BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9229
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1
SV=3
Length = 453
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/135 (74%), Positives = 118/135 (87%)
Query: 74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
+R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107
Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167
Query: 194 VTVDGPREPRSKTRK 208
+TVDGPREPR +K
Sbjct: 168 ITVDGPREPRRHRQK 182
>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1
PE=2 SV=1
Length = 450
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/135 (74%), Positives = 118/135 (87%)
Query: 74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
+R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107
Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167
Query: 194 VTVDGPREPRSKTRK 208
+TVDGPREPR +K
Sbjct: 168 ITVDGPREPRRHRQK 182
>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1
SV=1
Length = 451
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/135 (74%), Positives = 118/135 (87%)
Query: 74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
+R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107
Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167
Query: 194 VTVDGPREPRSKTRK 208
+TVDGPREPR +K
Sbjct: 168 ITVDGPREPRRHRQK 182
>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1
SV=2
Length = 521
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/134 (74%), Positives = 117/134 (87%)
Query: 75 RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
RT+ + +++HP ELVRT SP F+C+VLP HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 100 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 159
Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIKV
Sbjct: 160 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKV 219
Query: 195 TVDGPREPRSKTRK 208
TVDGPREPR +K
Sbjct: 220 TVDGPREPRRHRQK 233
>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2
SV=2
Length = 462
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 117/135 (86%)
Query: 74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
+R + + LS+HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALG+V DGT+VT+ A
Sbjct: 48 DRNMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMA 107
Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
GNDENY AELRN TA MK+QVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKSQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167
Query: 194 VTVDGPREPRSKTRK 208
+TVDGPREPR +K
Sbjct: 168 ITVDGPREPRRHRQK 182
>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1
SV=2
Length = 607
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/134 (74%), Positives = 117/134 (87%)
Query: 75 RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
RT+ + +++HP ELVRT SP F+C+VLP HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 186 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 245
Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIKV
Sbjct: 246 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKV 305
Query: 195 TVDGPREPRSKTRK 208
TVDGPREPR +K
Sbjct: 306 TVDGPREPRRHRQK 319
>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2
SV=3
Length = 409
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 101/134 (75%), Positives = 116/134 (86%)
Query: 75 RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
R++ D L++H GELVRT SP F+C+VLP HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct: 54 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 113
Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++P QV TY +AIKV
Sbjct: 114 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKV 173
Query: 195 TVDGPREPRSKTRK 208
TVDGPREPR +K
Sbjct: 174 TVDGPREPRRHRQK 187
>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1
SV=2
Length = 415
Score = 217 bits (552), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/134 (75%), Positives = 116/134 (86%)
Query: 75 RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
R++ D L++H GELVRT SP F+C+VLP HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct: 53 RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 112
Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++P QV TY +AIKV
Sbjct: 113 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKV 172
Query: 195 TVDGPREPRSKTRK 208
TVDGPREPR +K
Sbjct: 173 TVDGPREPRRHRQK 186
>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2
SV=2
Length = 510
Score = 214 bits (545), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/146 (69%), Positives = 118/146 (80%), Gaps = 3/146 (2%)
Query: 65 SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
S MT D+ A +L + L E+ GEL +TGSP +C+ LP HWRSNK+LP AFKV+AL DV
Sbjct: 98 SSMT-DMFA--SLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVP 154
Query: 125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
DGT+V+I+ GNDENYC ELRNCT MKNQVAKFNDLRFVGRSGRGKSFTLTITI++ P Q
Sbjct: 155 DGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQ 214
Query: 185 VTTYSKAIKVTVDGPREPRSKTRKSF 210
+ +YSKAIKVTVDGPREPRSK +
Sbjct: 215 IASYSKAIKVTVDGPREPRSKQSYGY 240
>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2
Length = 826
Score = 211 bits (538), Expect = 3e-54, Method: Composition-based stats.
