BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9229
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 118/136 (86%)
Query: 73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
+R++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 121
Query: 193 KVTVDGPREPRSKTRK 208
K+TVDGPREPR +K
Sbjct: 122 KITVDGPREPRRHRQK 137
>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain
pdb|2J6W|B Chain B, R164n Mutant Of The Runx1 Runt Domain
Length = 140
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 117/136 (86%)
Query: 73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
+R++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY AI
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHNAI 121
Query: 193 KVTVDGPREPRSKTRK 208
K+TVDGPREPR +K
Sbjct: 122 KITVDGPREPRRHRQK 137
>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And
Heterodimerization For The Pebp2CBF RUNT-Domain
Length = 127
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 113/125 (90%)
Query: 79 DFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDEN 138
+ L++HPGELVRT SP F+C+VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ AGNDEN
Sbjct: 2 EVLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 61
Query: 139 YCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198
Y AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDG
Sbjct: 62 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 121
Query: 199 PREPR 203
PREPR
Sbjct: 122 PREPR 126
>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX
pdb|1H9D|C Chain C, Aml1CBF-BetaDNA COMPLEX
pdb|1E50|A Chain A, Aml1CBF COMPLEX
pdb|1E50|C Chain C, Aml1CBF COMPLEX
pdb|1E50|E Chain E, Aml1CBF COMPLEX
pdb|1E50|G Chain G, Aml1CBF COMPLEX
pdb|1E50|Q Chain Q, Aml1CBF COMPLEX
pdb|1E50|R Chain R, Aml1CBF COMPLEX
Length = 134
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/133 (74%), Positives = 116/133 (87%)
Query: 76 TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 135
++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1 SMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGN 60
Query: 136 DENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVT 195
DENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+T
Sbjct: 61 DENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKIT 120
Query: 196 VDGPREPRSKTRK 208
VDGPREPR +K
Sbjct: 121 VDGPREPRRHRQK 133
>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
pdb|1LJM|B Chain B, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
Length = 131
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 112/125 (89%)
Query: 79 DFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDEN 138
+ L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDEN
Sbjct: 3 EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 62
Query: 139 YCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198
Y AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDG
Sbjct: 63 YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 122
Query: 199 PREPR 203
PREPR
Sbjct: 123 PREPR 127
>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAQ|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 116/136 (85%)
Query: 73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
+R+ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSXVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVX 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
AGNDENY AELRN TA KNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct: 62 AGNDENYSAELRNATAAXKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 121
Query: 193 KVTVDGPREPRSKTRK 208
K+TVDGPREPR +K
Sbjct: 122 KITVDGPREPRRHRQK 137
>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1HJB|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|F Chain F, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJC|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
pdb|1HJC|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
Length = 123
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 108/123 (87%)
Query: 86 GELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRN 145
GELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY AELRN
Sbjct: 1 GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 146 CTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSK 205
TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDGPREPR
Sbjct: 61 ATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRH 120
Query: 206 TRK 208
+K
Sbjct: 121 RQK 123
>pdb|1CO1|A Chain A, Fold Of The Cbfa
Length = 115
Score = 199 bits (507), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 103/115 (89%)
Query: 87 ELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNC 146
ELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY AELRN
Sbjct: 1 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 147 TAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPRE 201
TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDGPRE
Sbjct: 61 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPRE 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,824,751
Number of Sequences: 62578
Number of extensions: 320227
Number of successful extensions: 723
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 40
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)