYKCEIQ 41
+ W +A G Y E L + N + + G Y CE
Sbjct: 746 VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAI 793
Score = 33.0 bits (75), Expect = 0.45
Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 4 IKWSRADGLPLQ---RYAEGNV----------LRITNARLQDSGKYKCE 39
I W DG + RY G L IT+ D G YKC
Sbjct: 461 ISWEL-DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Score = 33.0 bits (75), Expect = 0.51
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 2 AYIKWSRADGLPL---------QRYAEGNVLRITNARLQDSGKYKC 38
I W+ DG + + G+VL I +G + C
Sbjct: 650 LNIDWTL-DGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTC 694
Score = 32.6 bits (74), Expect = 0.63
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 23 LRITNARLQDSGKYKC 38
+ + N RL+ +
Sbjct: 1 MNMPNERLKWLMLFAA 16
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 55.2 bits (133), Expect = 3e-08
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
AP F + E G + +TC W + L L+
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ--GAEDLTPEDDMPVGRNVLELT 262
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
D+ Y C + +E + + V +P K +
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAVAQITVKS-LPKAGTKHHHH 302
Score = 46.4 bits (110), Expect = 2e-05
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 287 ATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA 341
+ P K T+ C A P E TW K + + A
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLC----AASGNPDPEITWFK--DFLPVDPSA 153
Query: 342 FSR------ENTLTLQEIKNSDAGMYVCKVSNK---DMTVEIPSILLVTDSVPLFTQKPL 392
+ L ++ + +D G Y C +N + + V + P F+ P+
Sbjct: 154 SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213
Query: 393 SYLALP 398
S+ +P
Sbjct: 214 SHEIMP 219
Score = 39.4 bits (92), Expect = 0.004
Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 17/112 (15%)
Query: 295 APAFN-PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN------- 346
P F + G + C + TW+K G + F
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNK--KGKKVNSQRFETIEFDESAGA 63
Query: 347 TLTLQEIKN-SDAGMYVCKVSNK------DMTVEIPSILLVTDSVPLFTQKP 391
L +Q ++ D +Y C N + + + P P
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP 115
Score = 39.4 bits (92), Expect = 0.004
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 4 IKWSRADGLPLQ--------RYAEGNVLRITNARLQDSGKYKC 38
I W + D LP+ + L+I ++ D GKY+C
Sbjct: 140 ITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Score = 34.8 bits (80), Expect = 0.11
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 3 YIKWSRADGLPLQ---RYAEGNVLRITNARLQDSGKYKCE 39
Y+KW + L G + ++DS Y C
Sbjct: 236 YVKWMQ-GAEDLTPEDDMPVGR-NVLELTDVKDSANYTCV 273
Score = 31.7 bits (72), Expect = 0.92
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 4 IKWSRADGLPLQ---------RYAEGNVLRITNARLQ-DSGKYKCEIQ---GHDSFRGSD 50
+ W++ G + + G VLRI R D Y+C Q G +
Sbjct: 38 VTWNK-KGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA-- 94
Query: 51 YVKLNVERMMFVDGIGP 67
KL V R + P
Sbjct: 95 --KLTVLREDQLPSGFP 109
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 56.1 bits (135), Expect = 4e-08
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLT 349
LY D P +P T G ++L+C+ P +Y+W +G++ L
Sbjct: 378 LYGPDDPTISPSYT-YYRPGVNLSLSCHAASNPPAQYSWLI--DGNIQQHT-----QELF 429
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLF 387
+ I ++G+Y C+ +N ++ +T S L
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
Score = 53.0 bits (127), Expect = 3e-07
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FS 343
T P ++ + LTC +++ Y W N LP +
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ-NTTYLWWV--NNQSLPVSPRLQLSN 339
Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP-LFTQKP 391
TLTL + +D G Y C + N+ ++L P T P
Sbjct: 340 DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388
Score = 52.3 bits (125), Expect = 5e-07
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQ 351
P+ + ++K + TC + Y W N LP + TLTL
Sbjct: 113 PSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWV--NNQSLPVSPRLQLSNGNRTLTLF 169
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL-VTDSVPLFTQKP 391
+ +D Y C+ N S++L V T P
Sbjct: 170 NVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISP 210
Score = 51.9 bits (124), Expect = 8e-07
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAG 359
G+ + L+C++ +Y+W NG L + +I ++ G
Sbjct: 565 SPPDSSYLSGANLNLSCHSASNPSPQYSWRI--NGIPQQHTQ-----VLFIAKITPNNNG 617
Query: 360 MYVCKVSNKDMTVEIPSILLVT 381
Y C VSN + +T
Sbjct: 618 TYACFVSNLATGRNNSIVKSIT 639
Score = 51.1 bits (122), Expect = 1e-06
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENT 347
LY DAP +P G + L+C+ P +Y+W NG
Sbjct: 198 NVLYGPDAPTISP-LNTSYRSGENLNLSCHAASNPPAQYSWFV--NGTFQQST-----QE 249
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
L + I +++G Y C+ N D + ++ +T
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Score = 49.2 bits (117), Expect = 4e-06
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN-TLTLQEIKN 355
++K + TC + Y W NG LP S N TLTL +
Sbjct: 473 SNNSKPVEDKDAVAFTCEPE-AQNTTYLWWV--NGQSLPVSPRLQLSNGNRTLTLFNVTR 529
Query: 356 SDAGMYVCKVSNKDMTVEIPSILL-VTDSVPLFTQKP 391
+DA YVC + N + L V P
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566
Score = 45.3 bits (107), Expect = 8e-05
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK--------------RSNGHVLPFGAFSR- 344
P + E G ++ L +N + Y+W K P A+S
Sbjct: 8 PFNVAE---GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64
Query: 345 -----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSI-LLVTDSVPLFTQKPLS 393
+L +Q I +D G Y V D+ E + V +P + +
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Score = 41.1 bits (96), Expect = 0.001
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 3 YIKWSRADGLPL----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
Y+ W LP+ Q + L + + D G Y+C IQ S SD V LNV
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
Score = 41.1 bits (96), Expect = 0.002
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 3 YIKWSRADGLPL----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
Y+ W LP+ Q L + N D+ Y C IQ S SD V L+V
Sbjct: 498 YLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 40.3 bits (94), Expect = 0.002
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 1 NAYIKWSRADGLPL------QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKL 54
+A W + L Q L + N D+ YKCE Q S R SD V L
Sbjct: 139 DATYLWWV-NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL 197
Query: 55 NV 56
NV
Sbjct: 198 NV 199
Score = 38.8 bits (90), Expect = 0.008
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
W +G+P Q VL I ++G Y C +
Sbjct: 591 YSWRI-NGIPQQ---HTQVLFIAKITPNNNGTYACFVS 624
Score = 36.9 bits (85), Expect = 0.030
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNV 56
W +G Q L I N + +SG Y C+ + + V
Sbjct: 235 YSWFV-NGTFQQ---STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV 284
Score = 36.5 bits (84), Expect = 0.040
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
W DG Q L I+N ++SG Y C+
Sbjct: 413 YSWLI-DGNIQQ---HTQELFISNITEKNSGLYTCQ 444
Score = 30.7 bits (69), Expect = 2.5
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I N D+G Y + D + V
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV 106
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 55.9 bits (134), Expect = 4e-08
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)
Query: 285 GSATPLYSNDAPAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKR-----SNGHVLP 338
P S D P + + + +TC + +++ W V
Sbjct: 21 SVGLPSVSLDLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTE 78
Query: 339 FGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
TLT+ ++ +D G Y C D+ I + S + +
Sbjct: 79 CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD 131
Score = 55.5 bits (133), Expect = 6e-08
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLTLQEIKNSDA 358
S EA G ++ + P E W K NG L + LT+ E+ D
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYK--NGIPLESNHTIKAGHVLTIMEVSERDT 393
Query: 359 GMYVCKVSNKDMTVEIPSILLVTDSV-PLFTQKPLS 393
G Y ++N + ++ + V P +K L
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
Score = 54.8 bits (131), Expect = 1e-07
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSR 344
+ + V + + C + ++ +P G +
Sbjct: 122 RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 181
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLF 387
+ T+ S AGM C+ D + + ++V ++
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224
Score = 50.5 bits (120), Expect = 2e-06
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 19/135 (14%)
Query: 298 FNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN----------- 346
+P E G K+ L C E V ++ +
Sbjct: 228 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 287
Query: 347 ---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDA 403
TLT+ + SD G+Y C S+ MT + + + V + P + +L +A
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGS----GMESLVEA 342
Query: 404 HLHFSIELSFKPTDY 418
+ + + K Y
Sbjct: 343 TVGERVRIPAKYLGY 357
Score = 47.1 bits (111), Expect = 2e-05
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 290 LYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF----SR 344
+ AP + + G I ++C P + W K + L +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK--DNETLVEDSGIVLKDG 718
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
LT++ ++ D G+Y C+ + ++ + + T
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQEKTNLE 764
Score = 45.9 bits (108), Expect = 5e-05
Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 27/129 (20%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------------------- 330
+ P + ++L C D TW K
Sbjct: 545 FHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604
Query: 331 -----RSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV- 384
+ + + + L+ D G YVC ++ + +T
Sbjct: 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664
Query: 385 --PLFTQKP 391
P T
Sbjct: 665 VAPTITGNL 673
Score = 41.7 bits (97), Expect = 0.001
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 4 IKWSRADGLPL---QRYAEGNVLRITNARLQDSGKYKC 38
IKW + +G+PL G+VL I +D+G Y
Sbjct: 362 IKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398
Score = 35.1 bits (80), Expect = 0.10
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 4 IKWSRADGLPLQ-----RYAEGN-VLRITNARLQDSGKYKCE 39
I W + D L +GN L I R +D G Y C+
Sbjct: 698 IMWFK-DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Score = 34.0 bits (77), Expect = 0.26
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
N W + + ++ + NA LQD G Y C Q
Sbjct: 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
Score = 32.4 bits (73), Expect = 0.67
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 15 QRYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNVERMMFV 62
+ + L I D G Y C G + + S + V FV
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS--TFVRVHEKPFV 330
Score = 32.4 bits (73), Expect = 0.69
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 22 VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFV 62
L I D+G YKC + YV + R F+
Sbjct: 87 TLTIPKVIGNDTGAYKCFYR-ETDLASVIYVYVQDYRSPFI 126
Score = 32.4 bits (73), Expect = 0.76
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
TL + + +Y C+ NK E VT P T +P
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-PEITLQP 557
Score = 30.5 bits (68), Expect = 2.9
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 16 RYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNVERMMFVDGIGPFS 69
+ I + + +G CE + +S++ Y+ + V ++ + P
Sbjct: 178 SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232
Score = 30.1 bits (67), Expect = 4.1
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+++C + +V +PS+ L +P + +
Sbjct: 7 LAVALWLCVETRA-ASVGLPSVSL---DLPRLSIQK 38
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 55.6 bits (134), Expect = 5e-08
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN------TLTLQEI 353
P+ EA G ITL C D + W K L + +L + ++
Sbjct: 11 PLEHVEAAIGEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKV 68
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKP 391
+SD G Y CK N V ++L++ + P F +K
Sbjct: 69 DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL 108
Score = 52.1 bits (125), Expect = 5e-07
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------EN 346
P F ++ C ++ W K + + + R
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK--DETEIQESSKFRMSFVESVA 347
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L + + D+G Y C+ N + + L V P+F +KP
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKP 391
Score = 50.6 bits (121), Expect = 2e-06
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 295 APAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------AFSRENT 347
P F E G+ + L C P + +W K + L G + + +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--DKRELRSGKKYKIMSENFLTS 441
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ + + ++D G Y CK SN + + + P F +K
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-PRFVKKL 484
Score = 49.0 bits (117), Expect = 5e-06
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 295 APAFN-PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------ENT 347
P F+ + + G T C+ AP++ TW+K + + G + T
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK--DNREIRPGGNYKMTLVENTAT 254
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
LT+ ++ DAG Y C SN + L V P F +K
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKL 297
Score = 48.3 bits (115), Expect = 8e-06
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 11/117 (9%)
Query: 291 YSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----- 344
P+F + G + C + P++ +W K +G +L A +
Sbjct: 97 ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK--DGELLKDDANLQTSFIH 154
Query: 345 -ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD--SVPLFTQKPLSYLALP 398
TL + + S G Y C SN T + L +++ P F KP+S
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Score = 47.9 bits (114), Expect = 1e-05
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE------ 345
P F +S G ++ L + P+ W K + + + +
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK--DKGEIVRESDNIWISYSEN 532
Query: 346 -NTLTLQEIKNSDAGMYVCKVSNK 368
TL + ++AG Y C++ N+
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNE 556
Score = 37.1 bits (86), Expect = 0.026
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 4 IKWSRADGLPL--------QRYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYV 52
I W++ D + L + D+G+Y C + G DS
Sbjct: 229 ITWAK-DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS----A 283
Query: 53 KLNVE 57
+L V+
Sbjct: 284 QLGVQ 288
Score = 36.3 bits (84), Expect = 0.046
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ-------RYAEGN-VLRITNARLQDSGKYKCE 39
+ W + D +Q + E VL + N ++DSG Y CE
Sbjct: 323 VLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Score = 35.9 bits (83), Expect = 0.051
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+ W + D L+ +Y +E + + I N D G+Y+C+
Sbjct: 416 VSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458
Score = 34.0 bits (78), Expect = 0.19
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 4 IKWSRADGLPL------QRYAEGNV--LRITNARLQDSGKYKCEIQ 41
+ W + G + N+ L+ + A ++GKY C+I+
Sbjct: 509 VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIK 554
Score = 33.6 bits (77), Expect = 0.26
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 4 IKWSRADGLPLQ--------RYAEGNVLRITNARLQDSGKYKC 38
+ W + DG L+ L+I G+Y C
Sbjct: 133 VSWYK-DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Score = 32.9 bits (75), Expect = 0.44
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ-------RYAEGN-VLRITNARLQDSGKYKCE 39
I W + + L+ ++ L I D G+Y C+
Sbjct: 37 IAWYK-EHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 49.0 bits (117), Expect = 6e-08
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+S C SS C+N G+C + YTC C G+SGDRC
Sbjct: 1 NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 41.7 bits (98), Expect = 2e-05
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
P C N G+C ++ + Y C+C+ GYSGD C+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDS-YTCNCVIGYSGDRCQ 43
Score = 31.3 bits (71), Expect = 0.094
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 618 CKNGGMCKVTP--DSYECLCSLGYAPPNC 644
C NGG+C DSY C C +GY+ C
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 48.2 bits (116), Expect = 6e-08
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C PC N G C D Y C C G+ G +CE
Sbjct: 6 CESNPCLNGGSC--KD-DINSYECWCPFGFEGKNCE 38
Score = 45.5 bits (109), Expect = 5e-07
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+ C+S N C+N G C+D Y C CP GF G C
Sbjct: 4 DQCES---NPCLNGGSCKDDIN--SYECWCPFGFEGKNC 37
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
C NGG CK +SYEC C G+ NC
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 32.1 bits (74), Expect = 0.038
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 180 PCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
PC G GSC+D + +C CP G GK CE
Sbjct: 10 PCLNG----GSCKDDINSYECWCPFGFEGKNCE 38
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.3 bits (125), Expect = 7e-08
Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 297 AFNPVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
A V T GSKI LTC N+ + W K G VL A +
Sbjct: 1 AAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK--GGVVLKEDALP-GQKTEFKVDS 57
Query: 355 NSDAGMYVCKVSN 367
+ G Y C
Sbjct: 58 DDQWGEYSCVFLP 70
Score = 41.9 bits (98), Expect = 3e-04
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 20/136 (14%)
Query: 251 RDGIILYSGQSDDGLGDFISLAIREKHM-----EFRFDTGSATPLYSNDAPAFNPVSTKE 305
+ G++L +F + F + + + P V + E
Sbjct: 36 KGGVVLKEDALPGQKTEFKV--DSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSE 93
Query: 306 -APYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFS----------RENTLTLQEI 353
G L C + ++ W K ++ S + L ++ +
Sbjct: 94 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153
Query: 354 K-NSDAGMYVCKVSNK 368
+D G Y C ++
Sbjct: 154 NMEADPGQYRCNGTSS 169
Score = 33.8 bits (77), Expect = 0.12
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 4 IKWSRADGLPLQ-RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
+W + G+ L+ G G+Y C + +
Sbjct: 32 HRWLK-GGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLH 81
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 53.7 bits (129), Expect = 8e-08
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 302 STKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLP-------FGAFSRENTLTLQE 352
S E G C D + + +W + + P +TLT+
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
DAG+Y C V+ +D T ++ + +F P
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Score = 46.0 bits (109), Expect = 3e-05
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 4 IKWSRADGLPL----QRYA------EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
I W +G L QR + + + L I NA + D+G YKC + D + V
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Query: 54 LNV 56
+ +
Sbjct: 95 VKI 97
Score = 42.6 bits (100), Expect = 3e-04
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 295 APAFNPVST-KEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
F T +E G + C+ P W G + R N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH--KGRDVILKKDVRFIVLSNNYL 157
Query: 349 TLQEIKNSDAGMYVCKVSNK-DMTVEIPSILLVTDSVPLFTQKP 391
++ IK +D G Y C+ + I ++ + P +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ 201
Score = 41.0 bits (96), Expect = 0.001
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 293 NDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN--- 346
N P + A G +TL C+ D +W+K +G + E
Sbjct: 192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK--DGEPIENEEEDDEKHIF 249
Query: 347 -----TLTLQEIKNSDAGMYVCKVSNK 368
LT++ + +D YVC NK
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENK 276
Score = 37.9 bits (88), Expect = 0.010
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-----RYA--EGNVLRITNARLQDSGKYKCE 39
I W G + R+ N L+I + D G Y+CE
Sbjct: 132 IIWKH-KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Score = 34.5 bits (79), Expect = 0.10
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 4 IKWSRADGLPLQR----------YAEGNVLRITNARLQDSGKYKC 38
+ W++ DG P++ + + L I N D +Y C
Sbjct: 228 MSWTK-DGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 52.1 bits (125), Expect = 9e-08
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 302 STKEAPYGSKITLTCN-NDLEAPVEYTWSKR-------SNGHVLPFGAFSRENTLTLQEI 353
S E G C + +W + + +TLT+
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
DAG+Y C V+ +D T ++ + +F P
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Score = 46.4 bits (110), Expect = 7e-06
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
F N + +E G + C+ P W G + R N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH--KGRDVILKKDVRFIVLSNNYL 157
Query: 349 TLQEIKNSDAGMYVCKVSN 367
++ IK +D G Y C+
Sbjct: 158 QIRGIKKTDEGTYRCEGRI 176
Score = 40.6 bits (95), Expect = 7e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 4 IKWSRADGLPL----------QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
I W +G L + + L I NA + D+G YKC + D + V
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Query: 54 LNV 56
+ +
Sbjct: 95 VKI 97
Score = 37.1 bits (86), Expect = 0.009
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-----RYA--EGNVLRITNARLQDSGKYKCE 39
I W G + R+ N L+I + D G Y+CE
Sbjct: 132 IIWKH-KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 53.2 bits (127), Expect = 1e-07
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 300 PVSTKEAPYGSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
++ TLTC+ P Y WS LP A ++ L ++ +
Sbjct: 223 GYDNNWYLGQNEATLTCDARSNPEPTGYNWST--TMGPLPPFAVAQGAQLLIRPVDKPIN 280
Query: 359 GMYVCKVSNKDMTVEIPSILLV 380
+C V+N + + V
Sbjct: 281 TTLICNVTNALGARQAELTVQV 302
Score = 39.7 bits (92), Expect = 0.002
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 4 IKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCE 39
WS G LP A+G L I + C
Sbjct: 250 YNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICN 286
Score = 36.2 bits (83), Expect = 0.031
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 27/117 (23%)
Query: 302 STKEAPYGSKITLTC-----NNDLEAPVEYTWSK----------------------RSNG 334
+ G +TL C N ++ + TW++ R
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 335 HVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
GA R +L + ++ D G Y C I L + P T +
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV 124
Score = 35.8 bits (82), Expect = 0.040
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
LR+ R++D G Y C S + L V
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 33.9 bits (77), Expect = 0.16
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPF---------GAFSRENTLTLQEIKNSDA 358
C P + TW + +P G + + L D
Sbjct: 132 EPVPMARCVSTGGRPPAQITWHS--DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDG 189
Query: 359 GMYVCKVSNK--DMTVEIPSILLVTDSVPLFTQKP 391
CKV ++ + + L V +
Sbjct: 190 KNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY 224
Score = 29.7 bits (66), Expect = 3.5
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 2 AYIKWSRADGLPLQ-----------RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSD 50
A I W D + ++ + + D C+++ H+SF
Sbjct: 148 AQITWHS-DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVE-HESFEKPQ 205
Query: 51 Y--VKLNV 56
V L V
Sbjct: 206 LLTVNLTV 213
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 51.8 bits (124), Expect = 1e-07
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 294 DAPAF--NPVSTKEAPYGSKITLTCNNDLEA-PVEYTWSKRSNGHVLPFGAFSREN---- 346
+ F NP G TL C ++ P E W + +G +L ++
Sbjct: 1 EESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLR--DGQILELADSTQTQVPLG 57
Query: 347 -----------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L + ++ SD G Y C V T + + +P F ++P
Sbjct: 58 EDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP 113
Score = 45.3 bits (107), Expect = 2e-05
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA-----PVEYTWSKRSNGHVLPFGAFSRENTL 348
P F + + L+C +A PV+ W + + L A
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSC----QAQGPPEPVDLLWLQ--DAVPLA-TAPGHGPQR 158
Query: 349 TLQEIKNSDAGMYVCKVSNK 368
+L + + C+ N
Sbjct: 159 SLHVPGLNKTSSFSCEAHNA 178
Score = 37.6 bits (87), Expect = 0.007
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 4 IKWSRADGLPLQ-----------------RYAEGNVLRITNARLQDSGKYKCEIQGHDSF 46
+ W R DG L+ + + LRIT+ +L D+G+Y+C +
Sbjct: 35 VHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT 93
Query: 47 RGSDYVKLNVE 57
S + +E
Sbjct: 94 FVSQPGYVGLE 104
Score = 34.1 bits (78), Expect = 0.098
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 4 IKWSRADGLPLQRY-AEGNVLRITNARLQDSGKYKCE 39
+ W + D +PL G + L + + CE
Sbjct: 139 LLWLQ-DAVPLATAPGHGPQRSLHVPGLNKTSSFSCE 174
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 53.7 bits (129), Expect = 1e-07
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------- 344
AP F + + + G+ I ++C+ P W + + VLP +
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR--DKLVLPAKNTTNLKTYSTG 155
Query: 345 -ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDA 403
+ L + ++D G Y C +N T IL + D VP P + +
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VP---SSPYG----VKIIEL 207
Query: 404 HLHFSIELSFKPTDYNG 420
+ ++SF D +G
Sbjct: 208 SQT-TAKVSFNKPDSHG 223
Score = 49.8 bits (119), Expect = 2e-06
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN--------- 346
P + + ++TL C+ + E E TW + +G G S +
Sbjct: 2 PHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 347 --TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+L ++++K SD+G Y C+ +++ + L + + P F
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-PKFISNQ 107
Score = 35.2 bits (81), Expect = 0.090
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 1 NAYIKWSRADGLPLQRYAEGNV----------LRITNARLQDSGKYKCEIQ 41
A I W R D L L N+ L I D G+Y C
Sbjct: 129 PASIHWRR-DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Score = 30.9 bits (70), Expect = 1.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 23 LRITNARLQDSGKYKCE 39
L I + +L DSG+Y CE
Sbjct: 65 LHIKDVKLSDSGRYDCE 81
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 53.9 bits (129), Expect = 1e-07
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
Query: 285 GSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
L + + E + ITL D + W + + +
Sbjct: 39 DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ 98
Query: 345 EN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
++ + ++ + AG Y+ + ++ I + + +++ ++P
Sbjct: 99 NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Score = 47.4 bits (112), Expect = 1e-05
Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 7/104 (6%)
Query: 285 GSATPLYSNDAPAFNPV---STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
+ + + N E + + + TW+ + P
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFPCEQ 371
Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
+N +++ G Y+ N D L +
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 40.8 bits (95), Expect = 0.002
Identities = 12/86 (13%), Positives = 19/86 (22%), Gaps = 15/86 (17%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAP-VEYTWSKRSNGHVLPFGAF------------ 342
+ G + + C TW L G +
Sbjct: 229 TPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--ENKALEEGNYFEMSTYSTNRTM 286
Query: 343 SRENTLTLQEIKNSDAGMYVCKVSNK 368
R + + +D G Y C S
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKH 312
Score = 35.0 bits (80), Expect = 0.11
Identities = 9/112 (8%), Positives = 22/112 (19%), Gaps = 9/112 (8%)
Query: 285 GSAT---PLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
+ T + + + ++ L C ++ W
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL--CDSQGESCK 184
Query: 342 FSRENTLTLQE--IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ +E + C N+ + L D
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNE--LGRECTRLFTIDLNQTPQTTL 234
Score = 32.7 bits (74), Expect = 0.54
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 4 IKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCE 39
W+ + P ++ G + G+Y
Sbjct: 358 CTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Score = 32.0 bits (72), Expect = 0.93
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 4 IKWSRAD-GLPLQRYAEGNV-----LRITNARLQDSGKYKCEIQ 41
W L Q + + + I +G+Y IQ
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ 123
Score = 31.2 bits (70), Expect = 1.6
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 15/50 (30%)
Query: 4 IKWSRADGLPLQ--------------RYAEGNVLRITNARLQDSGKYKCE 39
+ W + L+ +++ D+G Y C
Sbjct: 260 LTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 53.8 bits (129), Expect = 1e-07
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS-RENTLTLQ 351
AP + P G +T+ C WS N L G + ++ L ++
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH--NAKPLSGGRATVTDSGLVIK 365
Query: 352 EIKNSDAGMYVCKVSNK 368
+KN D G Y C+ +N+
Sbjct: 366 GVKNGDKGYYGCRATNE 382
Score = 53.0 bits (127), Expect = 2e-07
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 14/115 (12%)
Query: 302 STKEAPYGSKITLTCNNDLEA----PVEYTWSK------RSNGHVLPFGAFSRENTLTLQ 351
A G + C + K + + + L +
Sbjct: 220 KDMMAKAGDVTMIYC----MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK 275
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
D G+Y C+V N + S+ L S P + QKP + + D +
Sbjct: 276 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Score = 51.8 bits (124), Expect = 6e-07
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 11/110 (10%)
Query: 290 LYSNDAPAF--NPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR-- 344
L + P P + L C + V+Y+W K +G + +
Sbjct: 1 LPVDKYPVLKDQPAEV-LFRENNPTVLECIIEGNDQGVKYSWKK--DGKSYNWQEHNAAL 57
Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
E +L + SD G Y C I + K
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107
Score = 37.6 bits (87), Expect = 0.014
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 4 IKWSRADGLPL--QRYA-EGNVLRITNARLQDSGKYKCE 39
+ WS + PL R + L I + D G Y C
Sbjct: 341 VVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCR 378
Score = 37.2 bits (86), Expect = 0.019
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 11/46 (23%)
Query: 4 IKWSRADGLPLQRYAE----------GNVLRITNARLQDSGKYKCE 39
+ + +G + E G L +D G Y CE
Sbjct: 244 PNYFK-NGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Score = 33.3 bits (76), Expect = 0.30
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 4 IKWSRADGLPL------QRYAEGN-VLRITNARLQDSGKYKC 38
W + DG + L + D G Y+C
Sbjct: 39 YSWKK-DGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79
Score = 32.6 bits (74), Expect = 0.53
Identities = 21/132 (15%), Positives = 30/132 (22%), Gaps = 16/132 (12%)
Query: 296 PAF-NPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKR-----SNGHVLPFG---AFSRE 345
A K G L C + TW KR N V F +
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 346 NTLTLQEIKN---SDAGMYVCKVSN---KDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
L + SD YVC N + V + + + +
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Query: 400 LTDAHLHFSIEL 411
A +
Sbjct: 221 DMMAKAGDVTMI 232
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 51.3 bits (123), Expect = 2e-07
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP-----FGAFSRENTL 348
AP P+ T +A T C + E +W++ N ++ + L
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTR--NKILIKLFDTRYSIRENGQLL 64
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLAL 397
T+ +++SD G+Y C +N L P T+ P++ +
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII 113
Score = 44.7 bits (106), Expect = 3e-05
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTL 350
P P + G K L C +W K L + +L +
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK--GDSALRENSRIAVLESGSLRI 157
Query: 351 QEIKNSDAGMYVCKVSNK 368
++ DAG Y C N
Sbjct: 158 HNVQKEDAGQYRCVAKNS 175
Score = 40.5 bits (95), Expect = 9e-04
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 4 IKWSRADGLPLQ---RYA--EGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLN 55
+ W + L+ R A E LRI N + +D+G+Y+C G S VKL
Sbjct: 132 VSWIK-GDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY---SKLVKLE 187
Query: 56 VE 57
VE
Sbjct: 188 VE 189
Score = 40.1 bits (94), Expect = 0.001
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPL-------QRYAEGNVLRITNARLQDSGKYKCE 39
I W+R + + + G +L I + D G Y C
Sbjct: 39 ISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCT 80
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 48.3 bits (116), Expect = 2e-07
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD--HCEKENNMCMKGDVCKNGGMCKVTP 628
C +G C TD S Y C C GY C + + C G+ C NG CK
Sbjct: 8 CKEPDVCKHGQCINTDGS---YRCECPFGYILAGNECV-DTDECSVGNPCGNG-TCKNVI 62
Query: 629 DSYECLCSLGY 639
+EC C G+
Sbjct: 63 GGFECTCEEGF 73
Score = 44.1 bits (105), Expect = 7e-06
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 23/91 (25%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC-------YPG 184
+D C KH CIN T Y C CP G+ G C
Sbjct: 5 MDECKEPDVCKHGQCIN--------TDGSYRCECPFGYILA-----GNECVDTDECSVGN 51
Query: 185 ACGDGSCQDVDGAMKCLCPIG---TAGKRCE 212
CG+G+C++V G +C C G CE
Sbjct: 52 PCGNGTCKNVIGGFECTCEEGFEPGPMMTCE 82
Score = 27.2 bits (61), Expect = 5.6
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD---HCE 606
C+ G C + C+C G+ CE
Sbjct: 47 CSVGNPCGNGTCKNVIGG---FECTCEEGFEPGPMMTCE 82
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 52.9 bits (126), Expect = 3e-07
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
C CK + + G G C P S +V G G+C
Sbjct: 324 PDCGKCKKNYQGRPWSPGSYLPIPK--GAANACIPSISSIGTNVCDNELLHCQNG-GTCH 380
Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
++CLCP G CE+
Sbjct: 381 ---NNVRCLCPAAYTGILCEK 398
Score = 45.6 bits (107), Expect = 5e-05
Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 4/76 (5%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTP 628
V C + D S C C +G C K +G G P
Sbjct: 292 KVRGRCKCNLHATVCVYDNS--KLTCECEHNTTGPDCGKCKKNY-QGRPWSPGS-YLPIP 347
Query: 629 DSYECLCSLGYAPPNC 644
C +
Sbjct: 348 KGAANACIPSISSIGT 363
Score = 45.6 bits (107), Expect = 5e-05
Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
S + CQN G C C C Y+G CEK C+
Sbjct: 358 ISSIGTNVCDNELLHCQNGGTC------HNNVRCLCPAAYTGILCEK----LR----CEE 403
Query: 621 GGMCKVTPDSYECLCSLGYAPPNC 644
G C DS + G +
Sbjct: 404 AGSC--GSDSGQGAPPHGTHHHHH 425
Score = 44.4 bits (104), Expect = 1e-04
Identities = 11/82 (13%), Positives = 17/82 (20%), Gaps = 7/82 (8%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
+ CK C + TC C +G C + GS
Sbjct: 291 IKVRGRCK------CNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343
Query: 192 QDVDGAMKCLCPIGTAGKRCEQ 213
+ C +
Sbjct: 344 LPIPKGAANACIPSISSIGTNV 365
Score = 44.4 bits (104), Expect = 1e-04
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 15/83 (18%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG 621
C +P +C+ S +N C+NG
Sbjct: 329 CKKNYQGRPWSPGSYLPIPKGAA---------NACIPSISSIGTNVCDNEL---LHCQNG 376
Query: 622 GMCKVTPDSYECLCSLGYAPPNC 644
G C ++ CLC Y C
Sbjct: 377 GTCH---NNVRCLCPAAYTGILC 396
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 52.4 bits (125), Expect = 3e-07
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 300 PVSTKEAPYGSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQE-IKNSD 357
+ LTC D EY W+ LP G ++ TL + I S
Sbjct: 238 GFDGNWYLQRMDVKLTCKADANPPATEYHWTT--LNGSLPKGVEAQNRTLFFKGPINYSL 295
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
AG Y+C+ +N T + +T++
Sbjct: 296 AGTYICEATNPIGTRSGQVEVNITEA-AALEHHH 328
Score = 42.8 bits (100), Expect = 3e-04
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 8/114 (7%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVL------PFGAFSRENTLTLQE 352
+ K+ + TC + P +W R G P G + + L
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+ + C V+ + L V P T + D L
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQYE-PEVTIEGFDGNWYLQRMDVKLT 253
Score = 39.3 bits (91), Expect = 0.004