Identities = 104/133 (78%), Positives = 114/133 (85%)
Query: 74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
ER + EHPGELVRT +P F+C+ LP HWRSNKTLP+AFKVVAL +V DGT VTIRA
Sbjct: 273 ERLVQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRA 332
Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
GNDEN CAELRN T MKN VAKFNDLRFVGRSGRGKSFTLTIT+++SPPQV TY+KAIK
Sbjct: 333 GNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIK 392
Query: 194 VTVDGPREPRSKT 206
VTVDGPREPRSKT
Sbjct: 393 VTVDGPREPRSKT 405
>sp|Q9Z2J9|RUNX2_RAT Runt-related transcription factor 2 (Fragments) OS=Rattus
norvegicus GN=Runx2 PE=2 SV=2
Length = 218
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/101 (80%), Positives = 91/101 (90%)
Query: 108 NKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSG 167
NKTLPVAFKVVALG+V DGT+VT+ AGNDENY AELRN +AVMKNQVA+FNDLRFVGRSG
Sbjct: 99 NKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSG 158
Query: 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRK 208
RGKSFTLTIT+ ++PPQV TY +AIKVTVDGPREPR +K
Sbjct: 159 RGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQK 199
>sp|Q25520|RUNT_MANSE Segmentation protein Runt (Fragment) OS=Manduca sexta GN=RUNT PE=2
SV=1
Length = 79
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 72/79 (91%)
Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
AL DV DGT+VTI+AGNDEN AELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI
Sbjct: 1 ALDDVQDGTLVTIKAGNDENVMAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 60
Query: 179 SSSPPQVTTYSKAIKVTVD 197
S+ P QV TYSKAIKVTVD
Sbjct: 61 STFPSQVATYSKAIKVTVD 79
>sp|Q8CPT8|Y665_STAES Uncharacterized protein SE_0665 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0665 PE=3 SV=1
Length = 301
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E+ + +++ HPG+++ TG+P V L P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEK-ISKYVALHPGDIIATGTPAGVGAGLQP 274
>sp|Q5HQJ3|Y556_STAEQ Uncharacterized protein SERP0556 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0556 PE=3 SV=1
Length = 301
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E+ + +++ HPG+++ TG+P V L P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEK-ISKYVALHPGDIIATGTPAGVGAGLQP 274
>sp|Q4L4Y4|Y1982_STAHJ Uncharacterized protein SH1982 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH1982 PE=3 SV=1
Length = 301
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNT ++N D++ E + +++ HPG+++ TG+P V L P
Sbjct: 228 IRQDGNTSQMIN-----KIDDLIEE--ISKYVALHPGDIIATGTPAGVGAGLQP 274
>sp|Q5HHB6|Y973_STAAC Uncharacterized protein SACOL0973 OS=Staphylococcus aureus (strain
COL) GN=SACOL0973 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q99VC2|Y968_STAAM Uncharacterized protein SAV0968 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0968 PE=1 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q6GIC0|Y930_STAAR Uncharacterized protein SAR0930 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0930 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q2FZT4|Y906_STAA8 Uncharacterized protein SAOUHSC_00906 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_00906 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q2FIA7|Y871_STAA3 Uncharacterized protein SAUSA300_0871 OS=Staphylococcus aureus
(strain USA300) GN=SAUSA300_0871 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q7A1B6|Y850_STAAW Uncharacterized protein MW0850 OS=Staphylococcus aureus (strain
MW2) GN=MW0850 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q6GAV8|Y838_STAAS Uncharacterized protein SAS0838 OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0838 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q2YWW3|Y837_STAAB Uncharacterized protein SAB0837 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB0837 PE=3 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
>sp|Q7A6H3|Y829_STAAN Uncharacterized protein SA0829 OS=Staphylococcus aureus (strain
N315) GN=SA0829 PE=1 SV=1
Length = 300
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 50 VRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPP 103
+R +GNTG ++ + D L E + +++ HPG+++ TG+P V + P
Sbjct: 228 IRQDGNTGEMI------LKIDELIEE-ISKYVALHPGDIIATGTPAGVGAGMQP 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,818,776
Number of Sequences: 539616
Number of extensions: 4038500
Number of successful extensions: 8063
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7993
Number of HSP's gapped (non-prelim): 84
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)