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 26/118 (22%)
Query: 302 STKEAPYGSKITLTCN----NDLEAPVEYTWSKRSNGHVLPFGAFS-------------- 343
+ G+ + L C+ + TW K +NG ++
Sbjct: 22 DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRER 81
Query: 344 --------RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
+ T+ L ++ D G+Y+C+ + + L + P +
Sbjct: 82 VEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139
Score = 38.6 bits (89), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+R++ L+D G Y CE + + L V
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
Score = 32.8 bits (74), Expect = 0.44
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 4 IKWSRADG-LPLQRYAEGNVLRITN-ARLQDSGKYKCEIQ---GHDSFRGSDYVKLNVE 57
W+ +G LP A+ L +G Y CE G S V++N+
Sbjct: 265 YHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG----TRSGQVEVNIT 319
Score = 32.0 bits (72), Expect = 0.72
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 2 AYIKWSRADGLPLQ---------RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYV 52
+ + W + + R+ +R C + + R + +
Sbjct: 166 SVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN-YHMDRFKESL 224
Query: 53 KLNV 56
LNV
Sbjct: 225 TLNV 228
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 50.7 bits (121), Expect = 4e-07
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
++++ GS + L C Y W K N L + + + G Y
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--NELPLTH---ETKKLYMVPYVDLEHQGTY 180
Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
C V N + + + ++ D +
Sbjct: 181 WCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
Score = 49.1 bits (117), Expect = 1e-06
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
+K G + L C V+Y W K +P G + L + DAG Y
Sbjct: 26 ESKAVLAGQFVKLCCRATGHPFVQYQWFK--MNKEIPNG---NTSELIFNAVHVKDAGFY 80
Query: 362 VCKVSN 367
VC+V+N
Sbjct: 81 VCRVNN 86
Score = 44.5 bits (105), Expect = 4e-05
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+W + + + L ++D+G Y C + + +F S + +L+V
Sbjct: 50 YQWFK-MNKEIPN-GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Score = 42.2 bits (99), Expect = 3e-04
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
+W + + LPL + + L+ G Y C +
Sbjct: 150 YQWFK-NELPLTH-ETKKLYMVPYVDLEHQGTYWCHVY 185
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 50.2 bits (120), Expect = 4e-07
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 294 DAPAFN-PVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLT 349
+ P +TL C + + W+K NG L + N
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK--NGVELTATRKNASNMEYR 59
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ + + D+G Y C + + + P T
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKA--NATIEVKAAPDITGHK 99
Score = 41.4 bits (97), Expect = 4e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 4 IKWSRADGLPLQ---RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
W++ +G+ L + A RI R +DSG+Y C + + + + V+
Sbjct: 37 SYWTK-NGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKAN--ATIEVK 90
Score = 36.8 bits (85), Expect = 0.013
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 38/158 (24%)
Query: 251 RDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG--------------SATPLYSNDAP 296
++G+ L + + + I + E D+G +AT + AP
Sbjct: 41 KNGVELTATRKNASNM---EYRINKPRAE---DSGEYHCVYHFVSAPKANAT-IEVKAAP 93
Query: 297 AF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP---------FGAFSREN 346
++ G + C + E+ W K + + F ++EN
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK--KENGVFEEISNSSGRFFIINKEN 151
Query: 347 TLTLQEIKN----SDAGMYVCKVSNKDMTVEIPSILLV 380
L I N D G Y C +N + + ++L V
Sbjct: 152 YTELN-IVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 52.2 bits (125), Expect = 4e-07
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 302 STKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSD 357
+ A G +TL C A PV + W K S E L +Q + D
Sbjct: 215 ADTYALTGQMVTLEC----FAFGNPVPQIKWRK--LDGSQTSKWLSSEPLLHIQNVDFED 268
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
G Y C+ N +++ + P +
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIH-AQPDWLDVI 301
Score = 47.5 bits (113), Expect = 1e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTLQ 351
P + + ++ EA GS + +C + W + +G L L
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR--DGQPLASQNRIEVSGGELRFS 351
Query: 352 EIKNSDAGMYVCKVSNK 368
++ D+GMY C NK
Sbjct: 352 KLVLEDSGMYQCVAENK 368
Score = 47.2 bits (112), Expect = 1e-05
Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 295 APAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----EN 346
P F E K+TLTC P Y W NG L G SR
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM--NGTELKMGPDSRYRLVAG 61
Query: 347 TLT-LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
L +K DAG Y C +N TV L + F+ +
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERD 109
Score = 44.5 bits (105), Expect = 1e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 4 IKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNVE 57
IKW + DG + + +L I N +D G Y+CE I+G D+++ ++ +
Sbjct: 239 IKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ----GRIIIH 292
Score = 44.1 bits (104), Expect = 1e-04
Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 13/123 (10%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR------ENTLTLQE 352
+ G + TC+ + Y W N A R L + +
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLL--NEFPNFIPADGRRFVSQTTGNLYIAK 164
Query: 353 IKNSDAGMYVCKVSNK----DMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
+ SD G Y C ++ +V L + P P T A
Sbjct: 165 TEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 409 IEL 411
+ L
Sbjct: 225 VTL 227
Score = 37.9 bits (88), Expect = 0.012
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 4 IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCE 39
++W R DG PL R G LR + L+DSG Y+C
Sbjct: 326 VRWLR-DGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCV 364
Score = 31.0 bits (70), Expect = 1.5
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 9/43 (20%)
Query: 4 IKWSRADGLPLQ------RYA--EGNVLRITNARLQDSGKYKC 38
+W + P R+ L I D G Y C
Sbjct: 134 YRWLL-NEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175
Score = 30.6 bits (69), Expect = 2.5
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 4 IKWSRADGLPL-------QRYAEGNVLRITNARLQDSGKYKC 38
+W +G L R G+++ + +D+G Y+C
Sbjct: 39 YRWKM-NGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 51.5 bits (123), Expect = 5e-07
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLP------FGAFSRENTLTLQEIKNSDAGMY 361
G + C+ + ++ + + +P + + TL L ++ AG Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
C SN V +S + +
Sbjct: 261 SCVASNVQGKHSTSMFFRVVES-AGNSHHHHHH 292
Score = 50.0 bits (119), Expect = 1e-06
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 296 PAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
P P V G+ +TL C W + H + + + L+
Sbjct: 5 PVIEPSVPELVVKPGATVTLRC----VGNGSVEWDGPPSPHWTLY-SDGSSSILSTNNAT 59
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ G Y C + L V D +
Sbjct: 60 FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLA 96
Score = 48.8 bits (116), Expect = 4e-06
Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGMYVCK 364
L C D + R G L FS + T+ K + Y C
Sbjct: 104 DQDALLPCLLTDPVLEAGVSL-VRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162
Query: 365 VSNKDMTVEIPSILL----VTDSVPLFTQKPLSYLAL 397
V SI L V P T P + +
Sbjct: 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199
Score = 41.9 bits (98), Expect = 6e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 4 IKWSRADGLPL-----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
+ R G PL ++ + I A+ S Y+C S ++L V+
Sbjct: 122 VSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
Score = 40.3 bits (94), Expect = 0.002
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 4 IKWSRADGLPLQRYAEGN--VLRITNARLQDSGKYKCEIQG-HDSFRGSDYVKLNVERMM 60
++W Y++G+ +L NA Q++G Y+C G + ++ +
Sbjct: 32 VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
Query: 61 FV 62
+
Sbjct: 92 WN 93
Score = 31.1 bits (70), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 16 RYAEGNVLRITNARLQDSGKYKCE 39
RY + L + Q +G Y C
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCV 263
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.6 bits (120), Expect = 5e-07
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 296 PAFNPVSTKEAPYGSKITLTCN--NDLEAPVEYTWS------------KRSNGHVLPFGA 341
+P E G K+ L C +L +++ W R
Sbjct: 107 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 166
Query: 342 FSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
+TLT+ + SD G+Y C S+ MT + + + V +
Sbjct: 167 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207
Score = 38.6 bits (89), Expect = 0.004
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLP----FGAFSRENTLTLQEIKNSDAGMYVC 363
+ + C + V + R ++ + T+ S AGM C
Sbjct: 24 NKTVVIPCLGSISNLNV--SLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 364 KVSNKDMTVEIPSILLVTDSVPLFT 388
+ D + + ++V ++
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYD 106
Score = 32.5 bits (73), Expect = 0.40
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 15 QRYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVK 53
+ + L I D G Y C G + + S +V+
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 51.7 bits (123), Expect = 5e-07
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
G +TLT + + ++ TL++ +++ D+G + C V
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQN 164
Query: 369 DMTVEIPSILLVTDSVP 385
VE ++V
Sbjct: 165 QKKVEFKIDIVVLAFQK 181
Score = 42.9 bits (100), Expect = 3e-04
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
+ LTC + S + + N +AGM+ C +S+
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS-----KREKAVWVLNPEAGMWQCLLSDS 350
Query: 369 D 369
Sbjct: 351 G 351
Score = 42.1 bits (98), Expect = 6e-04
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 21/87 (24%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF---------------------SRENT 347
G + LTC + +++ W + +L
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEI 374
L ++ +K D+ Y+C+V ++ V++
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQL 95
Score = 38.2 bits (88), Expect = 0.010
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
++ G + G L ++ LQDSG + C
Sbjct: 128 VQCRSPRG---KNIQGGKTLSVSQLELQDSGTWTCT 160
Score = 35.9 bits (82), Expect = 0.042
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 7 SRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
RAD L I N +++DS Y CE++ L
Sbjct: 53 DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102
Score = 30.5 bits (68), Expect = 2.1
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
TL + + +G + K + L+V
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR 293
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 51.4 bits (123), Expect = 7e-07
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 288 TPLYSNDAPAF--NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA 341
+ P T A G+ + L C A PV W + +G + A
Sbjct: 197 DGVMGEYEPKIEVQFPETVPAEKGTTVKLEC----FALGNPVPTILWRRA-DGKPIARKA 251
Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
++ L + + DAG Y C N L + P + Q
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY-AQPNWVQII 302
Score = 46.8 bits (111), Expect = 2e-05
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 295 APAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----EN 346
P F + V K+ L+C W NG + G R +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL--NGTDVDIGMDFRYSVVDG 62
Query: 347 TLTLQEI-KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
+L + K DAG Y C +N T+ L + F + S
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRS 110
Score = 45.6 bits (108), Expect = 4e-05
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTLQ 351
P + ++ + C + Y W K NG L + + TL +
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK--NGDPLLTRDRIQIEQGTLNIT 352
Query: 352 EIKNSDAGMYVCKVSNK 368
+ SDAGMY C NK
Sbjct: 353 IVNLSDAGMYQCVAENK 369
Score = 45.2 bits (107), Expect = 6e-05
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 4 IKWSRADGLPLQRYA----EGNVLRITNARLQDSGKYKCE 39
I W RADG P+ R A +L I N + +D+G Y+C
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276
Score = 43.3 bits (102), Expect = 2e-04
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFG---AFSREN-TLTLQEIK 354
ST G + L C + Y W N + S+E L + +++
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF--NEYPSYQDNRRFVSQETGNLYIAKVE 165
Query: 355 NSDAGMYVCKVSN---KDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIEL 411
SD G Y C V+N + P+ L++ + + +P + P A +++L
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225
Score = 37.5 bits (87), Expect = 0.017
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 4 IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCE 39
+W + +G PL R E L IT L D+G Y+C
Sbjct: 327 YRWLK-NGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Score = 32.1 bits (73), Expect = 0.81
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 4 IKWSRADGLPL----QRYA--EGNVLRITNARLQDSGKYKC 38
W + P +R+ E L I D G Y C
Sbjct: 135 YAWIF-NEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTC 174
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 47.0 bits (112), Expect = 8e-07
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 294 DAPAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTL 350
+ + V + G + L C + W + +G L +R + +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLR-DDVQSINWLR--DGVQLAESNRTRITGEEVEV 58
Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
Q+ +D+G+Y C S+ + + V+D++P
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 39.7 bits (93), Expect = 3e-04
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 4 IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
I W R DG+ L R G + + ++ DSG Y C GSD +V
Sbjct: 34 INWLR-DGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP---SGSDTTYFSV 86
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 50.3 bits (120), Expect = 9e-07
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 302 STKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------TLTLQEIK 354
S G + C+ + E + +P + ++N L+L +
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
DAG+Y C SN T V +S
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 45.7 bits (108), Expect = 3e-05
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGMYVCK 364
G + L C D + R G + FS +++ K D+ YVCK
Sbjct: 104 GQEAVLPCLITDPALKDSVSL-MREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCK 162
Query: 365 VSNKDMTVEIPSILLVTDSV----PLFTQKPLSYLAL 397
I L + V P +P + +
Sbjct: 163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199
Score = 45.3 bits (107), Expect = 4e-05
Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 295 APAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
AP P G +TL C + W S +TLT +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRC----VSNGSVEWDGP-ISPYWTLDPESPGSTLTTRNA 58
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ G Y C M L V D +
Sbjct: 59 TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96
Score = 41.9 bits (98), Expect = 5e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 4 IKWSRADGLPL-----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
+ R G + ++ I A++ DS Y C+ + S + L V R
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181
Query: 59 M 59
+
Sbjct: 182 V 182
Score = 38.0 bits (88), Expect = 0.010
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 4 IKWSRADGLPLQRYAE--GNVLRITNARLQDSGKYKCE 39
++W E G+ L NA +++G Y+C
Sbjct: 32 VEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCT 69
Score = 32.2 bits (73), Expect = 0.66
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 15 QRYAEGNVLRITNARLQDSGKYKCE 39
Y + L + QD+G Y C
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCV 263
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 50.1 bits (119), Expect = 1e-06
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSK-----------RSNGHVLPFGAFSRENTLTLQEIKNS 356
G T+ C D+ V W K + N + R+ TLT+ +
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 357 DAGMYVCKVSNKDMTVEIPSILLVTD 382
D+G+++C +N + + + L V +
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKVVE 288
Score = 43.6 bits (102), Expect = 1e-04
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 284 TGSATPLYSNDAPAFNPVSTK-EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF 342
SA+P P+ +P ++ G ++LTC P W+ ++ + +
Sbjct: 2 QPSASP-GEPSPPSIHPAQSELIVEAGDTLSLTC----IDPDFVRWTFKTYFNEMVE--- 53
Query: 343 SRENTLTLQEIKNSDAGMYVCKVSNK-----DMTVEIPSILLVTDS 383
+++N ++ + + G Y C SN + V P+ L +
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGL 99
Score = 41.6 bits (97), Expect = 6e-04
Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 10/124 (8%)
Query: 283 DTGSATPLYSNDAP-AFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
S+ ++ D F S + C +Y+ +G LP
Sbjct: 79 GLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL-IECDGKSLPTDL 137
Query: 342 ---FSRENTLTLQEIKNS-DAGMYVCKVSNKDMTVEIPSILL----VTDSVPLFTQKPLS 393
+ + +T++ +K + C + L ++P+ + S
Sbjct: 138 TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS 197
Query: 394 YLAL 397
+L
Sbjct: 198 HLLK 201
Score = 37.0 bits (85), Expect = 0.018
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMM 60
+++W+ + N A +G Y C + S YV + +
Sbjct: 37 PDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNS--NGLTSSIYVFVRDPAKL 94
Query: 61 FV 62
F+
Sbjct: 95 FL 96
Score = 35.5 bits (81), Expect = 0.065
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 4 IKWSRADGLPL-----QRYAEGNVLRITNA-RLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
DG L + I N R +C Q ++ SD L V
Sbjct: 123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182
Query: 58 RMM 60
+
Sbjct: 183 EAI 185
Score = 30.9 bits (69), Expect = 1.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 16 RYAEGNVLRITNARLQDSGKYKCE 39
Y L I++AR+ DSG + C
Sbjct: 247 NYERQETLTISSARVDDSGVFMCY 270
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 300 PVSTKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHVLPFGAFSR------ENTLTLQ 351
V KE G + L C+ + Y W N + R L +
Sbjct: 17 EVRVKE---GKGMVLLCDPPYHFPDDLSYRWLL--NEFPVFITMDKRRFVSQTNGNLYIA 71
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
++ SD G Y C VS+ +T + S + +P T KP
Sbjct: 72 NVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP 111
Score = 46.4 bits (110), Expect = 1e-05
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAF--SRENT 347
A G +TL C A PV + W K +P A +
Sbjct: 113 PADIVVQFKDVYALMGQNVTLEC----FALGNPVPDIRWRK--VLEPMPSTAEISTSGAV 166
Query: 348 LTLQEIKNSDAGMYVCKVSN 367
L + I+ D G+Y C+ N
Sbjct: 167 LKIFNIQLEDEGIYECEAEN 186
Score = 42.6 bits (100), Expect = 2e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 4 IKWSRADGLPLQRYA----EGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNV 56
I+W + P+ A G VL+I N +L+D G Y+CE I+G D + + V
Sbjct: 145 IRWRK-VLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQAR----IYV 199
Query: 57 E 57
+
Sbjct: 200 Q 200
Score = 32.5 bits (74), Expect = 0.36
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 9/43 (20%)
Query: 4 IKWSRADGLPLQRYA--------EGNVLRITNARLQDSGKYKC 38
+W + P+ L I N D G Y C
Sbjct: 42 YRWLL-NEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSC 83
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 50.6 bits (121), Expect = 1e-06
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 287 ATPLYSNDAPAF----NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLP 338
T + P+F S++ G + L C A + W K G LP
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC----IASGVPTPDIAWYK--KGGDLP 264
Query: 339 FGAFSREN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
EN L + + D+G Y C SNK ++ + V + P + +P
Sbjct: 265 SDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYWLDEP 319
Score = 47.2 bits (112), Expect = 1e-05
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
AP + + G L C + W NG L + +T+
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV--NGEPLQSAPPNPNREVAGDTI 369
Query: 349 TLQEIKNSDAGMYVCKVSNK 368
++ + S +Y C SN+
Sbjct: 370 IFRDTQISSRAVYQCNTSNE 389
Score = 46.8 bits (111), Expect = 2e-05
Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 14/111 (12%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------EN 346
P I + C + W++ N R
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR--NSRFFNIAKDPRVSMRRRSG 73
Query: 347 TLTLQEI----KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
TL + G Y C NK T I L PL+ ++ L
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Score = 39.5 bits (92), Expect = 0.004
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 4 IKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEI---QGHDSFRGSDYVKLNV 56
I W + G LP + LRITN +DSG+Y C G + + V
Sbjct: 254 IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT----ISVRV 309
Query: 57 E 57
+
Sbjct: 310 K 310
Score = 36.4 bits (84), Expect = 0.034
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-------RYAEGNVLRITNARLQDSGKYKCE 39
++W +G PLQ R G+ + + ++ Y+C
Sbjct: 344 VQWMV-NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Score = 34.8 bits (80), Expect = 0.11
Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 295 APAFN--PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFG----AFSRENT 347
+P + + G+ +TL CN W + +
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS--SSMEPITQDKRVSQGHNGD 172
Query: 348 LTLQEIKNSDA-GMYVCKVSN---KDMTVEIPSILLVTDSVPLFTQKP 391
L + D Y C + + P L V + + + P
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTP 220
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQE 352
P G +TLTC + + W K +G LP L L E
Sbjct: 10 EVQLVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMK--DGVPLPL---PPSPVLILPE 63
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
I D G Y C ++ + + ++ P
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 38.5 bits (90), Expect = 7e-04
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
I W + DG+PL VL + QD G Y C
Sbjct: 42 IHWMK-DGVPLP-LPPSPVLILPEIGPQDQGTYSCV 75
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 48.6 bits (116), Expect = 1e-06
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------AFSRENTLTLQEIKN 355
S E G TC E ++ G + + LT+
Sbjct: 10 SKVELSVGESKFFTCTAIGEPESIDWYNP--QGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
DAG+Y C+ ++ + +++L F +
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV 103
Score = 44.8 bits (106), Expect = 2e-05
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
F VS +E G + C +W + + + +R N L
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY--HNEEVTTISDNRFAMLANNNL 153
Query: 349 TLQEIKNSDAGMYVCKVSNK 368
+ I SD G+Y C+ +
Sbjct: 154 QILNINKSDEGIYRCEGRVE 173
Score = 37.8 bits (88), Expect = 0.006
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-----RYA--EGNVLRITNARLQDSGKYKCE 39
+ W + R+A N L+I N D G Y+CE
Sbjct: 128 VSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 169
Score = 34.8 bits (80), Expect = 0.058
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 4 IKWSRADGLPL--------QRYAEGNVLRITNARLQDSGKYKCE 39
I W G + Q+ + L I NA ++D+G Y+C+
Sbjct: 33 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 50.8 bits (121), Expect = 1e-06
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSK---------RSNGHVLPFGAFSRENTLT 349
++ G + T+TC D+ + V TW + + N + R+ TLT
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS--VPLFTQKPLSYLALP 398
+ + +D+G+++C +N + + + L V D + +F +
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327
Score = 47.7 bits (113), Expect = 1e-05
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 281 RFDTGSATP---LYSNDAPAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHV 336
R TGS+ P P+ +P S G +I L C P W+
Sbjct: 19 RVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEIL--- 71
Query: 337 LPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
+++N ++ + ++ G Y C +
Sbjct: 72 -DETNENKQNEWITEKAEATNTGKYTCTNKHG 102
Score = 43.9 bits (103), Expect = 2e-04
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 19/104 (18%)
Query: 302 STKEAPYGSKITLTCNNDLEA---PVEYTWSKRSNGHVLPFGA-----------FSRENT 347
+T G + L + EA P W +
Sbjct: 321 TTVFVNDGENVDLIV--EYEAFPKPEHQQWIY--MNRTFTDKWEDYPKSENESNIRYVSE 376
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L L +K ++ G Y VSN D+ I + + ++ P
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAI-AFNVYVNTKPEILTYD 419
Score = 43.5 bits (102), Expect = 3e-04
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)
Query: 281 RFDTGSATPLYSNDAP-AFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLP 338
+ ++ ++ D F + + + C D E K G LP
Sbjct: 100 KHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTN--YSLKGCQGKPLP 157
Query: 339 FGA---FSRENTLTLQEIKNS-DAGMYVCKVSNKDMTVEIPSILL----VTDSVPLFTQK 390
+ + ++ +K + C V + +V +L +VP+ +
Sbjct: 158 KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS 217
Query: 391 PLSYLALP 398
SYL
Sbjct: 218 KASYLLRE 225
Score = 39.3 bits (91), Expect = 0.005
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKC 38
++KW+ + L + N A ++GKY C
Sbjct: 61 PGFVKWTF-EILDETNENKQNEWITEKAEATNTGKYTC 97
Score = 36.6 bits (84), Expect = 0.032
Identities = 12/103 (11%), Positives = 19/103 (18%), Gaps = 17/103 (16%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENT----------L 348
L C W R + VLP + ++
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
++ G CK N + P
Sbjct: 477 SIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN-NKEQIHP 518
Score = 33.9 bits (77), Expect = 0.24
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 22/105 (20%)
Query: 3 YIKWSRADGLPLQR-------------YAEGNVLRITNARLQDSGKYKCE---IQGHDSF 46
Y W R + + Y L I++AR+ DSG + C G +
Sbjct: 243 YSTWKR-ENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV 301
Query: 47 RGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVP 91
L V F++ I P + G ++ +V A P
Sbjct: 302 T----TTLEVVDKGFIN-IFPMINTTVFVNDGENVDLIVEYEAFP 341
Score = 30.4 bits (68), Expect = 3.0
Identities = 5/50 (10%), Positives = 11/50 (22%), Gaps = 14/50 (28%)
Query: 3 YIKWSRADGLPL-------------QRYAEGNVLRITNARLQDSGKYKCE 39
+ +W + L +T + + G Y
Sbjct: 345 HQQWIY-MNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFL 393
Score = 28.9 bits (64), Expect = 8.1
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 22 VLRITNARLQDSGKYKCE 39
I ++ + +G +C+
Sbjct: 475 QSSIDSSAFKHNGTVECK 492
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 49.5 bits (118), Expect = 1e-06
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 283 DTGSATPLYSNDAPAFNPVSTKEAPY--GSKITLTCNNDLEAPV-EYTWSKRSNGHVLPF 339
+G + P+ + + + G + L C+ + V + + NG F
Sbjct: 69 LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR--NGKAFKF 126
Query: 340 GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
F + LT+ + S G Y C K + V + P
Sbjct: 127 --FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170
Score = 48.8 bits (116), Expect = 2e-06
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAP---VEYTWSKRSNGHVLPFGAFSRENTLTLQ 351
AP N T G+ +TL+C L ++ +S L + + +
Sbjct: 171 APVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG--RNTSSEYQIL 228
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL 379
+ D+G+Y C+ + +D V S L
Sbjct: 229 TARREDSGLYWCEAATEDGNVLKRSPEL 256
Score = 48.8 bits (116), Expect = 3e-06
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TL C L W NG + + + +D+G Y C+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFL--NGTATQ----TSTPSYRITSASVNDSGEYRCQRGL 69
Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
+ I L L Q
Sbjct: 70 ---SGRSDPIQLEIHRGWLLLQVS 90
Score = 43.8 bits (103), Expect = 1e-04
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 3 YIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
+ + R +G + + + L I + +G Y C G + S + + V+
Sbjct: 114 NVLYYR-NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTVK 166
Score = 41.8 bits (98), Expect = 4e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 4 IKWS-RADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQG--HDSFRGSDYVKLNV 56
+ +S L+ + +I AR +DSG Y CE + + S ++L V
Sbjct: 205 LYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 41.8 bits (98), Expect = 5e-04
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
++ +W +G Q RIT+A + DSG+Y+C+ SD ++L + R
Sbjct: 31 SSSTQWFL-NGTATQT--STPSYRITSASVNDSGEYRCQRGL---SGRSDPIQLEIHR 82
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 285 GSATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS 343
GS+ AP+F + + G L C+ TW NG + + +
Sbjct: 1 GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--NGQPIQYARST 58
Query: 344 REN---TLTLQEIKNSDAGMYVCKVSNK 368
E L +Q+ D G Y C N
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENA 86
Score = 35.8 bits (83), Expect = 0.009
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 4 IKWSRADGLPLQ----RYAEGN-VLRITNARLQDSGKYKCE 39
I W +G P+Q G L I +A +D G Y C
Sbjct: 43 ITWLL-NGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 82
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 49.8 bits (118), Expect = 2e-06
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 309 GSKITLTC----NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCK 364
G TLT + L + + YTW+K + + TLT+ + + +AG Y
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTK--DDQPHE----NNTATLTVADATSENAGSYKVT 70
Query: 365 VSNKDMTVEIPSILLVTD--SVPLFTQKPLSYLALPTLTDAHLHFSIELSF-KPTDYNGL 421
V + D + S + + + + + +P + TD LH +++ S K N
Sbjct: 71 VQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQ-TDVELHATVKFSGGKTPADNYE 129
Query: 422 IMYT 425
+ Y+
Sbjct: 130 LHYS 133
Score = 42.9 bits (100), Expect = 3e-04
Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 16/105 (15%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDL--------EAPVEYTWSKRSNGHVLPFGAFSREN 346
+ + L + Y+WSK V+
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK--GEDVI-----DTTQ 145
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+T+QE G+Y KV + S + +
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSA-ASASTKIMLATMNVDQD 189
Score = 35.2 bits (80), Expect = 0.064
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVD 63
W++ D P + L + +A +++G YK +Q D+ + +E +
Sbjct: 38 YTWTK-DDQPHE--NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIV 94
Query: 64 GIGP 67
I
Sbjct: 95 NITE 98
Score = 34.0 bits (77), Expect = 0.15
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 22/101 (21%)
Query: 295 APAFNPVSTKEAPYGSKITLTC----------NNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
+ V +K G++I+L + ++Y W + G + P S
Sbjct: 185 NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSE 244
Query: 345 ------------ENTLTLQEIKNSDAGMYVCKVSNKDMTVE 373
+ L + D + C +
Sbjct: 245 VGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285
Score = 29.8 bits (66), Expect = 3.5
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 6 WSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
WS+ + + + I +G Y ++
Sbjct: 134 WSK-GEDVIDTTQD---ITIQEFTADKNGVYTVKVW 165
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 47.9 bits (114), Expect = 2e-06
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
I L C++ + + T+ + NG + F + + +
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ--NGKDRKY--FHHNSDFHIPKA 144
Query: 354 KNSDAGMYVCKVSNK 368
D+G Y C+
Sbjct: 145 TLKDSGSYFCRGLVG 159
Score = 46.8 bits (111), Expect = 5e-06
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TL C W N ++ S+ ++ + +D+G Y C+ +
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFH--NESLIS----SQASSYFIDAATVNDSGEYRCQTNL 75
Query: 368 KDMTVEIPSILLVTDSVPLFTQKPLSY 394
++ + L L Q P
Sbjct: 76 STLS---DPVQLEVHIGWLLLQAPRWV 99
Score = 42.6 bits (100), Expect = 1e-04
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 2 AYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + +G + + + I A L+DSG Y C S+ V + +
Sbjct: 119 HKVTYLQ-NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 40.6 bits (95), Expect = 5e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ +W + + + + I A + DSG+Y+C+ SD V+L V
Sbjct: 37 DNSTQWFH-NESLISS--QASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEV 86
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 44.4 bits (105), Expect = 2e-06
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+S + C S C+++G+C Y C C G+ G+RC
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 36.4 bits (84), Expect = 0.001
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
P+ C + G+C + Y C+C+ GY G+ C+
Sbjct: 7 PLSHDGYCLHDGVCM-YIEALDKYACNCVVGYIGERCQ 43
Score = 29.8 bits (67), Expect = 0.33
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 618 CKNGGMCKVTPD--SYECLCSLGYAPPNC 644
C + G+C Y C C +GY C
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERC 42
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 47.7 bits (114), Expect = 2e-06
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE---NNMCMKGDVC 618
CS + PC+ ++ C G+ + + C +
Sbjct: 79 CSLGK----AWGTPCEMCPAVNTSEYK---ILCPGGEGFRPNPITVILEDIDECQELPGL 131
Query: 619 KNGGMCKVTPDSYECLCSLGY 639
GG C T S++C C GY
Sbjct: 132 CQGGKCINTFGSFQCRCPTGY 152
Score = 46.6 bits (111), Expect = 4e-06
Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 6/72 (8%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGY--SGDHCEKENNMCMKGDVCKNGGMCKVTPDSYE 632
C + CS G S C G C+ +
Sbjct: 48 NCYLDIRPRGDNGD---TACSNEIGVGVSKASCCCSLGKAW-GTPCEMCPAVNTSEYKIL 103
Query: 633 CLCSLGYAPPNC 644
C G+ P
Sbjct: 104 CPGGEGFRPNPI 115
Score = 45.8 bits (109), Expect = 8e-06
Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 10/72 (13%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE---NNMCMKGDVCKNGGMCKVT 627
C G C T S Y C C + + C +
Sbjct: 6 CLDPTTCISGNCVNTPGS---YICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGD 58
Query: 628 PDSYECLCSLGY 639
C +G
Sbjct: 59 NGDTACSNEIGV 70
Score = 43.1 bits (102), Expect = 6e-05
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 17/82 (20%)
Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--------YPGACGDGSCQDV 194
C + C GF + PG C G C +
Sbjct: 86 GTPCEMCPAVNT--SEYKILCPGGEGFRPNPI---TVILEDIDECQELPGLCQGGKCINT 140
Query: 195 DGAMKCLCPIG----TAGKRCE 212
G+ +C CP G + C+
Sbjct: 141 FGSFQCRCPTGYYLNEDTRVCD 162
Score = 42.3 bits (100), Expect = 1e-04
Identities = 8/85 (9%), Positives = 13/85 (15%), Gaps = 15/85 (17%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD---RCSVLGEPCYPGACGDGSC 191
+ C G C LG+ +
Sbjct: 44 TRSGNCYLDIRPRG--------DNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95
Query: 192 QDVDGAMKCLCPIG----TAGKRCE 212
+ + C G E
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILE 120
Score = 40.8 bits (96), Expect = 4e-04
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGS 190
V+ C + NC+N T Y C CPP F + V G C D
Sbjct: 3 VNECLDPTTCISGNCVN--------TPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIR 54
Query: 191 CQDVDGAMKCLCPIG 205
+ +G C IG
Sbjct: 55 PRGDNGDTACSNEIG 69
Score = 29.3 bits (66), Expect = 3.6
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 610 NMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKR 647
N C+ C +G C TP SY C C +
Sbjct: 4 NECLDPTTCISG-NCVNTPGSYICDCPPDFELNPTRVG 40
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSG---------DHCEKENNM 611
C + + C + G + + + + C GYS D CE +
Sbjct: 57 RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGV 116
Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGY 639
C G+C T S++C C G
Sbjct: 117 C-------KNGLCVNTRGSFKCQCPSGM 137
Score = 46.2 bits (110), Expect = 4e-06
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
C PC N G+C + S + C C + + D + + K G C T
Sbjct: 7 CESSPCIN-GVCKNSPGS---FICECSSESTLDPTKTICI-----ETIK--GTCWQTVID 55
Query: 631 YECLCSLGYAPPNC 644
C ++ A
Sbjct: 56 GRCEININGATLKS 69
Score = 45.0 bits (107), Expect = 1e-05
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 134 SCNT-CKSSKHNNCINNGLCQDAATRIG-YTCICPPGFSGDRCSVLGEPC--------YP 183
N + K C + G + + IC G+S + G C +P
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIK----GTQCEDIDECEVFP 114
Query: 184 GACGDGSCQDVDGAMKCLCPIG----TAGKRC 211
G C +G C + G+ KC CP G G+ C
Sbjct: 115 GVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCP 203
+ CIN G+C++ + + C C + D C G+C +C
Sbjct: 10 SPCIN-GVCKN--SPGSFICECSSESTLDPT---KTICIE--TIKGTCWQTVIDGRCEIN 61
Query: 204 IGTAGKRCE 212
I A + +
Sbjct: 62 INGATLKSQ 70
Score = 35.0 bits (81), Expect = 0.031
Identities = 12/73 (16%), Positives = 17/73 (23%), Gaps = 12/73 (16%)
Query: 145 NCINNGLCQDAATRIGYTCICPPGFS--GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLC 202
CI T I C + +C + C +C
Sbjct: 40 ICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVD-------PIC 92
Query: 203 PIG---TAGKRCE 212
G G +CE
Sbjct: 93 GKGYSRIKGTQCE 105
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 45.6 bits (108), Expect = 2e-06
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 290 LYSNDAPAFNPV--STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--E 345
L P PV + G + L C + W + +G L +R
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLR--DGVQLVESNRTRITG 59
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
+ +++ +D+G+Y C S+ + + V+
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 4 IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCEIQ---GHDSFRGSDYVKLNV 56
I W R DG+ L R G + + ++ DSG Y C G D+ Y +NV
Sbjct: 40 INWLR-DGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTT----YFSVNV 94
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 50.1 bits (119), Expect = 2e-06
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+C K C +G C C+C ++G C+ C +
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSC------GDCLCDSDWTGYYCN---CTTRTDTCMSSNGLL 574
Query: 194 VDGAMKCLC------PIGTAGKRCEQ 213
G KC C G+ G CE+
Sbjct: 575 CSGRGKCECGSCVCIQPGSYGDTCEK 600
Score = 47.8 bits (113), Expect = 1e-05
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 131 GVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGS 190
N+ + + N G+C+ +G C C P
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 191 CQDVDGAMKCLCPIGTAGKRCEQ 213
+ + G +C+C GK +
Sbjct: 499 GECLCG--QCVCHSSDFGKITGK 519
Score = 47.0 bits (111), Expect = 3e-05
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 18/98 (18%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE------NNMCMK 614
D S P C G C G C C + G K + + K
Sbjct: 481 SQQDECSPREGQP-VCSQRGEC------LCG-QCVCHSSDFGKITGKYCECDDFSCVRYK 532
Query: 615 GDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
G++C G C +CLC + C +
Sbjct: 533 GEMCSGHGQC----SCGDCLCDSDWTGYYCNCTTRTDT 566
Score = 46.2 bits (109), Expect = 4e-05
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN----MCMKGDVCK 619
D S + C +G C +C C + ++G +C M G +C
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSC-------GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCS 576
Query: 620 NGGMCKVTPDSYECLCS-LGYAPPNCAK 646
G C + C+C G C K
Sbjct: 577 GRGKC----ECGSCVCIQPGSYGDTCEK 600
Score = 46.2 bits (109), Expect = 4e-05
Identities = 20/96 (20%), Positives = 24/96 (25%), Gaps = 23/96 (23%)
Query: 131 GVDSCNTCKSSKHNN-CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
+ C + C G C C+C G G+ C C D
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECLCG------QCVCHSSDFGKIT---GKYC---ECDDF 526
Query: 190 SCQDVDGAM----------KCLCPIGTAGKRCEQKI 215
SC G M CLC G C
Sbjct: 527 SCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTT 562
Score = 45.8 bits (108), Expect = 6e-05
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 16/83 (19%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCIC-PPGFSGDRCSVLGEPCYPGACGDGSC 191
+TC SS C G C+ +C+C PG GD C C C
Sbjct: 562 TRTDTCMSSNGLLCSGRGKCEC------GSCVCIQPGSYGDTCEKC-PTCPDACTFKKEC 614
Query: 192 QDVDGAMKCLCPIGTAGKRCEQK 214
C G ++
Sbjct: 615 --------VECKKFDRGALHDEN 629
Score = 42.4 bits (99), Expect = 6e-04
Identities = 17/85 (20%), Positives = 21/85 (24%), Gaps = 12/85 (14%)
Query: 134 SCNTCKSSKH----NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
C +C + + C C DA T C G E C D
Sbjct: 582 ECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHD---ENTCNRYCRDE 638
Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQK 214
+ V L G C K
Sbjct: 639 -IESVK----ELKDTGKDAVNCTYK 658
Score = 40.5 bits (94), Expect = 0.002
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 10/91 (10%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSE-----RGYNCSCLTGYSGDHCEKENNMCMKG 615
DC+ ++ C N + G C C + E +
Sbjct: 434 DCAC-QAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQ 492
Query: 616 DVCKNGGMCKVTPDSYECLCSLGYAPPNCAK 646
VC G C +C+C K
Sbjct: 493 PVCSQRGEC----LCGQCVCHSSDFGKITGK 519
Score = 38.5 bits (89), Expect = 0.009
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 22/82 (26%)
Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
E P C P C C C G ++ C C++
Sbjct: 599 EKCPTC-PDACTFKKEC-----------VECKKFDRGALHDENT--C--NRYCRDEIES- 641
Query: 626 VTPDSYECLCSLGYAPPNCAKR 647
+ L G NC +
Sbjct: 642 -----VKELKDTGKDAVNCTYK 658
Score = 34.7 bits (79), Expect = 0.14
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 13/94 (13%)
Query: 130 VGVDSCNTCKSSKHNNCINNGLCQDAATRIGYT-CICPPGFSGDRCSVLGEPC------- 181
G+ SC K + + + I P GF + C
Sbjct: 381 PGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQ 440
Query: 182 ---YPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
C +G+ G C C G G +CE
Sbjct: 441 AEPNSHRCNNGNGTFECG--VCRCGPGWLGSQCE 472
Score = 30.4 bits (68), Expect = 3.2
Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 3/87 (3%)
Query: 558 NIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
+ + S + C T + + C +
Sbjct: 388 GLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHR 447
Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
C NG + C C G+ C
Sbjct: 448 CNNGNGT---FECGVCRCGPGWLGSQC 471
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 48.3 bits (115), Expect = 2e-06
Identities = 23/102 (22%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGA---FSRENTLT 349
F S G + C P +W K +G L R L
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK--DGSPLDDKDERITIRGGKLM 168
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ + SDAG YVC +N E L P F +
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
Score = 37.9 bits (88), Expect = 0.006
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 4 IKWSRADGLPLQ-----RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
I W + DG PL G L IT R D+GKY C R S+ +L V
Sbjct: 144 ISWKK-DGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Score = 37.9 bits (88), Expect = 0.007
Identities = 21/107 (19%), Positives = 28/107 (26%), Gaps = 16/107 (14%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS--------RENTLTLQEIKN- 355
G TL C + W K G + +L I +
Sbjct: 20 IVSKGEPATLNCKAEGRPTPTIEWYK--GGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 356 ----SDAGMYVCKVSNKD-MTVEIPSILLVTDSVPLFTQKPLSYLAL 397
D G+YVC N V + L V F Q P +
Sbjct: 78 RKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 47.6 bits (113), Expect = 3e-06
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
G +TLTCN N+ W NG + ++L + K D+G Y C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFH--NGSLSE----ETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
+ + + L S L Q
Sbjct: 73 VNES---EPVYLEVFSDWLLLQAS 93
Score = 46.0 bits (109), Expect = 9e-06
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + DG L+ + E + + ITNA ++DSG Y C + S+ + + V
Sbjct: 118 VIYYK-DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 44.1 bits (104), Expect = 3e-05
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 309 GSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
G + L C+ V + + K +G L + + + +++ D+G Y C
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYK--DGEALKY--WYENHNISITNATVEDSGTYYCTGKV 155
Score = 39.5 bits (92), Expect = 0.001
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMM 60
+ KW +G + + L I NA+ +DSG+YKC+ Q + S+ V L V
Sbjct: 34 VSSTKWFH-NGSLSE--ETNSSLNIVNAKFEDSGEYKCQHQQVN---ESEPVYLEVFSDW 87
Query: 61 FV 62
+
Sbjct: 88 LL 89
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 47.5 bits (113), Expect = 3e-06
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENTLTLQEIKN 355
G + L C+ + + W K + +P L+L+ ++
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
SDAG Y C+V + T + L + VP FT +P
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP 105
Score = 42.1 bits (99), Expect = 2e-04
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 17/86 (19%)
Query: 290 LYSNDAPAFN--PVSTKEAPYGSKITLTCNNDLEA-----PVEYTWSKRSNGHVLPFGAF 342
L P F P P + L+C EA PV W + +
Sbjct: 93 LTVEGVPFFTVEPKDL-AVPPNAPFQLSC----EAVGPPEPVTIVWWR--GTTKIGG--- 142
Query: 343 SRENTLTLQEIKNSDAGMYVCKVSNK 368
+ L + + M+ C+ N
Sbjct: 143 PAPSPSVLNVTGVTQSTMFSCEAHNL 168
Score = 37.9 bits (88), Expect = 0.005
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 4 IKWSRADGLPLQRYAEGNV----------LRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
I+W + DG +Q + + L + + D+G+Y C+++ S V
Sbjct: 34 IQWVK-DGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 92
Query: 54 LNVE 57
L VE
Sbjct: 93 LTVE 96
Score = 34.0 bits (78), Expect = 0.11
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
I W R + + + + S + CE
Sbjct: 131 IVWWR-GTTKIGG-PAPSPSVLNVTGVTQSTMFSCE 164
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 48.0 bits (114), Expect = 3e-06
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
I L C++ + + T+ + NG + F + + +
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ--NGKGRKY--FHHNSDFYIPKA 144
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSI-LLVTDSVP 385
D+G Y C+ V ++ + +T +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 45.3 bits (107), Expect = 2e-05
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 309 GSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TL C W N ++ S+ ++ + D+G Y C+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFH--NESLIS----SQASSYFIDAATVDDSGEYRCQTQL 75
Query: 368 KDMTVEIPSILLVTDSVPLFTQKPLSY 394
++ P L V L Q P
Sbjct: 76 STLS--DPVQLEVH-IGWLLLQAPRWV 99
Score = 42.6 bits (100), Expect = 2e-04
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 AYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + +G + + + I A L+DSG Y C S+ V++ +
Sbjct: 119 HKVTYLQ-NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 40.6 bits (95), Expect = 9e-04
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ +W + + + + I A + DSG+Y+C+ Q SD V+L V
Sbjct: 37 DQSTQWFH-NESLISS--QASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEV 86
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 46.3 bits (109), Expect = 3e-06
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 299 NPVSTKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHVLP------------FGAFSR 344
+P E G K+ L C +L +++ W S+ H
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
+TLT+ + SD G+Y C S+ MT + + + V +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 30.5 bits (68), Expect = 0.85
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 15 QRYAEGNVLRITNARLQDSGKYKC 38
+ + L I D G Y C
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTC 91
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 48.5 bits (115), Expect = 4e-06
Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 17/155 (10%)
Query: 229 AYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSAT 288
A+P + V + + ++L + D+G F A E + +
Sbjct: 122 AHPRA-KVTLNGVPAQPLGPRAQ--LLLKATPEDNG-RSFSCSATLEVAGQLIHKNQTRE 177
Query: 289 PLYSNDAPAFNPVSTKE---APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE 345
L P + P S+ T C E K LP G
Sbjct: 178 -LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPIG----- 230
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
+ G Y+C+ + V + V
Sbjct: 231 ---ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 30.0 bits (67), Expect = 2.5
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 309 GSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEI-----KNSDAGMYV 362
++ T+ C+ D PV E L ++ + + ++
Sbjct: 18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 77
Query: 363 CKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
C V + + E + S P
Sbjct: 78 CAVILGNQSQET-LQTVTIYSFPAPNVILTK 107
Score = 28.5 bits (63), Expect = 9.0
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
+K + PL + G Y C
Sbjct: 217 LKCLKDGTFPLP------IGESVTVTRDLEGTYLCR 246
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 44.6 bits (106), Expect = 4e-06
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 571 CA--PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN----NMCMKGDVCKNGGMC 624
C P C G C T + C C GY +N + C + + GG+C
Sbjct: 6 CRISPDLCGR-GQCVNTPGD---FECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 625 KVTPDSYECLCSLGY 639
T SY C C G+
Sbjct: 62 HNTEGSYRCECPPGH 76
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 18/71 (25%)
Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--------YPGACGDGSCQDV 194
C+N T + C C G+ ++ + C P C G C +
Sbjct: 15 RGQCVN--------TPGDFECKCDEGYESG--FMMMKNCMDIDECQRDPLLCRGGVCHNT 64
Query: 195 DGAMKCLCPIG 205
+G+ +C CP G
Sbjct: 65 EGSYRCECPPG 75
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 49.1 bits (117), Expect = 4e-06
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSRENTLTLQEIKNSD 357
S A G L C P +TW + V+ + + L + + + D
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLR--GEEVIQLRSKKYSLLGGSNLLISNVTDDD 286
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+G Y C V+ K+ + + L V P F P
Sbjct: 287 SGTYTCVVTYKNENISASAELTVLVP-PWFLNHP 319
Score = 45.6 bits (108), Expect = 4e-05
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 304 KEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGM 360
A I C + W K NG V+ + L + + SD G
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMK--NGDVVIPSDYFQIVGGSNLRILGVVKSDEGF 379
Query: 361 YVCKVSNK 368
Y C N+
Sbjct: 380 YQCVAENE 387
Score = 43.7 bits (103), Expect = 2e-04
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 14/109 (12%)
Query: 302 STKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLT----------L 350
S G + L C+ + + V W K +G +L G R+ L
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIKWKK--DGLILALGMDDRKQQLPNGSLLIQNILH 86
Query: 351 QEIKNSDAGMYVCKVSNKDM-TVEIPSILLVTDSVPLFTQKPLSYLALP 398
D G+Y C+ S D ++ + ++ F + S A
Sbjct: 87 SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM 135
Score = 41.0 bits (96), Expect = 0.001
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------ENTLTLQEIKNSDA 358
A G + L C + W K N L L + ++ D+
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQK--NQQDLNPIPGDSRVVVLPSGALQISRLQPGDS 189
Query: 359 GMYVCKVSNKDMTVEIPSILLV------TDSVPLFTQKPLSYLAL 397
G+Y C N T + F Q+P + +A+
Sbjct: 190 GVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Score = 40.6 bits (95), Expect = 0.002
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 4 IKWSRADGLPLQ------RY--AEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
I W + + L R L+I+ + DSG Y+C + S R + ++
Sbjct: 153 IHWQK-NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVR 211
Query: 56 V 56
+
Sbjct: 212 I 212
Score = 37.5 bits (87), Expect = 0.016
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 4 IKWSRADG---LPLQRY--AEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVK 53
W R + L ++Y G+ L I+N DSG Y C + S V
Sbjct: 253 FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 34.4 bits (79), Expect = 0.15
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 4 IKWSRADGLPLQ---RY--AEGNVLRITNARLQDSGKYKCE 39
+ W + +G + + G+ LRI D G Y+C
Sbjct: 344 VNWMK-NGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 46.7 bits (111), Expect = 5e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
E G I L C++ + P+ + T+ + NG F + T ++ +
Sbjct: 87 WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ--NGKSQKF--SHLDPTFSIPQAN 142
Query: 355 NSDAGMYVCKVSNK 368
+S +G Y C +
Sbjct: 143 HSHSGDYHCTGNIG 156
Score = 45.2 bits (107), Expect = 1e-05
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + +G + I A SG Y C + S V + V
Sbjct: 118 VTFFQ-NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 44.4 bits (105), Expect = 3e-05
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 309 GSKITLTCNNDLEAPVE-YTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+TLTC + W NG+++P + + N+D+G Y C+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFH--NGNLIP----THTQPSYRFKANNNDSGEYTCQTGQ 72
Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
++ P L V L Q P
Sbjct: 73 --TSLSDPVHLTVL-FEWLVLQTP 93
Score = 41.3 bits (97), Expect = 3e-04
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 1 NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMM 60
+ I+W +G + A DSG+Y C+ SD V L V
Sbjct: 34 SDSIQWFH-NGNLIPT--HTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVLFEW 87
Query: 61 FV 62
V
Sbjct: 88 LV 89
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 47.4 bits (112), Expect = 5e-06
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN-TLTLQEIKN 355
V+ +TLTC ++ + W N L S+ N L + IK
Sbjct: 116 QVTNTTVKELDSVTLTCLSN-DIGANIQWLF--NSQSLQLTERMTLSQNNSILRIDPIKR 172
Query: 356 SDAGMYVCKVSN 367
DAG Y C++SN
Sbjct: 173 EDAGEYQCEISN 184
Score = 45.0 bits (106), Expect = 3e-05
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 309 GSKITLTCNNDLEAPVEYTWSK--------------RSNGHVLPFGAFS-REN-----TL 348
+ + L +N A + W K ++ A+S RE +L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
Q I D G+Y +++++ ++ ++
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT 118
Score = 42.7 bits (100), Expect = 2e-04
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 4 IKWSRADGLPLQ---RY---AEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
I+W + LQ R ++LRI + +D+G+Y+CEI S R S+ +KL++
Sbjct: 141 IQWLF-NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 35.8 bits (82), Expect = 0.028
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGP 67
L ++D G Y ++ + R V+ +V + + +
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 46.9 bits (111), Expect = 5e-06
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
G +TLT + + ++ TL++ +++ D+G + C V
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQN 165
Query: 369 DMTVEIPSILLV 380
VE ++V
Sbjct: 166 QKKVEFKIDIVV 177
Score = 43.8 bits (103), Expect = 5e-05
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF---------------------SRENT 347
G + LTC + +++ W + +L
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
L ++ +K D+ Y+C+V ++ V++ L
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103
Score = 38.8 bits (90), Expect = 0.003
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKC 38
++ G +Q G L ++ LQDSG + C
Sbjct: 129 VQCRSPRGKNIQ---GGKTLSVSQLELQDSGTWTC 160
Score = 34.6 bits (79), Expect = 0.074
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 7 SRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
RAD L I N +++DS Y CE++
Sbjct: 54 DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE 88
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 45.0 bits (107), Expect = 5e-06
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 11/63 (17%)
Query: 580 GICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVTPDSYECLCS 636
+ + Y+ N C+ NGG +C YECLC
Sbjct: 4 HHHHHPMSD---YDIPTTENLYFQGAMGTNE-CLDN----NGGCSYVCNDLKIGYECLCP 55
Query: 637 LGY 639
G+
Sbjct: 56 DGF 58
Score = 40.8 bits (96), Expect = 2e-04
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGY---SGDHCEKENNMCMKGDVCKNGGMCKVTPDSYE 632
C +C Y C C G+ + CE + + C D C +C Y+
Sbjct: 39 CS--YVCNDLKIG---YECLCPDGFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYK 90
Query: 633 CLCSLGY 639
C C G+
Sbjct: 91 CQCEEGF 97
Score = 39.6 bits (93), Expect = 4e-04
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 142 KHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--YPGACGDGSCQDVDGAMK 199
KH++ + Y E C G C C D+ +
Sbjct: 2 KHHHHHH--------PMSDYDIPTTENLYFQGAMGTNE-CLDNNGGC-SYVCNDLKIGYE 51
Query: 200 CLCPIG---TAGKRCE 212
CLCP G A +RCE
Sbjct: 52 CLCPDGFQLVAQRRCE 67
Score = 35.0 bits (81), Expect = 0.015
Identities = 22/106 (20%), Positives = 28/106 (26%), Gaps = 41/106 (38%)
Query: 134 SCNTCKSSKHNNCIN-----NGLCQD--AATRIGYTCICPPGFSGDRCSVLGEPCYPGAC 186
+ N NG C +IGY C+CP GF
Sbjct: 16 PTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-------------- 61
Query: 187 GDGSCQDVD----------------GAMKCLCPIG----TAGKRCE 212
C+D+D G KC C G K C+
Sbjct: 62 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 28.4 bits (64), Expect = 3.0
Identities = 1/25 (4%), Positives = 3/25 (12%)
Query: 620 NGGMCKVTPDSYECLCSLGYAPPNC 644
Y+ +
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGA 26
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 45.1 bits (107), Expect = 5e-06
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---T 347
F + TKEA G+ TL C +L W K L G ++
Sbjct: 8 PARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKK--GPETLRDGGRYSLKQDGTRCE 63
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L + ++ +DAG Y C + + L V FT+
Sbjct: 64 LQIHDLSVADAGEYSCMCGQERTSAT----LTVRALPARFTEGS 103
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
++W + L+ RY +G L+I + + D+G+Y C G + L
Sbjct: 38 VEWKK-GPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC-GQERTSA----TLT 91
Query: 56 VERM--MFVDGIGPFSG 70
V + F +G GP SG
Sbjct: 92 VRALPARFTEGSGPSSG 108
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 47.8 bits (114), Expect = 7e-06
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQ 351
+ A G +++ + TW K ++ + + +L
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGHYQVIVTRSFTSLV 163
Query: 352 EIKN---SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
DAG YV N+ + L V D VP P ++D S
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VP---DPPRG----VKVSDVS-RDS 214
Query: 409 IELSFKPTDYNG 420
+ L++ +G
Sbjct: 215 VNLTWTEPASDG 226
Score = 44.4 bits (105), Expect = 1e-04
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENT 347
AP F + Y S TL C W + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD----SVPLFTQKP 391
L + + + DA +Y + +N+ +V + L V +P +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM 111
Score = 32.8 bits (75), Expect = 0.45
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 13/54 (24%)
Query: 4 IKWSRADGLPLQ-----RYAEGN----VLRITNARLQDSGKYKCEIQ---GHDS 45
I W + + + ++ +D+G Y + G D
Sbjct: 136 ITWQK-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 4 IKWSRADGLPLQ--------RYAEGNV--LRITNARLQDSGKYKCE 39
+KW R G + + +G L I + D+ Y+
Sbjct: 36 VKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 48.1 bits (114), Expect = 7e-06
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 295 APAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA-FSREN---TLT 349
P F + E + L C +++ W K + + ++ TL
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFKDGICTLL 279
Query: 350 LQEIKNSDAGMYVCKVSNK 368
+ E DAG+Y + +
Sbjct: 280 ITEFSKKDAGIYEVILKDD 298
Score = 41.5 bits (97), Expect = 8e-04
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------AFSRENTLTLQEI 353
V + + C+ E++WSK + + + +T +++
Sbjct: 9 VVVNVDDDGVISLNFECDKMTPKS-EFSWSK--DYVSTEDSPRLEVESKGNKTKMTFKDL 65
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
D G+Y C V++ D I L + +P
Sbjct: 66 GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111
Score = 38.4 bits (89), Expect = 0.008
Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG-----AFSREN---T 347
P + ++ + G L + + N + G R
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF--NEKEIFEGPKYKMHIDRNTGIIE 167
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHF 407
+ ++++++ D G Y ++ + T S +++ V QK + + HF
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNH--STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 408 SIELSFKPTD 417
LS++ T
Sbjct: 226 VEYLSWEVTG 235
Score = 36.1 bits (83), Expect = 0.037
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 4 IKWSRADGLPLQ---RYA-EGNV--LRITNARLQDSGKYKCEIQGHDSFRGSD--YVKLN 55
I W + D + ++ + + L IT +D+G Y+ ++ RG D +KL
Sbjct: 254 IVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD---RGKDKSRLKLV 309
Query: 56 VE 57
E
Sbjct: 310 DE 311
Score = 36.1 bits (83), Expect = 0.043
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGN--VLRITNARLQDSGKYKCEI 40
WS+ D + + R ++GN + + + D G Y C++
Sbjct: 34 FSWSK-DYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDV 77
Score = 30.7 bits (69), Expect = 1.8
Identities = 5/63 (7%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 4 IKWSRADGLPLQ---RY-----AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
+ + + + +Y + + + + +D G Y ++Q + +++
Sbjct: 140 VNYIF-NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG---KATNHST 195
Query: 54 LNV 56
+ +
Sbjct: 196 VVL 198
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 47.8 bits (114), Expect = 7e-06
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 293 NDAPAF--NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSR-- 344
+ P F ++ C + ++ W K + + + R
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYEC----KIGGSPEIKVLWYK--DETEIQESSKFRMS 149
Query: 345 ----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L + + D+G Y C+ N + + L V + P+F +KP
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-PVFRKKP 199
Score = 45.9 bits (109), Expect = 3e-05
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------ENT 347
P F + + G T C+ AP++ TW+K + + G + T
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK--DNREIRPGGNYKMTLVENTAT 62
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
LT+ ++ DAG Y C SN + L V P F +K
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKL 105
Score = 45.1 bits (107), Expect = 5e-05
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN-- 346
+ P F E G+ + L C P + +W K + L G EN
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--DKRELRSGKKYKIMSENFL 247
Query: 347 -TLTLQEIKNSDAGMYVCKVSNK 368
++ + + ++D G Y CK SN
Sbjct: 248 TSIHILNVDSADIGEYQCKASND 270
Score = 36.3 bits (84), Expect = 0.029
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ--------RYAEGNVLRITNARLQDSGKYKCE 39
+ W + D +Q VL + N ++DSG Y CE
Sbjct: 131 VLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Score = 35.9 bits (83), Expect = 0.040
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+ W + D L+ +Y +E + + I N D G+Y+C+
Sbjct: 224 VSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Score = 35.5 bits (82), Expect = 0.050
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ-------RYAEGN-VLRITNARLQDSGKYKCE 39
I W++ D ++ E L + D+G+Y C
Sbjct: 37 ITWAK-DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 288 TPLYSNDAPAFNPVSTK--EAPYGSKITLTCNNDLEA----PVEYTWSK------RSNGH 335
T S+ AP + K E I+L C A + W K R
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLC----PAQGFPAPSFRWYKFIEGTTRKQAV 259
Query: 336 VLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
VL TL +++ D+G Y+C V+N + ++L VT + P
Sbjct: 260 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDP 314
Score = 46.9 bits (111), Expect = 2e-05
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
T+ +G TC +W K +G + E+ L ++ +K D GMY
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKAIG----HSESVLRIESVKKEDKGMY 368
Query: 362 VCKVSNK 368
C V N
Sbjct: 369 QCFVRND 375
Score = 46.5 bits (110), Expect = 2e-05
Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 11/108 (10%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK---------RSNGHVLPFGAFS 343
P F P + + + + C E W + + G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ A +Y C N+ ++ + + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Score = 40.3 bits (94), Expect = 0.002
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 295 APAFN-PVSTKEAPYGSKITLTCN---NDLEAPVEYTWSKRSNGHVLPFGAFSR------ 344
A + V+ + G+ + C + +W + P +
Sbjct: 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 345 ENTLTLQEIKNSDA-GMYVCKVSNK--DMTVEIPSILLVTDSVPLFTQKPLSYLALPTLT 401
L ++E+ D Y C+ ++ T + + + P+ + P + +
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222
Query: 402 DAHLHFSIEL 411
+ + +I L
Sbjct: 223 ELMVAHTISL 232
Score = 38.8 bits (90), Expect = 0.007
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 4 IKWSRADG-LPLQRYAE--------GNVLRITNARLQDSGKYKCE---IQGHDSFRGSDY 51
+W + ++ L I +A ++DSGKY C G +S
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE---- 299
Query: 52 VKLNVE 57
L V
Sbjct: 300 TVLTVT 305
Score = 36.8 bits (85), Expect = 0.027
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKC 38
+ W + DG + +VLRI + + +D G Y+C
Sbjct: 339 VSWMK-DGKAIGH--SESVLRIESVKKEDKGMYQC 370
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 46.0 bits (109), Expect = 1e-05
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 295 APAFNPV---STKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA----FS 343
PA + A G ++T +C A P +W + NG ++
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSC----RASGSPEPAISWFR--NGKLIEENEKYILKG 55
Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
LT++ I NSD G YVC+ +NK E + L V P Q
Sbjct: 56 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-PHIIQLK 102
Score = 43.3 bits (102), Expect = 9e-05
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSREN---- 346
P + + ++TL C +A P+ E TW + +G G S +
Sbjct: 95 QPHIIQLKNETTYENGQVTLVC----DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 347 -------TLTLQEIKNSDAGMYVCKVSNK 368
+L ++++K SD+G Y C+ +++
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Score = 38.3 bits (89), Expect = 0.004
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 4 IKWSRADGLPLQ---RY---AEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKL 54
I W R +G ++ +Y L + N D G Y C G D + L
Sbjct: 36 ISWFR-NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ----AFL 90
Query: 55 NV 56
V
Sbjct: 91 QV 92
Score = 32.5 bits (74), Expect = 0.38
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 4 IKWSRA-DGLPL---QRYAEGNV----------LRITNARLQDSGKYKCEIQGHDSFRGS 49
I W RA DG + +G + L I + +L DSG+Y CE S G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA---SRIGG 182
Query: 50 DY--VKLNVE 57
+ L++E
Sbjct: 183 HQKSMYLDIE 192
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 47.5 bits (112), Expect = 1e-05
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 144 NNC-INNGLCQD--AATRIGYTCICPPGF----SGDRCSVLGEPCYPGACGDGSCQDVDG 196
NC +NNG C R C C G+ G C + E G C C + +G
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC-SQGCTNSEG 62
Query: 197 AMKCLCPIG 205
A +C C G
Sbjct: 63 AFQCWCEAG 71
Score = 42.8 bits (100), Expect = 3e-04
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG----MCKV 626
C C C+C TGY + C + C G C
Sbjct: 6 CNVNNGGCAQKCQMIR---GAVQCTCHTGYRLTEDGR---TCQDVNECAEEGYCSQGCTN 59
Query: 627 TPDSYECLCSLGY 639
+ +++C C GY
Sbjct: 60 SEGAFQCWCEAGY 72
Score = 32.1 bits (72), Expect = 0.88
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF---SGDRCS 175
NN LC + YTC CP GF + C+
Sbjct: 344 PAGKNRCGDNNGGCTHLCLPSGQ--NYTCACPTGFRKINSHACA 385
Score = 30.5 bits (68), Expect = 2.5
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGY 639
++C N C C++ + +C C GY
Sbjct: 4 ENCNVNNGGCA--------QKCQMIRGAVQCTCHTGY 32
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 45.9 bits (109), Expect = 1e-05
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 19/112 (16%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSR----- 344
F VS +E G + C +W + + + +R
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVC----RVSSSPAPAVSWLY--HNEEVTTISDNRFAMLA 55
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP---LFTQKPLS 393
N L + I SD G+Y C+ + ++V +VP QK +
Sbjct: 56 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 107
Score = 44.4 bits (105), Expect = 4e-05
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 293 NDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN 346
N PA A G ++T +C +W + NG ++ N
Sbjct: 94 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGSN 151
Query: 347 -TLTLQEIKNSDAGMYVCKVSNK 368
LT++ I NSD G YVC+ +NK
Sbjct: 152 TELTVRNIINSDGGPYVCRATNK 174
Score = 38.2 bits (89), Expect = 0.004
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-----RYA--EGNVLRITNARLQDSGKYKCE 39
+ W + R+A N L+I N D G Y+CE
Sbjct: 34 VSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Score = 36.7 bits (85), Expect = 0.014
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 4 IKWSRADGLPLQ---RY---AEGNVLRITNARLQDSGKYKCE 39
I W R +G ++ +Y L + N D G Y C
Sbjct: 130 ISWFR-NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 45.6 bits (108), Expect = 1e-05
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMK 614
C C G C T + Y CSC G+ G CE + K
Sbjct: 120 ASCQDMSCSKQGECLETIGN---YTCSCYPGFYGPECEYVRDDDDK 162
Score = 36.7 bits (85), Expect = 0.011
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 133 DSCNT-----CK--SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+ C C S + +C G C + YTC C PGF G C
Sbjct: 107 EHCLKKKHALCYTASCQDMSCSKQGECLETIG--NYTCSCYPGFYGPEC 153
Score = 34.0 bits (78), Expect = 0.077
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 605 CEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
C + C G C T +Y C C G+ P C
Sbjct: 117 CYT---ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 45.9 bits (109), Expect = 1e-05
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 21/112 (18%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
AP F P+ + GS T PV E +W + +G V+
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEA----HISGFPVPEVSWFR--DGQVISTSTLPGVQISF 58
Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKP 391
LT+ + +++G Y K +N + LLV P F Q+
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRL 110
Score = 38.2 bits (89), Expect = 0.004
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA---FSREN 346
P F + + GS++ L P + + +G + S+E
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQV----RVTGIPTPVVKFYR--DGAEIQSSLDFQISQEG 156
Query: 347 ---TLTLQEIKNSDAGMYVCKVSNK 368
+L + E D+G Y +N
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNS 181
Score = 37.0 bits (86), Expect = 0.013
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+K+ R DG +Q + EG++ L I A +DSG Y
Sbjct: 135 VKFYR-DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Score = 34.7 bits (80), Expect = 0.066
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Query: 4 IKWSRADGLPLQ---------RYAEGN-VLRITNARLQDSGKYKCE---IQGHDSFRGSD 50
+ W R DG + +++G L I +SG+Y + G +
Sbjct: 37 VSWFR-DGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST--- 92
Query: 51 YVKLNVE 57
+L V+
Sbjct: 93 -AELLVK 98
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 47.1 bits (111), Expect = 1e-05
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 286 SATPLYSNDAPAFNPV-STKEAPYGSKITLTCNN-DLEAPVEYTWSKRSNGHVLPFGA-- 341
+ P+ P I L C + TW K N L
Sbjct: 119 GIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYK--NNQELIIDGTK 176
Query: 342 FSREN-TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV 384
+S+ L + + D+G Y C V D+ ++ ++ +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Score = 44.8 bits (105), Expect = 7e-05
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 14/93 (15%)
Query: 302 STKEAPYGSKITLTC----NNDLEAPVEYTWSK---------RSNGHVLPFGAFSRENTL 348
G +TC + L V W +L E TL
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295
Query: 349 TLQEIKNSDAGM-YVCKVSNKDMTVEIPSILLV 380
+ + G Y C+ N + + +++
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 41.7 bits (97), Expect = 6e-04
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 9/128 (7%)
Query: 273 IREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWS--- 329
I E + R + + N + F A G + C ++ + + ++
Sbjct: 8 ITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKD 67
Query: 330 -----KRSNGHVLPFGAFSRENTLTLQEIKNSDAG-MYVCKVSNKDMTVEIPSILLVTDS 383
++ P + L + ++D+ Y+C V+ K+ +
Sbjct: 68 NVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127
Query: 384 VPLFTQKP 391
P +
Sbjct: 128 PPSCIPET 135
Score = 36.3 bits (83), Expect = 0.035
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 4 IKWSRADGLPL-----QRYAEGNVLRITNARLQDSGKYKCE 39
I W + + L + G L I N L+DSG+Y C
Sbjct: 161 ITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCY 200
Score = 35.6 bits (81), Expect = 0.065
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 1 NAYIKWSRADG--LPLQRYAEGNVLRITNARLQDSG-KYKCEIQGHDSFRGSDYVKLNV 56
+ + W + PL R + L I N DS +Y C + + V+ ++
Sbjct: 67 DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHI 125
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 47.4 bits (112), Expect = 1e-05
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 11/109 (10%)
Query: 309 GSKITLTCNNDLEA-------PVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIKNSD 357
G + L C + TW K + +P +R + L L D
Sbjct: 33 GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQED 92
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+G YVC N ++ L V ++ F L T L
Sbjct: 93 SGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLV 141
Score = 45.1 bits (106), Expect = 7e-05
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 20/111 (18%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPV-----EYTWSKRSNGHVLP-----FGAFSRENTL 348
+ + L C + E + W K + +L F + L
Sbjct: 125 FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK--DSLLLDKDNEKFLSVRGTTHL 182
Query: 349 TLQEIKNSDAGMYVCKVSNKDM--------TVEIPSILLVTDSVPLFTQKP 391
+ ++ DAG Y C ++ ++E+ +++P+
Sbjct: 183 LVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL 233
Score = 37.0 bits (85), Expect = 0.022
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 4 IKWSRADGLPLQ-------RYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVK 53
I+W + D L L L + + L+D+G Y+C + + ++
Sbjct: 157 IQWYK-DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Query: 54 LNV 56
L +
Sbjct: 216 LRI 218
Score = 37.0 bits (85), Expect = 0.024
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 4 IKWSRADGLPLQR--------YAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
+ W + + +A+ L + A +DSG Y C + + D + +
Sbjct: 57 LTWHK-NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR---NASYCDKMSIE 112
Query: 56 VERMMFVDGIGPFSGESQGAFQGLD 80
+ D PF Q
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTS 137
Score = 35.8 bits (82), Expect = 0.045
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 22/99 (22%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCN---NDLEAPVEYTWSKR---------------- 331
P +P+ T A GS++T+ C W
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282
Query: 332 -SNGHVLPFGAFSRENTLTLQEIKNSDAGM-YVCKVSNK 368
E L + D M + C V N
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 14/99 (14%)
Query: 302 STKEAPYGSKITLTCNNDLEA---PVEYTWSKRSNGHVLPFGAFSR------ENTLTLQE 352
S E G TC A P W G + + LT+
Sbjct: 12 SKVELSVGESKFFTC----TAIGEPESIDWYNP-QGEKIISTQRVVVQKEGVRSRLTIYN 66
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
DAG+Y C+ ++ + +++L F +
Sbjct: 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV 105
Score = 46.0 bits (109), Expect = 3e-05
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 19/117 (16%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
F VS +E G + C P +W + + + +R
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVC----RVSSSPAPAVSWLY--HNEEVTTISDNRFAMLA 151
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP---LFTQKPLSYLALP 398
N L + I SD G+Y C+ + ++V +VP QK + A
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208
Score = 41.7 bits (98), Expect = 5e-04
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 295 APAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN-T 347
PA A G ++T +C +W + NG ++ N
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGSNTE 249
Query: 348 LTLQEIKNSDAGMYVCKVSNK 368
LT++ I NSD G YVC+ +NK
Sbjct: 250 LTVRNIINSDGGPYVCRATNK 270
Score = 40.2 bits (94), Expect = 0.002
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 4 IKWSRADGLPL---QRYA-----EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
I W G + QR + L I NA ++D+G Y+C+ V L
Sbjct: 35 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
Query: 56 VE 57
+
Sbjct: 95 IY 96
Score = 37.9 bits (88), Expect = 0.009
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 4 IKWSRADGLPLQ-----RYA--EGNVLRITNARLQDSGKYKCE 39
+ W + R+A N L+I N D G Y+CE
Sbjct: 130 VSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Score = 37.1 bits (86), Expect = 0.020
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 4 IKWSRADGLPLQ---RY---AEGNVLRITNARLQDSGKYKCE 39
I W R +G ++ +Y L + N D G Y C
Sbjct: 226 ISWFR-NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 266
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 283 DTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA- 341
S +++ + PA V + G+ TL+C +A E TW K +G L +
Sbjct: 3 SGSSGKVVFAKEQPAHREVQAEA---GASATLSCEVA-QAQTEVTWYK--DGKKLSSSSK 56
Query: 342 --FSREN---TLTLQEIKNSDAGMYVCKVSN 367
L +Q+ ++AG Y C+
Sbjct: 57 VRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87
Score = 35.5 bits (82), Expect = 0.012
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+ W + DG L + A G L + A ++G+Y CE
Sbjct: 42 VTWYK-DGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 47.4 bits (112), Expect = 2e-05
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 21/94 (22%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS-------VLGEP------- 180
C +C + C D+ T C C +G RC L
Sbjct: 438 CKSCACNPLGTIPGGNPC-DSETG---YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC 493
Query: 181 -CYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
C G + SC + G +C C G++C +
Sbjct: 494 DCDLGGALNNSCSEDSG--QCSCLPHMIGRQCNE 525
Score = 46.6 bits (110), Expect = 3e-05
Identities = 20/112 (17%), Positives = 30/112 (26%), Gaps = 34/112 (30%)
Query: 130 VGVDSCNTCK----------SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC----- 174
+ N C+ + + + A + C C G+RC
Sbjct: 370 RDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQ----CRCKLHVEGERCDVCKE 425
Query: 175 ------SVLGEPCYPGAC-------GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
+ C AC G C G C C G+RC+Q
Sbjct: 426 GFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGY--CYCKRLVTGQRCDQ 475
Score = 37.4 bits (86), Expect = 0.021
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 33/110 (30%)
Query: 135 CNTCKSSKH-NNCINNGLCQDAATRIGYTC--ICPPGFSGDRCSV--------------L 177
C C ++H ++C + A + C G C
Sbjct: 315 CKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRD 374
Query: 178 GEPCYPGACG--------------DGSCQDVDGAMKCLCPIGTAGKRCEQ 213
C P C D S + G +C C + G+RC+
Sbjct: 375 PNLCEPCTCDPAGSENGGICDGYTDFSVGLIAG--QCRCKLHVEGERCDV 422
Score = 37.0 bits (85), Expect = 0.026
Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 26/107 (24%)
Query: 562 CSDLESSPVCAPKPCQNYG-----ICYPTDTSERGY---NCSCLTGYSGDHCEK------ 607
D+ +C P C G IC G C C G+ C+
Sbjct: 369 ERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFY 428
Query: 608 ----------ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
++ C G C ++ C C C
Sbjct: 429 DLSAEDPYGCKSCACNPLGTIPGGNPCD--SETGYCYCKRLVTGQRC 473
Score = 32.4 bits (73), Expect = 0.79
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 28/96 (29%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSV-----LGEPCYPG---------AC---GD 188
+G+ ++ + C+C G C + P P C
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 323
Query: 189 GSCQDVDGAMKCL-----------CPIGTAGKRCEQ 213
S D A+ C T G+ CEQ
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQ 359
Score = 30.4 bits (68), Expect = 2.4
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 24/92 (26%)
Query: 571 CAPKPCQNYGICYPTDTSE-RGYNCSCLTGYSGDHCEKENNMCMKG--------DVCK-- 619
C C G + + C C +G C++ C+ D C+
Sbjct: 438 CKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ----CLPQHWGLSNDLDGCRPC 493
Query: 620 -------NGGMCKVTPDSYECLCSLGYAPPNC 644
C + DS +C C C
Sbjct: 494 DCDLGGALNNSC--SEDSGQCSCLPHMIGRQC 523
Score = 28.9 bits (64), Expect = 8.3
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
CAP N + +C C G +CE
Sbjct: 263 CAPVDGVNEEVEGM-----VHGHCMCRHNTKGLNCEL 294
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 45.8 bits (108), Expect = 2e-05
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 295 APAFNPVS-TKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN--TLTL 350
P+ G+ L C + ++ W K S+ +P + +++
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
Query: 351 QEIKNSDAGMYVCKVSNK--------DMTVEIPS 376
+ + +G Y C V N+ + V PS
Sbjct: 181 KNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214
Score = 40.4 bits (94), Expect = 9e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 318 NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSI 377
+ + Y + H S + ++ + ++ SD G Y CKV +
Sbjct: 56 SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115
Query: 378 LLVTDSVPLFTQKPLS 393
L V P T+ +
Sbjct: 116 LTVL-VKPSGTRCFVD 130
Score = 35.8 bits (82), Expect = 0.030
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 4 IKWSRADG-----LPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
+W + P V+ + NA + SG Y C +Q
Sbjct: 154 FEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQ 196
Score = 33.5 bits (76), Expect = 0.20
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ +TN +L D G Y+C+++ + L V
Sbjct: 86 INVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTV 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 2e-05
Identities = 45/281 (16%), Positives = 76/281 (27%), Gaps = 102/281 (36%)
Query: 622 GMCKVTPDSYE---------------CLCSLGYAPPNCAKRVSIGSEVHFLG-------E 659
GM D Y+ + G++ + + +HF G E
Sbjct: 1630 GMGM---DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 660 GYVELKKELIEERR----------NEETIAFDFVTDDKNALLL-WNGQP-----SY---- 699
Y + E I + + NE + ++ F +K L QP
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 700 ---KNGIGREFIAVAVVNGY-L-EYS--------YDLGDGV--VTI--KFSKKPV-NDGI 741
G+ A G+ L EY+ + V V + V D +
Sbjct: 1746 DLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 742 KHS------VNVTRINKFGSLEVDSVIVGK-----GE--------SPGSQDVINTRGNIY 782
S +N R+ S E +V + G Q V
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA------- 1855
Query: 783 LGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSAS 823
G R + ++ ++ I +Q I + S S
Sbjct: 1856 -AGDL--------RALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 44.3 bits (104), Expect = 2e-04
Identities = 81/474 (17%), Positives = 148/474 (31%), Gaps = 162/474 (34%)
Query: 388 TQKPLSYLALPTLTDAHLHFSIELSFK-PTDYNGLIMYTGDSNMKSYKGKGDFVS----- 441
+ +PL TL+ H S+E PT + S ++ F
Sbjct: 5 STRPL------TLS----HGSLEHVLLVPTA-----SFFIASQLQE-----QFNKILPEP 44
Query: 442 ---FGLEDGYP------VFRFDVGLVV-LRSKVTLVPHEWVVVTIIKDFKEGKL------ 485
F +D P V +F +G V L + + V+ + +F+ L
Sbjct: 45 TEGFAADDE-PTTPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 486 SVGGEPLIVGSTPGEKLQVLNLRTPLY-----LGGYNIYHVTPS-LSVEVTEGFHGCIST 539
++ + L T K + L ++ Y + + S L V EG ++
Sbjct: 103 ALAAKLLQENDTTLVKTKEL-IKN--YITARIMAKRPFDKKSNSALFRAVGEGNAQLVA- 158
Query: 540 IDVLG---------SEL------------DLINSAVDSANIMDCSDLESSPVCAPKPCQN 578
+ G EL DLI + ++ S+L + + A K
Sbjct: 159 --IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAEKVFT- 210
Query: 579 YGI------CYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYE 632
G+ P++T ++ Y S S C G+ ++ Y
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIP--IS----------------CPLIGVIQLA--HYV 250
Query: 633 CLC-SLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNAL- 690
LG+ P + G+ H +G V I E + E F + A+
Sbjct: 251 VTAKLLGFTPGELRSYLK-GATGH--SQGLVTAV--AIAETDSWE----SFFVSVRKAIT 301
Query: 691 -LLWNG---QPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV----VTIK-FSKKPVNDGI 741
L + G +Y + +++ E S + +GV ++I +++ V
Sbjct: 302 VLFFIGVRCYEAY----PNTSLPPSIL----EDSLENNEGVPSPMLSISNLTQEQV---Q 350
Query: 742 KHSVNVTRINKFGSLEVDSVIVGKGESPGSQDV----INTRGNIYLGGTPNMDL 791
+ V + N P + V +N N+ + G P L
Sbjct: 351 DY---VNKTNS--------------HLPAGKQVEISLVNGAKNLVVSGPP-QSL 386
Score = 39.6 bits (92), Expect = 0.005
Identities = 31/206 (15%), Positives = 53/206 (25%), Gaps = 91/206 (44%)
Query: 225 GS---------YLAYPTPK---------TMRKFKVSL----RLNPRDVRDGIILYSGQSD 262
GS Y + + S+ NP ++ I + G+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL---TIHFGGEK- 1680
Query: 263 DGLGDFISLAIREKHMEFRFDTGSATPLYSNDA-PAFNPVSTK---EAPYGSKITLTCNN 318
IRE + F+T L + N ST + G ++ T
Sbjct: 1681 -------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-LLSAT--- 1729
Query: 319 DLEAPVEYT------WSK------RSN----------GH-------------VLPFGA-- 341
++T K +S GH V+ +
Sbjct: 1730 ------QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
Query: 342 ---FSR----ENTLTLQEIKNSDAGM 360
F R + + E+ S+ GM
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGM 1809
Score = 36.6 bits (84), Expect = 0.048
Identities = 55/324 (16%), Positives = 90/324 (27%), Gaps = 115/324 (35%)
Query: 44 DSFRGSDYVKLNVERMMFVDGIGPFSG-ESQGAFQGLDLSELVYIGAVPDFGEIHPSAGF 102
+SF S + ++F F G A+ L + ++ + E PS
Sbjct: 290 ESFFVSVRKAI---TVLF------FIGVRCYEAYPNTSLPPSILEDSL-ENNEGVPSPML 339
Query: 103 SNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTC-KSSKHNNCINNGLCQDAATRIGY 161
S +S L + V+ V+ N+ + K + L
Sbjct: 340 S------ISNLT---------QEQVQDY-VNKTNSHLPAGKQ---VEISL---------- 370
Query: 162 TCICPPGFSGDRCSVL-GEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQP 220
+G + V+ G P Q + G L A +Q +I
Sbjct: 371 -------VNGAKNLVVSGPP-----------QSLYGLNLTLRKA-KAPSGLDQS-RI--- 407
Query: 221 AFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGII-------LYSGQSDDGLGDFISLAI 273
P + RK K S R P + L SD D + +
Sbjct: 408 ------------PFSERKLKFSNRFLP-------VASPFHSHLLVPASDLINKDLVKNNV 448
Query: 274 REKHMEFR---FDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK 330
+ + +DT + L GS + + PV+ W
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLS--------------GSISERIVDCIIRLPVK--WET 492
Query: 331 RSNG---HVLPFG--AFSRENTLT 349
+ H+L FG S LT
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLT 516
Score = 36.2 bits (83), Expect = 0.058
Identities = 39/272 (14%), Positives = 74/272 (27%), Gaps = 94/272 (34%)
Query: 6 WSRADGLPLQRYAEG-NVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMF--- 61
W+RAD Y G ++L I + ++ + H ++ N M+F
Sbjct: 1646 WNRADNHFKDTY--GFSILDI----VINNPV---NLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 62 VDGIGPFSGESQGAFQGLDLSELVYI--------------------------------GA 89
VDG +++ F+ ++ Y G
Sbjct: 1697 VDG----KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 90 VPD---F-----GEIHPSA--------GFSNGFKGCVS-RLKYNKTEFELFKMAVERVGV 132
+P F GE +A + + V R + ++ G+
Sbjct: 1753 IPADATFAGHSLGEY--AALASLADVMSIESLVE-VVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY--PG---ACG 187
+ N + Q+A + +G ++ Y
Sbjct: 1810 IAIN-------PGRVAASFSQEALQYV---VERVGKRTGWLVEIV---NYNVENQQYVAA 1856
Query: 188 DGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQ 219
G + +D L I QKI I++
Sbjct: 1857 -GDLRALDTVTNVLNFIKL------QKIDIIE 1881
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 43.9 bits (104), Expect = 2e-05
Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 12/72 (16%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVT 627
C C+ C + Y C C G++ E C C
Sbjct: 7 CFRANCEY--QC--QPLDQTSYLCVCAEGFAPIPHEPHRCQM----FCNQTACPADCDPN 58
Query: 628 PDSYECLCSLGY 639
C C GY
Sbjct: 59 T-QASCECPEGY 69
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMKGDVC 618
C + C P C +C C GY G C + + C G C
Sbjct: 42 CQMFCNQTAC-PADCDPNT----------QASCECPEGYILDDGFICT-DIDECENGGFC 89
Query: 619 KNGGMCKVTPDSYECLCSLGY 639
G+C P ++EC+C
Sbjct: 90 --SGVCHNLPGTFECICGPDS 108
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDA-ATRIGYTCICPPGFS---GDRCSVLGEPCYPGACGD 188
+ C+ N C +C CP G+ G C+ + E G C
Sbjct: 37 HEPHRCQ-----MFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFC-S 90
Query: 189 GSCQDVDGAMKCLCPIG-----TAGKRC 211
G C ++ G +C+C G C
Sbjct: 91 GVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 36.6 bits (85), Expect = 0.006
Identities = 16/84 (19%), Positives = 21/84 (25%), Gaps = 12/84 (14%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
VD C C Y C+C GF+ + +
Sbjct: 4 VDPCFRANCE--YQCQPLDQT-------SYLCVCAEGFAPIPHEPHRCQMFCNQTACPAD 54
Query: 192 QDVDGAMKCLCPIG---TAGKRCE 212
D + C CP G G C
Sbjct: 55 CDPNTQASCECPEGYILDDGFICT 78
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 295 APAFNPV-STKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------ 346
P+ V A G++ LTC+ D P EYTW K +G V+P S
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK--DGIVMPTNPKSTRAFSNSSY 164
Query: 347 -------TLTLQEIKNSDAGMYVCKVSNK 368
L + SD G Y C+ N
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNG 193
Score = 38.4 bits (89), Expect = 0.005
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 16/70 (22%)
Query: 4 IKWSRADGLPLQRYA---------------EGNVLRITNARLQDSGKYKCEIQ-GHDSFR 47
++W G + + + +D+G Y C + +
Sbjct: 36 VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSY 95
Query: 48 GSDYVKLNVE 57
G VKL V
Sbjct: 96 GEVKVKLIVL 105
Score = 38.0 bits (88), Expect = 0.006
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-------------NTLTLQ 351
P + + L+C + W K G ++ + +T +
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEW-KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV-PLFTQKP 391
+ D G Y C VS + + + V P
Sbjct: 74 SVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN 114
Score = 32.6 bits (74), Expect = 0.33
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 16/51 (31%)
Query: 4 IKWSRADGLPLQ---------------RYAEGNVLRITNARLQDSGKYKCE 39
W + DG+ + L D+G+Y CE
Sbjct: 140 YTWFK-DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.5 bits (103), Expect = 2e-05
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIKNSDAGMYVC 363
G ++ L + + W+K G L +++ SD+G Y
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTK--GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96
Query: 364 KVSNKDMTVEIPSILLVTD 382
V ++M + V +
Sbjct: 97 SVQIENMKDTATIRIRVVE 115
Score = 35.8 bits (83), Expect = 0.010
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 4 IKWSRADGLPLQ------RYAEGN-VLRITNARLQDSGKYKCEIQ 41
+ W++ G PL R ++ + V + A DSG+Y+ +Q
Sbjct: 56 VVWTK-GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 44.9 bits (106), Expect = 2e-05
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
TLTC E + +G L + + S + + C NK
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQ--DGKHLKL-----SQRVITHKWTTSLSAKFKCTAGNK 167
Score = 37.9 bits (88), Expect = 0.005
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 15/93 (16%)
Query: 309 GSKITLTCNN-DLEAPV-EYTWSKRSNGHVL--------PFGAFSREN-----TLTLQEI 353
G I L + + + + W K S+ + F TL ++ +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPL 386
K D +Y + + + I + +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV 106
Score = 34.5 bits (79), Expect = 0.069
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 23 LRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNV 56
L+I + + D YK I L +
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102
Score = 27.9 bits (62), Expect = 8.8
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
+ + DG L+ + S K+KC
Sbjct: 132 LNLYQ-DGKHLK---LSQRVITHKWTTSLSAKFKCTAG 165
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 43.8 bits (103), Expect = 2e-05
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 309 GSKITLTCNNDLEAPVE-YTWSKRSNGHVLPFGAFSREN----------------TLTLQ 351
GS +TL + L + TW + ++ + + + L +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL-VTDSVP 385
+++ D Y+ +V K + I L V D VP
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
Score = 37.2 bits (86), Expect = 0.004
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I+ + +D+ Y + +KL V
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 43.1 bits (102), Expect = 2e-05
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLP----FGAFSRE 345
AP + + G I ++C A P + W K + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSC----TASGNPPPQIMWFK--DNETLVEDSGIVLKDGN 63
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFT 388
LT++ ++ D G+Y C+ + ++ + ++ + T
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII-EGAQEKT 105
Score = 35.0 bits (81), Expect = 0.018
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 4 IKWSRADGLPLQ-----RYAEGN-VLRITNARLQDSGKYKCE 39
I W + D L +GN L I R +D G Y C+
Sbjct: 42 IMWFK-DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 45.2 bits (107), Expect = 2e-05
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA---FSREN 346
P T+ G + +TC +A P W K N + ++
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTC----KAIGNPTPNIYWIK--NQTKVDMSNPRYSLKDG 163
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L ++ + D G Y C N T + L + T+
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHH 208
Score = 40.2 bits (94), Expect = 0.001
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 18/99 (18%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLP-----FGAFSRENTLTLQEIKN----SDAG 359
G + C + P W K NG + + + +++ I+ D
Sbjct: 21 GGVASFYCAARGDPPPSIVWRK--NGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 360 MYVCKVSNK-------DMTVEIPSILLVTDSVPLFTQKP 391
Y C N D T+ I P+ TQ P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP 117
Score = 39.4 bits (92), Expect = 0.002
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 4 IKWSRADGLPLQ-----RYAEGNVLRITNARLQDSGKYKCE 39
I W + + + + L+I N+R +D GKY+C
Sbjct: 142 IYWIK-NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 46.1 bits (109), Expect = 2e-05
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSK-----RSNGHVLPFGAFSREN 346
P P + + C A P +W K R + ++
Sbjct: 125 PERMDKKLLAVPAANTVRFRC----PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+L ++ + SD G Y C V NK ++ L V + P +P+ LP A L
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLG 237
Query: 407 FSIELSFKPT 416
+E K
Sbjct: 238 SDVEFHCKVY 247
Score = 44.6 bits (105), Expect = 9e-05
Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 7/129 (5%)
Query: 294 DAPAFNPVSTKE--APYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN--TL 348
+ P P ++ G + L+C P+ W K +G L L
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK--DGTGLVPSERVLVGPQRL 63
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
+ + D+G Y C+ + S+ + + + +++
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 409 IELSFKPTD 417
Sbjct: 124 RPERMDKKL 132
Score = 41.1 bits (96), Expect = 0.001
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 4 IKWSRADGLPLQ---RYAEGN-VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERM 59
W + DG L R G L++ NA +DSG Y C + V++
Sbjct: 41 TVWVK-DGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
Query: 60 MFVDGIGPFSGESQGAFQG 78
D G E G G
Sbjct: 100 SGDDEDGEDEAEDTGVDTG 118
Score = 37.3 bits (86), Expect = 0.019
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 17/103 (16%)
Query: 304 KEAPYGSKITLTCNNDLEAPVEYTWSK--RSNGHVLPFGAFSR---------------EN 346
+ A GS + C +A W K NG +
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQ 389
L+L + DAG Y C N + L+V + +
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 34.6 bits (79), Expect = 0.13
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPL---------QRYAEGNVLRITNARLQDSGKYKCE 39
I W + +G + + L + + D G Y C
Sbjct: 155 ISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
Score = 31.9 bits (72), Expect = 0.81
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 18 AEGNVLRITNARLQDSGKYKC 38
E VL + N +D+G+Y C
Sbjct: 288 KELEVLSLHNVTFEDAGEYTC 308
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 43.7 bits (103), Expect = 3e-05
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 27/100 (27%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSG---------------DHCEKENNMCMKG 615
CA C C C C G+S + C + +
Sbjct: 5 CAR-WCPQDSSCVNA------TACRCNPGFSSFSEIITTPMETCDDINECATLSKVS--- 54
Query: 616 DVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVH 655
C C T SY+C+CS GY P + AK SE
Sbjct: 55 --CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENT 92
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 16/84 (19%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD------- 188
N C + +C C + T Y C+C PG+ + + C D
Sbjct: 45 NECATLSKVSCGKFSDCWN--TEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 189 -------GSCQDVDGAMKCLCPIG 205
C + G+ C C G
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPG 126
Score = 40.2 bits (94), Expect = 5e-04
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 27/88 (30%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSG------------------DHCEKENNMCMKGD 616
C + C+ T+ S Y+C C GY D C + C
Sbjct: 54 SCGKFSDCWNTEGS---YDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSST 110
Query: 617 VCKNGGMCKVTPDSYECLCSLGYAPPNC 644
VC N T SY C C G+ P +
Sbjct: 111 VCFN------TVGSYSCRCRPGWKPRHG 132
Score = 35.2 bits (81), Expect = 0.023
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 25/78 (32%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSG---------------DRCSVLGEPCYPGACGD 188
C + C + C C PGFS + C+ L + CG
Sbjct: 7 RWCPQDSSCVN-----ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVS----CGK 57
Query: 189 GS-CQDVDGAMKCLCPIG 205
S C + +G+ C+C G
Sbjct: 58 FSDCWNTEGSYDCVCSPG 75
Score = 32.9 bits (75), Expect = 0.16
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK 619
C + +C+ T S Y+C C G+ H K VC+
Sbjct: 105 QCDSSTVCFNTVGS---YSCRCRPGWKPRHGIPN---NQKDTVCE 143
Score = 31.3 bits (71), Expect = 0.53
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD 172
C S +H C ++ +C + T Y+C C PG+
Sbjct: 99 CSSGQHQ-CDSSTVCFN--TVGSYSCRCRPGWKPR 130
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----E 345
S+ P + + L C + +W K G P G R +
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK--EGFTFP-GRDPRATIQEQ 61
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
TL ++ ++ SD G Y C ++ ++L VT+S
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 38.9 bits (91), Expect = 6e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 4 IKWSRADGLPLQ----RYA--EGNVLRITNARLQDSGKYKC 38
I W + +G R E L+I N R+ D+G Y C
Sbjct: 40 ISWLK-EGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTC 79
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 46.0 bits (108), Expect = 3e-05
Identities = 38/176 (21%), Positives = 58/176 (32%), Gaps = 15/176 (8%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF--SGDRCSVLGEPCY-PGACGDGSCQ 192
N C NN + +C D +IGY C+CP GF R + C P C C
Sbjct: 1 NECLD---NNGGCSHVCND--LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC-SQLCV 54
Query: 193 DVDGAMKCLCPIGTA----GKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNP- 247
+++G KC C G K C+ I F + + T + L
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
Query: 248 -RDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVS 302
+ SD S + H +DT + + + D A + +
Sbjct: 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170
Score = 44.1 bits (103), Expect = 1e-04
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGY--SGDHCEKENNMCMKGDVCKNGGMCKVTP 628
C +C GY C C G+ ++ + C D C +C
Sbjct: 3 CLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLE 57
Query: 629 DSYECLC 635
Y+C C
Sbjct: 58 GGYKCQC 64
Score = 29.0 bits (64), Expect = 6.4
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPN 643
+ C N C +C YECLC G+
Sbjct: 1 NECLDNNGGCSH--------VCNDLKIGYECLCPDGFQLVA 33
Score = 29.0 bits (64), Expect = 6.6
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 108 GCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLC----QDAATRIGYTC 163
V+ L N E + N C+ + +N LC Q +TC
Sbjct: 322 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC 381
Query: 164 ICPPGFS 170
CP G
Sbjct: 382 ACPDGML 388
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 45.5 bits (107), Expect = 3e-05
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN---------TLTLQEIKNSDAG 359
G ITL C V + W+ + L + + D+G
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 360 MYVCKVSNK 368
Y C V+
Sbjct: 256 TYTCNVTES 264
Score = 45.1 bits (106), Expect = 5e-05
Identities = 18/100 (18%), Positives = 24/100 (24%), Gaps = 14/100 (14%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIK 354
P S LTC W + P ++ LTL +
Sbjct: 6 PGPELVLNVSSTFVLTC----SGSAPVVWER--MSQEPPQEMAKAQDGTFSSVLTLTNLT 59
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILL---VTDSVPLFTQKP 391
D G Y C ++ L V D F
Sbjct: 60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPND 99
Score = 39.7 bits (92), Expect = 0.003
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 4 IKWSRADGLPLQRYAE------GNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ W R P Q A+ +VL +TN D+G+Y C + +L +
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Score = 37.4 bits (86), Expect = 0.016
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
++IT+ C T ++ LP + + + Y+CK +
Sbjct: 110 ITEITIPCRVTDPQL-VVTLHEKKGDVALPVPYDHQRGFSGI-----FEDRSYICKTTIG 163
Query: 369 DMTVEIPSILLVTDSVPLFT 388
D V+ + + V
Sbjct: 164 DREVDSDAYYVYRLQVSSIN 183
Score = 35.1 bits (80), Expect = 0.080
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 6 WSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNV 56
D L Y ++L I +A L+DSG Y C + + + + + V
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 46.2 bits (109), Expect = 4e-05
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNC-SCLTGYSGDH--------CEKENNMCMKGDVCKNG 621
C PC C + + ++C C G+ G+ C ++C
Sbjct: 6 CLSNPCFPGAQC--SSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDIC---FSTSKV 60
Query: 622 GMCKVTPDSYECL-CSLGY 639
C T + CL C Y
Sbjct: 61 PRCVNTQPGFHCLPCPPRY 79
Score = 41.9 bits (98), Expect = 0.001
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIG-YTCI-CPPGFSG--------DRCSVLGEPC 181
D C + N C C G ++C CP GF G D C+++ + C
Sbjct: 3 PDGCLS------NPCFPGAQCSS--FPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDIC 54
Query: 182 YPGACGDGSCQDVDGAMKCL-CPIGTAG 208
+ + C + CL CP G
Sbjct: 55 FSTSKVP-RCVNTQPGFHCLPCPPRYRG 81
Score = 39.6 bits (92), Expect = 0.004
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 22/95 (23%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCI-CPPGFSGDR--------------------- 173
+ C + + + T+ G+ C+ CPP + G++
Sbjct: 45 DECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP 104
Query: 174 CSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAG 208
C C+ A D KC C G AG
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
Score = 35.4 bits (81), Expect = 0.086
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 144 NNCINNGLCQ--DAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVD 195
+NC + C + Y C C G++GD G C + DG
Sbjct: 110 HNCHKHAECIYLGHFSDPMYKCECQTGYAGD-----GLICGEDSDLDGWPNLNL 158
Score = 32.7 bits (74), Expect = 0.54
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 27/88 (30%)
Query: 575 PCQNYGICYPTDTSERGYNC-SCLTGYSGDH---------------------CEKENNMC 612
C T G++C C Y G+ C+ + + C
Sbjct: 56 STSKVPRCVNTQP---GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC 112
Query: 613 MKGDVCKNGGMCKVTPDSYECLCSLGYA 640
K C G + Y+C C GYA
Sbjct: 113 HKHAECIYLGHF--SDPMYKCECQTGYA 138
Score = 30.0 bits (67), Expect = 3.7
Identities = 14/97 (14%), Positives = 21/97 (21%)
Query: 548 DLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
D ++ N + C DT G +C GD
Sbjct: 204 DEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFN 263
Query: 608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
E + C + C L + P
Sbjct: 264 ERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQT 300
Score = 30.0 bits (67), Expect = 3.8
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 575 PCQNYGICYPTDTSERG-YNCSCLTGYSGDHCEKENNMCMKG-----DVCKNGGMCKVTP 628
C + C Y C C TGY+GD + + G VC
Sbjct: 111 NCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIK 170
Query: 629 DSYECLCS 636
D+ L +
Sbjct: 171 DNCPHLPN 178
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 44.5 bits (104), Expect = 4e-05
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
+ V + + LTC+ EA TW K +G ++ F + L
Sbjct: 8 HLVKVYDYQEDGSVLLTCD--AEAK-NITWFK--DGKMIGFLT-EDKKKWNLGSNAKDPR 61
Query: 359 GMYVCKVSNK 368
GMY CK S
Sbjct: 62 GMYQCKGSQN 71
Score = 40.3 bits (93), Expect = 0.001
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 281 RFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG 340
+ D + + K + G+ + LTC + E W N +
Sbjct: 100 KDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGS--EILWQH--NDKNIGGD 155
Query: 341 AFSR-----ENTLTLQEI-KNSDAGMYVCKVSNK 368
+ E+ L+L+E + +G YVC
Sbjct: 156 EDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189
Score = 32.2 bits (72), Expect = 0.51
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 4 IKWSRADGLPLQRYAE-GNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
I W + DG + E + + G Y+C+ + S Y ++
Sbjct: 32 ITWFK-DGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84
Score = 28.7 bits (63), Expect = 6.8
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 4 IKWSRADGLPLQ-------RYAEGNVLRITN-ARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
I W + + ++ + L + + L+ SG Y C +G + Y+ L
Sbjct: 143 ILWQH-NDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201
Query: 56 V 56
Sbjct: 202 A 202
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 42.4 bits (100), Expect = 4e-05
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQEIKNSDA 358
++ LTC TW K +G + + L L E K D+
Sbjct: 21 TFTTSERVVLTCELS-RVDFPATWYK--DGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77
Query: 359 GMYVCKVSNK----DMTVEIPS 376
G + C+ +TV+ PS
Sbjct: 78 GEFECRTEGVSAFFGVTVQDPS 99
Score = 36.2 bits (84), Expect = 0.006
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
W + DG ++ +G L + A++QDSG+++C +G +F +
Sbjct: 41 ATWYK-DGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAF-----FGVT 94
Query: 56 VERMMFVDGIGPFSG 70
V+ D GP SG
Sbjct: 95 VQ-----DPSGPSSG 104
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 42.3 bits (100), Expect = 4e-05
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--------E 345
P S G +T+ C E E TWS G + R
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSC--GGRKIHSQEQGRFHIENTDDL 62
Query: 346 NTLTLQEIKNSDAGMYVCKVSNK 368
TL + +++ D G+Y + N+
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNE 85
Score = 36.1 bits (84), Expect = 0.005
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 18/69 (26%)
Query: 4 IKWSRADGLPLQRYAEGNV----------LRITNARLQDSGKYKCEIQ---GHDSFRGSD 50
+ WS G + +G L I + + QD G Y + G DS
Sbjct: 37 VTWSC-GGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT--- 92
Query: 51 YVKLNVERM 59
V +++ +
Sbjct: 93 -VNIHIRSI 100
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 43.6 bits (103), Expect = 5e-05
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
C C +G C T + Y C C G+SG CE+
Sbjct: 120 AACTNTSCSGHGECVETINN---YTCKCDPGFSGLKCEQ 155
Score = 36.7 bits (85), Expect = 0.010
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 133 DSCNT-----CKSSKHNN--CINNGLCQDAATRIGYTCICPPGFSGDRC 174
+ C+ C ++ N C +G C + YTC C PGFSG +C
Sbjct: 107 ERCSKKKLALCYTAACTNTSCSGHGECVETINN--YTCKCDPGFSGLKC 153
Score = 34.7 bits (80), Expect = 0.050
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 605 CEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
C C G C T ++Y C C G++ C
Sbjct: 117 CYTAACTNTS---CSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 29.7 bits (67), Expect = 2.3
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 179 EPCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
C +C G G C + C C G +G +CEQ
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 44.2 bits (104), Expect = 5e-05
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 295 APAFNPVST-KEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------ 346
P+ +S G++ LTC+ +D P EY+W K +G + +
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK--DGISMLTADAKKTRAFMNSS 161
Query: 347 --------TLTLQEIKNSDAGMYVCKVSNK 368
L + D+G Y C+ N
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
Score = 38.8 bits (90), Expect = 0.004
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 16/69 (23%)
Query: 4 IKWSRADGLPLQRYA---------------EGNVLRITNARLQDSGKYKCEIQ-GHDSFR 47
++W G + + ++ +D+G+Y C +
Sbjct: 33 VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNY 92
Query: 48 GSDYVKLNV 56
G + L V
Sbjct: 93 GEVSIHLTV 101
Score = 37.6 bits (87), Expect = 0.008
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 15/104 (14%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-------------NTL 348
S + P I LTC + W K G ++ + + +
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEW-KFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV-PLFTQKP 391
T + D G Y C VS + + +T V P
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS 111
Score = 29.9 bits (67), Expect = 2.5
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 23 LRITNARLQDSGKYKCE 39
L DSG+Y C+
Sbjct: 171 LIFDPVTAFDSGEYYCQ 187
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 42.0 bits (99), Expect = 6e-05
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 18/88 (20%)
Query: 295 APAF-----NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSK-----RSNGHVLPFG 340
AP + P + + C A P+ W K + + +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRC----PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 341 AFSRENTLTLQEIKNSDAGMYVCKVSNK 368
++ +L ++ + SD G Y C V N+
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENE 87
Score = 33.6 bits (77), Expect = 0.046
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQRYA---------EGNVLRITNARLQDSGKYKCE 39
++W + +G ++ + L + + D G Y C
Sbjct: 40 MRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 44.5 bits (105), Expect = 6e-05
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 305 EAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSREN-------TLTLQEI 353
P + + C A +W K NG +L ++ +
Sbjct: 26 AVPAANTVRFRC----PAAGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESV 79
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV----PLFTQKP 391
SD G Y C V NK ++ L V + L P
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Score = 39.2 bits (91), Expect = 0.004
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 17/121 (14%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----------------FSRE 345
+ + A GS + C +A W K + G +
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHL 405
L L + D G Y+C+ +N E L V ++ + ++ H
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP-RAAEEELVEADEAGSVHHHHH 240
Query: 406 H 406
H
Sbjct: 241 H 241
Score = 34.5 bits (79), Expect = 0.092
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 10/44 (22%)
Query: 4 IKWSRADGLPLQ---------RYAEGNVLRITNARLQDSGKYKC 38
I W + +G + + L + + D G Y C
Sbjct: 47 ISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89
Score = 31.4 bits (71), Expect = 0.97
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 19 EGNVLRITNARLQDSGKYKCE 39
LR+ N +D G+Y C
Sbjct: 180 ADVRLRLANVSERDGGEYLCR 200
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 44.7 bits (105), Expect = 6e-05
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 5/97 (5%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIK 354
+ C N E TW K + + SR + L K
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
D+G Y C V N + I ++ P
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNA 107
Score = 42.0 bits (98), Expect = 5e-04
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPV------EYTWSKRSNGHVLPFGAFSR---ENTLT 349
+ ++ P L C + W + L ++ L
Sbjct: 108 QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW--YKDCKPLLLDNIHFSGVKDRLI 165
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVE--IPSILLVTDSVPLFTQKP 391
+ + G Y C S + + I ++ +P
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
Score = 36.6 bits (84), Expect = 0.025
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 4 IKWSRADG-LPLQR------YAEGNVLRITNARLQDSGKYKCEIQ 41
I W + D P+ + L A+++DSG Y C ++
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 82
Score = 35.1 bits (80), Expect = 0.074
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 21/88 (23%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP------------------FGA 341
T E GS+I L CN + W NG V+
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSDIAYWKW--NGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 342 FSRENTLTLQEIKNSD-AGMYVCKVSNK 368
+ L + EI++ + C N
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNT 300
Score = 34.3 bits (78), Expect = 0.14
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 4 IKWSRADGLPLQ-----RYAEGNVLRITNARLQDSGKYKCE 39
++W D PL + L + N + G Y C
Sbjct: 141 LQW-YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 41.5 bits (98), Expect = 7e-05
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQE 352
+ G + C + + + TW L + E+ L +++
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF--GVRQLENSEKYEITYEDGVAILYVKD 64
Query: 353 IKNSDAGMYVCKVSNK 368
I D G Y CKV N
Sbjct: 65 ITKLDDGTYRCKVVND 80
Score = 31.1 bits (71), Expect = 0.34
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQ---GHDSFRGSDYV 52
+ W L+ +Y E V L + + D G Y+C++ G DS
Sbjct: 34 VTWYF-GVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA---- 88
Query: 53 KLNVERM 59
+L V+ +
Sbjct: 89 ELFVKGV 95
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVL-PFGAFSREN--- 346
+ P ++ G + L P+ TW K + EN
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK--FRKQIQESEHMKVENSEN 61
Query: 347 --TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
LT+ + G Y V NK + + L V D
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 34.2 bits (79), Expect = 0.032
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 4 IKWSRADGLPLQ-------RYAEGN-VLRITNARLQDSGKYKCEIQ---GHDSFRGSDYV 52
W + +Q +E L I AR + G Y ++ G + V
Sbjct: 39 CTWMK-FRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ----V 93
Query: 53 KLNVE 57
L V
Sbjct: 94 NLTVV 98
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 43.6 bits (103), Expect = 7e-05
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGH-VLPFGAFSR---- 344
AP F + Y S TL C + W + G ++ G R
Sbjct: 4 APHFKEELRNLNVRYQSNATLVC----KVTGHPKPIVKWYR--QGKEIIADGLKYRIQEF 57
Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV----TDSVPLFTQKPLSYLA 396
+ L + + + DA +Y + +N+ +V + L V +P + + A
Sbjct: 58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116
Score = 37.4 bits (87), Expect = 0.008
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP----FGAFSRENTLT 349
P + A G +++ + TW K ++ + + +
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGHYQVIVTRSFTS 161
Query: 350 LQEIKN---SDAGMYVCKVSNKDMTVEIPSILLVTD 382
L DAG YV N+ + L V D
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 32.8 bits (75), Expect = 0.26
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 4 IKWSRADGLPLQ--------RYAEGN--VLRITNARLQDSGKYKCE 39
+KW R G + + +G L I + D+ Y+
Sbjct: 36 VKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Score = 32.4 bits (74), Expect = 0.43
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 4 IKWSRADGLPLQ---RY---AEGN---VLRITNARLQDSGKYKCEIQ 41
I W + + Y + ++ +D+G Y +
Sbjct: 136 ITWQK-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 41.2 bits (97), Expect = 7e-05
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP----FGAFSREN--T 347
P + G L + TW+ ++ + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV--GDSGAALAPELLVDAKSSTTS 59
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
+ K +D+G Y KV N+ E ++V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 33.4 bits (77), Expect = 0.042
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 16/65 (24%)
Query: 4 IKWSRADGLPLQ--------RYAEGNVLRITNARLQDSGKYKCEIQ---GHDSFRGSDYV 52
W+ + + +A+ DSG YK +++ G D
Sbjct: 34 ATWTV-GDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI----F 88
Query: 53 KLNVE 57
++ V+
Sbjct: 89 EVIVQ 93
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 42.2 bits (99), Expect = 8e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
EG V LRI N R D G Y C + S++ V+L VE
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFR-DHSYQEEAAVELKVE 120
Score = 35.3 bits (81), Expect = 0.025
Identities = 19/112 (16%), Positives = 26/112 (23%), Gaps = 27/112 (24%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYT---WSKRSNG---HVLPFGAFSREN------- 346
P A G + L C W + H+ G
Sbjct: 12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 347 --------------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV 384
L +Q ++ SD G Y C + E L V D
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 44.7 bits (106), Expect = 9e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIK 354
G + C D + P W H++ + R + TL ++ +
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAILW-LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 355 NSDAGMYVCKVSN 367
D G Y+C +N
Sbjct: 450 VQDNGTYLCIAAN 462
Score = 33.5 bits (77), Expect = 0.30
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 4 IKWSRADGLPLQRYAEGNV-------LRITNARLQDSGKYKCEIQGHDSFRGSD--YVKL 54
I W + + G + L + A++QD+G Y C G+D L
Sbjct: 417 ILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANA---GGNDSMPAHL 473
Query: 55 NV 56
+V
Sbjct: 474 HV 475
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 9e-05
Identities = 83/552 (15%), Positives = 138/552 (25%), Gaps = 186/552 (33%)
Query: 106 FKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCIC 165
+ RL YN + K V R+ + + L + I
Sbjct: 112 YIEQRDRL-YNDNQ-VFAKYNVSRL-----------QPYLKLRQALLEL--RPAKNVLID 156
Query: 166 PPGFSGDRC--SVL-GEPCYPGACGDGSCQDVDGAMKCLCPIG----TAGKRC--EQKIK 216
G G + + + C ++C E ++
Sbjct: 157 --GVLG--SGKTWVALD----------VCLSYK--VQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 217 ILQ-------PAFKHGSYLAYPTPKTMRKFKVSLR------LNPR------DVRDGIIL- 256
+LQ P + S + + + LR +V++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 257 -YSGQS-------DDGLGDFISLA----IREKHMEFRFDTGSATPLYSN----------- 293
++ + DF+S A I H L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 294 DAPAFNPV-------STKEAP--------YG----SKITLTCNNDLEAPVEYTWSKRSNG 334
+ NP S ++ + I + N LE P EY R
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEY----RKM- 374
Query: 335 HVLPFGAFS--RENTL----TLQ----EIKNSDAGMYVCKVSN--------KDMTVEIPS 376
F S + L ++ SD + V K+ K+ T+ IPS
Sbjct: 375 ----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 377 ILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
I L L + + LH SI YN + D + Y
Sbjct: 431 IYLE--------------LKVKLENEYALHRSI-----VDHYNIPKTFDSDDLIPPY--- 468
Query: 437 GDFVSFGLEDGYPVFRFDVG--LVVLR--SKVTLVPHEWVVVTIIKDFK--EGKLSVGGE 490
D Y + +G L + ++TL + DF+ E K+
Sbjct: 469 --------LDQY-FYSH-IGHHLKNIEHPERMTLFRM------VFLDFRFLEQKIRHDST 512
Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIY----HVTPSLSVEVTEGFHGCISTIDVLGSE 546
+ LQ L Y Y V F I +
Sbjct: 513 AWNASGSILNTLQQLKF--------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 547 LDLINSAVDSAN 558
DL+ A+ + +
Sbjct: 565 TDLLRIALMAED 576
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 39.9 bits (93), Expect = 1e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 137 TCKSSKHNN-CINNGLCQ--DAATRIGYTCICPPGFSGDRC 174
C + C+N+ C A Y+C C GF G RC
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 36.4 bits (84), Expect = 0.002
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 568 SPVCAPKPCQNYGICYPTDTSERG-YNCSCLTGYSGDHCE 606
C N C+ ++ Y+C C G+ G CE
Sbjct: 8 PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 29.5 bits (66), Expect = 0.53
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 614 KGDVCKNGGMCKVTPDS----YECLCSLGYAPPNCAKRVSIGS 652
C N C + Y C C++G+ C + +
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNT 54
Score = 29.1 bits (65), Expect = 0.64
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 165 CPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQK 214
CP F C + C+ D C C IG G+RCE K
Sbjct: 7 CPETFDAWYC-LNDAHCFAVKIADLP------VYSCECAIGFMGQRCEYK 49
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 40.1 bits (93), Expect = 1e-04
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 138 CKSSKHNNCINNGLC---QDAATRIGYTCICPPGFSGDRC 174
C + C+N G C +D + Y C C PGF+G RC
Sbjct: 6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 34.3 bits (78), Expect = 0.011
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 563 SDLESSPVCAPKPCQNYGICY--PTDTSERGYNCSCLTGYSGDHCE 606
S L C N G C+ ++ Y C C G++G C
Sbjct: 1 SHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 27.4 bits (60), Expect = 3.3
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 618 CKNGGMCKV-----TPDSYECLCSLGYAPPNCAKRV 648
C NGG C + P Y C C G+ C + V
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN 346
S+ P + L+C W K +G ++
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK--DGVLVSTQDSRIKQLENG 62
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L ++ K D G Y C S + + V + + Q P
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPP 106
Score = 39.4 bits (92), Expect = 6e-04
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 4 IKWSRADGLPLQ----RYA--EGNVLRITNARLQDSGKYKC 38
I W + DG+ + R E VL+I A+L D+G+Y C
Sbjct: 40 ILWRK-DGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 43.7 bits (102), Expect = 1e-04
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 29/122 (23%)
Query: 275 EKHMEFRFDTGSATPLYSNDAPAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK 330
EF D S + P+ + + G+ IT+TC A TW
Sbjct: 113 SIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYT 172
Query: 331 RSN-------------GHVLPFGA------------FSRENTLTLQEIKNSDAGMYVCKV 365
+ FG FS L ++ K +DAG C++
Sbjct: 173 GPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCEL 232
Query: 366 SN 367
+
Sbjct: 233 AT 234
Score = 35.3 bits (80), Expect = 0.058
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDM-----TVEIPSILLVTDSVP 385
TL L + D G Y C+V+ + +L VT P
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP 134
Score = 33.0 bits (74), Expect = 0.33
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 18 AEGNVLRITNARLQDSGKYKCEIQ 41
+ L I A++ D+G+ CE+
Sbjct: 210 SGARNLVIRAAKITDAGRVWCELA 233
Score = 31.8 bits (71), Expect = 0.71
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 19 EGNVLRITNARLQDSGKYKCEI 40
LR+T+ QD G+Y C++
Sbjct: 88 AAPTLRLTHVHPQDGGRYWCQV 109
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 43.0 bits (101), Expect = 1e-04
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA-FSRE 345
P F + E + L C +++ W K + + +
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFK 167
Query: 346 N---TLTLQEIKNSDAGMYVCKVSNK 368
+ TL + E DAG+Y + +
Sbjct: 168 DGICTLLITEFSKKDAGIYEVILKDD 193
Score = 34.1 bits (78), Expect = 0.13
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 4 IKWSRADGLPLQ-----RYAEGNV-LRITNARLQDSGKYKCEI 40
I W + D + + +G L IT +D+G Y+ +
Sbjct: 149 IVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 190
Score = 32.6 bits (74), Expect = 0.33
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 10/93 (10%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA-----FSREN---TLTLQEIKNSDAGM 360
G L + + N + G R + ++++++ D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIF--NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 361 YVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
Y ++ + T +L+ L +
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQ 108
Score = 29.1 bits (65), Expect = 4.3
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 23 LRITNARLQDSGKYKCEIQ 41
+ + + +D G Y ++Q
Sbjct: 63 MFMEKLQDEDEGTYTFQLQ 81
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 39.4 bits (92), Expect = 1e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+ C + CI G C+ +C+C G+ G RC
Sbjct: 6 SRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGYIGARC 43
Score = 32.1 bits (73), Expect = 0.057
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 573 PKPCQNY---GIC-YPTDTSERGYNCSCLTGYSGDHCEK 607
PK ++Y G C + +C C GY G CE+
Sbjct: 9 PKQYKHYCIKGRCRFVVAEQT--PSCVCDEGYIGARCER 45
Score = 27.8 bits (62), Expect = 1.9
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 179 EPC---YPGACGDGSCQ---DVDGAMKCLCPIGTAGKRCEQK 214
C Y C G C+ C+C G G RCE+
Sbjct: 6 SRCPKQYKHYCIKGRCRFVVAEQTP-SCVCDEGYIGARCERV 46
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 40.8 bits (96), Expect = 2e-04
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN---TLTLQEIKNSD 357
+ GS T C W + L ++ LTL+++ D
Sbjct: 24 DVQEGSSATFRCRISPANYEPVHWFL--DKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+G + ++ + L VT+ +F++
Sbjct: 82 SGTIYFEAGDQRASAA----LRVTEKPSVFSRSG 111
Score = 35.1 bits (81), Expect = 0.020
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV--LRITNARLQDSGKYKCE 39
+ W D PL G L + L+DSG E
Sbjct: 45 VHWFL-DKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 40.8 bits (95), Expect = 2e-04
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 302 STKEAPYGSKITLTC--NNDLEAPVEYTW----------SKRSNGHVLPFGAFSRENT-- 347
T+ A GS ++ TC + ++P+ + W + H+ G E T
Sbjct: 18 ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77
Query: 348 LTLQEIKNSDAGMYVCKVSN 367
L L+ ++ + G Y C +SN
Sbjct: 78 LRLRNVEFTSEGXYQCVISN 97
Score = 32.7 bits (74), Expect = 0.10
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 22 VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+LR+ N G Y+C I H S L +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 43.3 bits (101), Expect = 2e-04
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 11/105 (10%)
Query: 290 LYSNDAPAFN-PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFG---AFSR 344
L PA + G +TLTC + E W
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVL--RKPAAGSHPSRWAGM 58
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQ 389
L L+ ++ D+G Y C + + ++ L+ D P Q
Sbjct: 59 GRRLLLRSVQLHDSGNYSCYRAGRPAG----TVHLLVDVPPEEPQ 99
Score = 32.5 bits (73), Expect = 0.52
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 1 NAYIKWSRADGL----PLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
NA + W P + G L + + +L DSG Y C G + V L V
Sbjct: 36 NATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP----AGTVHLLV 91
Query: 57 E 57
+
Sbjct: 92 D 92
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 42.6 bits (100), Expect = 2e-04
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 21/102 (20%)
Query: 305 EAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSREN-------TLTLQEI 353
P + + C A P+ W K NG +L ++ +
Sbjct: 30 AVPAANTVKFRC----PAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV----PLFTQKP 391
SD G Y C V N+ ++ L V + L P
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLP 125
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 21/96 (21%)
Query: 294 DAPAFNPVSTKEAP------YGSKITLTCNNDLEAPVEYTWSKRSNG------------- 334
+ P+ P G + C +A W K
Sbjct: 112 ERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL 171
Query: 335 HVLPFGAFSREN--TLTLQEIKNSDAGMYVCKVSNK 368
VL + N L L + +DAG Y+CKVSN
Sbjct: 172 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Score = 34.9 bits (80), Expect = 0.068
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPL---------QRYAEGNVLRITNARLQDSGKYKCE 39
++W + +G + + L + + D G Y C
Sbjct: 51 MRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Score = 33.3 bits (76), Expect = 0.25
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 18/54 (33%)
Query: 4 IKWSR----------ADGLPLQR--------YAEGNVLRITNARLQDSGKYKCE 39
I+W + DGLP + + VL + N D+G+Y C+
Sbjct: 150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 43.6 bits (102), Expect = 2e-04
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENNM 611
C PCQN G C T Y C C TG+ G++C +
Sbjct: 4 CCSNPCQNRGEC--MSTGFDQYKCDCTRTGFYGENCTTPEFL 43
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 41.9 bits (98), Expect = 2e-04
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
S TLTC VE + L T+ + + CK N+
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQ--GKEHLRSL-----RQKTMSYQWTNLRAPFKCKAVNR 162
Score = 36.5 bits (84), Expect = 0.013
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 309 GSKITLTCNN--DLEAPVEYTWSKRSN------GHVLPFGAFSREN-----TLTLQEIKN 355
G I L N + E W + S + PF L ++ +
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPL 386
D+G Y V + + T + L + +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMV 101
Score = 33.0 bits (75), Expect = 0.22
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 23 LRITNARLQDSGKYKCEI 40
L+I N DSG Y +
Sbjct: 63 LKIKNLTRDDSGTYNVTV 80
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 43.3 bits (101), Expect = 2e-04
Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 19/156 (12%)
Query: 229 AYPTPK-TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSA 287
A+P K T+ + L + D+G F A E + +
Sbjct: 307 AHPRAKVTLNGVPAQPLGPRAQLL----LKATPEDNG-RSFSCSATLEVAGQLIHKNQTR 361
Query: 288 TPLYSNDAPAFNPVSTKE---APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
L P + P S+ T C E K LP G
Sbjct: 362 E-LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPIG---- 415
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
+ G Y+C+ + V + V
Sbjct: 416 ----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 38.7 bits (89), Expect = 0.007
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCK 364
P G + +TC+ + P+ L N + + +C
Sbjct: 10 ILPRGGSVLVTCSTSCDQPMLLGIETPLPKKEL---LLPGNNRKVYELSNVQEDSQPMCY 66
Query: 365 VSNKDMTVEIPSILLV 380
+ D + L V
Sbjct: 67 SNCPDGQSTAKTFLTV 82
Score = 38.3 bits (88), Expect = 0.009
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLT 349
+YS AP E G+++T+ C A V L
Sbjct: 280 IYSFPAPNVILTKP-EVSEGTEVTVKCEAHPRAKVTLNGVPA--------QPLGPRAQLL 330
Query: 350 LQEIKNSDAGMYVCKVSNK 368
L+ + + C + +
Sbjct: 331 LKATPEDNGRSFSCSATLE 349
Score = 36.8 bits (84), Expect = 0.027
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 309 GSKITLTCNNDLEAPV---EYTWSKRSNGHVL---PFGAFSRENTLTLQEIKNSDAGMYV 362
G +TL C + AP + L P E T T+ ++ +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLR--GEKELKREPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 363 CKVSN 367
C+
Sbjct: 159 CRTEL 163
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 41.9 bits (97), Expect = 2e-04
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 536 CISTIDVLGSELDLINSAVDSANIMDCSDL-ESSPVCAPKPCQNYGIC--YPTDTSERGY 592
+ + N + + C + E C +G C P Y
Sbjct: 18 LVQMS---NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMY 74
Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVTPDSYECLCSLGYAPPNC 644
C C+ GY+ ++C + ++G S C C++G P
Sbjct: 75 XCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE 129
Score = 39.6 bits (91), Expect = 0.001
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERG-YNCSCLTGYSGDH-----CEKENNMCMKGDVCKNGGMC 624
C C G C SE CSC G + C + + +C
Sbjct: 94 CQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
Query: 625 KVTPDSYECLCSLGY 639
Y C C G+
Sbjct: 154 XNVEGVYXCQCMEGF 168
Score = 38.5 bits (88), Expect = 0.004
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 123 FKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRI---GYTCICPPGFSGDRCSVLGE 179
E + + C G C + Y C C G++ + + +
Sbjct: 33 LVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLD 92
Query: 180 PCYPGACGDG-----SCQDVDGAMKCLCPIGTAGKRCEQ 213
C CG+ + C C IG ++
Sbjct: 93 VCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131
Score = 37.3 bits (85), Expect = 0.009
Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 16/97 (16%)
Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHC-----------EKENNMC 612
+ E+S V C N G + C C G E C
Sbjct: 1 EAEASAVTVDTICXN-GQLVQMSNH---FXCMCNEGLVHLSENTCEEXNECXXETLGXAC 56
Query: 613 MKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVS 649
+ C + Y C C GY +
Sbjct: 57 GEFGQCIENP-DPAQVNMYXCGCIEGYTLXEDTCVLD 92
Score = 36.9 bits (84), Expect = 0.011
Identities = 12/74 (16%), Positives = 17/74 (22%), Gaps = 14/74 (18%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-----------LGEPCYPGA-CGDGSC 191
+ NG + C+C G + LG C C +
Sbjct: 10 DTICXNGQLVQ--MSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPD 67
Query: 192 QDVDGAMKCLCPIG 205
C C G
Sbjct: 68 PAQVNMYXCGCIEG 81
Score = 35.4 bits (80), Expect = 0.036
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 131 GVDSCNTCKSSKHNNCINNGLCQDAATRI--GYTCICPPGFSGDR-----CSVLGE-PCY 182
+ ++ NC +G C C C G + C+ GE C
Sbjct: 84 LXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ 143
Query: 183 PGACG-DGSCQDVDGAMKCLCPIG 205
+ C +V+G C C G
Sbjct: 144 LXCNTDNEVCXNVEGVYXCQCMEG 167
Score = 31.5 bits (70), Expect = 0.76
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
C + +C + Y C C+ G++ D E N+C+ +
Sbjct: 142 CQLXCNTDNEVCXNVEGV---YXCQCMEGFTFD---XEXNVCLGPHHHHH 185
Score = 29.2 bits (64), Expect = 3.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 140 SSKHNNCINNGLCQDAATRIGYTCICPPGFSGD 172
+ + +N +C + Y C C GF+ D
Sbjct: 141 ACQLXCNTDNEVCXN--VEGVYXCQCMEGFTFD 171
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 41.3 bits (97), Expect = 3e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C P C +G C + Y C+C GY G C+
Sbjct: 122 CQPWSCSGHGECVEIINN---YTCNCDVGYYGPQCQ 154
Score = 36.3 bits (84), Expect = 0.013
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 133 DSCNT-----CK--SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE 179
D+C+ C S + +C +G C + YTC C G+ G +C +
Sbjct: 107 DACHKLKAALCYTASCQPWSCSGHGECVEIINN--YTCNCDVGYYGPQCQFVQV 158
Score = 33.6 bits (77), Expect = 0.12
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 605 CEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
C + + C G C ++Y C C +GY P C
Sbjct: 117 CYTASC---QPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 38.3 bits (89), Expect = 3e-04
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
N C S C + G C+ C+C G+ G RC
Sbjct: 6 NDCPDSHTQFCFH-GTCRFLVQEDKPACVCHSGYVGARC 43
Score = 30.5 bits (69), Expect = 0.16
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
C + + + C C +GY G CE
Sbjct: 16 CFHGTCRFLVQEDK--PACVCHSGYVGARCEH 45
Score = 26.7 bits (59), Expect = 3.9
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 179 EPC---YPGACGDGSCQ---DVDGAMKCLCPIGTAGKRCEQK 214
C + C G+C+ D C+C G G RCE
Sbjct: 6 NDCPDSHTQFCFHGTCRFLVQEDKPA-CVCHSGYVGARCEHA 46
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 40.0 bits (94), Expect = 3e-04
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 284 TGSATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA- 341
+GS+ P A P+ + G + L C A W K + +
Sbjct: 3 SGSSGP------AAIIKPLEDQWVAPGEDVELRCELS-RAGTPVHWLK--DRKAIRKSQK 53
Query: 342 --FSREN---TLTLQEIKNSDAGMYVCKVSN 367
E L ++ DAG Y C+V
Sbjct: 54 YDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84
Score = 36.5 bits (85), Expect = 0.005
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+ W + D ++ +Y EG + L I A L+D+G+Y CE
Sbjct: 39 VHWLK-DRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 39.6 bits (93), Expect = 3e-04
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR--------ENTLTL 350
+ A G ++ L C ++ +A V W K NG + G SR ++ L +
Sbjct: 13 QLEDTTAYCGERVELECEVSEDDANV--KWFK--NGEEIIPGPKSRYRIRVEGKKHILII 68
Query: 351 QEIKNSDAGMYVCKVSNK----DMTVEIPS 376
+ +DA Y + ++V++ S
Sbjct: 69 EGATKADAAEYSVMTTGGQSSAKLSVDLKS 98
Score = 34.2 bits (79), Expect = 0.032
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 4 IKWSRADGLPLQ-----RY---AEGNV--LRITNARLQDSGKYKCE 39
+KW + +G + RY EG L I A D+ +Y
Sbjct: 38 VKWFK-NGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 42.6 bits (99), Expect = 3e-04
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 31/118 (26%)
Query: 305 EAPYGSKITLTCN---NDLEAPVEYTWSKRSNGH-------------------------- 335
G + C+ + + + W S H
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRN 188
Query: 336 -VLPFGAFSREN-TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
V G SR + ++ LQ +K SD G+Y C + + +L V T P
Sbjct: 189 RVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Score = 35.6 bits (81), Expect = 0.055
Identities = 11/104 (10%), Positives = 29/104 (27%), Gaps = 27/104 (25%)
Query: 305 EAPYGSKITLTCNNDLEAPV---EYTWSKRSNGHVLPFGAFSREN--------------- 346
G + + C W + +
Sbjct: 16 RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHL 75
Query: 347 ---------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
+L LQ+++ +D G+Y C++ K+ ++ + + +
Sbjct: 76 VGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 32.5 bits (73), Expect = 0.42
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
L + + + D G Y CEI+ S +K VE
Sbjct: 86 LLLQDVQKADEGIYTCEIR---LKNESMVMKKPVE 117
Score = 31.8 bits (71), Expect = 0.74
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LRITNARLQDSGKYKCEIQ-GHDSFRGSDYVKLNVER 58
+++ + D G Y C I G R + + + +
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 11/75 (14%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAP-VEYTWSKRSNGHVLPFGA---FSREN---TLTLQE 352
P+ E G +L P V W G L + L L
Sbjct: 11 PLYGVEVFVGETAHFEI--ELSEPDVHGQWKL--KGQPLAASPDCEIIEDGKKHILILHN 66
Query: 353 IKNSDAGMYVCKVSN 367
+ G + +N
Sbjct: 67 CQLGMTGEVSFQAAN 81
Score = 35.4 bits (82), Expect = 0.008
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+W G PL +G L + N +L +G+ +
Sbjct: 36 GQWKL-KGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ 78
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 40.7 bits (94), Expect = 3e-04
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE-NNMCMKGDVCKNGGMCKVTP 628
V + C N G C + C+C + G HCE + + C +G+ G
Sbjct: 9 VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDT 68
Query: 629 DSYECL 634
CL
Sbjct: 69 MGRPCL 74
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 42.6 bits (100), Expect = 4e-04
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSK-----RSNGHVLPFGAFSRENTLTLQEIKNS 356
G + LTCN + P E +W K S+ H R T+ + +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 357 DAGMYVCKVSNK 368
D+G Y V NK
Sbjct: 290 DSGKYGLVVKNK 301
Score = 41.4 bits (97), Expect = 7e-04
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 8/109 (7%)
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGA----FSRENTLT 349
P F + E + L C W K + + TL
Sbjct: 7 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFKDGICTLL 64
Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALP 398
+ E DAG+Y + + + L+ + + +AL
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALS 112
Score = 37.6 bits (87), Expect = 0.013
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 323 PVEYTWSKRSNGHVLP------FGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPS 376
++ WS NG + G + L + E +D G YV ++ + +
Sbjct: 137 DLKVNWSH--NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194
Query: 377 ILLVTDSVPLFTQ 389
L + +
Sbjct: 195 DLSGQAYDEAYAE 207
Score = 37.2 bits (86), Expect = 0.020
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 4 IKWSRADGLPLQ-----RYAEGN-VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
I W + D + + +G L IT +D+G Y+ ++ RG D +L +
Sbjct: 39 IVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK---DDRGKDKSRLKL 93
Score = 36.4 bits (84), Expect = 0.033
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 4 IKWSRADGLPL------QRYAEGNV--LRITNARLQDSGKYKCEIQ 41
+ WS +G + + G L+I D GKY E+
Sbjct: 140 VNWSH-NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 184
Score = 33.7 bits (77), Expect = 0.23
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV--LRITNARLQDSGKYKCE 39
+ W + + L ++ G I DSGKY
Sbjct: 254 VSWLK-NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLV 297
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 42.5 bits (100), Expect = 4e-04
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSRENTLTLQEIK 354
S EA G +T+ C+ + + W SN VL G+ R L ++++
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQ-GMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
D G+Y C + + L V + L+ A P
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPW 354
Score = 35.2 bits (81), Expect = 0.086
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 1 NAYIKWSRADGLPLQRYAEGNV------LRITNARLQDSGKYKCEIQGHDSFRGSD--YV 52
+ S ++ L + + G+V L +++D G Y C ++ V
Sbjct: 275 MTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAM---GETFNETLSV 331
Query: 53 KLNV 56
+L V
Sbjct: 332 ELKV 335
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/111 (18%), Positives = 25/111 (22%), Gaps = 17/111 (15%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN----- 346
F P T G L C P W K +G L
Sbjct: 108 RDDFRVEPKDT-RVAKGETALLECGPPKGIPEPTLIWIK--DGVPLDDLKAMSFGASSRV 164
Query: 347 ------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
L + ++ D G Y C N T E L+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 41.8 bits (98), Expect = 4e-04
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 13/107 (12%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENT----------LTLQ 351
+ TL C + + W K +G + T+Q
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFK--DGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 352 EIKNSDAGMYVCKVSNKD-MTVEIPSILLVTDSVPLFTQKPLSYLAL 397
K D G Y C N+ V + L + F +P
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Score = 35.6 bits (82), Expect = 0.039
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 4 IKWSRADGLPLQ-------------RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSD 50
+ W + DG+PL R +G L I+N D G YKC Q R S
Sbjct: 141 LIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 51 YVKLNVE 57
Y KL V+
Sbjct: 200 YAKLIVQ 206
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 37.9 bits (88), Expect = 4e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
C S + C++ G C C C G++G RC
Sbjct: 6 CSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRC 41
Score = 29.8 bits (67), Expect = 0.31
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
C + Y D S+ C C GY+G CE
Sbjct: 14 CLHGQCIYLVDMSQ--NYCRCEVGYTGVRCE 42
Score = 25.9 bits (57), Expect = 7.4
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 180 PC---YPGACGDGSC---QDVDGAMKCLCPIGTAGKRCE 212
C G C G C D+ C C +G G RCE
Sbjct: 5 KCSSDMNGYCLHGQCIYLVDMSQNY-CRCEVGYTGVRCE 42
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 38.6 bits (89), Expect = 5e-04
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
+ + C + CI+ G C+ +CIC PG+ G+RC
Sbjct: 30 GKGLGKKRDPCLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERC 75
Score = 31.6 bits (71), Expect = 0.16
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 573 PKPCQNY---GIC-YPTDTSERGYNCSCLTGYSGDHCE 606
+ +++ G C Y + +C C GY G+ C
Sbjct: 41 LRKYKDFCIHGECKYVKELRA--PSCICHPGYHGERCH 76
Score = 27.8 bits (61), Expect = 3.1
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 171 GDRCSVLGEPC---YPGACGDGSCQDVD--GAMKCLCPIGTAGKRCEQ 213
G +PC Y C G C+ V A C+C G G+RC
Sbjct: 30 GKGLGKKRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHG 77
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 42.7 bits (100), Expect = 5e-04
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENNM 611
C PCQ+ GIC Y C C TGYSG +C
Sbjct: 5 CCYYPCQHQGIC--VRFGLDRYQCDCTRTGYSGPNCTIPEIW 44
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 42.2 bits (98), Expect = 5e-04
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 9/101 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---------FSRENTLTL 350
P K + + + A + W L ++ L
Sbjct: 24 PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83
Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ +D G Y C + N ++ L V F
Sbjct: 84 RPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM 124
Score = 39.9 bits (92), Expect = 0.003
Identities = 10/104 (9%), Positives = 24/104 (23%), Gaps = 4/104 (3%)
Query: 313 TLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTV 372
+ TW L+ S+ G Y C V+ +
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGR 203
Query: 373 EIP---SILLVTDSVPLFTQKPLSYLAL-PTLTDAHLHFSIELS 412
++ + P P+ + + + + +
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP 247
Score = 37.9 bits (87), Expect = 0.011
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 4 IKWSRADGLPLQR----YAEGNVLRITNARLQDSGKYKCEIQGHD---SFRGSDYVKLNV 56
I W +Q EG L A + ++G Y C + + +F + + + V
Sbjct: 157 ITWYM-GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKV 215
Query: 57 E 57
Sbjct: 216 V 216
Score = 36.4 bits (83), Expect = 0.030
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 19 EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
E +VL L D+G Y C ++ ++ L V +
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRN-TTYCSKVAFPLEVVQ 115
Score = 34.5 bits (78), Expect = 0.13
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 299 NPVSTKEAPYGSKITLTCN----NDLEAPVEYTWSK--------------RSNGHVLPFG 340
N E G ++ + C +++ E W+ +
Sbjct: 231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE 290
Query: 341 AFSRENTLTLQEIKNSD-AGMYVCKVSNKDMTVEIPSILLVTDSVPLFT 388
+R L+++++ + D YVC + V + + P +T
Sbjct: 291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYT 339
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 39.4 bits (92), Expect = 5e-04
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 285 GSATPLYSNDAPAFNPVSTK-----EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPF 339
GS+ S + V A ++ LTC E W+K +G +
Sbjct: 1 GSSGS--SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA-EVRWTK--DGEEVVE 55
Query: 340 GA---FSREN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+E+ L L ++ D+G Y+C++ ++ + + VT+
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT----VTVTEPPVRIIYSG 109
Score = 36.7 bits (85), Expect = 0.005
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
++W++ DG + E V L + +L+DSG+Y CE
Sbjct: 44 VRWTK-DGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 40.8 bits (95), Expect = 6e-04
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 13/87 (14%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-------------RSNGHVLPFGAFSREN 346
P GS ++L C+ D E + +L +
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVE 373
+ ++ D+G Y C V
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDY 94
Score = 40.4 bits (94), Expect = 0.001
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRS-----NGHVLPFGAFSR 344
+ + E P ++ LTC E +W S + P G +
Sbjct: 99 VKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQV 158
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV-PLFTQ 389
+ L +K + + C N M +I+ + P +
Sbjct: 159 TSVLR---LKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPR 201
Score = 36.2 bits (83), Expect = 0.021
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQG 74
G I + +++DSG+Y+C + DY L V+ I E G
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVI---CGAAWDYKYLTVKVKASYMRIDTRILEVPG 117
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 38.9 bits (91), Expect = 6e-04
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 292 SNDAPAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN 346
S + P++ + G +I L C ++ + W+K NG + ++
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKC--EISENIPGKWTK--NGLPVQESDRLKVVQKG 58
Query: 347 ---TLTLQEIKNSDAGMYVCKVSNKDMT 371
L + D G YV ++T
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDAYNVT 86
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
KW++ +GLP+Q R +G + L I NA +D G Y + + K++
Sbjct: 37 GKWTK-NGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA---YNVTLPAKVH 92
Query: 56 VERMMFVDGIGPFSG 70
V GP SG
Sbjct: 93 VI-------SGPSSG 100
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 38.9 bits (91), Expect = 7e-04
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 296 PAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TL 348
AF + E GS + A V+ W + G + + E TL
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQR--GGSDISASNKYGLATEGTRHTL 65
Query: 349 TLQEIKNSDAGMYVCKVSN 367
T++E+ +D G Y +
Sbjct: 66 TVREVGPADQGSYAVIAGS 84
Score = 36.6 bits (85), Expect = 0.004
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
++W R G + +Y EG L + D G Y
Sbjct: 39 VRWQR-GGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVI 81
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 38.9 bits (91), Expect = 7e-04
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
KW + +G+ ++ R G L I + R +D G Y G + S KLN
Sbjct: 39 GKWYK-NGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG---YALSLSAKLN 94
Query: 56 VERMMFVDGIGPFSG 70
+ GP SG
Sbjct: 95 FLE---IKVSGPSSG 106
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQEI 353
++ + C E V W K NG + S L + ++
Sbjct: 14 DIADLTVKAAEQAVFKCEVSDE-KVTGKWYK--NGVEVRPSKRITISHVGRFHKLVIDDV 70
Query: 354 KNSDAGMYVCKVSNK 368
+ D G Y
Sbjct: 71 RPEDEGDYTFVPDGY 85
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.5 bits (92), Expect = 8e-04
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
G+ + +TN +L D G Y+C+++ + + L V
Sbjct: 85 KSGDASINVTNLQLSDIGTYQCKVK-KAPGVANKKIHLVV 123
Score = 34.8 bits (80), Expect = 0.026
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 32/113 (28%)
Query: 300 PVSTKEAPYGSKITLTC----NNDLEAPVEYTWSKRSNG-------HVLPFGAFSREN-- 346
P E G L C + + + P++ W +L G ++
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 347 -------------------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
++ + ++ SD G Y CKV L+V
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 38.9 bits (90), Expect = 8e-04
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD--HCEKENNMCMKGDVCKNGG----- 622
C CY CL G+ C + C + NGG
Sbjct: 12 KCIDTNVPENAACYRYLDGTE--EWRCLLGFKEVGGKCVPASITCEE----NNGGCAPEA 65
Query: 623 MCKVT-PDSYECLCSLGYAPP 642
C + EC C+ + P
Sbjct: 66 ECTMDDKKEVECKCTKEGSEP 86
Score = 28.5 bits (63), Expect = 2.8
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 131 GVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD--RCSVLGEPCYP--GAC 186
+ S + C + N N C C GF +C C G C
Sbjct: 6 NMSSAHKCIDT---NVPENAACYRYLDGT-EEWRCLLGFKEVGGKCVPASITCEENNGGC 61
Query: 187 G-DGSCQDVDGAM-KCLCPIGTAG 208
+ C D +C C +
Sbjct: 62 APEAECTMDDKKEVECKCTKEGSE 85
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 39.2 bits (91), Expect = 8e-04
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 14 LQRYAEGNV-LRITNARLQDSGKYKCEIQGHDS 45
+ G+V L+I ++ D Y CE+
Sbjct: 70 VSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTP 102
Score = 30.7 bits (69), Expect = 0.58
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 25/89 (28%)
Query: 306 APYGSKITLTCN---NDLEAPVEYTWSK-RSNGHVLPFGAFSREN--------------- 346
+ + + C V W + V F S +
Sbjct: 13 GTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSH 72
Query: 347 ------TLTLQEIKNSDAGMYVCKVSNKD 369
+L + ++ D Y C+V+ +
Sbjct: 73 KVPGDVSLQINTLQMDDRNHYTCEVTWQT 101
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 39.1 bits (91), Expect = 9e-04
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR---- 344
L N P + T+ A +G K + C P WS +VL G R
Sbjct: 9 LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSW--KENVLESGTSGRYTVE 66
Query: 345 --------ENTLTLQEIKNSD-AGMYVCKVSNK 368
+TLT+ I +D +Y C N
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNS 99
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 36.8 bits (85), Expect = 0.001
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 137 TCKSSKHNN-CINNGLCQ--DAATRIGYTCICPPGFSGDRC 174
C + C+N+ C A Y+C C GF G RC
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 33.4 bits (76), Expect = 0.020
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 576 CQNYGICYPTDTSERG-YNCSCLTGYSGDHCE 606
C N C+ ++ Y+C C G+ G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 618 CKNGGMCKVTPDS----YECLCSLGYAPPNC 644
C N C + Y C C++G+ C
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 27.2 bits (60), Expect = 2.7
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 165 CPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQK 214
CP F C + C+ D C C IG G+RCE K
Sbjct: 7 CPETFDAWYC-LNDAHCFAVKIADLP------VYSCECAIGFMGQRCEYK 49
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 38.4 bits (90), Expect = 0.001
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 289 PLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSR 344
P + AP + + P G N + E W NG L + ++
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH--NGVELQESSKIHYTN 59
Query: 345 EN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
+ TL + + D+G Y +N + L VT
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 32.7 bits (75), Expect = 0.097
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 18/65 (27%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE---IQGHDSF------ 46
+KW +G+ LQ + V L I + DSG Y+ +G S
Sbjct: 40 VKWYH-NGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Query: 47 RGSDY 51
G DY
Sbjct: 99 TGGDY 103
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
P F G++ L C P W K G L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKC----VVLGEPPPVVVWEK--GGQQLAASERLSFPADG 66
Query: 345 -ENTLTLQEIKNSDAGMYVCKVSN 367
E+ L L +DAG+YVC+ N
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARN 90
Score = 33.1 bits (76), Expect = 0.084
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+ W + G L R A+G L +T A D+G Y C
Sbjct: 45 VVWEK-GGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 41.1 bits (96), Expect = 0.001
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 547 LDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
+D + ++ + C+N G C PT C C G+ GD C
Sbjct: 370 VDPKRPLMPEECRATVQPAQTLTSECSRLCRN-GYCTPTG------KCCCSPGWEGDFCR 422
Query: 607 KENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAK 646
C++GG+C V P+ +CLC GY P C +
Sbjct: 423 ----TAKCEPACRHGGVC-VRPN--KCLCKKGYLGPQCEQ 455
Score = 35.7 bits (82), Expect = 0.064
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 163 CICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
C C PG+ GD C C P G C + KCLC G G +CEQ
Sbjct: 410 CCCSPGWEGDFCRT--AKCEPACRHGGVCVRPN---KCLCKKGYLGPQCEQ 455
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN---TLTLQEIK 354
+ G KI LT + E W K NG + F TLT+ +
Sbjct: 24 PAYQVSKGHKIRLTVELA-DHDAEVKWLK--NGQEIQMSGSKYIFESIGAKRTLTISQCS 80
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTD 382
+D Y C V + + E L V +
Sbjct: 81 LADDAAYQCVVGGEKCSTE----LFVKE 104
Score = 36.6 bits (85), Expect = 0.004
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQR-------YAEGNV--LRITNARLQDSGKYKCE 39
+KW + +G +Q + G L I+ L D Y+C
Sbjct: 47 VKWLK-NGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV 90
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 38.8 bits (90), Expect = 0.001
Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 28/120 (23%)
Query: 292 SNDAPAF--NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSK-----RSNGHVLPFG 340
+ F P+S + G + L C EA PV E W L G
Sbjct: 18 GSHMAGFVQAPLSQ-QRWVGGSVELHC----EAVGSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 341 AFSR------------ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFT 388
A +T+++ + D G Y C+ SN + V
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAV 132
Score = 33.8 bits (77), Expect = 0.072
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 23/73 (31%)
Query: 4 IKWSRADGLPLQRYA--------------------EGNVLRITNARLQDSGKYKCE---I 40
I+W P + + + I +D+G Y+C
Sbjct: 53 IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
Query: 41 QGHDSFRGSDYVK 53
+ + VK
Sbjct: 113 PDRNHLTRAPRVK 125
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKNS 356
G L C + V W + + R + TL + S
Sbjct: 360 RDLNISEGRMAELKCRTPPMSSV--KWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 357 DAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
D G+Y C V+N + L V+ T +
Sbjct: 418 DTGVYTCMVTNVAGNSNASAYLNVS---TAGTHHHHHH 452
Score = 35.1 bits (81), Expect = 0.086
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 4 IKWSRADGLPLQ--------RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDY--VK 53
+KW +G L L ++ L D+G Y C + G+
Sbjct: 382 VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV---AGNSNASAY 438
Query: 54 LNV 56
LNV
Sbjct: 439 LNV 441
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 38.1 bits (88), Expect = 0.001
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 309 GSKITLTCN---NDLEAPVEYTWSK--------RSNGHVLPFGAFSREN-----TLTLQE 352
G IT + L P W K + H+ ++ R + L + +
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
+ + G Y C+VS KD L V +
Sbjct: 79 AQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 31.9 bits (72), Expect = 0.20
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 23 LRITNARLQDSGKYKCEI---QGHDS 45
L IT+A+ +G Y+CE+ D
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDC 99
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 37/102 (36%)
Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPG------------- 184
C ++C T+ CP G +G RC E C G
Sbjct: 1 CPCPGGSSC-----AIVPKTKEVVCTHCPTGTAGKRC----ELCDDGYFGDPLGSNGPVR 51
Query: 185 ------------ACGDGSCQDVDGAMKCL-CPIGTAGKRCEQ 213
G+C + G +CL C TAG C++
Sbjct: 52 LCRPCQCNDNIDPNAVGNCNRLTG--ECLKCIYNTAGFYCDR 91
Score = 35.6 bits (82), Expect = 0.028
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
PC C ++ C TG +G CE
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL 34
Score = 33.6 bits (77), Expect = 0.12
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 27/102 (26%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCI-CPPGFSGDRC-------------SVLG 178
C C+ + + + G C R+ C+ C +G C
Sbjct: 51 RLCRPCQCNDNIDPNAVGNCN----RLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPA 106
Query: 179 EPCYPGAC-------GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
+ C AC SC V G +C C +G+ C
Sbjct: 107 DKCKACACNPYGTVQQQSSCNPVTG--QCQCLPHVSGRDCGT 146
Score = 30.2 bits (68), Expect = 1.6
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
D C C + + C + T C C P SG C C PG S Q
Sbjct: 107 DKCKACACNPYGTVQQQSSC-NPVTG---QCQCLPHVSGRDCGT----CDPGYYNLQSGQ 158
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 38.3 bits (88), Expect = 0.002
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG----GMCKVTPDSY 631
C N G C + C+C + G HCE + + NG G
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEG---NGHFYRGKASTDTMGR 59
Query: 632 ECL 634
CL
Sbjct: 60 PCL 62
Score = 29.8 bits (66), Expect = 1.3
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 145 NCINNGLCQDAATRIGYT-CICPPGFSGDRCSVLGEPCYPGACG 187
+C+N G C C CP F G C + G
Sbjct: 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNG 45
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 37.8 bits (88), Expect = 0.002
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQE 352
+ T E G + C + A W+ G + + +R+ L ++E
Sbjct: 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTV--GGKTVGSSSRFQATRQGRKYILVVRE 71
Query: 353 IKNSDAGMYVCKVSN 367
SDAG V V
Sbjct: 72 AAPSDAGEVVFSVRG 86
Score = 35.1 bits (81), Expect = 0.015
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 19/75 (25%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
W+ G + R+ +G L + A D+G+ + L
Sbjct: 41 AMWTV-GGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV---RGLTSK--ASLI 94
Query: 56 VERMMFVDGIGPFSG 70
V + GP SG
Sbjct: 95 VR-----ERSGPSSG 104
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 38.4 bits (89), Expect = 0.002
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 32/118 (27%)
Query: 300 PVSTKEAPYGSKITLTC----NNDLEAPVEYTWSKRSNGHVLPFGAFSREN--------- 346
GS++TL C + + + +TW + G F
Sbjct: 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVG 64
Query: 347 -----------------TLTLQEIKNSDAGMYVCKVSN-KDMTVEIPSI-LLVTDSVP 385
++ + + SD G + C V N D+ + + L V + VP
Sbjct: 65 TFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 32.6 bits (74), Expect = 0.17
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGH-DSFRGSDYVKLNV 56
+ I N D+G + C+++ D + V L V
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 13/79 (16%)
Query: 301 VSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF-----------SRENTLT 349
+ + W NG +L + L
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQWFY--NGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 350 LQEIKNSDAGMYVCKVSNK 368
L + + G Y N+
Sbjct: 66 LDNPTHMNNGDYTLIAKNE 84
Score = 30.9 bits (70), Expect = 0.48
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 4 IKWSRADGLPLQ-------RYAEGN------VLRITNARLQDSGKYKCE 39
++W +G L + N L++ N ++G Y
Sbjct: 33 LQWFY-NGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 39.9 bits (93), Expect = 0.002
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 293 NDAPAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA-------FSR 344
N A + G + LTCN + P E +W K N L R
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK--NEKALAQTDHCNLKFEAGR 172
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNK 368
T+ + +D+G Y V NK
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNK 196
Score = 37.9 bits (88), Expect = 0.007
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 309 GSKITLTCNNDLEAP-VEYTWSKRSNGHVLP------FGAFSRENTLTLQEIKNSDAGMY 361
I L ++ WS NG + G + L + E +D G Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSH--NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74
Query: 362 VCKVSNKDMTVEIPSILLV 380
V ++ + + L
Sbjct: 75 VMELFDGKTGHQKTVDLSG 93
Score = 34.8 bits (80), Expect = 0.064
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEI 40
+ WS +G ++ R G L+I D GKY E+
Sbjct: 35 VNWSH-NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Score = 33.7 bits (77), Expect = 0.14
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV--LRITNARLQDSGKYKCE 39
+ W + + L ++ G I DSGKY
Sbjct: 149 VSWLK-NEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLV 192
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 39.8 bits (92), Expect = 0.002
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKR----SNGHVLPFGAFSRENTLTLQEIKN 355
P S A G ++LTC+ ++W + NG V G +TLT+ +
Sbjct: 7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEG---TTSTLTMNPVSF 63
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
+ Y+C + + +E + + S P + LS
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLS 100
Score = 32.1 bits (72), Expect = 0.49
Identities = 6/60 (10%), Positives = 14/60 (23%), Gaps = 5/60 (8%)
Query: 4 IKWSRADGLPLQRYAE----GNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERM 59
W PL + L + + Y C + +++ +
Sbjct: 33 FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSF 91
Score = 29.0 bits (64), Expect = 4.5
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 15/86 (17%)
Query: 309 GSKITLTCNNDLEAP---VEYTWSKRSNGHVLPFGAF----------SRENTLTLQEIKN 355
G IT+ C+ P +E K H++ F ++ +T +
Sbjct: 106 GKPITVKCSVADVYPFDRLEIDLLK--GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE 163
Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVT 381
+ VC+ ++ +
Sbjct: 164 DIGKVLVCRAKLHIDEMDSVPTVRQA 189
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 288 TPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAF 342
+ S P F G + C + P + +W +G + +
Sbjct: 2 SSGSSGFRPHFLQAPGDLTVQEGKLCRMDC----KVSGLPTPDLSWQL--DGKPVRPDSA 55
Query: 343 SR-------ENTLTLQEIKNSDAGMYVCKVSNK 368
+ ++L ++ + + DAG+Y C +N+
Sbjct: 56 HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88
Score = 33.5 bits (77), Expect = 0.062
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV--LRITNARLQDSGKYKC 38
+ W DG P++ E V L I +D+G Y C
Sbjct: 41 LSWQL-DGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.5 bits (91), Expect = 0.002
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI-KNSDAGMYVCKVSN 367
G+ + LTC L++ W K NG LP + L LQ+ + D+G YVC
Sbjct: 14 GTSVELTC--PLDSDENLKWEK--NGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPA 66
Query: 368 KDMT 371
+
Sbjct: 67 SNKN 70
Score = 39.1 bits (90), Expect = 0.002
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
N V + + LTC + W K +G ++ + +NT L
Sbjct: 112 NLVQVDGSRGDGSVLLTCGLTDK---TIKWLK--DGSIISPLN-ATKNTWNLGNNAKDPR 165
Query: 359 GMYVCKVSNK 368
G Y C+ + +
Sbjct: 166 GTYQCQGAKE 175
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 38.1 bits (88), Expect = 0.002
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 18/72 (25%)
Query: 1 NAYIKWSRADGLPL----------QRYAEGNV------LRITNARLQDSGKYKCEIQGHD 44
N+ ++W G + +Y + + + N LQD G YKC
Sbjct: 30 NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDS 89
Query: 45 SFRGSDYVKLNV 56
+ VK+ V
Sbjct: 90 V--STKEVKVIV 99
Score = 35.4 bits (81), Expect = 0.015
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG-------------AFSRE 345
N T G +TL C L W S + + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMT 371
++T+ + D G+Y C + ++
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVS 91
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 25/89 (28%)
Query: 305 EAPYGSKITLTC------NNDLEAPVEYTWSKRSNGHVLPF-----------------GA 341
+A + L C N L V + W + N + +
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVF-WQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 342 FSREN-TLTLQEIKNSDAGMYVCKVSNKD 369
F ++ TL L ++ D G+Y C + +K
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
Score = 37.1 bits (86), Expect = 0.003
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 23 LRITNARLQDSGKYKCEIQGHDS 45
LR+ N +++D G Y+C I
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKP 93
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 38.6 bits (89), Expect = 0.002
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 15/127 (11%)
Query: 258 SGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCN 317
SG + F + + D + + + + S + G + L C
Sbjct: 2 SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQ 61
Query: 318 NDLEAPVEYTWSKRSNGHVLPFGAF--------------SRENTLTLQEIKNSDAGMYVC 363
WS + L FG E ++++ + +D G Y C
Sbjct: 62 VKDHEDSSLQWSNPA-QQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Query: 364 KVSNKDM 370
+ +
Sbjct: 121 SIFTMPV 127
Score = 36.7 bits (84), Expect = 0.010
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ I+N L D G+Y C I + + V
Sbjct: 105 ISISNVALADEGEYTCSIFTMPV--RTAKSLVTV 136
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGA---FSREN 346
S+ A F ++ + TC E P TW K L S+E
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRK--GLLELRASGKHQPSQEG 60
Query: 347 ---TLTLQEIKNSDAGMYVCKVSN 367
LT+ ++ +D+ Y C +
Sbjct: 61 LTLRLTISALEKADSDTYTCDIGQ 84
Score = 35.0 bits (81), Expect = 0.013
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
+ W + L L+ ++ EG L I+ DS Y C+I G R +L
Sbjct: 39 VTWRK-GLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI-GQAQSRA----QLL 92
Query: 56 VE 57
V+
Sbjct: 93 VQ 94
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 37.4 bits (87), Expect = 0.002
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN--- 346
AF + G ++ E W K NG + F +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKL-EVKWYK--NGQEIRPSTKYIFEHKGCQR 63
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
L + + +D Y ++ + E+
Sbjct: 64 ILFINNCQMTDDSEYYVTAGDEKCSTEL 91
Score = 35.1 bits (81), Expect = 0.014
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+KW + +G ++ +Y +G L I N ++ D +Y
Sbjct: 39 VKWYK-NGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVT 81
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 38.0 bits (88), Expect = 0.002
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCN---NDLEAPVEYTWSK--------RSNGHVLPF 339
+ F G IT DL W K ++ H+
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 340 GAFSREN-----TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
F R + + + + K++ AG Y C+V+ KD L V +S
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 31.1 bits (70), Expect = 0.45
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 23 LRITNARLQDSGKYKCEIQ---GHDSFRGSDYVKLNVE 57
++I A+ +G Y+CE+ DS L V
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCS----FDLEVH 110
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 0.002
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFR-GSDYVKLNVE 57
+G+V L I N L D G Y C IQ +KL+++
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
Score = 29.5 bits (66), Expect = 1.6
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 30/104 (28%)
Query: 301 VSTKEAPYGSKITLTCNNDLEAPVEYT---WSK-------------RSNGHVLPFGAFSR 344
+ + G L C+ L W K R++ + + SR
Sbjct: 1 MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60
Query: 345 EN----------TLTLQEIKNSDAGMYVCKVSNK----DMTVEI 374
+L ++ + D G Y C++ D +E+
Sbjct: 61 YQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLEL 104
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 39.3 bits (92), Expect = 0.002
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAF---- 342
S +AP + G L+C + P+ + W + G L
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSC----QIVGRPLPDIKWYR--FGKELIQSRKYKMS 57
Query: 343 --SRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
R +TLT+ + D G+Y C +N+ VE S LL+ + P F
Sbjct: 58 SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT-PQFHPGY 107
Score = 37.7 bits (88), Expect = 0.006
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP----FGAFSRENTLTLQ 351
P + GS + L TW +L + E+ L
Sbjct: 105 PGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH--GQKLLQNSENITIENTEHYTHLV 162
Query: 352 EIKN----SDAGMYVCKVSNKDMTVEIPSILLVTD 382
+KN + AG Y ++SN TV+ + + D
Sbjct: 163 -MKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196
Score = 36.6 bits (85), Expect = 0.015
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 4 IKWSRADGLPLQ---RY---AEGN--VLRITNARLQDSGKYKCEIQ---GHDSFRGSDYV 52
IKW R G L +Y ++G L + +D G Y C G
Sbjct: 39 IKWYR-FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS---- 93
Query: 53 KLNVE 57
KL ++
Sbjct: 94 KLLLQ 98
Score = 30.8 bits (70), Expect = 1.1
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQ---RY-----AEGNVLRITNA-RLQDSGKYKCE 39
+ W LQ L + N R +GKYK +
Sbjct: 135 MTWFH-GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---T 347
F + +EA G+ L C +L W K L G ++
Sbjct: 19 PIKFTEGLRNEEATEGATAVLRC--ELSKMAPVEWWK--GHETLRDGDRHSLRQDGARCE 74
Query: 348 LTLQEIKNSDAGMYVCKVSN 367
L ++ + DAG Y+C
Sbjct: 75 LQIRGLVAEDAGEYLCMCGK 94
Score = 35.4 bits (82), Expect = 0.015
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
++W + L+ R+ +G L+I +D+G+Y C
Sbjct: 49 VEWWK-GHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA------FSRENT 347
A + G +C+ D E TW + G VL A ++T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR--KGQVLSTSARHQVTTTKYKST 71
Query: 348 LTLQEIKNSDAGMYVCKVSNK 368
+ ++ SD G Y V N
Sbjct: 72 FEISSVQASDEGNYSVVVENS 92
Score = 36.2 bits (84), Expect = 0.007
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 9/43 (20%)
Query: 4 IKWSRADGLPLQ---RY-----AEGNVLRITNARLQDSGKYKC 38
+ W R G L R+ + I++ + D G Y
Sbjct: 46 VTWLR-KGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 38.8 bits (90), Expect = 0.003
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRS-------NGHVLPFGAFS------REN-TLTLQEIK 354
+T +++ E W K+ N F +F + +LT+ +
Sbjct: 10 YGNVTFHVPSNVPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
+SD Y + N T++ L V + V
Sbjct: 69 SSDEDEYEMESPNITDTMKF--FLYVLEMVS 97
Score = 36.8 bits (85), Expect = 0.010
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
S TLTC VE + L T+ + + CK N
Sbjct: 105 CSNATLTCEVLEGTDVELKLYQ--GKEHL-----RSLRQKTMSYQWTNLRAPFKCKAVN 156
Score = 34.1 bits (78), Expect = 0.077
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L I N D +Y+ E + L V
Sbjct: 62 LTIYNLTSSDEDEYEMESPNIT---DTMKFFLYV 92
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 39.2 bits (91), Expect = 0.003
Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 7/87 (8%)
Query: 561 DCSDLESSPVCAPKPCQNYGICY-PTDTSERGYNCSCLTGYSGDHCEKENNMCM--KGDV 617
+ C G C G +CE + C G V
Sbjct: 130 QELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGK--LIYGQYCECDTINCERYNGQV 187
Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
C G +C C G+ C
Sbjct: 188 CGGPGRG--LCFCGKCRCHPGFEGSAC 212
Score = 37.3 bits (86), Expect = 0.013
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 133 DSCNTCK-SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
+ +C+ + C G C C+C + + G+ C C +C
Sbjct: 131 ELEGSCRKDNNSIICSGLGDCVCG------QCLCHTSDVPGKL-IYGQYC---ECDTINC 180
Query: 192 QDVDGAM------------KCLCPIGTAGKRCEQ 213
+ +G + KC C G G C+
Sbjct: 181 ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQH 214
Score = 35.7 bits (82), Expect = 0.035
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 14/96 (14%)
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV----LGEPCYP 183
+ V V C+ + + LC C C G+ G C
Sbjct: 74 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELE 133
Query: 184 GACGDGSCQD--------VDGAMKCLCPIGTAGKRC 211
G+C + V G +CLC +
Sbjct: 134 GSCRKDNNSIICSGLGDCVCG--QCLCHTSDVPGKL 167
Score = 34.2 bits (78), Expect = 0.11
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 20/99 (20%)
Query: 561 DCSDLESSPVCA---PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE---------KE 608
D ++ P C ++ +C+ E G C C TGY G +CE +
Sbjct: 74 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECG-ICRCDTGYIGKNCECQTQGRSSQEL 132
Query: 609 NNMCMK---GDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
C K +C G C +CLC P
Sbjct: 133 EGSCRKDNNSIICSGLGDC----VCGQCLCHTSDVPGKL 167
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 18/72 (25%)
Query: 1 NAYIKWSRADGLPL----------QRYAEGN------VLRITNARLQDSGKYKCEIQGHD 44
N ++WS L R + +++ L D G+Y C +
Sbjct: 35 NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMP 94
Query: 45 SFRGSDYVKLNV 56
+ L V
Sbjct: 95 V--KTSKAYLTV 104
Score = 35.2 bits (81), Expect = 0.017
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 20/93 (21%)
Query: 294 DAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------------A 341
P V+ E G LTC D WS + L F
Sbjct: 9 QFPLTQNVTVVE---GGTAILTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELV 64
Query: 342 FSRENTLTLQEIKN---SDAGMYVCKVSNKDMT 371
+ + L++ + + SD G Y C + +
Sbjct: 65 RASWHELSIS-VSDVSLSDEGQYTCSLFTMPVK 96
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 39.0 bits (91), Expect = 0.003
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 20/96 (20%)
Query: 287 ATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGA 341
P K T+ C A E TW K + +
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLC----AASGNPDPEITWFK--DFLPVDTSN 153
Query: 342 FSR---------ENTLTLQEIKNSDAGMYVCKVSNK 368
+ L +++ + SD G Y C +N
Sbjct: 154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189
Score = 36.7 bits (85), Expect = 0.017
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 4 IKWSRADGLPLQ-----------RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYV 52
I W + D LP+ R L+I + D GKY+C R S
Sbjct: 140 ITWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPA 198
Query: 53 KLNVE 57
L V
Sbjct: 199 NLYVR 203
Score = 36.3 bits (84), Expect = 0.024
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 25/116 (21%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSR----E 345
P F + G + C +A + W+K G + F +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFIC----QATGDPRPKIVWNK--KGKKVSNQRFEVIEFDD 59
Query: 346 NTLTLQEIKN----SDAGMYVCKVSNKDMTVEIPSILLVTD------SVPLFTQKP 391
+ ++ I+ D +Y C SN + + + L V P P
Sbjct: 60 GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP 115
Score = 31.7 bits (72), Expect = 0.61
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 18/77 (23%)
Query: 4 IKWSRADGLPLQ-------RYAEGN--VLRITNARL-QDSGKYKCE---IQGHDSFRGSD 50
I W++ G + + +G+ VLRI R +D Y+C G S
Sbjct: 38 IVWNK-KGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS--- 93
Query: 51 YVKLNVERMMFVDGIGP 67
+L V R + P
Sbjct: 94 -TRLTVLREDQIPRGFP 109
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 38.7 bits (90), Expect = 0.003
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
S TLTC VE + L T+ + + CK N
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQ--GKEHLRSL-----RQKTMSYQWTNLRAPFKCKAVN 166
Score = 37.9 bits (88), Expect = 0.005
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 19/95 (20%)
Query: 309 GSKITLTCNNDLEAPVE-YTWSKRSNGHVL----------PFGAFS-REN------TLTL 350
GS +TLT A + TW +N +L F R + L +
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRI 73
Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
+ D G Y ++ ++ + V + V
Sbjct: 74 YNVSKEDRGDYYMRMLHETEDQWK-ITMEVYEMVS 107
Score = 33.7 bits (77), Expect = 0.12
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
LRI N +D G Y + + + + V
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHETEDQWK--ITMEV 102
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 284 TGSATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF 342
+GS+ P P+ ++ G ++ + E + W K NG L
Sbjct: 3 SGSSGP------VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMK--NGVELTREDS 53
Query: 343 SREN----------TLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
+ L ++ D G Y + E+
Sbjct: 54 FKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAEL 95
Score = 33.8 bits (78), Expect = 0.042
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 1 NAYIKWSRADGLPLQ-------RY---AEGNV--LRITNARLQDSGKYKCE 39
A + W + +G+ L RY +G L ++ +D G+Y+
Sbjct: 36 GAQVMWMK-NGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 36.9 bits (86), Expect = 0.003
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
P F G + + P + +W NG + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDF----KVSGLPAPDVSWYL--NGRTVQSDDLHKMIVSE 58
Query: 345 --ENTLTLQEIKNSDAGMYVCKVSNK 368
++L + ++ SDAG Y C N+
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNR 84
Score = 34.2 bits (79), Expect = 0.027
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV--LRITNARLQDSGKYKC 38
+ W +G +Q +E + L R D+G Y C
Sbjct: 37 VSWYL-NGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 38.9 bits (90), Expect = 0.003
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 25/110 (22%)
Query: 306 APYGSKITLTCNND---LEAPVEYTWSKRSNGHVLPFG---------------------A 341
A G ++TLT L +E +W K G
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 342 FSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
+ L + S G Y+C++ + V L V +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHS 111
Score = 33.8 bits (77), Expect = 0.12
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKN- 355
+ P S +T+TC + W P A + +L++ +
Sbjct: 112 ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSL 171
Query: 356 --SDAGMYVCKVSN 367
C N
Sbjct: 172 PKPWHLPVTCVGKN 185
Score = 31.9 bits (72), Expect = 0.62
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 4 IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
I+W + R A L +T A + G Y C ++
Sbjct: 50 IEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMK 87
Score = 29.2 bits (65), Expect = 4.3
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 11/47 (23%)
Query: 3 YIKWSRADG-LPLQRYAEGNV----------LRITNARLQDSGKYKC 38
+++W +G P A G V + C
Sbjct: 135 HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 302 STKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHVL-----------PFG---AFSRE 345
A G I L C+ + + W ++ + F A
Sbjct: 11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG 70
Query: 346 NTLTLQEIKNSDAGMYVCKVSN 367
LTLQ + +D G Y C
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHT 92
Score = 34.1 bits (78), Expect = 0.038
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 23 LRITNARLQDSGKYKCEIQ--GHDSFRGSDYVKLNV 56
L + + + D+G+Y C ++ G + L V
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGR--IFLEV 106
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 38.8 bits (90), Expect = 0.003
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 20/97 (20%)
Query: 309 GSKITLTCNNDLEAPVEY-TWSKR-------------------SNGHVLPFGAFSRENTL 348
G +TL V + TW +N F++ +L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
L +K D G Y ++S K L + +
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR 109
Score = 38.0 bits (88), Expect = 0.005
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAP-VEYTWSKRSNGHVLPFGAFSRENTLTL-QEI 353
S ++ LTC+ + V + W N S + LT+ +
Sbjct: 111 IQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGN-------TLSSQPNLTVSWDP 163
Query: 354 KNSDAGMYVCKVSN 367
+ S Y C N
Sbjct: 164 RISSEQDYTCIAEN 177
Score = 36.5 bits (84), Expect = 0.018
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
L+++N +++D+G Y+ +I S + S Y +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 39.7 bits (93), Expect = 0.003
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKNS 356
+ G L C + +W + + R + TL +
Sbjct: 349 ADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 357 DAGMYVCKVSN 367
D GMY C VSN
Sbjct: 408 DTGMYTCMVSN 418
Score = 34.7 bits (80), Expect = 0.11
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 4 IKWSRADGLPL------QRY--AEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDY--VK 53
+ W +G + R L TN +QD+G Y C + G+
Sbjct: 372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS---VGNTTASAT 428
Query: 54 LNV 56
LNV
Sbjct: 429 LNV 431
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 38.7 bits (89), Expect = 0.003
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
P C+N G C C C G+ G HCE
Sbjct: 145 TCQQAECPGGCRNGGFCNERRI------CECPDGFHGPHCEG 180
Score = 37.6 bits (86), Expect = 0.008
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVD 195
++ + I G T + P + + C G G C +
Sbjct: 113 QDGVAAFEVDVIVM-------NSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---N 162
Query: 196 GAMKCLCPIGTAGKRCEQKI 215
C CP G G CE
Sbjct: 163 ERRICECPDGFHGPHCEGTK 182
Score = 37.6 bits (86), Expect = 0.008
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 7/78 (8%)
Query: 575 PCQNYGICYPTDT----SERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
PC + L K C+NGG C
Sbjct: 108 PCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR-- 165
Query: 631 YECLCSLGYAPPNCAKRV 648
C C G+ P+C
Sbjct: 166 -ICECPDGFHGPHCEGTK 182
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 40.1 bits (93), Expect = 0.003
Identities = 21/188 (11%), Positives = 41/188 (21%), Gaps = 27/188 (14%)
Query: 240 KVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFN 299
+ L ++ +++ + G ++ P F
Sbjct: 122 RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT------------PHFL 169
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENT------LTLQE 352
+ E G T C+ + P ++ +
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 229
Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELS 412
DAG Y C + + LV P+ P T + +
Sbjct: 230 TTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT--------YLWIQ 281
Query: 413 FKPTDYNG 420
NG
Sbjct: 282 LNANSING 289
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 36.5 bits (85), Expect = 0.004
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 17/85 (20%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA---FSREN 346
P + S +A P W+K +G + G S +
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAV----KATGEPRPTAIWTK--DGKAITQGGKYKLSEDK 59
Query: 347 ---TLTLQEIKNSDAGMYVCKVSNK 368
L + + SD+G+Y C V N
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNS 84
Score = 34.6 bits (80), Expect = 0.021
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY-----AEGNVLRITNARLQDSGKYKCE 39
W++ DG + +Y G L I DSG Y C
Sbjct: 38 AIWTK-DGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 39.0 bits (90), Expect = 0.004
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVD 195
TC +++H C + C+D AT G+ C C ++G+ G C +GS Q V+
Sbjct: 6 QTCANNRHQ-CSVHAECRDYAT--GFCCRCVANYTGN-----GRQCVA----EGSPQRVN 53
Query: 196 GAMKCLCPIGTAG 208
G +K +G++
Sbjct: 54 GKVKGRIFVGSSQ 66
Score = 34.0 bits (77), Expect = 0.16
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGD--HCEKENNMCMKGDVCKNGGMCKVTPD--SY 631
C + C T G+ C C+ Y+G+ C E + K + +
Sbjct: 15 CSVHAECRDYAT---GFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVF 71
Query: 632 ECLCSLGYAPPNCAKRVSIGSEVH 655
E Y N + + S +
Sbjct: 72 ENTDLHSYVVMNHGRSYTAISTIP 95
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 34.9 bits (80), Expect = 0.005
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
N C + N CI+ G C+ TC C + G+RC
Sbjct: 10 NPCNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGERC 47
Score = 27.6 bits (61), Expect = 2.0
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 575 PC----QNY---GIC-YPTDTSERGYNCSCLTGYSGDHCEKE 608
PC QN+ G C Y C C Y G+ C ++
Sbjct: 11 PCNAEFQNFCIHGECKYIEHLEA--VTCKCQQEYFGERCGEK 50
Score = 26.4 bits (58), Expect = 5.4
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 180 PC---YPGACGDGSCQDVDGAMK--CLCPIGTAGKRCEQK 214
PC + C G C+ ++ C C G+RC +K
Sbjct: 11 PCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGEK 50
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 36.9 bits (85), Expect = 0.006
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L + ++D G Y CE L V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.6 bits (66), Expect = 2.0
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 327 TWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
++ A ++ TL L + D G Y C+ +
Sbjct: 74 SFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFAT 114
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 39.0 bits (91), Expect = 0.006
Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP----FGAFSREN--TLTLQEIKNSDA 358
E G C +P TW K + L + N LT+ +K D
Sbjct: 493 EVGEGQSANFYCRVIASSPPVVTWHK--DDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 550
Query: 359 GMYVCKVSNKDMTVEIPSILLVT 381
G Y + N T E L VT
Sbjct: 551 GEYTVRAKNSYGTKEEIVFLNVT 573
Score = 29.8 bits (67), Expect = 4.2
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 4 IKWSRADGLPLQ-------RYAEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
+ W + D L+ RY + L I + D G+Y + + + V LN
Sbjct: 514 VTWHK-DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK-EEIVFLN 571
Query: 56 V 56
V
Sbjct: 572 V 572
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 38.1 bits (88), Expect = 0.007
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAP-VEYTWSKRSNGHVLPF----------GAFSRENTL 348
+ I L C + P + WS + G +P G ++ ++
Sbjct: 124 LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSN-NKGENIPTVEAPVVADGVGLYAVAASV 182
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
++ S C + + + +E + + + D
Sbjct: 183 I---MRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
Score = 35.8 bits (82), Expect = 0.037
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 19 EGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
G LRI N DSGKY C Q F V+L
Sbjct: 80 AGKAALRIHNVTASDSGKYLCYFQ-DGDFYEKALVELK 116
Score = 34.3 bits (78), Expect = 0.095
Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 27/113 (23%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEA---PVEYTWSKRSNG---HVLPFGAFSREN------- 346
P A G L C+ +E W S +V G +
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 347 --------------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
L + + SD+G Y+C + D + L V
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS 122
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.8 bits (89), Expect = 0.007
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 15/122 (12%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEA-PVEYTWSK--------------RSNGHVLPFG 340
P A G + + C+ + E W K + +
Sbjct: 444 PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD 503
Query: 341 AFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTL 400
SR +LTL + +D G Y C V E ++ + + + +S
Sbjct: 504 ENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAA 563
Query: 401 TD 402
D
Sbjct: 564 PD 565
Score = 38.1 bits (87), Expect = 0.013
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRS-------NGHVLPFGAFSRENTLTLQEIKNSD 357
+ K PV S + G ++ + +++ SD
Sbjct: 137 KTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSD 196
Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPL 392
AG Y+C+ + + + + L V P + L
Sbjct: 197 AGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 37.3 bits (85), Expect = 0.024
Identities = 50/413 (12%), Positives = 121/413 (29%), Gaps = 60/413 (14%)
Query: 22 VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAF----- 76
V+ I DSG+YKC + + D + ++ ++ +
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 77 ---QGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVD 133
+ + +Y + S+G+ N RL T LF + + ++ +
Sbjct: 136 FKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLS 195
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
DA Y C + ++ + + P D
Sbjct: 196 --------------------DAGQ---YLCQAGDDSNSNKKNADLQVLKPEPELVYE--D 230
Query: 194 VDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFK--VSLRLNPRDVR 251
+ G++ C + K Q + ++ + K F+ + L +D
Sbjct: 231 LRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS 289
Query: 252 DGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSK 311
+++ + +D G ++ A + ++ + + ++ + + GS
Sbjct: 290 FSVVITGLRKEDA-GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS 348
Query: 312 ITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----------------------TL 348
+ + C + + + G ++ T+
Sbjct: 349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTV 408
Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLT 401
L ++ + DAG Y C + + I ++ L ++ + TL
Sbjct: 409 ILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLK 461
Score = 35.4 bits (80), Expect = 0.077
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
L + D G Y C ++ + + V + VE
Sbjct: 511 LTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 31.1 bits (69), Expect = 1.8
Identities = 6/70 (8%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
+ + ++ D+G Y C + + + L P + ++
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSF-DVSLEVSQGPGLLNDT-KVYTVDLGRTVTIN 133
Query: 407 FSIELSFKPT 416
+
Sbjct: 134 CPFKTENAQK 143
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 35.8 bits (83), Expect = 0.007
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSREN--- 346
F + E G TL C + + APV W +VL G +E
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPV--KWCY--GNNVLRPGDKYSLRQEGAML 63
Query: 347 TLTLQEIKNSDAGMYVCKVSNK 368
L ++ ++ D+G Y C ++
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGDQ 85
Score = 35.8 bits (83), Expect = 0.009
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCE 39
+KW L+ +Y EG + L + N R QDSG+Y C
Sbjct: 39 VKWCY-GNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 37.7 bits (87), Expect = 0.009
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGA 75
+ GN L+IT+ +LQD+G Y+C I + VK+N I +
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Score = 35.7 bits (82), Expect = 0.040
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPF-----------GAFSR 344
N P S+ LTC + E W S+ VL F+
Sbjct: 118 NKINQRILVVDPVTSEHELTCQAEGYPKAEVIW-TSSDHQVLSGKTTTTNSKREEKLFNV 176
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
+TL I + ++ C D + L++ +
Sbjct: 177 TSTLR---INTTTNEIFYCTFRRLDPEENHTAELVIPE 211
Score = 34.6 bits (79), Expect = 0.096
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 27/98 (27%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEY-----TWSKRS-------NGHVLPFG------- 340
P YGS +T+ C +E ++ W +G
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 341 --AFSREN------TLTLQEIKNSDAGMYVCKVSNKDM 370
++ L + ++K DAG+Y C +S
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGA 104
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.0 bits (83), Expect = 0.009
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 16 RYAEGNV-LRITNARLQDSGKYKCEIQGHDSFR-GSDYVKLNVE 57
+EG+V L I N+ DSG Y C ++ F L V+
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK 110
Score = 30.3 bits (68), Expect = 0.81
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 308 YGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLTLQEIKNSDAGMYVCKVS 366
G + C N L + + + + G S + +LT++ SD+G+Y C+V
Sbjct: 34 RGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVE 93
Query: 367 NK----DMTVEIPSILLVTDSVP 385
D V S+ + + VP
Sbjct: 94 IPGWFNDQKVTF-SLQVKPELVP 115
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 35.7 bits (82), Expect = 0.010
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDY-VKLNVER 58
+EGNV L I N + D G Y C ++ +F DY +++ E
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEL 112
Score = 30.3 bits (68), Expect = 0.77
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLTLQEIKNSDAGMYVCKVSN 367
G C L YT + + N G S N +LT++ D G Y C V
Sbjct: 36 GECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEI 95
Query: 368 KDMTVEIPSILLVT-DSVP 385
+ +L V + VP
Sbjct: 96 PGAFHFVDYMLEVKPELVP 114
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 34.9 bits (81), Expect = 0.010
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 24/81 (29%)
Query: 571 CA--PKPCQNYGICYPTDTSERGYNCSCLTGYS----GDHCEK----ENNMCMKGDVCKN 620
C+ P C +C + C C GY CE NMC +C N
Sbjct: 6 CSLKPSICGT-AVCKNIPGD---FECECPEGYRYNLKSKSCEDIDECSENMC--AQLCVN 59
Query: 621 GGMCKVTPDSYECLCSL--GY 639
P Y C C G+
Sbjct: 60 ------YPGGYTCYCDGKKGF 74
Score = 34.9 bits (81), Expect = 0.011
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 15/79 (18%)
Query: 147 INNGLCQDAA---TRIGYTCICPPGFS----GDRCSVLGEPCYPGACGDGSCQDVDGAMK 199
+ +C A + C CP G+ C + E C C C + G
Sbjct: 8 LKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDE-CSENMC-AQLCVNYPGGYT 65
Query: 200 CLCPIGTA------GKRCE 212
C C K CE
Sbjct: 66 CYCDGKKGFKLAQDQKSCE 84
Score = 31.5 bits (72), Expect = 0.17
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGY 639
D C + ++C VCKN P +EC C GY
Sbjct: 4 DECSLKPSICGTA-VCKN------IPGDFECECPEGY 33
Score = 29.5 bits (67), Expect = 0.94
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIG----TAGKRCE 212
D CS+ P CG C+++ G +C CP G K CE
Sbjct: 4 DECSL-----KPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE 43
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 37.5 bits (86), Expect = 0.012
Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 24/105 (22%)
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV----LGEPCYP 183
+ V V C+ + + LC C C G+ G C
Sbjct: 174 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELE 233
Query: 184 GAC----------GDGSCQDVDGAMKCLCPIGTA------GKRCE 212
G+C G G C V G +CLC G+ CE
Sbjct: 234 GSCRKDNNSIICSGLGDC--VCG--QCLCHTSDVPGKLIYGQYCE 274
Score = 30.2 bits (67), Expect = 2.9
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 11/114 (9%)
Query: 520 HVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNY 579
+ ++ +V CI + L V + C C
Sbjct: 143 QINVPITFQVKVTATECIQEQSFVIRALGF-TDIVTVQVLPQCECRCRDQSRDRSLCHGK 201
Query: 580 GICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC 633
G C C TGY G +CE + + G C+ +S C
Sbjct: 202 GFLECG-------ICRCDTGYIGKNCECQTQGR---SSQELEGSCRKDNNSIIC 245
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 35.3 bits (82), Expect = 0.012
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN--- 346
P F + + G + ++ E +W + N + E
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR--NRQPVRPDQRRFAEEAEGGLC 62
Query: 347 TLTLQEIKNSDAGMYVCKVSNK 368
L + + DAG Y CK N+
Sbjct: 63 RLRILAAERGDAGFYTCKAVNE 84
Score = 32.6 bits (75), Expect = 0.099
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQR-------YAEGNV--LRITNARLQDSGKYKCE 39
+ W R + P++ AEG + LRI A D+G Y C+
Sbjct: 37 VSWLR-NRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK 80
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.4 bits (86), Expect = 0.012
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
LR+ R++D G Y C S + L V
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
Score = 31.2 bits (70), Expect = 1.0
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 27/106 (25%)
Query: 302 STKEAPYGSKITLTC-----NNDLEAPVEYTWSK----------------------RSNG 334
+ G +TL C N ++ + TW++ R
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 66
Query: 335 HVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
GA R+ +L + ++ D G Y C I L
Sbjct: 67 VAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLR 112
Score = 30.4 bits (68), Expect = 1.8
Identities = 13/94 (13%), Positives = 21/94 (22%), Gaps = 18/94 (19%)
Query: 295 APAFNPVSTKEAPY--GSKITLTCNNDLEA-----PVEYTWSKRSNGHVLPF-------G 340
A N ++ C + P + TW G G
Sbjct: 115 AKPQNTAEVQKVQLTGEPVPMARC----VSTGGRPPAQITWHSDLGGMPQTSQVPGFLSG 170
Query: 341 AFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI 374
+ + L D CKV ++
Sbjct: 171 TVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQ 204
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 36.9 bits (85), Expect = 0.013
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGP 67
N+ + I R D G Y+C + ++ V + D P
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP 111
Score = 34.6 bits (79), Expect = 0.076
Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 29/146 (19%)
Query: 240 KVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFN 299
+S+ + +R SD+G + + ++ + F+ + + L
Sbjct: 64 NLSIVI--LALR--------PSDEGT--YECVVLKYEKDAFKREHLAEVTLSVKADFPTP 111
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPF-----------GAFSRENT 347
+S E P + + C+ P +W + NG L ++ +
Sbjct: 112 SISDFEIPTSNIRRIICSTSGGFPEPHLSWLE--NGEELNAINTTVSQDPETELYAVSSK 169
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVE 373
L N ++C + + V
Sbjct: 170 LDFNMTTNHS---FMCLIKYGHLRVN 192
Score = 33.0 bits (75), Expect = 0.22
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 21/89 (23%)
Query: 301 VSTKEAPYGSKITLTC----NNDLEAPVEYTWSKRSNG-HVLPFG------------AFS 343
V TL+C + + A W K + G F
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 344 RENTLTLQEIKN---SDAGMYVCKVSNKD 369
N L++ I SD G Y C V +
Sbjct: 61 ITNNLSIV-ILALRPSDEGTYECVVLKYE 88
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 35.3 bits (81), Expect = 0.014
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 19 EGNV-LRITNARLQDSGKYKCEIQGHDSFR-GSDYVKLNVER 58
G V L I+N DSG Y C I+ F V+L + R
Sbjct: 70 FGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
Score = 29.2 bits (65), Expect = 2.2
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 29/98 (29%)
Query: 306 APYGSKITLTCN--NDLEAPVEYTWSK-------------RSNGHVLPFGAFSR------ 344
G +TL C+ + ++ W K R++G + ++
Sbjct: 8 GFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK 67
Query: 345 ----ENTLTLQEIKNSDAGMYVCKVSNK----DMTVEI 374
E +LT+ D+G+Y C++ D+ +
Sbjct: 68 VQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNV 105
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 35.1 bits (80), Expect = 0.015
Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 13/83 (15%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD----------HCEKENNMCMKGDVCK 619
C K C C+ C CL Y + C + N C C
Sbjct: 6 QCVKKQCPQNSGCFRHLDERE--ECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCT 63
Query: 620 NGGMCKVTPDSYECLCSLGYAPP 642
C C+ + P
Sbjct: 64 EEDSGS-NGKKITCECTKPDSYP 85
Score = 27.4 bits (60), Expect = 5.8
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 12/78 (15%)
Query: 142 KHNNCINNGLCQDAATRIGYTCICPPGFSGD--RCSVLGEP--------CYPGA-CGDGS 190
C N C C C + + +C P C A C +
Sbjct: 8 VKKQCPQNSGCFRHLDER-EECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEED 66
Query: 191 CQDVDGAMKCLCPIGTAG 208
+ C C +
Sbjct: 67 SGSNGKKITCECTKPDSY 84
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 35.2 bits (81), Expect = 0.016
Identities = 9/54 (16%), Positives = 12/54 (22%), Gaps = 12/54 (22%)
Query: 325 EYTWSKRSNGHVL----------PFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
W NG L E L + + + G Y N
Sbjct: 36 TLHWLH--NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNP 87
Score = 30.9 bits (70), Expect = 0.61
Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 13/48 (27%)
Query: 4 IKWSRADGLPLQ------------RYAEGNVLRITNARLQDSGKYKCE 39
+ W +G PL+ L ++G Y
Sbjct: 37 LHWLH-NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 83
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 35.2 bits (81), Expect = 0.017
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
LR+ R++D G Y C S + L V
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 34.0 bits (78), Expect = 0.047
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 324 VEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
Y+ SKR GA R +L + ++ D G Y C
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVT 100
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 36.7 bits (84), Expect = 0.017
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
L + A++ D Y C ++ + +LNV
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Score = 32.1 bits (72), Expect = 0.62
Identities = 14/90 (15%), Positives = 17/90 (18%), Gaps = 25/90 (27%)
Query: 305 EAPYGSKITLTCN-NDLEAPVEYTWSK------------------------RSNGHVLPF 339
E G + L C W P
Sbjct: 11 EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 340 GAFSRENTLTLQEIKNSDAGMYVCKVSNKD 369
+ L L E + D YVC V
Sbjct: 71 YQLDSQGRLVLAEAQVGDERDYVCVVRAGA 100
Score = 29.8 bits (66), Expect = 3.4
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 27/106 (25%)
Query: 299 NPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPF------------------ 339
N + ++ TCN + + TW + NG L
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR--NGQRLEVPVEMNPEGYMTSRTVREA 181
Query: 340 -GAFSRENTLTLQEIKNSDAGMYVCKVS-----NKDMTVEIPSILL 379
G S +TL L+ K+ + C + ++ P+ L
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 37.5 bits (86), Expect = 0.019
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 10/104 (9%)
Query: 561 DCSDLESSPV-------CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM 613
DC D P+ C +C GY C C G+ + ++
Sbjct: 280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCEDIDE 336
Query: 614 KGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFL 657
D +C Y+C C G+ K + +L
Sbjct: 337 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 380
Score = 31.7 bits (71), Expect = 1.1
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+ C S +G C ++ R C + C+V C DG+C
Sbjct: 172 DSSPC--SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNC-- 227
Query: 194 VDGAMKC 200
+ G+ +C
Sbjct: 228 IHGSRQC 234
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 37.0 bits (85), Expect = 0.020
Identities = 9/72 (12%), Positives = 16/72 (22%), Gaps = 3/72 (4%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK---RSNGHVLPFGAFSRENTLTLQEIKN 355
V G + L C + + W + V+ G +
Sbjct: 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD 222
Query: 356 SDAGMYVCKVSN 367
+ C N
Sbjct: 223 LNRKNVTCWAEN 234
Score = 33.2 bits (75), Expect = 0.32
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 322 APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
+ + T + R L L + + + G Y +N
Sbjct: 285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Score = 29.7 bits (66), Expect = 3.9
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 22 VLRITNARLQDSGKYKC 38
LR+ ++G Y
Sbjct: 310 CLRLNQPTHVNNGNYTL 326
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 34.6 bits (79), Expect = 0.021
Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 565 LESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDH---CEKENNMCMKGDVCKNG 621
+ S C CY CL + D N C KNG
Sbjct: 1 MSSEHRCIDTNVPENAACYRYLDGTE--EWRCLLYFKEDAGKCVPAPNMTCKD----KNG 54
Query: 622 G-----MCKVT-PDSYECLCSLGYAPP 642
G CK+ + C C+ + P
Sbjct: 55 GCAPEAECKMNDKNEIVCKCTKEGSEP 81
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 36.2 bits (83), Expect = 0.021
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 3/75 (4%)
Query: 306 APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKV 365
G + L C+ + P + G L VC
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLV---DIREPETQPVCFF 70
Query: 366 SNKDMTVEIPSILLV 380
T++ ++
Sbjct: 71 RCARRTLQARGLIRT 85
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune
system; 1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.4 bits (79), Expect = 0.025
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 23 LRITNARLQDSGKYKCEIQGHDS 45
L I+N R +D G Y +
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETE 97
Score = 34.1 bits (78), Expect = 0.038
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEY-TWSKRSNGHVLPFGAFSRENT---------- 347
++ GS +TL + D P TW N +L + S +
Sbjct: 11 PDINAYT---GSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVY 67
Query: 348 -------LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV 384
L + ++ D G Y +V + L V D V
Sbjct: 68 LEENNGALHISNVRKEDKGTYYMRVLRETENELK-ITLEVFDPV 110
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 36.6 bits (83), Expect = 0.025
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAG 359
+ G + LTC+ E + TW+ + VL G TLT+Q + DAG
Sbjct: 12 ELDWYPDAPGEMVVLTCDTPEEDGI--TWTLDQSSEVLGSG-----KTLTIQVKEFGDAG 64
Query: 360 MYVCKVSNK 368
Y C +
Sbjct: 65 QYTCHKGGE 73
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 35.1 bits (80), Expect = 0.026
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
T++ + D G+Y V N ++ + V D
Sbjct: 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 31.6 bits (71), Expect = 0.48
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 22 VLRITNARLQDSGKYKCEIQ---GHDS 45
+ + A +D G Y ++ G D
Sbjct: 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 36.7 bits (85), Expect = 0.029
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+ ++ Q C F D + E A +CQ
Sbjct: 272 SKALSGFSLQSCRH--SIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQK 319
Score = 31.4 bits (71), Expect = 1.6
Identities = 5/49 (10%), Positives = 10/49 (20%), Gaps = 8/49 (16%)
Query: 596 CLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
+G +K +G + S C +
Sbjct: 260 SESGLPSTRIKKSK--------ALSGFSLQSCRHSIPVFCHSSFYHDTD 300
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 35.6 bits (81), Expect = 0.033
Identities = 19/92 (20%), Positives = 29/92 (31%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAG 359
P G+ LTC + + + + + + LT++ S AG
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAG 72
Query: 360 MYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
VC S T + LLV T P
Sbjct: 73 TRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP 104
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.8 bits (79), Expect = 0.037
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMF-VDG 64
LR+T+ QD G+Y C++ L+ + ++ V G
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSI---RTEFGLDAKSVVLKVTG 133
Score = 31.4 bits (70), Expect = 0.52
Identities = 21/110 (19%), Positives = 29/110 (26%), Gaps = 36/110 (32%)
Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVE----------------------YTWSKRSNGHVL 337
+ E G + L C+ L + Y W G V
Sbjct: 10 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 69
Query: 338 P------FGAFS--------RENTLTLQEIKNSDAGMYVCKVSNKDMTVE 373
FG F TL L + D G Y C+V+ + E
Sbjct: 70 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 36.4 bits (83), Expect = 0.038
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 520 HVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS-DLESSPVCAPKPCQN 578
+ +++ V+ C+ +L + + C + + AP
Sbjct: 413 RINQTVTFWVSLQATHCLPEPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDG 472
Query: 579 YGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM 613
G + G CSC G G CE +
Sbjct: 473 QGHL------QCGV-CSCAPGRLGRLCESRGLENL 500
Score = 31.1 bits (69), Expect = 1.6
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 6/47 (12%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC 181
C+ + + G Q C C PG G C G
Sbjct: 459 CSDTQPQAPHCSDGQGHLQCG------VCSCAPGRLGRLCESRGLEN 499
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 33.9 bits (78), Expect = 0.040
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSR 344
S+ AP F + + G +T TC + W K + H
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNK 368
+L D G Y +N
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANP 88
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 4 IKWSRADGLPLQ--------RYAEGNV--LRITNARLQDSGKYKC 38
I W + DG + + L T + L D G Y
Sbjct: 40 IYWFK-DGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 36.3 bits (83), Expect = 0.041
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 554 VDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM 613
V +D +E C P+ C + ++ CL+ G C
Sbjct: 408 VKLEEDVDLGYVEDGTPCGPQMMCLEHRC--LPVASFNFST-CLSSKEGTIC------SG 458
Query: 614 KGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSE 653
G VC N +C+C+ + +C +
Sbjct: 459 NG-VCSNEL---------KCVCNRHWIGSDCNTYFPHNDD 488
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 34.1 bits (78), Expect = 0.044
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 15/57 (26%)
Query: 325 EYTWSKRSNGHVLPFGAFSR-------------ENTLTLQEIKNSDAGMYVCKVSNK 368
W NG VL +F L L + + + G Y +N
Sbjct: 31 SLRWLF--NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Score = 29.1 bits (65), Expect = 2.4
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 16/51 (31%)
Query: 4 IKWSRADGLPLQ---------------RYAEGNVLRITNARLQDSGKYKCE 39
++W +G L LR+ ++G Y
Sbjct: 32 LRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 81
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 35.8 bits (81), Expect = 0.049
Identities = 27/163 (16%), Positives = 45/163 (27%), Gaps = 25/163 (15%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG 621
+ S C P C +G C C C GY+ +N + +
Sbjct: 185 LDGVYISEPC-PSYCSGHGDCISGV-------CFCDLGYTAAQGTCVSNTP---NHSEMF 233
Query: 622 GMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFD 681
+ + G C ++ G ++F G G R T+ D
Sbjct: 234 DRFEGKLSPLWYKITGGQVGTGCGT-LNDGRSLYFNGLGK-----------REARTVPLD 281
Query: 682 FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLG 724
+ G + +GI ++YS D G
Sbjct: 282 TRNIRLVQFYIQIGSKT--SGITCIKPRARNEGLVVQYSNDNG 322
Score = 30.4 bits (67), Expect = 2.5
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 130 VGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
G+D + C +G C C C G++ + + + D
Sbjct: 183 FGLDGVY-ISEPCPSYCSGHGDCISG------VCFCDLGYTAAQGTCVSNTPNHSEMFDR 235
Query: 190 SCQDVDGAMKCLCPIGTAGKRC 211
+ + G G C
Sbjct: 236 -FEGKLSPLWYKITGGQVGTGC 256
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 33.4 bits (77), Expect = 0.050
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN--- 346
AP + ++ GS + E W K NG + + E+
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK--NGVKIERSDRIYWYWPEDNVC 62
Query: 347 TLTLQEIKNSDAGMYVCKVSNK 368
L ++++ D+ + K N
Sbjct: 63 ELVIRDVTGEDSASIMVKAINI 84
Score = 32.6 bits (75), Expect = 0.10
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 4 IKWSRADGLPLQR-------YAEGNV--LRITNARLQDSGKYKCE 39
+W + +G+ ++R + E NV L I + +DS +
Sbjct: 37 CEWYK-NGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 35.2 bits (81), Expect = 0.052
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA-----FSRENTLTLQEIKNSDAGMY 361
GS +TL C E EY + P+ ++ + I G Y
Sbjct: 17 TQGSPVTLRCQGGQET-QEYRLYR--EKKTAPWITRIPQELVKKGQFPIPSITWEHTGRY 73
Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
C + S + V KP
Sbjct: 74 RCYYGSDTAGRSESS-DPLELVVTGAYIKP 102
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.0 bits (77), Expect = 0.053
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 285 GSATPLYSNDAPAF---NPVSTKEAPYGSKITLTC---NNDLEAPVEYTWSK-------- 330
GS+ + + P S G + +L W K
Sbjct: 1 GSSGSSGAEEPTGVFLKKPDSV-SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS 59
Query: 331 RSNGHVLPFGAFSREN-----TLTLQEIKNSDAGMYVCKVSNKD 369
+S + + + L + ++ D G Y +V KD
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD 103
Score = 30.5 bits (68), Expect = 0.82
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
L I L D G Y+ E++ D+ S ++VE
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDVE 115
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 34.0 bits (78), Expect = 0.053
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 23 LRITNARLQDSGKYKC--EIQGHDSFRGSDYVKLNV 56
L + + + +DSG Y EI + + + V
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTV 116
Score = 27.5 bits (61), Expect = 7.7
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 329 SKRSNGHVLPFGAFSREN-TLTLQEIKNSDAGMYVCKV--SNKDMTVEIPSILL-VTD 382
KR G G + L L+++K D+G Y + S+ + +++ + VT
Sbjct: 61 DKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 33.9 bits (78), Expect = 0.053
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA-----FSR 344
AP F +K+ G + L C + P + W + N ++ F +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLEC----QISAIPPPKLFWKR--NNEMVQFNTDRISLYQD 68
Query: 345 EN---TLTLQEIKNSDAGMYVCKVSNK 368
TL ++++ DAG Y N+
Sbjct: 69 NTGRVTLLIKDVNKKDAGWYTVSAVNE 95
Score = 31.2 bits (71), Expect = 0.38
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 4 IKWSRADGLPLQ----RYA------EGNVLRITNARLQDSGKYKCE 39
+ W R + +Q R + L I + +D+G Y
Sbjct: 47 LFWKR-NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 35.2 bits (81), Expect = 0.064
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
G +TL C+ + K H+ F + + + + + AG Y C+ S+
Sbjct: 38 GGHVTLRCHYRHRFN-NFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96
Query: 369 DMTVEI-----PSILLVTDSVP 385
P +++VT +
Sbjct: 97 HSPTGWSAPSNPVVIMVTGNHR 118
Score = 32.9 bits (75), Expect = 0.40
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-------TLTLQEIKNSDAGMY 361
G ++ L C +D+ + K G + ++ + + AG Y
Sbjct: 133 GERVILQCWSDIMF-EHFFLHK--EGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTY 189
Query: 362 VCKVSN 367
C S
Sbjct: 190 RCYGSV 195
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 34.1 bits (78), Expect = 0.066
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-------EN 346
P F + E GS C + E W K + + + +
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK--DDNPVKESRHFQIDYDEEGNC 98
Query: 347 TLTLQEIKNSDAGMYVCKVSNK 368
+LT+ E+ D Y CK N
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNS 120
Score = 31.7 bits (72), Expect = 0.48
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 4 IKWSRADGLPLQR-------YAEGNV--LRITNARLQDSGKYKC 38
+ W + D P++ Y E L I+ D KY C
Sbjct: 73 VMWFK-DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.4 bits (76), Expect = 0.076
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1 NAYIKWSRADGLPLQRYAEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
+ + + + + +T+ R +DSG Y C I S V+ +
Sbjct: 62 SKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 34.5 bits (79), Expect = 0.086
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
G K+T C D + K + G + L + + G Y C S
Sbjct: 114 ISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 172
Query: 367 NKDMTVEIPS---ILLVTDSVP 385
+ PS LLVT +
Sbjct: 173 YNNHAWSFPSEPVKLLVTGDIE 194
Score = 34.1 bits (78), Expect = 0.15
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG-----AFSRENTLTLQEIKNSDAGMY 361
P ++T+ C + A VEY G + + + ++ + AG Y
Sbjct: 19 PKEKQVTICCQGNYGA-VEYQLHF--EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 75
Query: 362 VCKVSN 367
C
Sbjct: 76 SCIYRV 81
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 34.9 bits (80), Expect = 0.092
Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 17/140 (12%)
Query: 279 EFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTC--NNDLEAPVEYTWSK----RS 332
EF+ G+ + + + A ++ TC + + W K S
Sbjct: 102 EFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 161
Query: 333 NGHVLPF-----GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEI------PSILLVT 381
+ ++S +T + + +C+V++ + + S +
Sbjct: 162 DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRV 221
Query: 382 DSVPLFTQKPLSYLALPTLT 401
TQ+P+ +T
Sbjct: 222 PPTLEVTQQPVRAENQVNVT 241
Score = 29.1 bits (65), Expect = 5.7
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 295 APAFNPVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPF-----------GA 341
P V+ + +++ +TC ++ TW + NG+V G
Sbjct: 221 VPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLE--NGNVSRTETASTVTENKDGT 278
Query: 342 FSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
++ + L + + D C+V + S + + T+ +
Sbjct: 279 YNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSH-----DLKVSTRHHHHH 326
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 34.5 bits (79), Expect = 0.095
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKNSDAGMY 361
P + + C EA N G + + + + + AG Y
Sbjct: 21 PLDGSVKIQCQAIREAY-LTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRY 79
Query: 362 VCKVSN 367
C+
Sbjct: 80 QCQYRI 85
Score = 34.5 bits (79), Expect = 0.099
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
G I+LTC++ ++ +K + + +L + + +G+Y C
Sbjct: 120 GENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 179
Query: 369 DMTVE--IPS---ILLVTDSVP 385
PS L+VTDS+
Sbjct: 180 RSPYLWSFPSNALELVVTDSIH 201
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 33.0 bits (75), Expect = 0.10
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 23 LRITNARLQDSGKYKCEIQGHDS 45
L I++ R++D+G YK +I
Sbjct: 74 LVISDLRMEDAGDYKADINTQAD 96
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 32.9 bits (75), Expect = 0.10
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + +D+G+Y C + G + V LN+
Sbjct: 70 VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 34.1 bits (78), Expect = 0.11
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKNSDAGMY 361
G+ +T+ C LEA EY K G P+ + + ++ + AG Y
Sbjct: 17 SRGNSVTIRCQGTLEA-QEYRLVK--EGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRY 73
Query: 362 VCKVSN 367
C +
Sbjct: 74 RCYYYS 79
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 32.9 bits (75), Expect = 0.11
Identities = 16/98 (16%), Positives = 22/98 (22%), Gaps = 15/98 (15%)
Query: 306 APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--------ENTLTLQEIKN-- 355
G TL C + W K G + +L I +
Sbjct: 21 VSKGEPATLNCKAEGRPTPTIEWYK--GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 356 ---SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQK 390
D G+YVC N L +
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 34.4 bits (78), Expect = 0.11
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 3/76 (3%)
Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCK 364
P G + +TC+ + P L N + + +C
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL---LLPGNNRKVYELSNVQEDSQPMCY 66
Query: 365 VSNKDMTVEIPSILLV 380
+ D + L V
Sbjct: 67 SNCPDGQSTAKTFLTV 82
Score = 28.7 bits (63), Expect = 7.1
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 9/98 (9%)
Query: 309 GSKITLTCNNDLEAPVE---YTWSKRSNGHVL---PFGAFSRENTLTLQEIKNSDAGMYV 362
G +TL C + AP + L P E T T+ ++ +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLR--GEKELKREPAVGEPAEVTTTVLVRRDHHGANFS 158
Query: 363 CKVSNKDMTVEIPSILLVTDSVPLFTQ-KPLSYLALPT 399
C+ + + L T P + L +
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS 196
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 34.1 bits (77), Expect = 0.12
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNC--SCLTGYSGDHCEKENNMCMKGDVCKNGGM 623
+ C G ++ + L HC + C + C G
Sbjct: 30 VTRAECC-----ASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVE-CGPGKA 83
Query: 624 CKVTPDSYECLCSLGYAPPNCAKRV 648
C++ C C+ + +V
Sbjct: 84 CRMLGGRPRCECAPDCSGLPARLQV 108
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 33.6 bits (77), Expect = 0.12
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG-----AFSRENTLTLQEIKNSDAGMY 361
P ++T+ C + A VEY G + + + ++ + AG Y
Sbjct: 16 PKEKQVTICCQGNYGA-VEYQLHF--EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 72
Query: 362 VCKVSN 367
C
Sbjct: 73 SCIYRV 78
Score = 31.7 bits (72), Expect = 0.53
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
G K+T C D A + K + G + L + + G Y C S
Sbjct: 113 GEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 171
Query: 369 DMTVEIPS---ILLVT 381
+ PS LLVT
Sbjct: 172 NHAWSFPSEPVKLLVT 187
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 33.7 bits (77), Expect = 0.14
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIKNSDAGMY 361
+G+ +T+ C LEA EY K P+ + + ++ + AG Y
Sbjct: 17 SWGNSVTIWCQGTLEA-REYRLDK--EESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRY 73
Query: 362 VC 363
C
Sbjct: 74 RC 75
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 33.2 bits (76), Expect = 0.18
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
P +TL C Y K S+ + + L + +K S AG Y C
Sbjct: 20 PLEKPVTLRCQGPPGV-DLYRLEKLSSSR------YQDQAVLFIPAMKRSLAGRYRCSYQ 72
Query: 367 N 367
N
Sbjct: 73 N 73
Score = 30.2 bits (68), Expect = 1.7
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVC 363
G +TL C ++ K + + + + + +G Y C
Sbjct: 108 GGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 33.3 bits (75), Expect = 0.21
Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 238 KFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPA 297
+ + L + + + + + +D G + R + +++ + +
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDT-GSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 298 FNPVSTKEAPYGSKITLTC----NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
+ + G L+C + + P+ ++W+ + + P S E TLT +
Sbjct: 127 PDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPR-- 184
Query: 354 KNSDAGMYVCKVSN 367
C++
Sbjct: 185 PEDHGTNLTCQMKR 198
Score = 30.6 bits (68), Expect = 1.6
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFR---GSDYVKLNVERMMFVDGIGPFSGESQG 74
L I +AR++D+G Y ++ + + + L V ++ I G
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 32.9 bits (75), Expect = 0.27
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 298 FNPVSTKEAPYGSKITLTCN-NDLEAP--VEYTWSKRSNGHVLPF-------GAFSRENT 347
P + ++ GS+ LTC L V +TW+ S + G +S +
Sbjct: 9 HRP-ALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV 67
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPL 386
L + + C + + + + L + +
Sbjct: 68 LPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFR 106
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 30.1 bits (67), Expect = 0.28
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRC 174
C+N G+ + YTC C G+SGDRC
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRC 39
Score = 28.1 bits (62), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
P C N G+ ++ + Y C+C+ GYSGD C+
Sbjct: 4 PSSYDGYCLNGGVXMHIESLDS-YTCNCVIGYSGDRCQ 40
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.4 bits (68), Expect = 0.37
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKN-SDAGMYVCKVSN 367
G+ + LTC D + W K NG LP + L LQ+ D+G YVC
Sbjct: 14 GTSVELTCPLDSDE--NLKWEK--NGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPA 66
Query: 368 KD 369
+
Sbjct: 67 SN 68
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 32.7 bits (73), Expect = 0.38
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC----LTGYSGDHCEKENNMCMKGDV 617
C L + + C + G + T E + + + +C C +
Sbjct: 13 CQVLYKTELSKE-ECCSTGRLSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETC-ENVD 70
Query: 618 CKNGGMCKVTPDS-YECLCSLGYAPPNCAKRV 648
C G C++ + C+C+ + V
Sbjct: 71 CGPGKKCRMNKKNKPRCVCAPDCSNITWKGPV 102
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 32.7 bits (74), Expect = 0.40
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 329 SKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD--SVPL 386
+ R V P+ S + +L L I+ +AG Y C+V + + L V + L
Sbjct: 65 AFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL 124
Query: 387 FTQKPLSYLALPTLT 401
+
Sbjct: 125 LLDQVGMKENEDKYM 139
Score = 28.5 bits (63), Expect = 7.4
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
LR+ +L+++G+Y+CE+ + +E
Sbjct: 84 LRLPGIQLEEAGEYRCEVV---VTPLKAQGTVQLEV 116
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.5 bits (71), Expect = 0.40
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 25/94 (26%)
Query: 301 VSTKEAPYGSKITLTCN----NDLEAPVEYTWSKRSNGHVLPFGAFSREN---------- 346
+ T E GS L C+ A TW + + E
Sbjct: 17 IRTLE---GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 347 --------TLTLQEIKNSDAGMYVCKVSNKDMTV 372
L +++++ DA +YVC+V + V
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGV 107
Score = 29.5 bits (66), Expect = 1.5
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYV-----KLNVER 58
L I + R D+ Y C + G +L VE+
Sbjct: 83 LHIRDVRGHDASIYVCRV----EVLGLGVGTGNGTRLVVEK 119
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.3 bits (71), Expect = 0.44
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 3 YIKWSRADGLPLQRYAEGNV--LRITNARLQDSGKYKC--EIQGHDSFRGSDYVKLNV 56
+ + L+ Y + + +R+ N +++DSG Y+C + D ++L V
Sbjct: 56 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 32.9 bits (75), Expect = 0.48
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 142 KHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCL 201
N C N ++ Y P F + E GDG +D D A++
Sbjct: 60 VENFCRNPDGDEEGVW--CYVAGKPGDFGYCDLNYCEEAV-EEETGDGLDEDSDRAIEGA 116
Query: 202 C 202
Sbjct: 117 T 117
Score = 30.6 bits (69), Expect = 2.5
Identities = 6/66 (9%), Positives = 13/66 (19%), Gaps = 14/66 (21%)
Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC 633
PC + S + + + C+N + Y
Sbjct: 34 LPCLAWASAQAKALS---KHQDFNSAVQLVE-----------NFCRNPDGDEEGVWCYVA 79
Query: 634 LCSLGY 639
+
Sbjct: 80 GKPGDF 85
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 31.0 bits (70), Expect = 0.49
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ I DSG+YKC + + D V L V
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFD-VSLEV 109
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 32.5 bits (73), Expect = 0.51
Identities = 14/81 (17%), Positives = 19/81 (23%), Gaps = 4/81 (4%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
SC+ C + A C C E A +
Sbjct: 297 GSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHA----YDCYYDPEVDRREASQNQDNV 352
Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
G + C T G CE+
Sbjct: 353 YQGGGVCLDCQHHTTGINCER 373
Score = 29.8 bits (66), Expect = 3.9
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNC-SCLTGYSGDHCEKENNMCMKG 615
C P+ + + + G C C +G +CE+ C+ G
Sbjct: 327 CHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER----CLPG 377
Score = 29.5 bits (65), Expect = 4.7
Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 18/86 (20%)
Query: 570 VCAPKPCQNYGICYPTDTSERGY--NCSCLTGYSGDHCEK----------------ENNM 611
+ C + + C+C G C++ N
Sbjct: 262 IGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANE 321
Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSL 637
C + + C P+ S
Sbjct: 322 CQSCNCHGHAYDCYYDPEVDRREASQ 347
Score = 29.5 bits (65), Expect = 5.5
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE-PCYPGA-CGDGSCQDVDGAMKCL 201
T +S S+ G C+ A D ++C
Sbjct: 230 LRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCA 289
Query: 202 CPIGTAGKRCEQ 213
C T G C++
Sbjct: 290 CQHNTCGGSCDR 301
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 32.0 bits (72), Expect = 0.53
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 19/168 (11%)
Query: 677 TIAFDFVTDDKNA-LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
T+ +N + + N +G L +
Sbjct: 35 TVCQRIKPFHRNTGYIFSCATSNQDNQF--ITSMYVKSDGTLNLGLQVNASSNKYISCPI 92
Query: 736 PVNDGIKHSVNVTRINKFGSLE--VDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMT 793
+ G + V G + + G E+ G I+ G + +G +
Sbjct: 93 EIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKGHQISAGGTVVIGQEQD---KI 149
Query: 794 GGRY--VHPMSGLMMNIHIQN--------KHISNIGSSASSGLHVMPW 831
GG + SG + ++ + + +++ G V+ W
Sbjct: 150 GGGFEEQESWSGELSDLQVWDEALTTHQVSTVASCNGIRPRGN-VISW 196
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 31.6 bits (71), Expect = 0.55
Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 23/102 (22%)
Query: 561 DCSDLESSPVCAP-------------KPCQNYGICYPTD--------TSERGYNCSCLTG 599
DC C + C + C T +R C C
Sbjct: 32 DCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKN 91
Query: 600 YSGDHCEKENNMCMKGDVCKNGGMC-KVTPDS-YECLCSLGY 639
+ + C +C NG + C C G+
Sbjct: 92 QYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGF 133
Score = 29.3 bits (65), Expect = 3.0
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 134 SCNTCKSSKHNNCINNG-LCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP-GACGDG-- 189
SC+ C+ I++ + +D C C S C+ C +G
Sbjct: 62 SCSKCRKEMGQVEISSCTVDRDT------VCGCRKNQYRHYWSENLFQCFNCSLCLNGTV 115
Query: 190 --SCQDVDGAMKCLCPIGT 206
SCQ+ C C G
Sbjct: 116 HLSCQEKQNT-VCTCHAGF 133
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 31.8 bits (72), Expect = 0.58
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 15/91 (16%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-------NTLTLQEIKNSDAG 359
+ L C +D+ + + G E ++ + AG
Sbjct: 20 KSEETVILQCWSDVMFE-HFLLHR--EGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAG 76
Query: 360 MYVCKVSNKDMTVEI-----PSILLVTDSVP 385
Y C S ++ P +++
Sbjct: 77 TYRCYGSVTHSPYQVSAPSDPLDIVIIGLYE 107
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.5 bits (73), Expect = 0.69
Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
K INN T +CP C+ E C+P C GSC
Sbjct: 153 PGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHP-EC-LGSCS 210
Query: 193 DVDGAMKCL-CPIGTAGKRCEQK 214
D C+ C C
Sbjct: 211 APDNDTACVACRHYYYAGVCVPA 233
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 32.5 bits (73), Expect = 0.78
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 561 DCSD--LESSPVCAPKP--CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
DC D E C N G + + + GY C C G+ + ++ D
Sbjct: 298 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 357
Query: 617 VCKNGGMCKVTPDSYECLCSLGYAPPN 643
+C Y+C C G+
Sbjct: 358 PDTCSQLCVNLEGGYKCQCEEGFQLDP 384
Score = 31.3 bits (70), Expect = 1.7
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF--SGDRCSVLGEPCYPGACGDGSCQ 192
NN + +C D +IGY C+CP GF R + C C
Sbjct: 309 ECGTNECLDNNGGCSHVCND--LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCV 366
Query: 193 DVDGAMKCLCPIG 205
+++G KC C G
Sbjct: 367 NLEGGYKCQCEEG 379
Score = 30.6 bits (68), Expect = 2.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 160 GYTCICPPGF--SGDRCSVLGEPCYPG--ACGDGSCQDV----DGAMKCLC 202
G+ + +V G+ C C DG C DG+ +C
Sbjct: 2 GWKLRWTVALLLAAAGTAV-GDRCERNEFQCQDGKCISYKWVCDGSAECQD 51
Score = 30.2 bits (67), Expect = 3.5
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPG--ACGDGS 190
++C ++G C + + C C + P C G
Sbjct: 226 ENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE 285
Query: 191 CQDVDGAMKC 200
C + C
Sbjct: 286 C--ITLDKVC 293
Score = 29.0 bits (64), Expect = 8.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 136 NTCKSSKHNNCINNGLC----QDAATRIGYTCICPPGFS 170
N C+ + +N LC Q +TC CP G
Sbjct: 662 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 700
Score = 29.0 bits (64), Expect = 8.7
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 141 SKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGA--CGDGSCQDVDGAM 198
+ C N+ C+D + C F GD PC C G C + +
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD-----SSPCSAFEFHCLSGEC--IHSSW 211
Query: 199 KC 200
+C
Sbjct: 212 RC 213
Score = 28.6 bits (63), Expect = 9.2
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPG--ACGDGSCQD 193
+ C+ ++ C +G C + C G + + L C G +CG +
Sbjct: 22 DRCERNEFQ-C-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 79
Query: 194 VDGAMKC 200
+ +C
Sbjct: 80 IPQFWRC 86
Score = 28.6 bits (63), Expect = 9.7
Identities = 13/78 (16%), Positives = 17/78 (21%), Gaps = 7/78 (8%)
Query: 561 DCSDLESSPVCAPKPCQ-NYGICYPTDTSERGYNCS----CLTGYSGDHCEKENNMCMKG 615
DC D CA C+ + C + C C C
Sbjct: 218 DCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 277
Query: 616 DVCKNGGMCKVTPDSYEC 633
+ G C C
Sbjct: 278 KFKCHSGEC--ITLDKVC 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 31.9 bits (72), Expect = 0.80
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 136 NTCKSSKHNNCINNGLC----QDAATRIGYTCICPPGFS 170
N C+ + +N LC Q +TC CP G
Sbjct: 268 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 32.2 bits (74), Expect = 0.83
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 780 NIYLGGTPNMDLM-TGGRYVHPMSGLMMNIHIQNKHISNIGSSAS--------SGLHVMP 830
N+Y G + DL+ G + +++I ++ I+ IG SGL V P
Sbjct: 14 NLYFQGHMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSP 73
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.89
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 304 KEAPYGSKITLT-CN----NDLEAPVEYTWSKRSNG-------HVLPFGAFSRENTLTLQ 351
K GS + + N D+EA +E+ + NG ++PF A +
Sbjct: 525 KYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGI---- 580
Query: 352 EIKNSDA 358
E+++ D+
Sbjct: 581 ELEHIDS 587
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 31.3 bits (70), Expect = 0.90
Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 7/90 (7%)
Query: 306 APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKV 365
+ + C+ P N +L A S + C
Sbjct: 14 VEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDTVLQCHF 69
Query: 366 SNKDMTVEIPSILLV---TDSVPLFTQKPL 392
+ + S + V V L Q L
Sbjct: 70 TCSGKQESMNSNVSVYQPPRQVILTLQPTL 99
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.9 bits (71), Expect = 0.97
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 7/78 (8%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
+ C +G C + +C+C + G C P D +
Sbjct: 529 DNVYIGDGCLDMCSGHGRC------VQGSCVCDEQWGGLYCDEPETSL-PTQLKDNFNRA 581
Query: 194 VDGAMKCLCPIGTAGKRC 211
G C
Sbjct: 582 PSNQNWLTVSGGKLSTVC 599
Score = 31.2 bits (69), Expect = 1.9
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 14/88 (15%)
Query: 563 SDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMK------GD 616
++ C C +G C +C C + G +C++
Sbjct: 529 DNVYIGDGCLD-MCSGHGRCVQG-------SCVCDEQWGGLYCDEPETSLPTQLKDNFNR 580
Query: 617 VCKNGGMCKVTPDSYECLCSLGYAPPNC 644
N V+ +C +
Sbjct: 581 APSNQNWLTVSGGKLSTVCGAVASGLAL 608
Score = 29.6 bits (65), Expect = 5.7
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 589 ERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
+ ++ D+ + D+C G C C+C + C
Sbjct: 515 HQPAPFDKQQTWAIDNVYIGDGC---LDMCSGHGRCVQG----SCVCDEQWGGLYC 563
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 32.2 bits (72), Expect = 0.98
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
C + CQ +CP C+ G C+ C G+C
Sbjct: 170 PATVINGQFVERCWTHSHCQ---------KVCPTICKSHGCTAEGLCCHSE-C-LGNCSQ 218
Query: 194 VDGAMKCL-CPIGTAGKRCEQK 214
D KC+ C RC +
Sbjct: 219 PDDPTKCVACRNFYLDGRCVET 240
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 31.9 bits (72), Expect = 0.98
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMK---CLC 202
C +G C + + P + + G P G S +D C C
Sbjct: 344 CSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLS--LRGALSLEDQAQMAVEFKCRC 401
Query: 203 PIGTAGKRCEQKIKILQPAFKH 224
G CE+K H
Sbjct: 402 YPGWQAPWCERKSMWTGHHHHH 423
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 31.1 bits (69), Expect = 1.0
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 562 CSDLESSPVCAPKPCQNYGI-CYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
CS + + V + C + I ++ + G + L HC + C + C
Sbjct: 13 CSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVE-CGP 71
Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRV 648
G C++ C C+ + +V
Sbjct: 72 GKACRMLGGRPRCECAPDCSGLPARLQV 99
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 31.8 bits (71), Expect = 1.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 143 HNNCINNGLCQDAATRIGYTCICPPGF---SGDRCSVLGEPCYPG 184
NN LC + YTC CP GF + C++ E + G
Sbjct: 309 DNNGGCTHLCLPSGQ--NYTCACPTGFRKINSHACAL--EVLFQG 349
Score = 31.4 bits (70), Expect = 1.2
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 575 PCQNYGICYPT-DTSERGYNCSCLTGYSGD---HCEKENNMCMKGDVCKNGGMCKVTPDS 630
C G C SE + C C GY K + +V P
Sbjct: 3 ECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 62
Query: 631 YEC 633
E
Sbjct: 63 SEY 65
Score = 28.7 bits (63), Expect = 7.9
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 144 NNCINNGLCQDA--ATRIGYTCICPPGFSGD 172
N C G C + + C C G+
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELR 32
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 28.5 bits (64), Expect = 1.0
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 619 KNGG---MCKVTPDSYECLCSLGY 639
NGG C+ C C+ GY
Sbjct: 4 DNGGCDQFCREERSEVRCSCAHGY 27
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 135 CNTCKSSKHNN-CINNGLCQDAATRIGYTCICPPGFS---GDRCSVLGEPCYPGACGDGS 190
C C ++ C G T +CP C+ + C G C
Sbjct: 58 TAHCAFKSKTEKCRDDSDCAKEGICNGITALCPASDPKPNFTDCNRHTQVCINGQCAGSI 117
Query: 191 CQDVDGAMKCLCPIGTA 207
C+ G +C C
Sbjct: 118 CEKH-GLEECTCASSDG 133
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 31.7 bits (71), Expect = 1.1
Identities = 9/38 (23%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 135 CNTCKSSKHNNCINNGLCQD--AATRIGYTCICPPGFS 170
+ NG C G C CP GF
Sbjct: 571 NVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Score = 29.0 bits (64), Expect = 7.6
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 529 VTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYG---ICYPT 585
T+ I + +E ++I + + +++ P +N G +C
Sbjct: 536 WTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLY- 594
Query: 586 DTSERGYNCSCLTGYSGDHCEKENNMCM 613
+G C+C G+ + C+
Sbjct: 595 --RPQGLRCACPIGFE---LISDMKTCI 617
Score = 29.0 bits (64), Expect = 8.0
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 589 ERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGY 639
++ + L + N + C + +C P C C +G+
Sbjct: 559 DQLPDLMGLKATNVHRVIGSNPCAEENGGCSH--LCLYRPQGLRCACPIGF 607
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 30.8 bits (69), Expect = 1.1
Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 16/81 (19%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN-------NMCMKGDVCKNGGM 623
+ C N C S+ GY C Y G C+ G C N
Sbjct: 7 GSNMECPNNLCC-----SQYGY-CGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQC 60
Query: 624 CKVTPDSYECLCSLGYAPPNC 644
C C Y C
Sbjct: 61 C---SQYGYCGFGAEYCGAGC 78
Score = 29.2 bits (65), Expect = 3.8
Identities = 17/103 (16%), Positives = 22/103 (21%), Gaps = 27/103 (26%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEP------------ 180
+ + C G C C G G C +
Sbjct: 48 SQAGGATCTNNQCCSQYGYCGFG------AEYCGAGCQGGPCRADIKCGSQAGGKLCPNN 101
Query: 181 ---CYPGACGDGS------CQDVDGAMKCLCPIGTAGKRCEQK 214
G CG GS CQ + C G+ C
Sbjct: 102 LCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNN 144
Score = 28.5 bits (63), Expect = 5.6
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN 609
+D + C N C S+ G C GY G C+
Sbjct: 127 STDKPCGKDAGGRVCTNNYCC-----SKWGS-CGIGPGYCGAGCQSGG 168
Score = 28.5 bits (63), Expect = 6.9
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 10/91 (10%)
Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK----ENNMCMK-- 614
C +C + C + + G C+ + C K
Sbjct: 77 GCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDA 136
Query: 615 -GDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
G VC N C C GY C
Sbjct: 137 GGRVCTNNYCCSKWG---SCGIGPGYCGAGC 164
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.7 bits (71), Expect = 1.2
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
K++ IN + T +CP C+ G C C G+C
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGL-CCHSEC-LGNCSQ 218
Query: 194 VDGAMKCL-CPIGTAGKRCEQK 214
D KC+ C RC +
Sbjct: 219 PDDPTKCVACRNFYLDGRCVET 240
Score = 31.0 bits (69), Expect = 1.9
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVD 195
N+ + H I+N C CP G++ + ++L PC G C
Sbjct: 268 NSRRQGCHQYVIHNNKC---------IPECPSGYTMNSSNLLCTPCL-GPCPKVCHLLEG 317
Query: 196 GAMKCLCPIGTAGKRC 211
+ C
Sbjct: 318 EKTIDSVTSAQELRGC 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 500 EKLQVLNLRTPLYLGGYNIY--HVTPSLSVEVT 530
EK + L+ L L Y P+L+++ T
Sbjct: 18 EKQALKKLQASLKL-----YADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 2.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 18/46 (39%)
Query: 234 KTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHME 279
+ ++K + SL+ LY+ S +LAI+ ME
Sbjct: 20 QALKKLQASLK-----------LYADDSAP------ALAIKAT-ME 47
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 23 LRITNARLQDSGKYKCEIQ--GHDSFRGSDYVKLNV 56
L I +AR+ D+G+Y ++ D + +NV
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
Score = 28.4 bits (63), Expect = 4.3
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 317 NNDLEAPVEYTWSKRS-----NGHVLPFGAFSREN-TLTLQEIKNSDAGMYVCKVSN--- 367
+ +APV + G +N TL++++ + SDAG Y ++
Sbjct: 53 DISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNI 112
Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
K + VT T +P
Sbjct: 113 KWNYKYDQLSVNVTAL----THRP 132
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 31.3 bits (70), Expect = 1.3
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 165 CPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
+ +G C ++ + C C T G CE+
Sbjct: 239 LKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEK 287
Score = 31.3 bits (70), Expect = 1.4
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 13/81 (16%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
C C ++ + A+ C C Y G C
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASE--CLPCDCNGRSQECYFD---PELYRSTGHGGHCT 337
Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
+ C T G +CE+
Sbjct: 338 N--------CRDNTDGAKCER 350
Score = 29.7 bits (66), Expect = 4.6
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK--NGGMCKVT 627
V C + + + C+C G CEK C+ + +
Sbjct: 251 VGGRCKCNGHASECVKNEFD-KLMCNCKHNTYGVDCEK----CLPFFNDRPWRRATAESA 305
Query: 628 PDSYECLCS 636
+ C C+
Sbjct: 306 SECLPCDCN 314
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 28.1 bits (63), Expect = 1.5
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 619 KNGG---MCKVTPDSYECLCSLGY 639
NG C +S C C+ GY
Sbjct: 7 DNGDCDQFCHEEQNSVVCSCARGY 30
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar
binding protein; 1.80A {Phytolacca americana} SCOP:
g.3.1.1 g.3.1.1 g.3.1.1
Length = 126
Score = 29.8 bits (66), Expect = 1.5
Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 561 DCSDLESSPVCAPKPC-QNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK 619
C S VC C +G C T+ G C Y+ E C C
Sbjct: 3 VCGVRASGRVCPDGYCCSQWGYCGTTEEYC-GKGCQSQCDYNRCGKEFGGKECHDELCCS 61
Query: 620 NGGMCKVTPDSYECLCSLGYAPPNC 644
G C + C + C
Sbjct: 62 QYGWCGNSDGHCGEGCQSQCSYWRC 86
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 31.2 bits (70), Expect = 1.5
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPCYP 183
+ C + LC + + Y C CP G G C +
Sbjct: 266 ATNPCGIDNGGC--SHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.0 bits (69), Expect = 1.5
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 134 SCNTC-KSSKHNNCIN-NGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGS 190
C + + + I G ++ + C C C EP G+G+
Sbjct: 402 KVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA-------CQAQAEPNSHRCNNGNGT 454
Query: 191 CQDVDGAMKCLCPIGTAGKRCE 212
G C C G G +CE
Sbjct: 455 F--ECG--VCRCGPGWLGSQCE 472
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 30.2 bits (68), Expect = 1.6
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGY----SGDHCE 606
+D+ PC ++ + GY CSC Y +C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFI-----GGYFCSCPPEYFLHDDMKNCG 157
Score = 28.2 bits (63), Expect = 7.5
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 598 TGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGY 639
TG++ + + N C C Y C C Y
Sbjct: 106 TGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY 147
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 30.1 bits (68), Expect = 1.6
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 623 MCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDF 682
+C + L PP + G V G + +EL +++ E + DF
Sbjct: 83 LCASIEGINRQVEPL--DPPAGSA---PGEHVFVKGYEKGQPDEELKPKKKVFEKLQADF 137
Query: 683 VTDDKNALLLWNGQP 697
+ + W
Sbjct: 138 KISE-ECIAQWKQTN 151
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A
{Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB:
1ulm_A* 1uln_A
Length = 82
Score = 29.0 bits (64), Expect = 1.6
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
C +G C T + G C Y + +C + C G C + D
Sbjct: 19 CSQWGYC-GTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDD 71
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 29.4 bits (66), Expect = 1.6
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSD---YVKLNVE 57
+ + N +D+G Y C + D V+++V
Sbjct: 70 VTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVF 107
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/58 (17%), Positives = 13/58 (22%), Gaps = 2/58 (3%)
Query: 307 PYGSKITLTCNNDLEAPVEYTWSKRSN-GHVLPFGAFSRENTLTLQEIKNSDAGMYVC 363
G +TL C+ A + DAG Y C
Sbjct: 17 SLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Score = 28.5 bits (64), Expect = 2.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 25 ITNARLQDSGKYKCEIQGHDSFRG---SDYVKLNV 56
L+D+G Y+C Q + SD V+L +
Sbjct: 60 FAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVL 94
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.5 bits (65), Expect = 1.9
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 20/85 (23%)
Query: 319 DLEAPVEY-------TWSKRSNGHVLPFGAFSRENT------------LTLQEIKNSDAG 359
+E PV+Y TW K + +P + T L + I SD G
Sbjct: 33 KIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNG 92
Query: 360 MYVCKVSNKDMTVEIPSILL-VTDS 383
Y C + + S+ + V +
Sbjct: 93 SYSCSTNFNSQVINSHSVTIHVRER 117
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 31.0 bits (69), Expect = 2.0
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
C +++ + ++ G CQD + + E C C D
Sbjct: 797 FLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTK----KESCGYDTCYDWEKC 852
Query: 193 DVDGAMKCLC 202
+ KC+C
Sbjct: 853 SASTS-KCVC 861
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.4 bits (66), Expect = 2.1
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 YIKWSRADGLPLQRYAEGNV--LRITNARLQDSGKYKCEIQG 42
+ + L+ Y + + +R+ N +++DSG Y+C I
Sbjct: 61 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ 102
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 2.2
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + D+ Y C I+ V++ +
Sbjct: 77 VTMEDLMKTDADTYWCGIE-KTGNDLGVTVQVTI 109
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 29.7 bits (66), Expect = 2.5
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 3/75 (4%)
Query: 306 APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKV 365
P G + +TC+ + P L N + + +C
Sbjct: 11 LPRGGSVLVTCSTSCDQPKLLGIETPLPKKELL---LPGNNRKVYELSNVQEDSQPMCYS 67
Query: 366 SNKDMTVEIPSILLV 380
+ D + L V
Sbjct: 68 NCPDGQSTAKTFLTV 82
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 30.2 bits (68), Expect = 2.7
Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 17/76 (22%)
Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC-- 633
C + G C + S C CL + + + YEC
Sbjct: 71 CSSLGGCDLNNPS----RCECL--------DDLDEPTHFAYDAQGRVRADTGAVIYECNS 118
Query: 634 LCSLGYAPPNCAKRVS 649
CS C RV
Sbjct: 119 FCSCS---MECPNRVV 131
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.4 bits (68), Expect = 2.8
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMC-MKGDVCKNGGMCKVT 627
P C P + + Y + SG C+ + + CK
Sbjct: 241 PRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNL 300
Query: 628 PDSYECLCSLGYAPPNC 644
++Y C G P C
Sbjct: 301 DENY-CRNPDGKRAPWC 316
Score = 28.9 bits (64), Expect = 8.1
Identities = 9/51 (17%), Positives = 11/51 (21%)
Query: 161 YTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRC 211
C P G C C SC + + L P
Sbjct: 303 NYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTP 353
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 30.3 bits (68), Expect = 2.9
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 15/67 (22%)
Query: 130 VGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
+ C + C + C +C+C G++G+ G
Sbjct: 13 WWNSAQRFCPDGSPSECHEHADC-VLERDGSRSCVCAVGWAGN--------------GIL 57
Query: 190 SCQDVDG 196
+D D
Sbjct: 58 CGRDTDL 64
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.5 bits (68), Expect = 3.0
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 1/36 (2%)
Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS 170
+N + +C C CP
Sbjct: 576 EYRQHPCAQDNGGCSHICL-VKGDGTTRCSCPMHLV 610
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 30.4 bits (68), Expect = 3.3
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 300 PVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPF----------GAFSRENT 347
+ ++ K T TC TW G+ S+ +
Sbjct: 303 TPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSR 362
Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALP 398
LTL + C +++ + + L+ LS L
Sbjct: 363 LTLPRSLWNAGTSVTCTLNHPSLPPQ---RLMALREPAAQAPVKLSLNLLA 410
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 29.6 bits (66), Expect = 3.8
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE-------NTLTLQEIKNSDAGMY 361
+ L C +D+ + + G E ++ + AG Y
Sbjct: 21 EETVILQCWSDVRF-QHFLLHR--EGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY 77
Query: 362 VCKVSN 367
C S
Sbjct: 78 RCYGSV 83
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 718 EYSYDLGDGVVTIKFSKKPVNDGIKHS--------VNVTRINKFGS 755
+Y DLGDG + + + I+H V+V N G
Sbjct: 63 KYQVDLGDGFKAMYVNLTLTGEPIRHRYESPGIYRVSVRAENTAGH 108
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.3 bits (62), Expect = 4.6
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 302 STKEAPYGSKITLTCNNDLEAPVEY-------TWSKRSNGHVLPFGA-----FSRENT-- 347
S G L C PV+Y TW K + + +N
Sbjct: 19 SEHSILAGDPFELEC------PVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72
Query: 348 --LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILL-VTDS 383
L + + +D G Y C + + +E S L VTD
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV 111
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 29.3 bits (66), Expect = 4.7
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKR 647
+ C E D C++ C +SY C C+ GY K+
Sbjct: 3 NECHPERT-----DGCQH--FCLPGQESYTCSCAQGYRLGEDHKQ 40
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.8 bits (62), Expect = 5.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 23 LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
+ + + R+ D+G Y C I V +N+
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFK-VTVNI 108
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 28.9 bits (64), Expect = 6.5
Identities = 7/48 (14%), Positives = 9/48 (18%)
Query: 597 LTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
+ G + C D C CS C
Sbjct: 152 VYGCKITDYVDGSGSGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRC 199
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 29.0 bits (66), Expect = 6.5
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSAS----------SGLHVMP 830
M L+ G+ + +I I K I I + G V P
Sbjct: 1 MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSP 52
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 28.8 bits (64), Expect = 7.0
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 302 STKEAPYGSKITLTCN-NDLEAPVEY--TWSKRSNGHVLPF---------GAFSRENTLT 349
S E L C +L + TW++ +G++ P G +S + +
Sbjct: 21 SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVP 80
Query: 350 LQEIKNSDAGMYVCKVSNKDMTV 372
+ + C V ++++ +
Sbjct: 81 VSTQDWLSGERFTCTVQHEELPL 103
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 26.7 bits (59), Expect = 7.8
Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 14/58 (24%)
Query: 144 NNC-INNG----LCQDAATRIGYTCICPPGFS----GDRCSVLGEPCYPGACGDGSCQ 192
C NG C D +C C G+S G C P CG
Sbjct: 6 LICVNENGGCEQYCSDHTGT-KRSCRCHEGYSLLADGVSC----TPTVEYPCGKIPIL 58
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 28.9 bits (63), Expect = 9.0
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCI--CPPGFSGDRCSVLGEPCYPGACG--D 188
+ TC S + C +D G C+ CP G G + + P C
Sbjct: 541 EGTATCNGSGSDTCAQCAHFRD-----GPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCH 595
Query: 189 GSC 191
+C
Sbjct: 596 ENC 598
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 27.4 bits (60), Expect = 9.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 326 YTWSKRSNGHVLPFGAFSREN---TLTLQEIKNSDAGMYVCKVSN 367
Y + LT+Q ++ D G+Y+CKV
Sbjct: 54 YMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVEL 98
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.3 bits (61), Expect = 9.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 23 LRITNARLQDSGKYKC 38
LRI + ++D G Y+C
Sbjct: 68 LRINDLTVEDGGTYRC 83
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.9 bits (62), Expect = 9.7
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 298 FNPVSTKEAPYGSKITLTCN----NDLEAPVEYTW----SKRSNGHVLPF-----GAFSR 344
F P +TC + + V++ W + N P +
Sbjct: 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 66
Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
+ LT+ + Y CKVSNK + I + P ++P Y P+
Sbjct: 67 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQP---REPQVYTLPPS 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.422
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,913,487
Number of extensions: 816458
Number of successful extensions: 3876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3236
Number of HSP's successfully gapped: 1257
Length of query: 834
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 732
Effective length of database: 3,853,851
Effective search space: 2821018932
Effective search space used: 2821018932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)